Citrus Sinensis ID: 009025
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GWE0 | 702 | Pentatricopeptide repeat- | yes | no | 0.813 | 0.632 | 0.735 | 0.0 | |
| Q9LS25 | 711 | Pentatricopeptide repeat- | no | no | 0.796 | 0.611 | 0.415 | 1e-100 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.785 | 0.467 | 0.246 | 6e-33 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.741 | 0.281 | 0.236 | 4e-31 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.783 | 0.497 | 0.225 | 2e-30 | |
| Q9SSF9 | 855 | Pentatricopeptide repeat- | no | no | 0.783 | 0.500 | 0.227 | 3e-30 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.424 | 0.283 | 0.272 | 1e-28 | |
| Q8RWS8 | 822 | Pentatricopeptide repeat- | no | no | 0.532 | 0.354 | 0.270 | 2e-27 | |
| Q9LYT2 | 583 | Pentatricopeptide repeat- | no | no | 0.397 | 0.372 | 0.289 | 1e-24 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.426 | 0.270 | 0.276 | 2e-24 |
| >sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/446 (73%), Positives = 386/446 (86%), Gaps = 2/446 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KKAY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616
Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLESR S V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSAGGVSA 702
|
Involved in chloroplast RNA processing. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 277/438 (63%), Gaps = 3/438 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+++G VE LY+RA W+ D AFS L K++G AG++DG V +EMK++ VKPN+
Sbjct: 267 SKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNV 326
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+ YN LL+ MGRA +P ++++ EM + GL+PN T +L++ YG+AR+ D L ++ E
Sbjct: 327 VVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEE 386
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
MK K + LYNTLL MCAD+G +EA +F DMK S C+PD++++++M+ I G
Sbjct: 387 MKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGG 446
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
K +A +F EML+AG + N+ T L+QC GKA+R DDVV + + G+ PDDR CG
Sbjct: 447 KAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCG 506
Query: 337 CLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
CLL+VM E+ K++ C+E++N KL V L+++E+ K+E + N+ +
Sbjct: 507 CLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVE 566
Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
++ +CNCLID+C N E A +LL LG +Y + +++ +WSL ++SLS+GAA T
Sbjct: 567 ARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAET 626
Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
AL W+ L+ ++ EE P L TG G H++S +GLA+ F HL++L+APF S D+
Sbjct: 627 ALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DR 684
Query: 516 VGWFLTTEAAAKSWLESR 533
G F+ T+ SWLES+
Sbjct: 685 PGIFVATKEDLVSWLESK 702
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 124/504 (24%), Positives = 220/504 (43%), Gaps = 75/504 (14%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+ G +++AF + A+ RI PN ++ST+I + AG FD LN++ EM+ +G+ +
Sbjct: 386 KGGQMDLAFEIL--AQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD 443
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
++YN LL + R + I +EM G+ + TY +LL YG+ ++ V+
Sbjct: 444 RVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFT 503
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
EMK + + ++ Y+TL+ + G EA EIF + KS+ + D +S++I
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA-GLRADVVLYSALIDALCKN 562
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV------------------ 317
G V A ++ +EM + G PN+ S+I +G++ D
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSAL 622
Query: 318 ------RALNRLPELGITPDDRFC----------GCLLNVMTQTPK-------------- 347
R + +L ++R C+L V + +
Sbjct: 623 TETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAIL 682
Query: 348 ---------EELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELF---NSISK 394
E+ L+E + ++K+ G V LL+ +++ + +A LF N +
Sbjct: 683 NACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDG 739
Query: 395 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
A+ N L D+ + A + G + +V+ ++ S S L L +S GAA
Sbjct: 740 STASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGAAR 795
Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDS 512
+H W+ ++ + G E P +L I TG GKH D L E L+ ++APFH S
Sbjct: 796 AMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLS 855
Query: 513 PDKVGWFLTTEAAAKSWLESRSSL 536
+G F ++ + +WL ++L
Sbjct: 856 KCNMGRFTSSGSVVATWLRESATL 879
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 205/423 (48%), Gaps = 18/423 (4%)
Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
++++ +++++K+Y ++ + VY+ +K G++P+ TYN L+ R +RP +
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
+ ++M + GL P +TY SL+ A+G+ + E ++ E+ KG++L + Y+T++ +
Sbjct: 983 LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042
Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
D G +A ++ + MK++ +P T ++ S G EAE + + + + E
Sbjct: 1043 RDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELT 1101
Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT-QTPKEELGKLVE 355
+S+I Y +++ + + L + + G+ PD R C + + K E+ L++
Sbjct: 1102 TLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLK 1161
Query: 356 CVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
+E L ++LL L +++G F+K SI + + N L++L
Sbjct: 1162 ALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAALNFVNALLNLLWA 1214
Query: 411 LNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-L 468
L A + +LG+ +++ D+ + W + LS GAAL AL +W++ + A L
Sbjct: 1215 FELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDASL 1274
Query: 469 ESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 528
E E P + + TG +Y+ L ++ L E+ +PF + G + + +
Sbjct: 1275 EGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRM 1332
Query: 529 WLE 531
WL+
Sbjct: 1333 WLK 1335
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/444 (22%), Positives = 199/444 (44%), Gaps = 16/444 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RA + A ++++ + + D + TLI ++ AG D +++Y+ M+A G+ P+
Sbjct: 411 RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTF 470
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY+ +++ +G+A ++ EM D G +PN TY ++ + +AR ++ L +YR+M
Sbjct: 471 TYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G + Y+ ++ + GY +EA +F +M+ +N PD + ++ + G
Sbjct: 531 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGN 589
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
V +A + ML AG PN+ SL+ + + + + L + LG+ P +
Sbjct: 590 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649
Query: 338 LLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELF 389
LL+ T K ++G + + + G+ + L + G + + A +L
Sbjct: 650 LLSCCTDGRSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLM 705
Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
+S ++ K+ + ++D E A + E+ V+ D ++ +S + W ++L +
Sbjct: 706 HSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVM 765
Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
S G A+TAL + K + + P + I TG G+ + E L
Sbjct: 766 SEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFG 825
Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
+PF G F+ + WL
Sbjct: 826 SPFFTESGNSGCFVGSGEPLNRWL 849
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/444 (22%), Positives = 195/444 (43%), Gaps = 16/444 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RA ++ A ++++ + D + TLI ++ AG D +++Y+ M+ G+ P+
Sbjct: 406 RANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTF 465
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY+ +++ +G+A ++ EM G +PN T+ ++ + +AR E L +YR+M
Sbjct: 466 TYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDM 525
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G Q Y+ ++ + G+ +EA +F +M+ +N PD + ++ + G
Sbjct: 526 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQ-RKNWVPDEPVYGLLVDLWGKAGN 584
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
V +A + ML+AG PN+ SL+ + + R + L + LG+ P +
Sbjct: 585 VDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTL 644
Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELF 389
LL+ T ++G + + S G+ + L + G D +
Sbjct: 645 LLSCCTDARSNFDMGFCGQLMAVS----GHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFM 700
Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
+S ++ K+ + ++D L E A + E+ VY D ++ +S + W ++L +
Sbjct: 701 HSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVM 760
Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
S G A+ AL + K + + P + I TG G+ + E L N
Sbjct: 761 SEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFN 820
Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
PF G F+ + K+WL
Sbjct: 821 FPFFTENGNSGCFVGSGEPLKNWL 844
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAG VE A +++ RN + + F+ IK+YG G F + +++E+ G+ P+++
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIV 455
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+N LL G+ +V ++KEM G P T+ +L+ AY R E ++VYR M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS---------- 267
+ G+ ++ YNT+LA A G +++ ++ +M+ C+P+ T+ S
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR-CKPNELTYCSLLHAYANGKE 574
Query: 268 -------------------------MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
++ +CS + EAE F+E+ E GF P++ L S
Sbjct: 575 IGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNS 634
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
++ YG+ Q L+ + E G TP
Sbjct: 635 MVSIYGRRQMVAKANGVLDYMKERGFTP 662
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 8/299 (2%)
Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
V+ A GL+ +KW P+A + LI +G AG + +N+ ++M + P+ TY
Sbjct: 159 VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 216
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
NNL++ G + + + K+MTDNG+ P+ T+ +L AY R LS + MK
Sbjct: 217 NNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 276
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
++ T +N ++ + +G + +A ++F M+ C+PD TF+S++ + S +G++
Sbjct: 277 AKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEI 336
Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
A+F M+ G +PN+ +L+ Y + + L + + GI PD CL
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396
Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 395
LN ++ + K V + + + VV L++ G F EA E+F + +D
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 454
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D + +I +Y AGN++ V+ M GV + +TYN+L+ K +V IY
Sbjct: 246 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 302
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
+M + + P+ +YA L++AYGRAR E+ LSV+ EM + G++ + YN LL A
Sbjct: 303 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
G ++A +F+ M+ + PD W++++M++ + AE F + GFEPN+
Sbjct: 363 GMVEQAKTVFKSMR-RDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421
Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
+LI+ Y KA + ++ ++ GI + +++
Sbjct: 422 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 2/235 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 156
R G E + L DR +NEK ++T+I G +++G L ++ EM+ G++P++
Sbjct: 188 RNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+TYN LL + + +++ M D G+ P+ TY+ L+ +G+ R E + E
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M G +T YN LL A G EA +F M+++ C P++ T+S ++ + G
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSG 366
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ + +F EM + +P+ LI+ +G+ +VV + + E I PD
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| 359495626 | 701 | PREDICTED: pentatricopeptide repeat-cont | 0.809 | 0.630 | 0.806 | 0.0 | |
| 147841962 | 701 | hypothetical protein VITISV_001456 [Viti | 0.809 | 0.630 | 0.799 | 0.0 | |
| 449443502 | 704 | PREDICTED: pentatricopeptide repeat-cont | 0.683 | 0.529 | 0.787 | 0.0 | |
| 26452823 | 702 | putative salt-inducible protein [Arabido | 0.813 | 0.632 | 0.737 | 0.0 | |
| 9755842 | 702 | 67kD chloroplastic RNA-binding protein, | 0.813 | 0.632 | 0.735 | 0.0 | |
| 240255936 | 702 | pentatricopeptide repeat-containing prot | 0.813 | 0.632 | 0.735 | 0.0 | |
| 224137224 | 647 | predicted protein [Populus trichocarpa] | 0.811 | 0.684 | 0.745 | 0.0 | |
| 224089803 | 700 | predicted protein [Populus trichocarpa] | 0.800 | 0.624 | 0.751 | 0.0 | |
| 9755886 | 700 | 67kD chloroplastic RNA-binding protein, | 0.813 | 0.634 | 0.733 | 0.0 | |
| 2244996 | 777 | salt-inducible protein homolog [Arabidop | 0.813 | 0.571 | 0.728 | 0.0 |
| >gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/444 (80%), Positives = 399/444 (89%), Gaps = 2/444 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRIDP FSTLI++YG +GNFDGCLNVYEEMKA+GVKPN++
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN LLD MGRAKRPWQ K IYKEMT+NGL P+W TYA+LLRAYGRARY ED L VY+EM
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEM 377
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG++LSV LYNTLLAMCADVGYT+EA IFEDMKSS NC PDSWTFSS+ITI SC GK
Sbjct: 378 KEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGK 437
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR +RL EL ITPDDRFCGC
Sbjct: 438 VSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGC 497
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+KEA+ELF+SIS DVK
Sbjct: 498 MLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSISADVK 557
Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
KAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSLHLKSLSLGAALTAL
Sbjct: 558 KAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGAALTAL 617
Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
HIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLKELNAPFH++PDKVG
Sbjct: 618 HIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPDKVG 677
Query: 518 WFLTTEAAAKSWLESRSS--LVSV 539
WFLTT+ AA SWLESRS+ LV+V
Sbjct: 678 WFLTTKVAATSWLESRSAPELVAV 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/444 (79%), Positives = 396/444 (89%), Gaps = 2/444 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRIDP FSTLI++YG +GNFDGCLNVYEEMKA+GVKPN++
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN LLD MGRAKRPWQ K IYKEMT+NGL +W TYA+LLRAYGRARY ED L VY+EM
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEM 377
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG++LSV LYNTLLAMCADVGYT+EA IFEDMKSS NC PDSWTFSS+ITI SC GK
Sbjct: 378 KEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGK 437
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR +RL EL ITPDDRFCGC
Sbjct: 438 VSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGC 497
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+KEA+ELF+SIS DV
Sbjct: 498 MLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSISADVX 557
Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
KAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSLHLKSLSLGAALTAL
Sbjct: 558 KAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGAALTAL 617
Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
HIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLKELNAPFH++PDKV
Sbjct: 618 HIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPDKVX 677
Query: 518 WFLTTEAAAKSWLESRSS--LVSV 539
WFLTT+ AA SWLESRS+ LV+V
Sbjct: 678 WFLTTKVAATSWLESRSAPELVAV 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cucumis sativus] gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/438 (78%), Positives = 394/438 (89%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MAF LYDRAR E WRIDP FST+IK++G AGN+DGCLNVYEEMKAIG+KPN++
Sbjct: 261 RAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLV 320
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN LLD MGRAKRPWQ+KTIYKEM NG SP+W TYASLLRAYGRARYGED L VY+EM
Sbjct: 321 IYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEM 380
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+QL+V LYNTLLAMCADVGY +EA EIF+DMKSS C PDSWTFSSMITI SC GK
Sbjct: 381 KEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGK 440
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAE M N+M+EAGF+PN+FVLTSLIQCYGKA+R DDVVR N+L ELG+TPDDRFCGC
Sbjct: 441 VSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDDRFCGC 500
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
LLNV+TQTPK ELGKL++CV ++N KLG+VV+LLL EQD EG+F+ EA+ELF+ +S DV+
Sbjct: 501 LLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDKEGNFRTEASELFSVVSADVR 560
Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
KAYCNCLIDLCVNL+LL+ AC+LL+LGLTL++Y D+QSRSPTQWSL+LK LSLGAALTAL
Sbjct: 561 KAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTAL 620
Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
H+WI DL+K LESGEE PPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFH++P+KVG
Sbjct: 621 HVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPEKVG 680
Query: 518 WFLTTEAAAKSWLESRSS 535
WFLTT+ AAKSWLESRSS
Sbjct: 681 WFLTTKVAAKSWLESRSS 698
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/446 (73%), Positives = 388/446 (86%), Gaps = 2/446 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KKAY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616
Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLESR S V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/446 (73%), Positives = 387/446 (86%), Gaps = 2/446 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KKAY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616
Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLE R S V A
Sbjct: 677 VGWFLTTSVAAKAWLEFRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; AltName: Full=Chloroplastic RNA-binding protein P67; Flags: Precursor gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/446 (73%), Positives = 386/446 (86%), Gaps = 2/446 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KKAY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616
Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLESR S V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa] gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/444 (74%), Positives = 386/444 (86%), Gaps = 1/444 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R GNVE A LYDRAR EKWR+D FSTLI++Y +GNFD CLNVYEEMKA+GVKPN++
Sbjct: 205 RVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLV 264
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN LLD MGRA+RPWQ K Y+++ D+GLSP++ TYA+LLRAYGRARYGEDT+ +Y+EM
Sbjct: 265 IYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEM 324
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEK + L+V LYNT+LAMCAD+G+ DEA EIFEDMK+S PDSWTFSSMIT+ SC GK
Sbjct: 325 KEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNS-GISPDSWTFSSMITMSSCCGK 383
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAE M NEM EAGF+PN+FVLTSLIQCYGKAQR DDVV+ NRL EL ITPDDRFCGC
Sbjct: 384 VSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLYELLITPDDRFCGC 443
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
LLNVMTQTP EELGKLV+CVE++N KLG+VVKLL+EEQ EG+FKKEA +LF++IS +VK
Sbjct: 444 LLNVMTQTPNEELGKLVDCVERANPKLGHVVKLLVEEQGNEGNFKKEAADLFDNISTEVK 503
Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
KAYCNCLIDLCV LN+LE AC+LL+ GLTL +YTDIQS++ TQWSL+LKSLS GAALTAL
Sbjct: 504 KAYCNCLIDLCVKLNMLERACELLDHGLTLGIYTDIQSKTSTQWSLNLKSLSSGAALTAL 563
Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
H+WINDLSKALE+GE+ PPLLGINTGHGKHKYS+KGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 564 HVWINDLSKALEAGEQLPPLLGINTGHGKHKYSEKGLANVFESHLKELNAPFHEAPDKVG 623
Query: 518 WFLTTEAAAKSWLESRSSLVSVPA 541
WFLTT+ AA+SWLESR +V A
Sbjct: 624 WFLTTKVAAESWLESRKLADAVAA 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa] gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/438 (75%), Positives = 383/438 (87%), Gaps = 1/438 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNVE A LYDRAR +WR+D AFSTLI++Y AGNFDGCLNVYEEMKA+GVKPN++
Sbjct: 258 RAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLV 317
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN LLD MGRAKRPWQVK Y+++ DNGLSP++ TYA+LL AYGRARYGED +YREM
Sbjct: 318 IYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREM 377
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYN++LAMCAD+G+ D+A EIFEDMKSS +PDSWTFSSMITI SC GK
Sbjct: 378 KEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSS-GIKPDSWTFSSMITIFSCCGK 436
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAE NEM EAGF+PN+F+LTSLIQCYGKAQR DDVV NR+ EL ITPDDRFCGC
Sbjct: 437 VSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVNTFNRIFELVITPDDRFCGC 496
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
LLNVMTQTP EEL KLV+C E++N KLGYVVKLL+EEQD EG+FK EAT+LF+SIS +VK
Sbjct: 497 LLNVMTQTPNEELSKLVKCAERANPKLGYVVKLLVEEQDSEGNFKNEATDLFDSISTEVK 556
Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
KAYCNCLIDLC+ LN+LE AC+LL+LGLTLE+YT+I SR+ TQWSL+LKSLS GAA+TAL
Sbjct: 557 KAYCNCLIDLCIKLNMLERACELLDLGLTLEIYTNIMSRTSTQWSLNLKSLSPGAAMTAL 616
Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
HIW+NDLSK LE+GE+ PPLLGINTGHGKHKYS+KGLA+VFES+LKELN+PFH++PDKVG
Sbjct: 617 HIWMNDLSKVLEAGEQLPPLLGINTGHGKHKYSEKGLANVFESYLKELNSPFHEAPDKVG 676
Query: 518 WFLTTEAAAKSWLESRSS 535
WFLTT+ AA+SWLESR S
Sbjct: 677 WFLTTKVAAESWLESRKS 694
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/446 (73%), Positives = 383/446 (85%), Gaps = 2/446 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNVEMA LYDRAR EKWRIDP FSTLI++YG AGN+DGCLN+YEEMK++GVKPN++
Sbjct: 255 RAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLV 314
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN LLD+MG+AKRPWQ I+K++ NG PNW+TYA+L+RAYGRARYGED L +YR+M
Sbjct: 315 IYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQM 374
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
K KG++L+V LYNTLL+MCAD+GY DEAFEIF+DMKSS C+PDSWTFSS+IT+ SC G+
Sbjct: 375 KGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGR 434
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEA EM EAGFEP LFVLTSLIQCYGKA++ DDVVR ++ ELGI PDDRFCGC
Sbjct: 435 VSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGC 494
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ECVEK+ KLG VVK+L+EE++ EG KKEA+EL +SI DV
Sbjct: 495 LLNVMTQTPTEEIGKLIECVEKAKPKLGRVVKMLVEEENCEEGVLKKEASELIDSIGSDV 554
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KAY NCLIDLCVNLN LE AC++L+LGL ++Y+ +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 555 NKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSATQWSLHLKSLSLGAALTA 614
Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+ AL SGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 615 LHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 674
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLESR S V A
Sbjct: 675 VGWFLTTSVAAKTWLESRRSSAEVSA 700
|
Source: Raphanus sativus Species: Raphanus sativus Genus: Raphanus Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana] gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/446 (72%), Positives = 386/446 (86%), Gaps = 2/446 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 332 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 391
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 392 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 451
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYNTLL+MCAD + DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 452 KEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 511
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VS+AEA ++ EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGC
Sbjct: 512 VSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 571
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DV
Sbjct: 572 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 631
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KKAY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 632 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 691
Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 692 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 751
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLESR S V A
Sbjct: 752 VGWFLTTSVAAKAWLESRRSAGGVSA 777
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| TAIR|locus:2130549 | 702 | SVR7 "suppressor of variegatio | 0.813 | 0.632 | 0.735 | 9.4e-185 | |
| TAIR|locus:2142320 | 711 | AT5G46580 "AT5G46580" [Arabido | 0.796 | 0.611 | 0.415 | 1.5e-92 | |
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.796 | 0.508 | 0.229 | 4.9e-29 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.644 | 0.428 | 0.258 | 1.1e-26 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.589 | 0.350 | 0.283 | 5.6e-23 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.576 | 0.384 | 0.246 | 7.2e-25 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.564 | 0.412 | 0.297 | 4.8e-23 | |
| TAIR|locus:2077735 | 590 | AT3G59040 "AT3G59040" [Arabido | 0.505 | 0.467 | 0.279 | 1.2e-22 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.569 | 0.378 | 0.247 | 7.4e-21 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.717 | 0.454 | 0.223 | 8.1e-21 |
| TAIR|locus:2130549 SVR7 "suppressor of variegation 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1792 (635.9 bits), Expect = 9.4e-185, P = 9.4e-185
Identities = 328/446 (73%), Positives = 386/446 (86%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE-GDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ E G FKKEA+EL +SI DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KKAY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616
Query: 457 LHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+A LESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLESR S V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSAGGVSA 702
|
|
| TAIR|locus:2142320 AT5G46580 "AT5G46580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 182/438 (41%), Positives = 277/438 (63%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+++G VE LY+RA W+ D AFS L K++G AG++DG V +EMK++ VKPN+
Sbjct: 267 SKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNV 326
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+ YN LL+ MGRA +P ++++ EM + GL+PN T +L++ YG+AR+ D L ++ E
Sbjct: 327 VVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEE 386
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
MK K + LYNTLL MCAD+G +EA +F DMK S C+PD++++++M+ I G
Sbjct: 387 MKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGG 446
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
K +A +F EML+AG + N+ T L+QC GKA+R DDVV + + G+ PDDR CG
Sbjct: 447 KAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCG 506
Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
CLL+VM E+ K++ C+E++N KL V L+++E+ K+E + N+ +
Sbjct: 507 CLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVE 566
Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
++ +CNCLID+C N E A +LL LG +Y + +++ +WSL ++SLS+GAA T
Sbjct: 567 ARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAET 626
Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
AL W+ L+ ++ EE P L TG G H++S +GLA+ F HL++L+APF S D+
Sbjct: 627 ALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DR 684
Query: 516 VGWFLTTEAAAKSWLESR 533
G F+ T+ SWLES+
Sbjct: 685 PGIFVATKEDLVSWLESK 702
|
|
| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 4.9e-29, P = 4.9e-29
Identities = 102/444 (22%), Positives = 200/444 (45%)
Query: 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
SY RA ++ A ++++ + D + TLI ++ AG D +++Y+ M+ G+
Sbjct: 403 SYG-RANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLS 461
Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
P+ TY+ +++ +G+A ++ EM G +PN T+ ++ + +AR E L +
Sbjct: 462 PDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKL 521
Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
YR+M+ G Q Y+ ++ + G+ +EA +F +M+ +N PD + ++ +
Sbjct: 522 YRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQR-KNWVPDEPVYGLLVDLWG 580
Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
G V +A + ML+AG PN+ SL+ + + R + L + LG+ P +
Sbjct: 581 KAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQ 640
Query: 334 FCGCLLNVMTQTPKE-ELGKLVECVEKSNSKLG-YVVKLLLEEQDIEG--DFKKEATELF 389
LL+ T ++G + + S +++K+ D + D +
Sbjct: 641 TYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFM 700
Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
+S ++ K+ + ++D L E A + E+ VY D ++ +S + W ++L +
Sbjct: 701 HSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVM 760
Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELN 506
S G A+ AL + K + + P + I TG G+ + + + E L N
Sbjct: 761 SEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFN 820
Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
PF G F+ + K+WL
Sbjct: 821 FPFFTENGNSGCFVGSGEPLKNWL 844
|
|
| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 96/372 (25%), Positives = 177/372 (47%)
Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
V+ A GL+ +KW P+A + LI +G AG + +N+ ++M + P+ TY
Sbjct: 159 VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 216
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
NNL++ G + + + K+MTDNG+ P+ T+ +L AY R LS + MK
Sbjct: 217 NNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 276
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
++ T +N ++ + +G + +A ++F M+ C+PD TF+S++ + S +G++
Sbjct: 277 AKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEI 336
Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
A+F M+ G +PN+ +L+ Y + + L + + GI PD CL
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396
Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKDV 396
LN ++ + K V + + + VV L++ G F EA E+F + +D
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQDG 455
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
K N ++ +C L + K + + L QSR ++L + + +A+ +
Sbjct: 456 IKP--N-VVSVCTLLAACSRSKKKVNVDTVLSA---AQSRG-----INLNTAAYNSAIGS 504
Query: 457 LHIWINDLSKAL 468
+I +L KA+
Sbjct: 505 -YINAAELEKAI 515
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 5.6e-23, Sum P(2) = 5.6e-23
Identities = 94/332 (28%), Positives = 159/332 (47%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R G V +A +++ A + AFS LI YG +G + ++V+ MK G++PN++
Sbjct: 245 RYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304
Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
TYN ++D G+ + QV + EM NG+ P+ T+ SLL R E +++ E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
M + ++ V YNTLL A+C G D AFEI M + P+ ++S++I +
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKG-GQMDLAFEILAQMPV-KRIMPNVVSYSTVIDGFAKA 422
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
G+ EA +F EM G + +L+ Y K R+++ + L + +GI D
Sbjct: 423 GRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTY 482
Query: 336 GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
LL + K +E+ K+ +++ + + L + +G KEA E+F
Sbjct: 483 NALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKS 542
Query: 395 DVKKA---YCNCLID-LCVNLNLLENACKLLE 422
+A + LID LC N L+ +A L++
Sbjct: 543 AGLRADVVLYSALIDALCKN-GLVGSAVSLID 573
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 7.2e-25, P = 7.2e-25
Identities = 79/321 (24%), Positives = 148/321 (46%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAG VE A +++ RN + + F+ IK+YG G F + +++E+ G+ P+++
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIV 455
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+N LL G+ +V ++KEM G P T+ +L+ AY R E ++VYR M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G+ ++ YNT+LA A G +++ ++ +M+ C+P+ T+ S++ + +
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR-CKPNELTYCSLLHAYANGKE 574
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
+ ++ E+ EP +L +L+ K + RA + L E G +PD
Sbjct: 575 IGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNS 634
Query: 338 LLNVM--TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
++++ Q + G L E+ + L+ DF K L ++K
Sbjct: 635 MVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKG 694
Query: 396 VKK---AYCNCLIDLCVNLNL 413
+K +Y + C N +
Sbjct: 695 IKPDIISYNTVIYAYCRNTRM 715
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 96/323 (29%), Positives = 158/323 (48%)
Query: 98 RAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
R G + E++F L + R + +D ++TLIK Y GNF L ++ EM G+ P++
Sbjct: 287 REGRMKEVSFVLTEMNRRG-YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSV 345
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
ITY +L+ +M +A + +M GL PN TY +L+ + + Y + V RE
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M + G SV YN L+ G ++A + EDMK + PD ++S++++ CR
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE-KGLSPDVVSYSTVLS-GFCRS 463
Query: 277 -KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
V EA + EM+E G +P+ +SLIQ + + +RT + + +G+ PD+
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523
Query: 336 GCLLNV--MTQTPKEELGKLVECVEKS--NSKLGYVVKLL-LEEQDIEGDFKKEATELF- 389
L+N M ++ L E VEK + Y V + L +Q + K+ +LF
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583
Query: 390 -NSISKDVKKAYCNCLIDLCVNL 411
S+ DV Y + LI+ C N+
Sbjct: 584 EESVPSDV--TY-HTLIENCSNI 603
|
|
| TAIR|locus:2077735 AT3G59040 "AT3G59040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 80/286 (27%), Positives = 139/286 (48%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D + +I +Y AGN++ V+ M GV + +TYN+L+ K +V IY
Sbjct: 253 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 309
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
+M + + P+ +YA L++AYGRAR E+ LSV+ EM + G++ + YN LL A
Sbjct: 310 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 369
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
G ++A +F+ M+ + PD W++++M++ + AE F + GFEPN+
Sbjct: 370 GMVEQAKTVFKSMRR-DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 428
Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELG--KLVE 355
+LI+ Y KA + ++ ++ GI + +++ + LG K +E
Sbjct: 429 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEME 488
Query: 356 -CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAY 400
C + K V+ L QD E + KE T + N + + + Y
Sbjct: 489 SCGVPPDQKAKNVLLSLASTQD-ELEEAKELTGIRNETATIIARVY 533
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 7.4e-21, P = 7.4e-21
Identities = 80/323 (24%), Positives = 146/323 (45%)
Query: 33 LSFYSKTSLQKRSVSLQETQSS---NPTKHSQNPQYP-HGKTGSSPKSYIWV-NPKSPRA 87
L YS+T ++++ L E +PT + N GK G S + + V + +
Sbjct: 217 LHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKG 276
Query: 88 SKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
K E + T R G + A + ++ + ++ L++++G AG + L
Sbjct: 277 LKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEAL 336
Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
+V +EM+ + +TYN L+ RA + + + MT G+ PN TY +++ AY
Sbjct: 337 SVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAY 396
Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
G+A ++ L ++ MKE G + YN +L++ ++E ++ DMKS+ C P+
Sbjct: 397 GKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN-GCSPN 455
Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
T+++M+ +C +G +F EM GFEP+ +LI YG+ D +
Sbjct: 456 RATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYG 515
Query: 322 RLPELGITPDDRFCGCLLNVMTQ 344
+ G LLN + +
Sbjct: 516 EMTRAGFNACVTTYNALLNALAR 538
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 8.1e-21, P = 8.1e-21
Identities = 92/412 (22%), Positives = 187/412 (45%)
Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
DP+A ++ LI+++G G F + ++ +M ++P+M TY ++ G+ +
Sbjct: 384 DPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARK 443
Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
I + MT N + P+ Y ++ A+G+A E+ L + M E G S+ +++LL A
Sbjct: 444 ILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFA 503
Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
G E+ I + S + TF++ I GK EA + +M ++ +P+
Sbjct: 504 RGGLVKESEAILSRLVDS-GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDE 562
Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL-LNVMTQTPK-EELGKLVE 355
L +++ Y A+ D+ + I P C C+ L V +T + +++ +L+E
Sbjct: 563 RTLEAVLSVYSFARLVDECREQFEEMKASDILPSI-MCYCMMLAVYGKTERWDDVNELLE 621
Query: 356 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT-ELFNSISKDVKKAYC-------NCLIDL 407
E ++++ + +++ Q I+GD+ ++ ++ + + C N L+D
Sbjct: 622 --EMLSNRVSNIHQVI--GQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDA 677
Query: 408 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 467
L E A ++L ++ ++ ++ WS+ + +S G TAL +W+ND++
Sbjct: 678 LWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDM 737
Query: 468 LESGEEFPPLLGINTGHGKHKYSDKGLAS-VFESHLKELNAPFHDSPDKVGW 518
L G+ P L + + G+ + S S + ++ L S GW
Sbjct: 738 LLKGD-LPQLAVVVSVRGQLEKSSAARESPIAKAAFSFLQDHVSSSFSFTGW 788
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GWE0 | PP314_ARATH | No assigned EC number | 0.7354 | 0.8131 | 0.6324 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 546 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| smart00463 | 80 | smart00463, SMR, Small MutS-related domain | 9e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-16
Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 1/208 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
AG V+ A +Y + P ++ + G++D L++Y++MK GVKP+
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+ ++ L+D G A + I ++ G+ +Y+SL+ A A+ + L +Y +
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
+K ++ +V+ N L+ + +A E+ +MK C P++ T+S ++ +
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILLVASERKD 768
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
+ ++ E G +PNL + +
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 18/234 (7%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
AG+++ AF + AR + ++ ++S+L+ A N+ L +YE++K+I ++P + T
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
N L+ + + + + EM GL PN TY+ LL A R + L + + K
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
E G++ ++ + + +C A E S + WT S + +
Sbjct: 782 EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT-SWALMV------ 834
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ E + AG P + VL+ ++ C Q D + LGI+ D
Sbjct: 835 -------YRETISAGTLPTMEVLSQVLGCL---QLPHDATLRNRLIENLGISAD 878
|
Length = 1060 |
| >gnl|CDD|214676 smart00463, SMR, Small MutS-related domain | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-12
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 440 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY-SDKGLASVF 498
+WSL L L++ ALTAL ++N+ L I TG GKH G+
Sbjct: 1 KWSLDLHGLTVEEALTALDKFLNNARLKG-----LEQKLVIITGKGKHSLGGKSGVKPAL 55
Query: 499 ESHLKELNAPFH 510
+ HL+ + F
Sbjct: 56 KEHLRVESFRFA 67
|
Length = 80 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 36/227 (15%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ L+ + ++ + DG L V ++ G+K + Y L+ T ++ + + ++ EM
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
+ G+ N +T+ +L+ RA Y M+ K ++ ++N L++ C G D
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 244 EAFEIFEDMKS-SENCQPDSWTFSSMI-------------------------------TI 271
AF++ +MK+ + PD T +++ TI
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 272 ----CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
CS +G A +++++M + G +P+ ++L+ G A D
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 70/321 (21%), Positives = 132/321 (41%), Gaps = 23/321 (7%)
Query: 29 RDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRAS 88
R++ +FY + + +S L + S K + K S +A+
Sbjct: 289 REELYTFYEEKQSRAKSSRLPNVKGLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAA 348
Query: 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 148
E+ A N ++ R ID A++ L++ G C+++ E+M+
Sbjct: 349 SDVEEENSLAAYNGGVS-----GKRKSPEYID--AYNRLLR----DGRIKDCIDLLEDME 397
Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
G+ Y+ + +R VK ++ +P +T+ L+ ++ +
Sbjct: 398 KRGLLDMDKIYHAKFFKACKKQR--AVKEAFR-FAKLIRNPTLSTFNMLMSVCASSQDID 454
Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
L V R ++E G++ LY TL++ CA G D FE+F +M ++ + + TF ++
Sbjct: 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGAL 513
Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG- 327
I C+ G+V++A + M +P+ V +LI G ++ V RA + L E+
Sbjct: 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG---QSGAVDRAFDVLAEMKA 570
Query: 328 ----ITPDDRFCGCLLNVMTQ 344
I PD G L+
Sbjct: 571 ETHPIDPDHITVGALMKACAN 591
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-10
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
VT YNTL+ G +EA ++F +MK +P+ +T+S +I
Sbjct: 3 VVT-YNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-10
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 38/209 (18%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPN 155
RAG V AFG Y R++ + D F+ LI G +G D +V EMKA + P+
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
IT L+ A QV RA+ VY+
Sbjct: 579 HITVGALMKACANAG---QV--------------------------DRAK------EVYQ 603
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
+ E ++ + +Y + C+ G D A I++DMK + +PD FS+++ +
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHA 662
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
G + +A + + + G + +SL+
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLM 691
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 44/217 (20%)
Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-- 200
+++EM N+ ++ ++ + A + +++EM ++G T+ +LRA
Sbjct: 180 LFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 201 -YGRARYG--------------------------------EDTLSVYREMKEKGMQLSVT 227
G AR G ED V+ M EK +
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTV 291
Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
+N++LA A GY++EA ++ +M+ S D +TFS MI I S + A+
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
++ GF ++ T+L+ Y K R +D +R+P
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 27/219 (12%)
Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-----PNWNTYASLL 198
+ +M +KPN +T L R K I+ + G+ PN +LL
Sbjct: 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALL 531
Query: 199 RAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
Y GR Y + + + + V +N LL G A E+F M S
Sbjct: 532 DLYVRCGRMNYAWNQFNSHEK--------DVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTD 314
PD TF S++ CS G V++ F+ M + PNL ++ G+A +
Sbjct: 584 GVN-PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642
Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
+ +N++P ITPD G LLN ELG+L
Sbjct: 643 EAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGEL 678
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
P+++TYN L+D + + + ++ EM G+ PN TY+ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 57/289 (19%), Positives = 109/289 (37%), Gaps = 17/289 (5%)
Query: 44 RSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAG--- 100
+S+ L E + S NP+ H S + P S + E+ R
Sbjct: 9 QSIRLDEIRDS-----LSNPRLLHSPRKFSLRGRRTKTPFSSISCSSVEQGLKPRPRLKP 63
Query: 101 ---NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
+E++ R + + R + + I+ G L ++E ++A
Sbjct: 64 EPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPA 123
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
TY+ L++ K VK +Y + +G P+ +L + + D ++ E
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M E+ ++ + T++ D G EAF +F +M + + TF M+ + G
Sbjct: 184 MPER----NLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLG 238
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
+ + +L+ G + FV +LI Y K +D + +PE
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 8e-09
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
P+ ++TLI Y G + L ++ EMK G+KPN+ TY+ L+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 5e-08
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
PD T++++I +GKV EA +FNEM + G +PN++ + LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 9/233 (3%)
Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
A+++++ Y G + L +Y EM+ GV + T++ ++ R K + +
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
G + +L+ Y + ED +V+ M K ++ +N L+A + G
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRG 407
Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLT 301
+A E+FE M +E P+ TF ++++ C G + +F M E +P
Sbjct: 408 TKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466
Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
+I+ G+ D+ + R P P LL ELG+L
Sbjct: 467 CMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLA 516
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
T++++I G+V EA +F EM E G EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 12/216 (5%)
Query: 115 EKWRI-----DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
W + + + FS L+ Y AG FD L +Y M GV+P++ T+ +L T G
Sbjct: 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
+ + ++ + G + + +L+ Y + G D +S R + ++ +
Sbjct: 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMY--VKCG-DVVSA-RLVFDRMPRRDCI 254
Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
+N +++ + G E E+F M+ PD T +S+I+ C G M
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
+++ GF ++ V SLIQ Y + + +R+
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 4/185 (2%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G E A LY R+ ID FS +I+++ + + + G +++
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
L+D + R + ++ M L +WN +L+ YG G + ++ M
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLI-SWN---ALIAGYGNHGRGTKAVEMFERMIA 419
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
+G+ + + +L+ C G +++ +EIF+ M + +P + ++ MI + G +
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 280 EAEAM 284
EA AM
Sbjct: 480 EAYAM 484
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
TY +L+ Y + E+ L ++ EMK++G++ +V Y+ L+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 6e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
T++S+I+ GK+ EA +F EM E G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 9e-05
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
++ L+ AG+ D L V EEMKA G+KP
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 38/178 (21%)
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK----EKGMQLSVTLYNTLLAMCA 237
M + + P+ T S++ A G++ L REM + G + V++ N+L+ M
Sbjct: 279 MRELSVDPDLMTITSVISACEL--LGDERLG--REMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 238 DVGYTDEAFEIFEDMKSS------------------------------ENCQPDSWTFSS 267
+G EA ++F M++ +N PD T +S
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
+++ C+C G + + G + V +LI+ Y K + D + + +PE
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
TY +L+ +A E+ L +++EMKE+G++ V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
YNTL+ G +EA E+F++MK +PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 8e-04
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 257 NCQPDSWTFSSMITICSCR-GKVSEAEAMFNEM 288
+PD T++++I CR G+V EA + +EM
Sbjct: 2 GLKPDVVTYNTLID-GLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
LI +Y G+ + V++ M + + +N++L + +Y EM D+G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
+S + T++ ++R + R E + + G L + L+ + + G ++A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
+F+ M SW +++I G+ ++A MF M+ G PN
Sbjct: 381 NVFDRMPRKNLI---SW--NALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 51/252 (20%), Positives = 108/252 (42%), Gaps = 26/252 (10%)
Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
L +R + + NA LI++Y D L V+ + + ++I++ +++ +
Sbjct: 414 LAERKGLISYVVVANA---LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLR 466
Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA---RYGEDTLSVYREMKEKGMQL 224
R ++ +++M L PN T + L A R G++ ++ + G+
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE---IHAHVLRTGIGF 522
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
L N LL + G + A+ F + + D +++ ++T GK S A +
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQFN------SHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL-PELGITPDDRFCGCLLNVMT 343
FN M+E+G P+ SL+ ++ + + + + ITP+ + C+++++
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636
Query: 344 QTPKEELGKLVE 355
+ GKL E
Sbjct: 637 RA-----GKLTE 643
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSS 255
YN+L++ G +EA E+F++MK
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189
+ TYN LL + +A P + +EM +GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
+ YN LL A G D A + E+MK+S
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.89 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.79 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.59 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.45 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.27 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.15 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.97 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.97 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.88 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.64 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.57 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.52 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.47 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.39 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.38 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.36 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.34 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.2 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.2 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.15 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.07 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.89 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.86 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.85 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.84 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.75 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.68 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.44 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.42 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.36 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.36 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.34 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.29 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.27 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 97.26 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.02 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.99 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.99 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.92 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.85 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.83 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.82 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.74 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.63 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.54 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.42 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.34 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.26 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.14 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.12 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.0 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.89 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.87 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.79 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.68 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.18 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.15 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.12 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.02 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.0 | |
| PF01713 | 83 | Smr: Smr domain; InterPro: IPR002625 This family i | 94.84 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.77 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.74 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.72 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.65 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.44 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.36 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.89 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.31 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.3 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.16 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.14 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.14 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.99 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.92 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.62 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.45 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.11 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 91.93 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.69 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.54 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.76 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.46 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.66 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.44 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.43 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.84 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.41 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.87 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.8 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.7 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.5 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.94 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 84.93 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.6 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.49 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 84.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.66 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.41 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 83.1 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.92 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.47 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.44 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.64 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.42 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.72 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.12 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=515.89 Aligned_cols=437 Identities=19% Similarity=0.297 Sum_probs=280.0
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 172 (546)
+..|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE--KGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666654 3555666666666666666666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
+|.+.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 604 ~M~e~gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 604 MIHEYNI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 6665554 555556666666666666666666666655555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHHHhhhhhcchHHHHHHHHHhccc---CccchhhHHHH
Q 009025 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLI 405 (546)
Q Consensus 331 ~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-~~~~~L~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~~li 405 (546)
|..+|+.++.+|++.|+ ++|.++|+.|.+.+...+ ..++.|+.+|++.| ..++|.++|++|.. .||..+|++||
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G-~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN-QLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55555555555555555 555555555544322211 22355555555555 33555555554432 23444444444
Q ss_pred HHHHhcCCHH----------------------------------------------------------------------
Q 009025 406 DLCVNLNLLE---------------------------------------------------------------------- 415 (546)
Q Consensus 406 ~~~~~~g~~~---------------------------------------------------------------------- 415 (546)
.+|++.|+++
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 4444443333
Q ss_pred --------------------------------------------------------HHHHHHHHHHhcccccCccccCcc
Q 009025 416 --------------------------------------------------------NACKLLELGLTLEVYTDIQSRSPT 439 (546)
Q Consensus 416 --------------------------------------------------------~A~~~~~~m~~~g~~p~~~~~~~~ 439 (546)
+|+.+|++|...|+.|+....+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~- 920 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKS- 920 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccC-
Confidence 34444444445555555443333
Q ss_pred ceeecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceE-EEeecccccccchh---------HHHHHHHHhhhcCCCC
Q 009025 440 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLG-INTGHGKHKYSDKG---------LASVFESHLKELNAPF 509 (546)
Q Consensus 440 ~~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~-~~~~~~~~~~~~~~---------l~~~~~~~l~~l~~~f 509 (546)
.|.++++.++.|+|..++..|++.++.+++.|.++|.... +.| .++|.++..| +++++..+|++|..||
T Consensus 921 ~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~ 999 (1060)
T PLN03218 921 PIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT-EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPY 999 (1060)
T ss_pred ceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeecc-ccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 7999999999999999999999999999999999999888 444 5555555444 8999999999999999
Q ss_pred CCCCCCcceEEEeHHHHHHHhhcCC
Q 009025 510 HDSPDKVGWFLTTEAAAKSWLESRS 534 (546)
Q Consensus 510 ~~~~~~~G~~~~~~~~l~~wl~~~~ 534 (546)
+..++. |+|..++.++++||+..-
T Consensus 1000 ~~~~~~-g~~~~~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 1000 QGSESH-GKLRINGLSLRRWFQPKL 1023 (1060)
T ss_pred CCCCCC-CeEEeccHHHHHHhcccC
Confidence 999988 999999999999999874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-52 Score=448.16 Aligned_cols=365 Identities=20% Similarity=0.318 Sum_probs=335.6
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCc--------------------------------cCHHHHHHHHHHHHHcCC
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWR--------------------------------IDPNAFSTLIKLYGTAGN 136 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~--------------------------------~~~~~~~~li~~~~~~g~ 136 (546)
.+.....+++.|++++|+++|++|.+.|+. ||..+|+.+|.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 344555666889999999999999887753 788999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 216 (546)
+++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009025 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294 (546)
Q Consensus 217 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 294 (546)
|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|. .||..+|++||.+|++.|++++|.++|++|.+.|+.
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi-~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI-DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999986 454 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHH
Q 009025 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLL 372 (546)
Q Consensus 295 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-~~~~~L~ 372 (546)
|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ ++|.++++.|.+.+...+ ..++.|+
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999876554 4569999
Q ss_pred HhhhhhcchHHHHHHHHHhccc---CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccc
Q 009025 373 EEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS 449 (546)
Q Consensus 373 ~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~ 449 (546)
.+|+++| .+++|.++|+.|.. .|+..+||+||.+|++.|++++|.++|++|...|+.||..+|+ .++.++.
T Consensus 692 ~ay~k~G-~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~-----sLL~a~~ 765 (1060)
T PLN03218 692 GACSNAK-NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS-----ILLVASE 765 (1060)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHH
Confidence 9999999 56999999999863 6899999999999999999999999999999999999988864 3455555
Q ss_pred h-hhHHHHHHHH
Q 009025 450 L-GAALTALHIW 460 (546)
Q Consensus 450 ~-g~~~~a~~~~ 460 (546)
. |....|...+
T Consensus 766 k~G~le~A~~l~ 777 (1060)
T PLN03218 766 RKDDADVGLDLL 777 (1060)
T ss_pred HCCCHHHHHHHH
Confidence 4 5555555433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-51 Score=436.62 Aligned_cols=335 Identities=14% Similarity=0.201 Sum_probs=262.9
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
..+..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.|+.+|++.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 45566778999999999999998754 67899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
|+++.|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++
T Consensus 172 g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 172 GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999985 37889999999999999999999999999988888888888877777777777777777777
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (546)
..+.+.|. .+|..+|++||.+|++.|++++|.++|++|.+ +|.++||.||.+|++.|++++|+++|++|.+.|+.
T Consensus 248 ~~~~~~g~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 248 CCVLKTGV-VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHhCC-CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777775 77777777777777777777777777777754 57777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH-HHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHH
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY-VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 407 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~-~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~ 407 (546)
||..||+.++.+|++.|. ++|.+++..|.+.+...+. +.+.|+.+|+++| .+++|.++|+.|.. +|..+||+||.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~-~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-RMEDARNVFDRMPR-KNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC-CHHHHHHHHHhCCC-CCeeeHHHHHHH
Confidence 777777777777777777 7777777777776644333 4477777777777 44777777777754 466677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCcccc
Q 009025 408 CVNLNLLENACKLLELGLTLEVYTDIQSR 436 (546)
Q Consensus 408 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 436 (546)
|+++|+.++|+++|++|.+.|+.||..||
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 77777777777777777666666665554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=424.91 Aligned_cols=410 Identities=15% Similarity=0.168 Sum_probs=289.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
.+..|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 4567778888888888888886 357888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
.+.|.+++..|.+.|+.||..+|++||.+|+++|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888877777777777777777777666666666655532 3444555555555555555555555555
Q ss_pred HHhCCC----------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 009025 252 MKSSEN----------------------------------CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA------ 291 (546)
Q Consensus 252 m~~~~~----------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 291 (546)
|.+.|. +.|+..+|++||.+|++.|++++|.++|++|.+.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~ 459 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence 544442 1344444455555555555555555555544321
Q ss_pred ------------------------CC------------------------------------------------------
Q 009025 292 ------------------------GF------------------------------------------------------ 293 (546)
Q Consensus 292 ------------------------~~------------------------------------------------------ 293 (546)
++
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 11
Q ss_pred -----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH-c
Q 009025 294 -----------EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-S 360 (546)
Q Consensus 294 -----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~-~ 360 (546)
.+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|. +++.++|+.|.+ .
T Consensus 540 ~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 345666777888888888888888888888888888888888888888888888 888888888873 2
Q ss_pred --CCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCc
Q 009025 361 --NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP 438 (546)
Q Consensus 361 --~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 438 (546)
.|+. ..++.++.++++.| .+++|.+++++|+..|+..+|++|+.+|..+|+.+.|..+.+++.+. .|+...
T Consensus 620 gi~P~~-~~y~~lv~~l~r~G-~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~--- 692 (857)
T PLN03077 620 SITPNL-KHYACVVDLLGRAG-KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVG--- 692 (857)
T ss_pred CCCCch-HHHHHHHHHHHhCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcc---
Confidence 2332 34577888888888 55888888888888888888888888888888888888887777664 466333
Q ss_pred cceeecccccch-hhHHHHHHHHHHHHHHHHHcC-CCCCCceEEEeecccccccchh----HHHHHHHHhhhcCCCCCCC
Q 009025 439 TQWSLHLKSLSL-GAALTALHIWINDLSKALESG-EEFPPLLGINTGHGKHKYSDKG----LASVFESHLKELNAPFHDS 512 (546)
Q Consensus 439 ~~~~~~l~~~~~-g~~~~a~~~~~~~~~~~~~~g-~~~p~~~~~~~~~~~~~~~~~~----l~~~~~~~l~~l~~~f~~~ 512 (546)
.|.++...|.. |...++... .+.+.+.| ++.|+++||..+..+|.|..++ ..++|+..|.+|....+..
T Consensus 693 -~y~ll~n~ya~~g~~~~a~~v----r~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 693 -YYILLCNLYADAGKWDEVARV----RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred -hHHHHHHHHHHCCChHHHHHH----HHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 23333333433 444444422 22224677 8899999999999999998644 6789999888887666654
Q ss_pred CCCcceEEEeHHH
Q 009025 513 PDKVGWFLTTEAA 525 (546)
Q Consensus 513 ~~~~G~~~~~~~~ 525 (546)
||...+...
T Consensus 768 ----g~~~~~~~~ 776 (857)
T PLN03077 768 ----GLAGSESSS 776 (857)
T ss_pred ----CcCCCcchh
Confidence 666655443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=405.21 Aligned_cols=401 Identities=17% Similarity=0.245 Sum_probs=285.1
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-----------------
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY----------------- 159 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----------------- 159 (546)
+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 34444444444444443 235555555555555555555555555555555554444433
Q ss_pred ------------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 160 ------------------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 160 ------------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
|+|+++|++.|++++|.++|++|. .+|..+||+||.+|++.|++++|+++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 333333444444444444444432 2345566666666666666666666666776667
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
+.||..||++++.+|++.|++++|.+++++|.+.|. .||..+|++||.+|+++|++++|.++|++|.+ ||..+||
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 777777777777777777777777777777777664 67777777777777777777888888877764 7889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc-CCChh-HHHHHHHHhhhhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS-NSKLG-YVVKLLLEEQDIE 378 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~-~~~~~-~~~~~L~~~~~~~ 378 (546)
.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|. +++.++|+.|.+. +.... ..++.++.+|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 9999999999763 32222 3458888999999
Q ss_pred cchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccch-hhHHHHH
Q 009025 379 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTAL 457 (546)
Q Consensus 379 g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~ 457 (546)
| .+++|.++++++...|+..+|++|+.+|..+|+++.|..+++++.+. .|+. ...|..++..|.. |...+|.
T Consensus 476 G-~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~----~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 476 G-LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEK----LNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred C-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCC----CcchHHHHHHHHhCCCHHHHH
Confidence 9 56999999999999999999999999999999999999999998654 4652 2234556666666 5566665
Q ss_pred HHHHHHHHHHHHcC-CCCCCceEEEeecccccccchh----HHHHHHHHhhhcCCCCCCCCCCcceEEEeHHH
Q 009025 458 HIWINDLSKALESG-EEFPPLLGINTGHGKHKYSDKG----LASVFESHLKELNAPFHDSPDKVGWFLTTEAA 525 (546)
Q Consensus 458 ~~~~~~~~~~~~~g-~~~p~~~~~~~~~~~~~~~~~~----l~~~~~~~l~~l~~~f~~~~~~~G~~~~~~~~ 525 (546)
..+ + ++.+.| ++.|++.|+..+..+|.|..++ ..++|+..|.+|....+.. ||...+...
T Consensus 549 ~v~-~---~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~----gy~~~~~~~ 613 (697)
T PLN03081 549 KVV-E---TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY----GYVAEENEL 613 (697)
T ss_pred HHH-H---HHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHc----CCCCCcchh
Confidence 433 2 334567 7789999999999999988643 5678888887776555554 666555443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=420.79 Aligned_cols=354 Identities=15% Similarity=0.137 Sum_probs=311.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
..+..+++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|..+|++|. .||.++||++|.+|++.|
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENG 267 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCC
Confidence 3455677899999999999999999999999999999999999999999999999997 479999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++++|.++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
+|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 348 ~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 348 RME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 996 688999999999999999999999999999999999999888888888888888888888888888888777
Q ss_pred CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc--------------------------------CCChh------------
Q 009025 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKS--------------------------------NSKLG------------ 365 (546)
Q Consensus 331 ~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~--------------------------------~~~~~------------ 365 (546)
+..+|+.|+++|++.|+ ++|.++|+.|.+. .|+..
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence 77777777777777777 7776666554321 12221
Q ss_pred ---------------------H-HHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 366 ---------------------Y-VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 366 ---------------------~-~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
. +.+.|+.+|+++| .+++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 2267789999999 569999999998 67999999999999999999999999999
Q ss_pred HHhcccccCccccCccceeecccccch-hhHHHHHHHHH
Q 009025 424 GLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWI 461 (546)
Q Consensus 424 m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~ 461 (546)
|.+.|+.||..||+ .++.+++. |...++...+.
T Consensus 580 M~~~g~~Pd~~T~~-----~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 580 MVESGVNPDEVTFI-----SLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCCCCcccHH-----HHHHHHhhcChHHHHHHHHH
Confidence 99999999988864 35556665 55555554443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-19 Score=203.69 Aligned_cols=320 Identities=14% Similarity=0.068 Sum_probs=167.4
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 175 (546)
+...|++++|...|+.+.+... .+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..++..+.+.|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 3456666666666666665432 255566666666666666666666666665543 23444555555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.++++.+.+.. +.+...|..+..+|.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|..+|+++...
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666655432 2345555666666666666666666666555443 124445555555555666666666666555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 335 (546)
. +.+..++..++..+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...|+++.+.+ |+..++
T Consensus 665 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 665 K--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 3 33455555555555555555555555555554432 234444555555555555555555555554432 333444
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhHHHHHHHHhcC
Q 009025 336 GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLN 412 (546)
Q Consensus 336 ~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 412 (546)
..+..++.+.|+ ++|.+.++.+.+..|+...+...++..|...|+ .++|.+.|+++.. +.+..+++.++..+.+.|
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 444445555555 555555555544444444444444444444442 2445554444321 112334444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 009025 413 LLENACKLLELGLT 426 (546)
Q Consensus 413 ~~~~A~~~~~~m~~ 426 (546)
+ ++|+..++++.+
T Consensus 819 ~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 819 D-PRALEYAEKALK 831 (899)
T ss_pred c-HHHHHHHHHHHh
Confidence 4 444444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-19 Score=202.40 Aligned_cols=336 Identities=13% Similarity=0.042 Sum_probs=282.1
Q ss_pred CCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 009025 82 PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161 (546)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 161 (546)
|.++.... .....+.+.|++++|...|+++.+... .+...+..+...+...|++++|.++|+++.+.. +.+..++..
T Consensus 462 ~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 462 PDNASLHN-LLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred CCCcHHHH-HHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 33444333 334455588999999999999987643 367788889999999999999999999998865 457788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
+...+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+...|..+...|...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998864 3467788889999999999999999999998764 4478899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
+++|...|+++.+.. +.+...+..+...|.+.|++++|..+|+++.+... .+..++..++..+...|++++|..+++
T Consensus 617 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998765 56778899999999999999999999999987543 357889999999999999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--Cccc
Q 009025 322 RLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKK 398 (546)
Q Consensus 322 ~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~ 398 (546)
.+.+.+ ..+...+..+...+...|+ ++|.+.++.+....|+. ..+..++..+...|+ .++|.+.++.+.. +.+.
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~ 770 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGN-TAEAVKTLEAWLKTHPNDA 770 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCH
Confidence 998764 4466778888889999999 99999999999888877 445667788888884 5899988887643 2356
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..+..+...|.+.|++++|.++|+++.+..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 688999999999999999999999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-20 Score=184.36 Aligned_cols=300 Identities=11% Similarity=0.044 Sum_probs=222.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRA 204 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~ 204 (546)
...+...|++++|+..|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567788888888888888764 23455777888888888888888888888877532221 24577778888888
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 280 (546)
|++++|+.+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+. .+. ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 88888888888887653 33567788888888888888888888888877542 221 1235567777788888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
|.++|+++.+... .+...+..+...|.+.|++++|.++|+++.+.+......++..+..++...|+ ++|...++.+.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888876542 24567777788888888888888888888764322223567778888888888 888888888888
Q ss_pred cCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHh---cCCHHHHHHHHHHHHhcccccCc
Q 009025 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 360 ~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
..|+.... ..++..+.+.| ..++|..+++.+ ...|+...++.++..+.. .|+.++++.++++|.+.++.|+-
T Consensus 278 ~~p~~~~~-~~la~~~~~~g-~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 EYPGADLL-LALAQLLEEQE-GPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hCCCchHH-HHHHHHHHHhC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 77766443 67778888888 458899988764 445777788888888775 56899999999999998887774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-19 Score=176.82 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=238.9
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRP 172 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~ 172 (546)
+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3478999999999999998743 3667899999999999999999999999987532222 25688889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~ 248 (546)
++|..+|+++.+.. +.+..+++.++.+|.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|.++
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998863 34678999999999999999999999999988754332 22456778888999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009025 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328 (546)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 328 (546)
|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 203 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 203 LKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99998764 45677888999999999999999999999997643333567889999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh--hcchHHHHHHHHHhcc
Q 009025 329 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI--EGDFKKEATELFNSIS 393 (546)
Q Consensus 329 ~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~--~g~~~~~A~~~~~~~~ 393 (546)
.|+...+..+...+.+.|+ ++|..+++.+.+..|+...+...+...+.. .| ..+++..+++.+.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g-~~~~a~~~~~~~~ 345 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG-RAKESLLLLRDLV 345 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc-cchhHHHHHHHHH
Confidence 5777777889999999999 999999999999988877554444333211 23 3477887777654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=170.08 Aligned_cols=323 Identities=12% Similarity=0.055 Sum_probs=259.5
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
...+.|++++|+.+++........ +...+..++.+....|++++|+..|+++.+.. +.+...+..+...+.+.|++++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 344889999999999999887544 55666777778888999999999999998874 3456678888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
|...++++.+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|+..++.+..
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 999999998852 235678888999999999999999999988766433 33344333 347889999999999999877
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHhhhCCCCC
Q 009025 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD----VVRALNRLPELGITP 330 (546)
Q Consensus 255 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p 330 (546)
... .++...+..+...+...|++++|...|+++.+.... +...+..+...|...|++++ |...|++..+. .|
T Consensus 206 ~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P 281 (656)
T PRK15174 206 FFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS 281 (656)
T ss_pred cCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC
Confidence 642 344555566678889999999999999999976533 57788889999999999986 79999998874 45
Q ss_pred C-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCccch-hhHHHHH
Q 009025 331 D-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKA-YCNCLID 406 (546)
Q Consensus 331 ~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~~~-~~~~li~ 406 (546)
+ ...+..+...+...|+ ++|...++.+....|+...+...++..+...|+ .++|...|+.+. ..|+.. .+..+..
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~-~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ-YTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4 5678888999999999 999999999999999988888889999988884 599999998865 345443 3444677
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 009025 407 LCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 407 ~~~~~g~~~~A~~~~~~m~~~ 427 (546)
++...|+.++|...|+++.+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 889999999999999988654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-15 Score=162.42 Aligned_cols=357 Identities=13% Similarity=0.021 Sum_probs=266.8
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
..+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445889999999999999876 5788899999999999999999999999999874 335678888999999999999
Q ss_pred HHHHHHHHHHHCCCC----------------------------C----CHHHHHHH------------------------
Q 009025 174 QVKTIYKEMTDNGLS----------------------------P----NWNTYASL------------------------ 197 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~----------------------------p----~~~~~~~l------------------------ 197 (546)
+|+.-|......+-. | ........
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 998766544322100 0 00000000
Q ss_pred ---HHHH------HhcCChHHHHHHHHHHHHcC-C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009025 198 ---LRAY------GRARYGEDTLSVYREMKEKG-M-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266 (546)
Q Consensus 198 ---l~~~------~~~g~~~~A~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 266 (546)
+..+ ...+++++|.+.|++..+.+ . +.....|+.+...+...|++++|+..|++..... +-+...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHH
Confidence 0000 12257889999999998764 2 2245678888889999999999999999998864 44577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcC
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQT 345 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 345 (546)
.+...+...|++++|...|++..+... .+...|..+...|...|++++|+..|++.++. .|+ ...+..+..++.+.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHC
Confidence 999999999999999999999987643 25788999999999999999999999999874 454 56677788888899
Q ss_pred CH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCcc-ch-------hhHHHHHHHHhcCCHH
Q 009025 346 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK-KA-------YCNCLIDLCVNLNLLE 415 (546)
Q Consensus 346 g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~-~~-------~~~~li~~~~~~g~~~ 415 (546)
|+ ++|...++...+..|....++..++..+...|+ .++|++.|+... ..|+ .. .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99 999999999999999988888999999999895 599999998743 2222 11 1222233344579999
Q ss_pred HHHHHHHHHHhcccccCccccCccceeeccccc-chhhHHHHHHHHHHHHH
Q 009025 416 NACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWINDLS 465 (546)
Q Consensus 416 ~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~-~~g~~~~a~~~~~~~~~ 465 (546)
+|.+++++.+... |+.. ..|..+...+ ..|...+|+..+.+.++
T Consensus 526 eA~~~~~kAl~l~--p~~~----~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 526 EAENLCEKALIID--PECD----IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHhcC--CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999988764 5532 1222222222 34777777765544433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=160.61 Aligned_cols=329 Identities=15% Similarity=0.095 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LL 198 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll 198 (546)
-..+|..+.+.+-..|++++|+.+|+.|.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.....+ +.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 56688889999999999999999999999874 235678999999999999999999999988874 566554443 44
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
..+...|+.++|...|.+.++.... =.+.|+.|...+-..|++..|++.|++....+ +--...|..|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence 4555679999999999988876322 25778999999999999999999999998865 33456889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 279 SEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
++|...|.+.... +|+ .+.|..|...|...|..|-|+..|++.++ +.|+- ..|+.|.+++...|. .+|...|.
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 9999999888763 454 56777888888999999999999999887 46764 679999999999999 99999999
Q ss_pred HHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 356 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
+.....|......+.|+..|...| .+++|..+|...-. .|. ...+|.|...|-++|++++|+..+++.++.. |+.
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~-~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~f 421 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQG-KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTF 421 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhc-cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chH
Confidence 999999999999999999998888 56999988877533 333 4478999999999999999999999887643 652
Q ss_pred cccCccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 434 QSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 434 ~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
+..++.+...+.. |....|+..+...|.
T Consensus 422 ----Ada~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 422 ----ADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred ----HHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 1222333333333 666677766555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-15 Score=162.04 Aligned_cols=303 Identities=10% Similarity=0.008 Sum_probs=248.8
Q ss_pred cCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009025 80 VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159 (546)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 159 (546)
..|.++.+......... ..|++++|+..|+.+....+. +...+..+...+.+.|++++|++.|+++.+.. +.+...+
T Consensus 71 ~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~ 147 (656)
T PRK15174 71 TAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIF 147 (656)
T ss_pred hCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 46666766666555554 799999999999999987433 67789999999999999999999999998863 3456788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
..+..++...|++++|...++.+...... +...+..+ ..+.+.|++++|+..++.+.+....++...+..+...+...
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 88999999999999999999988775432 33344333 35788999999999999988765444555566667889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE----AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
|++++|+..|++..... +.+...+..+...|...|++++ |...|++..+.... +...+..+...+.+.|++++
T Consensus 226 g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 226 GKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999875 5678889999999999999986 89999999986433 57789999999999999999
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc
Q 009025 316 VVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393 (546)
Q Consensus 316 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~ 393 (546)
|+..+++..+. .|+ ...+..+..++.+.|+ ++|...++.+...+|........++.++...| ..++|...|+...
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G-~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAG-KTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence 99999999875 454 4567778889999999 99999999999999887665556677778888 4599999998753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-16 Score=154.26 Aligned_cols=326 Identities=15% Similarity=0.180 Sum_probs=259.6
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----------------
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI---------------- 157 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------------- 157 (546)
..+...|++++|+.+++.+.+...+ .+..|..+..++...|+.+.|.+.|.+.++. .|+..
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence 3455789999999999999987433 6778999999999999999999988888765 34432
Q ss_pred -------------------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009025 158 -------------------TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREM 217 (546)
Q Consensus 158 -------------------~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m 217 (546)
.|..|.-.+-..|+...|+..|++..+. .|+ ...|-.|...|...+.+++|...|.+.
T Consensus 201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 2333444445567777777777777663 344 467788888888888888888888877
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 009025 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297 (546)
Q Consensus 218 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 297 (546)
..... -..+.+..|...|...|.+|.|+..|++..+.. +--...|+.|..++-..|++.+|.+.|++.+..... ..
T Consensus 279 l~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-ha 354 (966)
T KOG4626|consen 279 LNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HA 354 (966)
T ss_pred HhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cH
Confidence 66521 146677778888888999999999999988864 344678999999999999999999999998874322 36
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 009025 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 375 (546)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~ 375 (546)
...+.|...|...|.+++|..+|....+ +.|+- ..++.|...|.+.|+ ++|...|++..++.|.....++.+|..|
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 7788899999999999999999998887 55654 468889999999999 9999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHhc-ccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 376 DIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 376 ~~~g~~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
...| .++.|...+.+. ...|. ...++.|...|...|+..+|+.-++..++.. ||.
T Consensus 433 ke~g-~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--PDf 489 (966)
T KOG4626|consen 433 KEMG-DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--PDF 489 (966)
T ss_pred HHhh-hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--CCC
Confidence 8888 458888777654 44443 4588999999999999999999999987754 774
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-15 Score=167.34 Aligned_cols=327 Identities=13% Similarity=0.063 Sum_probs=241.2
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH------------H
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYN------------N 161 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~------------~ 161 (546)
.+...|++++|+..|++..+.... +..++..|..+|.+.|++++|+..|++..+..... +...|. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 344789999999999999986433 78899999999999999999999999998763211 111121 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH----------
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT---------- 231 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------- 231 (546)
....+.+.|++++|+..|+++++.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCH
Confidence 2445778999999999999999864 336677888899999999999999999998875322 2333322
Q ss_pred --------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 232 --------------------------------LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 232 --------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 2334556789999999999988765 456777888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---------------------------------
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--------------------------------- 326 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------------------- 326 (546)
+|...|+++.+.... +...+..+...+...|+.++|+..++.+...
T Consensus 513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999998764322 3333333333334444444444444332110
Q ss_pred ------CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-c
Q 009025 327 ------GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-K 397 (546)
Q Consensus 327 ------~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~ 397 (546)
....+...+..+...+.+.|+ ++|...++.+.+..|+.......++..|...|+ .++|++.++.+.. .| +
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCC
Confidence 012334456677778888888 999999999999999988888888999988884 5999999988654 23 3
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
...+..+..++.+.|++++|.+++++++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 4567788889999999999999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-14 Score=154.04 Aligned_cols=329 Identities=14% Similarity=0.059 Sum_probs=252.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------------------
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV------------------- 152 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------- 152 (546)
....+.+.|++++|+..++..++.... +...|..+..+|...|++++|+.-|......+-
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 244 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAE 244 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 334566889999999999999987433 677899999999999999999876654432110
Q ss_pred ---------CCC----HHHHHHH---------------------------HHHH------HhcCChhHHHHHHHHHHHCC
Q 009025 153 ---------KPN----MITYNNL---------------------------LDTM------GRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 153 ---------~p~----~~~~~~l---------------------------l~~~------~~~g~~~~a~~~~~~m~~~g 186 (546)
.|. ....... +... ...+++++|.+.|++.++.+
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 245 SKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 000 0000000 0000 11257889999999998865
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009025 187 -LSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264 (546)
Q Consensus 187 -~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 264 (546)
..| +...++.+...+...|++++|+..|++..+... -+...|..+...+...|++++|+..|++..+.. +.+..+
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~ 401 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDI 401 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 223 456788888999999999999999999988642 246788899999999999999999999998875 567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHh
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMT 343 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~ 343 (546)
|..+...+...|++++|...|++.++.... +...+..+...+.+.|++++|+..|++..+. .| +...+..+..++.
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 999999999999999999999999986532 5777888999999999999999999999874 34 4678888999999
Q ss_pred cCCH-HHHHHHHHHHHHcCCChhHHH-------HHHHHhhhhhcchHHHHHHHHHhc-ccCcc-chhhHHHHHHHHhcCC
Q 009025 344 QTPK-EELGKLVECVEKSNSKLGYVV-------KLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNL 413 (546)
Q Consensus 344 ~~g~-~~a~~~~~~~~~~~~~~~~~~-------~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~ 413 (546)
..|+ ++|.+.++......|...... +..+..+...| ..++|.+++++. ...|+ ...+..|...+.+.|+
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 9999 999999999998877643211 11122222235 569999999874 33443 4478999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 009025 414 LENACKLLELGLTLE 428 (546)
Q Consensus 414 ~~~A~~~~~~m~~~g 428 (546)
+++|++.|++..+..
T Consensus 558 ~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 558 VDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-14 Score=162.57 Aligned_cols=347 Identities=12% Similarity=0.022 Sum_probs=252.0
Q ss_pred cCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCcc-CHHHHH------------HHHHHHHHcCChHHHHHHHHH
Q 009025 80 VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRI-DPNAFS------------TLIKLYGTAGNFDGCLNVYEE 146 (546)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~-~~~~~~------------~li~~~~~~g~~~~A~~~~~~ 146 (546)
.+|.++.+...+. ..+.+.|++++|+..|++..+..... ....|. .+...+.+.|++++|+..|++
T Consensus 298 ~~P~~~~a~~~Lg-~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 ANPKDSEALGALG-QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4566665544444 34448999999999999998764321 112222 224567788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH------------------------------
Q 009025 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS------------------------------ 196 (546)
Q Consensus 147 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~------------------------------ 196 (546)
+.+.. +.+...+..+..++...|++++|++.|+++++... .+...+..
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 98874 34567788889999999999999999999987532 12333222
Q ss_pred ------------HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009025 197 ------------LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264 (546)
Q Consensus 197 ------------ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 264 (546)
+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|+..|+++.+.. +.+...
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Confidence 233455679999999999999887533 57778889999999999999999999988754 334444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCCHHHHHHHHH
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEA---------------------------------------GFEPNLFVLTSLIQ 305 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------------~~~p~~~~~~~li~ 305 (546)
+..+...+...++.++|...++.+... ....+...+..+..
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 433333344445555554444332110 11234556777888
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHH
Q 009025 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~ 384 (546)
.+.+.|++++|+..|++..+.. ..+...+..+...+...|+ ++|.+.++.+.+..|+.......++..+...|+ .++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~-~~e 689 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD-TAA 689 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC-HHH
Confidence 9999999999999999999753 2256788899999999999 999999999999888887777888888888884 599
Q ss_pred HHHHHHhcccC-c-------cchhhHHHHHHHHhcCCHHHHHHHHHHHH-hcccccCcc
Q 009025 385 ATELFNSISKD-V-------KKAYCNCLIDLCVNLNLLENACKLLELGL-TLEVYTDIQ 434 (546)
Q Consensus 385 A~~~~~~~~~~-~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ 434 (546)
|.++++.+... + +...+..+...+...|++++|+..|++.+ ..|+.|..+
T Consensus 690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p 748 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRP 748 (1157)
T ss_pred HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCC
Confidence 99999987532 1 12356667888999999999999999986 455665543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-13 Score=144.39 Aligned_cols=327 Identities=12% Similarity=0.086 Sum_probs=196.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|+.++|++++....... ..+...+..+...+.+.|++++|..+|++..+.. +.+...+..+..++...|++++|+.
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666777776666665421 3344456666666677777777777777666542 2334555566666666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-------------
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE------------- 244 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~------------- 244 (546)
.++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...|..++
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 776666642 22344 666666666667777777777666665322 34444445555544444443
Q ss_pred ---------------------------------HHHHHHHHHhCCCCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHH
Q 009025 245 ---------------------------------AFEIFEDMKSSENCQPDSW-TFS----SMITICSCRGKVSEAEAMFN 286 (546)
Q Consensus 245 ---------------------------------A~~~~~~m~~~~~~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~ 286 (546)
|++.++.+.+...-.|+.. .+. ..+.++...|++++|...|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444443200022211 111 11234456688888888888
Q ss_pred HHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 009025 287 EMLEAGFE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP---DDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361 (546)
Q Consensus 287 ~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~ 361 (546)
++.+.+.. |+. .-..+...|...|++++|+..|+++.+..... .......+..++...|+ ++|..+++.+....
T Consensus 262 ~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 262 RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 88876532 332 12224667888888888888888876532111 12345556667777777 88888888887765
Q ss_pred CC---------------hhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 362 SK---------------LGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 362 ~~---------------~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
|. .......++..+...| ..++|+++++++.. .| +...+..++..+...|++++|++.++++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 52 1123355666666667 45888888887543 23 4557888888888888888888888887
Q ss_pred HhcccccCc
Q 009025 425 LTLEVYTDI 433 (546)
Q Consensus 425 ~~~g~~p~~ 433 (546)
++.. |+.
T Consensus 420 l~l~--Pd~ 426 (765)
T PRK10049 420 EVLE--PRN 426 (765)
T ss_pred HhhC--CCC
Confidence 7654 664
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.9e-13 Score=143.25 Aligned_cols=334 Identities=10% Similarity=0.023 Sum_probs=248.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|..+|+...+.. +.+...+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+
T Consensus 55 lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~ 131 (765)
T PRK10049 55 VAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGR 131 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCC
Confidence 3345558899999999999988763 2357778888899999999999999999998763 34555 8888888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH--------------------------------------
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV-------------------------------------- 213 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~-------------------------------------- 213 (546)
.++|+..++++.+... .+...+..+..++.+.+..++|++.
T Consensus 132 ~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 132 HWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 9999999999998642 2455556666666666665544443
Q ss_pred --------HHHHHHc-CCCcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 214 --------YREMKEK-GMQLSVT-LY----NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 214 --------~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+...|+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 3343322 1112111 11 111345567799999999999999876311332 2233577899999999
Q ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-----------CCCCH---HHHHHHHHHH
Q 009025 280 EAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-----------ITPDD---RFCGCLLNVM 342 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~t~~~ll~~~ 342 (546)
+|..+|+++.+..... ....+..+..++.+.|++++|..+++++.+.. -.|+. ..+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999988643221 13456677778899999999999999998642 12342 3455677788
Q ss_pred hcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Ccc-chhhHHHHHHHHhcCCHHHHHH
Q 009025 343 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVNLNLLENACK 419 (546)
Q Consensus 343 ~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~ 419 (546)
...|+ ++|.+.++++....|....++..++..+...| ..++|++.+++... .|+ ...+-.++..+.+.|++++|..
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 88899 99999999999999999888899999998888 46999999998653 454 5577788889999999999999
Q ss_pred HHHHHHhcccccCc
Q 009025 420 LLELGLTLEVYTDI 433 (546)
Q Consensus 420 ~~~~m~~~g~~p~~ 433 (546)
+++++++.. |+.
T Consensus 449 ~~~~ll~~~--Pd~ 460 (765)
T PRK10049 449 LTDDVVARE--PQD 460 (765)
T ss_pred HHHHHHHhC--CCC
Confidence 999998754 663
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-13 Score=141.67 Aligned_cols=342 Identities=12% Similarity=0.062 Sum_probs=224.5
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 160 (546)
.|..+.......+..+ +.|+++.|+..|++..+....-.+..+ .++..+...|+.++|+..+++..... ........
T Consensus 30 ~p~~~~~~y~~aii~~-r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRA-RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHH-hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 4444554444444444 888888888888888876322112233 77777777788888888887777211 12222333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.+...+...|++++|.++|+++.+... -+...+..++..|...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 334567777888888888888877642 24566666777777778888888877777665 344444434433343455
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHH------------------------------------------------------
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFS------------------------------------------------------ 266 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~------------------------------------------------------ 266 (546)
+..+|++.++++.+.. +-+...+.
T Consensus 184 ~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 5555777777776653 12222221
Q ss_pred -----------------------------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009025 267 -----------------------------------SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 267 -----------------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 311 (546)
=.+-++...|++.++++.|+.|...+...-..+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 112245566777777777877777665434456677888899999
Q ss_pred ChhHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC---------------ChhHHHHH
Q 009025 312 RTDDVVRALNRLPELG-----ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS---------------KLGYVVKL 370 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~---------------~~~~~~~~ 370 (546)
+.++|..+|.++.... ..++......|.-++...++ ++|..+++.+.+..| +.......
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999886532 12233445778888888998 999999988887433 23334455
Q ss_pred HHHhhhhhcchHHHHHHHHHhccc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 371 LLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 371 L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
++..+.-.| .+.+|++.++++.. +.|...+..+.+.+...|.+.+|.+.++.+... .|+.
T Consensus 422 ~a~~~~~~g-dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 422 LVQSLVALN-DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 666666667 45999999988753 346678889999999999999999999777655 3653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-12 Score=118.27 Aligned_cols=305 Identities=18% Similarity=0.213 Sum_probs=222.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+..+|.+||.++++--..++|.++|++..+...+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 788999999999999999999999999988877899999999998754332 3889999999999999999999999
Q ss_pred HHHhcCChHHH----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC----C---CCCCCHHHHHH
Q 009025 200 AYGRARYGEDT----LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE-AFEIFEDMKSS----E---NCQPDSWTFSS 267 (546)
Q Consensus 200 ~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~---~~~~~~~~~~~ 267 (546)
+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... . ..+.|..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999988755 5678899999999999999999999999888744 55555555432 1 11335566778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEA----GFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~----~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 340 (546)
.+..|.+..+.+.|.++..-+... -+.|+ ..-|..+....++....+.-+..|+.|+-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 888999999999999987766532 12233 23466778888999999999999999997767889999999999
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHH-HHHHHhhhhhc-c------------hHHHHHHHHHh-------ccc-Ccc
Q 009025 341 VMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEG-D------------FKKEATELFNS-------ISK-DVK 397 (546)
Q Consensus 341 ~~~~~g~-~~a~~~~~~~~~~~~~~~~~~-~~L~~~~~~~g-~------------~~~~A~~~~~~-------~~~-~~~ 397 (546)
+..-.+. +-.-+++..+...+......+ .-+...+++.. + ..+-|..+++. +.. +-.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 8888877 555556555554443222211 11111111110 0 00111112211 111 123
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
....+..+-.+.+.|..++|.++|....+.+
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 3466777788899999999999999987555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-11 Score=130.59 Aligned_cols=332 Identities=12% Similarity=0.076 Sum_probs=249.0
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
..+...|++++|+++|+.+.+.... ++..+..++..|.+.++.++|++.++.+... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 3555779999999999999887544 5777778888889999999999999998876 566666655555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------------------------------------
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR-------------------------------------- 215 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-------------------------------------- 215 (546)
+|++.++++.+.. +-+...+..++.++.+.|-...|.++..
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6999999998864 2356666777777776665444443332
Q ss_pred ----------HHHHc-CCCcCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 216 ----------EMKEK-GMQLSV-----TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 216 ----------~m~~~-g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.+... +..|.. .+.--.+.++...|++.++++.|+.+...+. +....+-..+.++|...++.+
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcH
Confidence 22221 111211 1222345677889999999999999998885 445567889999999999999
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-----------CCCH---HHHHHHHH
Q 009025 280 EAEAMFNEMLEAG-----FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-----------TPDD---RFCGCLLN 340 (546)
Q Consensus 280 ~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~t~~~ll~ 340 (546)
+|..+|..+.... ..++......|.-+|...+++++|..+++++.+... .||+ ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999997643 122444467899999999999999999999987311 2332 23455677
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHH
Q 009025 341 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENA 417 (546)
Q Consensus 341 ~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A 417 (546)
.+...|+ .+|.+.++.+....|....+...++..+...| ...+|++.++.... .| +..+...++.++...|++++|
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 7788898 99999999999999999999999999999888 67999999977543 33 455777888899999999999
Q ss_pred HHHHHHHHhcccccCc
Q 009025 418 CKLLELGLTLEVYTDI 433 (546)
Q Consensus 418 ~~~~~~m~~~g~~p~~ 433 (546)
..+.+...+.- |+.
T Consensus 504 ~~~~~~l~~~~--Pe~ 517 (822)
T PRK14574 504 ELLTDDVISRS--PED 517 (822)
T ss_pred HHHHHHHHhhC--CCc
Confidence 99998887654 663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-11 Score=131.42 Aligned_cols=323 Identities=10% Similarity=0.035 Sum_probs=243.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---h
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKR---P 172 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~---~ 172 (546)
..+...++.+.++.|-+.. .-+....-.+--...+.|+.++|..+|+..... ...++....+-++..+.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 4466667777777776652 226666666677778899999999999988762 123345555567777777665 2
Q ss_pred hHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 009025 173 WQVKTI----------------------YKEMTDN-GL-SP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226 (546)
Q Consensus 173 ~~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 226 (546)
..+..+ .+..... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence 223222 2222211 11 23 57788888888877 8999999988888776 3565
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
.....+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...|++..+.+.. +...+..+...
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~ 585 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Confidence 44444555567899999999999998664 455566778888999999999999999999886522 33333344445
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 385 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A 385 (546)
+...|++++|...|++..+ +.|+...+..+..++.+.|+ ++|...++.....+|+...+...++..+...|+ .++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHH
Confidence 5566999999999999987 45788889999999999999 999999999999999999999999999999895 5999
Q ss_pred HHHHHhcc-cCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 386 TELFNSIS-KDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 386 ~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
++.+++.. ..| +...+..+..++...|++++|+..|++.++.. |+.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~ 710 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQ 710 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC
Confidence 99998754 334 46689999999999999999999999998765 664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-12 Score=125.97 Aligned_cols=295 Identities=11% Similarity=-0.007 Sum_probs=217.7
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 124 FSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 124 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
+..+..+.. ..|+++.|.+.+.+..+. .|+.. .+-....+..+.|+.+.|.+.+.+..+....++....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344444443 569999999999888776 35543 4445567788889999999999998775322222344445788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHH---HHhcC
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MITI---CSCRG 276 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-li~~---~~~~g 276 (546)
+...|+++.|...++.+.+.... +...+..+...+.+.|++++|.+++..+.+.+. .+...+.. -..+ ....+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988633 678888999999999999999999999998874 34333321 1111 13333
Q ss_pred CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH-HHHHHHHh--cCCH-HH
Q 009025 277 KVSEAEAMFNEMLEAGF---EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLLNVMT--QTPK-EE 349 (546)
Q Consensus 277 ~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~--~~g~-~~ 349 (546)
..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+. .||.... ..++..+. ..++ +.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH
Confidence 33334445555554322 137888999999999999999999999999975 3554321 01222222 2344 88
Q ss_pred HHHHHHHHHHcCCChh--HHHHHHHHhhhhhcchHHHHHHHHH---hcccCccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 350 LGKLVECVEKSNSKLG--YVVKLLLEEQDIEGDFKKEATELFN---SISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~--~~~~~L~~~~~~~g~~~~~A~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+.+.++...+..|+.. .+...++..+.+.|+ .++|.+.|+ .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8889999999999988 788999999999995 599999999 3445778778889999999999999999999986
Q ss_pred Hh
Q 009025 425 LT 426 (546)
Q Consensus 425 ~~ 426 (546)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 53
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-11 Score=114.43 Aligned_cols=331 Identities=17% Similarity=0.259 Sum_probs=242.2
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 172 (546)
+..+|+--..+.|.+++++......+.+..+||.+|.+-.-.. -.+++.+|....+.||..|+|+++.+.++.|++
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 3445577889999999999999888999999999997755432 278999999999999999999999999999988
Q ss_pred hH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCC----cCHHHHHHHHHHHHhc
Q 009025 173 WQ----VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED-TLSVYREMKE----KGMQ----LSVTLYNTLLAMCADV 239 (546)
Q Consensus 173 ~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~----~g~~----~~~~~~~~li~~~~~~ 239 (546)
+. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++ -|...|...+..|.+.
T Consensus 290 ~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l 369 (625)
T KOG4422|consen 290 EDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSL 369 (625)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHh
Confidence 66 56789999999999999999999999999888754 4444444432 2222 2556778888899999
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009025 240 GYTDEAFEIFEDMKSSEN---CQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 313 (546)
.+.+-|.++..-+..... +.|+ ..-|..+....+.....+.-...|+.|.-.-+-|+..+...++.+..-.|++
T Consensus 370 ~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 370 RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRL 449 (625)
T ss_pred hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcc
Confidence 999999988877654321 1233 2345677888889999999999999999887788999999999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-------HHHH--------HHHHHHH------HcCCChhHHHHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-------EELG--------KLVECVE------KSNSKLGYVVKLLL 372 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-------~~a~--------~~~~~~~------~~~~~~~~~~~~L~ 372 (546)
+-.-+++.+++..|-.-+.....-++..+++... ++.- .+++..+ +...-....++.++
T Consensus 450 e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia 529 (625)
T KOG4422|consen 450 EVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIA 529 (625)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHH
Confidence 9999999999888755555555555555554331 1111 1111110 01112233445555
Q ss_pred HhhhhhcchHHHHHHHHHhcccC----ccchhhH---HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 373 EEQDIEGDFKKEATELFNSISKD----VKKAYCN---CLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 373 ~~~~~~g~~~~~A~~~~~~~~~~----~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..+.+.| ..++|.++|.-+... |-....| -|++.-.+.+....|..+++.|...+
T Consensus 530 ~Ll~R~G-~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 530 ILLLRAG-RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHcc-hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 5556667 559999998877432 2233455 45556678888999999999986554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-11 Score=132.22 Aligned_cols=319 Identities=10% Similarity=0.035 Sum_probs=246.5
Q ss_pred hcCCHHHHHHHHHHHHhC--CCccCHHHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHC
Q 009025 98 RAGNVEMAFGLYDRARNE--KWRIDPNAFSTLIKLYGTAGN---FDGCLNV----------------------YEEMKAI 150 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~--g~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~ 150 (546)
+.|+.++|.++|+..... ...++.....-|+..|.+.+. ..++..+ ++.....
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 789999999999998772 234456666688888888876 3334333 1111111
Q ss_pred -CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 009025 151 -GV-KP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226 (546)
Q Consensus 151 -g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 226 (546)
+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|+..|+++... .|+.
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 11 33 56788888888776 8888999988887765 366555445555667899999999999998665 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|...|++..+. .|+...|..+..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~ 618 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 567777888999999999999999998865 444444445555556679999999999999975 4678889999999
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~ 384 (546)
+.+.|++++|+..|++..+. .|+ ...+..+..++...|+ ++|...++...+..|+...+...++.++...|+ .++
T Consensus 619 l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~~e 695 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-MAA 695 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHH
Confidence 99999999999999999974 455 4567777788999999 999999999999999999999999999999995 599
Q ss_pred HHHHHHhcc-cCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 385 ATELFNSIS-KDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 385 A~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
|+..|++.. ..|+ ..+.........+..++++|.+-+++.....
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999998864 3443 3466677777888888999998888776544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=136.74 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+..++..+.+.++++++.++++.+......+.+...|..+...+.+.|+.++|.+++++..+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334444444444444444332221122333333333444444444444444444333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-11 Score=119.62 Aligned_cols=283 Identities=11% Similarity=0.055 Sum_probs=217.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLRAYGRARYGEDT 210 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A 210 (546)
.|+++.|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888766542 23333 333344458899999999999999874 45543333 346788999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHH
Q 009025 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS------WTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 211 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~ 284 (546)
.+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+.. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999887643 67888999999999999999999999999887522221 2344445544555566667777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~ 363 (546)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .||.... ++.+....++ +++.+..+...+..|+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7666432 2347888899999999999999999999999874 4555322 2233334466 8999999999999999
Q ss_pred hhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 364 LGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 364 ~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.......+++.+...++ .++|.+.|+... ..|+...|..|..++.+.|+.++|.+++++....
T Consensus 327 ~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGE-WQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99988999999999885 599999999865 4588888889999999999999999999987643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-14 Score=133.50 Aligned_cols=260 Identities=16% Similarity=0.193 Sum_probs=113.9
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
.....+.+.|++++|+++++...... ..-|...|..+...+...++++.|+..++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 33455558999999999997655443 233666677777777888999999999999988753 356677777777 789
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 248 (546)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876643 466778889999999999999999999987542 345788899999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009025 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328 (546)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 328 (546)
+++..+.. +-|......++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+..|++..+..
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99999875 4568889999999999999999999998887654 3456678899999999999999999999988742
Q ss_pred CCCHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 329 TPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 329 ~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
+.|..+...+..++.+.|. ++|.++.+.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3367788899999999999 88888776643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-11 Score=118.98 Aligned_cols=280 Identities=10% Similarity=0.004 Sum_probs=215.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTL-IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN--NLLDTMGRAKRPWQ 174 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~ 174 (546)
-.|+++.|.+.+....+.. .++..+..+ ..+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 5799999999888876642 233444333 44558899999999999999875 56654443 33567889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFE 247 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~ 247 (546)
|.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999875 346788999999999999999999999999987654222 244555655556667778888
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
+++.+.+.- +.+......+...+...|+.++|.+++++..+. .++... .++.+....++.+++++..+...+.
T Consensus 251 ~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 251 WWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-
Confidence 888876543 568888899999999999999999999998874 344422 2334444569999999999999875
Q ss_pred CCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 328 ITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 328 ~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
.|+. ..+..+...|.+.++ ++|.+.|+.+.+..|+.... ..|+..+.+.|+ .++|.+++++-
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~-~~~A~~~~~~~ 387 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHK-PEEAAAMRRDG 387 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCC-HHHHHHHHHHH
Confidence 3544 567788899999999 99999999999999987653 467788888884 59999988764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=121.91 Aligned_cols=281 Identities=13% Similarity=0.045 Sum_probs=210.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
+..+|+.+|+...+. +.-+......+..+|...+++++|+++|+.+.+... .-+..+|.+.+-.+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467899999886554 233446667788889999999999999999987521 12667888877655332 22222
Q ss_pred H-HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009025 214 Y-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 214 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
+ +.+.+.. +-...+|-++..+|.-.++.+.|++.|++....+ +-...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2333322 2357899999999999999999999999998865 45888999999999999999999999998886
Q ss_pred CCCCHHHHHH---HHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 009025 293 FEPNLFVLTS---LIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 293 ~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~ 367 (546)
.|...||+ +.-.|.+.++++.|.-.|+...+ |.| +.+....+...+.+.|. ++|..+++++...+|.....
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 45555554 56678999999999999998887 445 44667777778888888 99999999999988887665
Q ss_pred HHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 009025 368 VKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 431 (546)
Q Consensus 368 ~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 431 (546)
..--+..+...+ ..++|+..+++++. .| +..++-.+...|.+.|+.+.|+.-|.-|.+.+-++
T Consensus 560 ~~~~~~il~~~~-~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLG-RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhc-chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 444444444446 44899999988865 23 45688889999999999999999998887766433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-10 Score=104.78 Aligned_cols=286 Identities=14% Similarity=0.089 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLS 212 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~ 212 (546)
+.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|..|.|+++++.+.++.--+. ....-.|..=|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444421 12223333444444444444444444444443210000 1122233344444444444444
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 213 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+. .+. ..-|..|...+....+++.|..++.+.
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4444444321 1223344444444444444444444444444332 221 112334444444444444455544444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh--
Q 009025 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-- 365 (546)
Q Consensus 289 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-- 365 (546)
.+.+.+ .+..--.+.+.+...|+++.|++.++...+.+..--..+...|..+|.+.|+ ++....+..+.+..+...
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 443211 1222222333444445555555555544444333233344444445555554 444444433333222221
Q ss_pred HHHHHHHHhhhhhcchHHHHHHH-HHhcccCccchhhHHHHHHHHh---cCCHHHHHHHHHHHHhccc
Q 009025 366 YVVKLLLEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDLCVN---LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 366 ~~~~~L~~~~~~~g~~~~~A~~~-~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 429 (546)
.++.-++. ...| . ++|... .+.+...|+...+..||+.... .|...+-+.+++.|...-+
T Consensus 286 l~l~~lie--~~~G-~-~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 286 LMLADLIE--LQEG-I-DAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHH--HhhC-h-HHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 12211111 1223 2 444433 3445666776666677776543 3445666777777765444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-10 Score=104.04 Aligned_cols=301 Identities=10% Similarity=0.023 Sum_probs=238.6
Q ss_pred HHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 126 TLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 126 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
.+..+..+ .|+|..|.++..+-.+.+-. ....|..-..+.-+.||.+.+-.++.+..+.--.++...+-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34455544 58999999999998887633 3445666677788899999999999999886445677778888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHhcCC
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWTFSSMITICSCRGK 277 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~~li~~~~~~g~ 277 (546)
.|+++.|..-++++.+.+.. +.........+|.+.|++.....++..+.+.+..... ..+|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998887644 6788899999999999999999999999998852221 3467777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
.+.-...++..... .+-+...-..++.-+.+.|+.++|.++..+..+.+..|.. ..++ .+.+.++ ..-.+..+.
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhcCCCCchHHHHHHHH
Confidence 77766677665532 3345667778888999999999999999999988777762 2222 3445555 888888888
Q ss_pred HHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCcc
Q 009025 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 434 (546)
Q Consensus 357 ~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 434 (546)
-.+..|+....+..||..|.+.+ ...+|.+.|+.. ...++...|+-+.+++.+.|+..+|.++.++.+..-..|+.+
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888899999999998 459999999864 567888999999999999999999999999988666666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=122.24 Aligned_cols=279 Identities=13% Similarity=0.104 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTI 178 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 178 (546)
+..+|...|..++.+ +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+. .++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 566777777775554 22244566677788888888888888888877652 112566777777654322 12222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 179 Y-KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 179 ~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
+ +.+.+. -+-...+|-++.++|.-+++.+.|++.|++..+.+.. ..++|+.+..-+....++|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 1234678888888888888888888888887776322 56778888777888888888888888776432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 337 (546)
+.+-..|--|...|.+.++++.|+-.|++..+-+.. +.+....+...+-+.|+.|+|+.+|++....+.+ |...-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 233344555677788888888888888887775443 5566666677777788888888888887754322 3333333
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
-...+...++ ++|...++++.+.-|+...++.+++..|-+.|+. +.|+.-|.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~-~~Al~~f~~ 616 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT-DLALLHFSW 616 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc-hHHHHhhHH
Confidence 3444555556 8888888888888888888888888888777743 666655543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-10 Score=102.92 Aligned_cols=276 Identities=17% Similarity=0.170 Sum_probs=212.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------ITYNNLLD 164 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~ 164 (546)
+.+.++ -..+.++|.++|-+|.+.... +..+.-+|.+.|-+.|..++|+.+.+.+.+. ||. ...-.|..
T Consensus 41 ~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 41 KGLNFL-LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGR 115 (389)
T ss_pred hHHHHH-hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHH
Confidence 444444 567889999999999986322 5556678899999999999999999998874 442 23445666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcC
Q 009025 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV----TLYNTLLAMCADVG 240 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 240 (546)
-|...|-+|.|+++|..+.+.|. .-......|+..|-...+|++|+++-+++...+..+.. ..|..+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 78889999999999999988653 34667888999999999999999999998887544332 34556666667788
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 320 (546)
+.+.|..++++....+ +..+..-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+
T Consensus 195 ~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999998876 55666666788899999999999999999998775555677889999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 321 NRLPELGITPDDRFCGCLLNV-MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 321 ~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
.++.+....++... .+-.. ....|.+.|...+..-.+..|+...+..++.....
T Consensus 273 ~~~~~~~~g~~~~l--~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 273 RRAMETNTGADAEL--MLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHccCCccHHH--HHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 99987544444432 22221 13455578888888888888988877666654443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-10 Score=113.99 Aligned_cols=323 Identities=15% Similarity=0.124 Sum_probs=248.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
-.|++++|..++.++.+... .+...|.+|...|-+.|+.+++...+-.+.... +-|...|..+.....+.|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 45999999999999998754 488899999999999999999998776655543 4577899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL----YNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.|.+.++.. +++...+---...|-+.|+...|...|.++.....+-|..- --.++..+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999974 34666666678899999999999999999998754323322 2334566777788899999999888
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHHHHHHH
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---------------------------NLFVLTSLIQC 306 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---------------------------~~~~~~~li~~ 306 (546)
..+.-..+...++.++..|.+...++.|......+......+ +..+ -.+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 743335677788999999999999999999988887622222 2222 123334
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHHHhhhhhcchH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGDFK 382 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-~~~~~L~~~~~~~g~~~ 382 (546)
+.+....+....+.....+..+.| +...|.-+..++...|. .+|..++..+....+... .++-.++++|...| ..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~-e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG-EY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh-hH
Confidence 445555555555555555555444 44678999999999999 999999999887655444 35588899999888 45
Q ss_pred HHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 383 KEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 383 ~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
++|.+.++.... .| +..+--+|...+.+.|+.++|.+++..+.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999988643 34 34456678888999999999999999876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-10 Score=109.00 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=140.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
.+|++++|.+.|++....+ ..-....-.+.-.+-..|++++|++.|-++..- +.-+..+...+...|-...+...|+
T Consensus 502 ~ngd~dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3678889999999888654 222333334444577889999999999876542 1236777778888888888999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cC
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KD 395 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~ 395 (546)
+++.+.... +.-|+.+...|...|-+.|+ .+|.+.+-.-.+--|..-..+..|+.-|.... +.++|+.+|++.. ..
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcC
Confidence 998776653 44467788899999999999 88888776666666777777788887777666 7799999998865 47
Q ss_pred ccchhhHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q 009025 396 VKKAYCNCLIDLCV-NLNLLENACKLLELGLTL 427 (546)
Q Consensus 396 ~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 427 (546)
|+..-|-.||..|. +.|++.+|+++++...+.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88999999987764 789999999999987543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-10 Score=116.14 Aligned_cols=288 Identities=10% Similarity=0.028 Sum_probs=205.6
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKR 171 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~ 171 (546)
.....|+++.|.+.+....+. .|+.. .+-....++.+.|+++.|.+.|++..+.. |+. ...-.....+...|+
T Consensus 93 la~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCC
Confidence 334899999999999888776 34433 34455677888899999999999987653 444 344445778889999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH-HHHHHH---HhcCCHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN-TLLAMC---ADVGYTDEAFE 247 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~ 247 (546)
++.|.+.++.+.+.. +-+..+...+...|.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+
T Consensus 169 ~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 169 LHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999875 336778889999999999999999999999988654 333332 111111 22333333334
Q ss_pred HHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 248 IFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 248 ~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.+..+..... .+.+...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4444443320 024788899999999999999999999999988543322111 1222222344577888998888887
Q ss_pred hCCCCCCH---HHHHHHHHHHhcCCH-HHHHHHHH--HHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 325 ELGITPDD---RFCGCLLNVMTQTPK-EELGKLVE--CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 325 ~~~~~p~~---~t~~~ll~~~~~~g~-~~a~~~~~--~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
+. .|+. ....++...+.+.|+ ++|.+.|+ ...+..|+.... ..++..+.+.|+ .++|.+++++.
T Consensus 327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~-~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGD-KAEAAAMRQDS 396 (409)
T ss_pred Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCC-HHHHHHHHHHH
Confidence 63 4544 455688888999999 99999999 566677877664 488888888885 59999998873
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-10 Score=105.62 Aligned_cols=223 Identities=14% Similarity=0.172 Sum_probs=110.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHH---------
Q 009025 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYASL--------- 197 (546)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~l--------- 197 (546)
.+|-.....++++.-.+.....|++-+...-+....+.....|+++|+.+|+++.+...- -|..+|..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455556655555555555444433333344444555666666666666554210 134444444
Q ss_pred ----------------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 198 ----------------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 198 ----------------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.+-|+-.++.++|..+|++..+.+.. ....|+.|..-|....+...|++-++..++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 33344444555555555555544322 3444555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 335 (546)
. +.|-..|-.|..+|.-.+...-|+-.|++...... -|...|.+|.++|.+.++.++|++.|.+....| ..+...+
T Consensus 394 ~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 394 N--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred C--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 3 44555555555555555555555555555544221 134555555555555555555555555555433 1133444
Q ss_pred HHHHHHHhcCCH-HHHHHHHHH
Q 009025 336 GCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 336 ~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
..|.+.+-+.++ .+|.+.+++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555554 444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=113.15 Aligned_cols=329 Identities=15% Similarity=0.104 Sum_probs=204.7
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---- 170 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---- 170 (546)
.+...|++++|...|.+..+....--+..+--|...|.+.|+++.+...|+...+.. +-+..+..+|...|+..+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhH
Confidence 344778888888888777765322113344456777888888888888888877652 223445555555555553
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK----EKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
..+.|..++.+..+.- ..|...|-.+..+|-...-+ .++.+|.... ..+..+.....|.+...+...|++++|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 3355555555554432 23455555555444333222 2244433222 2333344555555555555555555555
Q ss_pred HHHHHHHhC---CCCCCCH----------------------------------------HHHHHHHHHHHhcCCHHHHHH
Q 009025 247 EIFEDMKSS---ENCQPDS----------------------------------------WTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 247 ~~~~~m~~~---~~~~~~~----------------------------------------~~~~~li~~~~~~g~~~~A~~ 283 (546)
..|+..... .. .+|. ..|.-++.+....+...+|..
T Consensus 473 ~~f~~A~~~~~~~~-n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVA-NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhc-CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHH
Confidence 555554433 00 1222 222223222223345666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC------------CH-HH
Q 009025 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT------------PK-EE 349 (546)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~------------g~-~~ 349 (546)
.++.....+ ..+...+..+...+.+...+..|.+-|....+. ...+|......|.+.|.+. +. +.
T Consensus 552 ~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 666666432 235555666666777777788887766666532 2346777777777766532 22 78
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCc--cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV--KKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
|.++|.++.+.+|.+..+.+-++..++.+| .+.+|..+|..+.+.. ...+|-.+..+|..+|++-.|++.|+...+.
T Consensus 631 Alq~y~kvL~~dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHhcCcchhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988899999999999 5699999999987632 4568999999999999999999999998765
Q ss_pred cc
Q 009025 428 EV 429 (546)
Q Consensus 428 g~ 429 (546)
-.
T Consensus 710 f~ 711 (1018)
T KOG2002|consen 710 FY 711 (1018)
T ss_pred hc
Confidence 44
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-10 Score=102.90 Aligned_cols=237 Identities=14% Similarity=0.103 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 236 (546)
.--+.+..+|.+.|.+.+|.+.|+.-++. .|-..||-.|-+.|.+..+.+.|+.+|.+-.+. ++.|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467888899999999999998888775 466778888889999999999999999888775 333555555677888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316 (546)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 316 (546)
-..++.++|.++++...+.. +.++....++...|.-.++.+-|+.+|+++++.|+. +...|+.+.-+|.-.+++|-+
T Consensus 301 eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 88899999999999988875 567777777888888889999999999999998876 888888888888888999988
Q ss_pred HHHHHHhhhCCCCCCH--HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc
Q 009025 317 VRALNRLPELGITPDD--RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393 (546)
Q Consensus 317 ~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~ 393 (546)
+..|.+....-..|+. .+|..+.......|+ .-|.+.|+-....+++.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h----------------------------- 428 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH----------------------------- 428 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-----------------------------
Confidence 8888887754334443 234444444444444 33333333333333322
Q ss_pred cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCcc
Q 009025 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 434 (546)
Q Consensus 394 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 434 (546)
...+|.|.-.-.+.|+.++|..+++.+... .|+++
T Consensus 429 ----~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~m~ 463 (478)
T KOG1129|consen 429 ----GEALNNLAVLAARSGDILGARSLLNAAKSV--MPDMA 463 (478)
T ss_pred ----HHHHHhHHHHHhhcCchHHHHHHHHHhhhh--Ccccc
Confidence 335666666667777777777777765443 36643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-10 Score=103.08 Aligned_cols=200 Identities=10% Similarity=0.036 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666677777777777777666543 2345566666666777777777777777666643 2244556666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
|...|++++|.+.+++...... ......+..+...+...|++++|.+.|++..... +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 7777777777777777665321 1123455556666777777777777777766653 344556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+|..++++..+. ...+...+..+...+...|+.++|..+++.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777776654 223455555666666677777777776666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-09 Score=101.04 Aligned_cols=320 Identities=13% Similarity=0.118 Sum_probs=177.2
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCh
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRID-PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRP 172 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~ 172 (546)
.+-++|.+++|++.|...+.. .|| +.-|.....+|...|+|+++.+---..++. .|+-+ .+.--..++-..|++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccH
Confidence 344999999999999999986 677 888899999999999999988877766664 34422 333333344444444
Q ss_pred hHH----------------------HHHHHHH---------HHCC--CCCCHHHHHHHHHHH------------------
Q 009025 173 WQV----------------------KTIYKEM---------TDNG--LSPNWNTYASLLRAY------------------ 201 (546)
Q Consensus 173 ~~a----------------------~~~~~~m---------~~~g--~~p~~~~~~~ll~~~------------------ 201 (546)
++| .+++.+. .+.+ +-|+.....+....+
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 333 2222211 1111 123322222221111
Q ss_pred ---------------------------------------------------------HhcCChHHHHHHHHHHHHcCCCc
Q 009025 202 ---------------------------------------------------------GRARYGEDTLSVYREMKEKGMQL 224 (546)
Q Consensus 202 ---------------------------------------------------------~~~g~~~~A~~~~~~m~~~g~~~ 224 (546)
.-+|+.-.|..-|+..+.....
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~- 358 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA- 358 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-
Confidence 1123333333333333333222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...|--+..+|....+.++..+.|.+..+.+ +-|..+|..-..++.-.+++++|..=|++.+..... +...|-.+-
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~ 435 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLC 435 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHH
Confidence 11224455555666666666666666666554 344455555555555566666666666666653321 344455555
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH-------HH-HHHHHhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY-------VV-KLLLEEQ 375 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~-------~~-~~L~~~~ 375 (546)
-+..+.++++++...|++.+++ +.--+..|+.....+...++ ++|.+.|+...+..|.... .+ ..++...
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 5555666777777777776653 33344566666677777766 7777777776666555221 11 2222211
Q ss_pred hhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 376 DIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 376 ~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
-+ + .+.+|..++++..+ +| ....|.+|...-.+.|+.++|+++|++..
T Consensus 515 wk-~-d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 WK-E-DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh-h-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 2 34666666665432 33 23466677777777777777777777643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-09 Score=102.39 Aligned_cols=301 Identities=13% Similarity=0.011 Sum_probs=211.2
Q ss_pred CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----------------------------HHHHH
Q 009025 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN-----------------------------LLDTM 166 (546)
Q Consensus 116 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----------------------------ll~~~ 166 (546)
+..-|...+-.....+-+.|....|++.|......- +-.=..|.. +..++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 445577666667777778888888888887765421 111111111 12233
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHH-
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTD- 243 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~- 243 (546)
-.....+++.+-.+.....|+.-+...-+-...+.-...++|+|+.+|+++.+...- -|..+|..++-.--...++.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 333455555555666666666544444444444555667777777777777665211 14566666553322211111
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
-|..+++ .+ +--..|...+.+-|.-.++.++|...|++.++.+.. ....|+.|..-|....+...|++.+++.
T Consensus 318 LA~~v~~----id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 318 LAQNVSN----ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHH----hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111111 11 334456667788888899999999999999986543 4678999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccc--hh
Q 009025 324 PELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK--AY 400 (546)
Q Consensus 324 ~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~--~~ 400 (546)
++-. +-|...|-.|.++|.-.+. .=|.-+|++.....|....++..||.+|.+.+ .+++|++.|.....-.|+ ..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~-~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN-RLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc-cHHHHHHHHHHHHhccccchHH
Confidence 9842 3367899999999999998 88999999999999999999999999999998 669999999887654444 78
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 401 CNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
+..|.+.|-+.++.++|...|++-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998888654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-08 Score=100.06 Aligned_cols=327 Identities=15% Similarity=0.081 Sum_probs=247.6
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
+++...++.|..+++..++. ++-+...|.+-...=-.+|+.+....++++- ...|+..+..-|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34555666667777666654 3446666766666666667777766666543 344666666666666666777777
Q ss_pred hhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
.--+..+....+..|+.- -..||..-.+.|.+.+.++-|..+|....+. ++-+...|...+..=-..|..++...+|
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 777777777666666542 2356777777788888888888888887765 2336677877777777788899999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (546)
++.... |+.....|......+-..|++..|..++....+.... +...|-.-+..-..+.+++.|..+|.+... ..
T Consensus 574 qkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 574 QKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 988876 3666777888888888899999999999999886654 678899999999999999999999998876 56
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh-cccCc-cchhhHHHHH
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS-ISKDV-KKAYCNCLID 406 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~-~~~~~-~~~~~~~li~ 406 (546)
|+...|..-++..--.+. ++|.++++...+.-|++..++-.+|..+...+ .++.|.+.|.. ...-| .+..|-.|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 777777766666666677 99999999999999999999999999988888 55888777655 33333 4568888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 407 LCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 407 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.--+.|..-+|..+|++..-.+ |+
T Consensus 728 leEk~~~~~rAR~ildrarlkN--Pk 751 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN--PK 751 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC--CC
Confidence 8889999999999999887766 55
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=114.96 Aligned_cols=232 Identities=9% Similarity=-0.007 Sum_probs=163.8
Q ss_pred cCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGT-----AGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMG---------RAKRPWQVKTIYKEMT 183 (546)
Q Consensus 119 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 183 (546)
.+...|...+.+-.. .+++++|+++|++..+. .|+ ...|..+..++. ..+++++|...+++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 466666666655322 24588999999999876 344 445655555443 2244788999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009025 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263 (546)
Q Consensus 184 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (546)
+... -+...+..+..++...|++++|+..|++..+.+.. +...+..+...+...|++++|+..+++..+.. +.+..
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 8642 36778888888888999999999999999887532 56778888889999999999999999998865 23333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH-HHHHHHHH
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVM 342 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~ 342 (546)
.+..++..+...|++++|...++++.+....-+...+..+..+|...|+.++|...+.++... .|+..+ .+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 444455556778899999999998876532224555777888888999999999999887653 455444 34444455
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009025 343 TQTPKEELGKLVECVEK 359 (546)
Q Consensus 343 ~~~g~~~a~~~~~~~~~ 359 (546)
...| +.+...++.+.+
T Consensus 486 ~~~g-~~a~~~l~~ll~ 501 (553)
T PRK12370 486 CQNS-ERALPTIREFLE 501 (553)
T ss_pred hccH-HHHHHHHHHHHH
Confidence 5555 455555555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=114.98 Aligned_cols=262 Identities=12% Similarity=-0.053 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGR-----AKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYG---------RARYGEDTLSVYREMK 218 (546)
Q Consensus 154 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~ 218 (546)
.+...|...+.+... .++.++|..+|++.++. .| +...|..+..+|. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345566666665322 23467899999999875 34 3455655555543 2345789999999998
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009025 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298 (546)
Q Consensus 219 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 298 (546)
+.+.. +...+..+...+...|++++|+..|++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 87543 67888888888999999999999999998875 566778888999999999999999999999886543 222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
.+..++..+...|++++|+..++++.+.. .|+ ...+..+..++...|+ ++|...+..+....|......+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 33344555667899999999999987643 343 4456667778888898 99999999888887777777788887777
Q ss_pred hhcchHHHHHHHHHhcc----cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 377 IEGDFKKEATELFNSIS----KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 377 ~~g~~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..| ++|...++.+. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g---~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS---ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH---HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 45655555543 23333333 44556667777777666 7776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-09 Score=100.09 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 45677788888899999999999999888753 33567788888889999999999999998887643 35677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
.+...|++++|.+.|++.............+..+...+...|++++|...|++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 889999999999999998865321234556777888888999999999999988875432 4667788888888899999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
+|...+++..+. ...+...+..+...+...|+ +++..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999888765 23344555556666666666 666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-12 Score=84.37 Aligned_cols=49 Identities=39% Similarity=0.666 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 167 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666666666666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-08 Score=95.19 Aligned_cols=322 Identities=12% Similarity=0.053 Sum_probs=270.5
Q ss_pred hcCCHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 009025 98 RAGNVEMAFGLYDRAR----NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKR 171 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~ 171 (546)
++|+.+...++.++.. ..|+..+...|-.=...|-+.|..-.+..+....+..|+.-. ..||+.-...|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 6788999888887754 468999999999999999999999999999999998887533 3588888999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
++-|..+|...++- ++-+...|......--..|..+....+|++....- +-....|-.....+-..|++..|..++.+
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999885 33466777777777777899999999999998863 34677888888889999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 009025 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331 (546)
Q Consensus 252 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 331 (546)
..+.. +-+...|..-++....+..+++|..+|.+.... .|+...|..-+..---.+..++|++++++.++. -|+
T Consensus 610 af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 610 AFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 99876 557889999999999999999999999998864 477788877777777789999999999998873 466
Q ss_pred H-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc--cCccchhhHHHHHH
Q 009025 332 D-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS--KDVKKAYCNCLIDL 407 (546)
Q Consensus 332 ~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~--~~~~~~~~~~li~~ 407 (546)
. ..|-.+...+-+.++ +.|...|..-.+.-|.....+-+|...--+.| .+-.|..++++.. .+.+...|-..|..
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 5 467777788888888 88888888888888888888888887777777 5689999998754 34567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 009025 408 CVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 408 ~~~~g~~~~A~~~~~~m~~~g 428 (546)
-.+.|+.+.|..+..++++.-
T Consensus 763 ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999888887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-08 Score=101.16 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=45.7
Q ss_pred HHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccc-hhhHHHHHHH
Q 009025 383 KEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS-LGAALTALHI 459 (546)
Q Consensus 383 ~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~-~g~~~~a~~~ 459 (546)
++|+++|.+.-. .| |...=|-+.-.++..|++.+|..+|.+..+... + ....|-.+.|.+- .|....|+..
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~----~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--D----FEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--h----CCceeeeHHHHHHHHHHHHHHHHH
Confidence 445555544322 21 233345555666777777777777777766553 1 2334544444443 4777888877
Q ss_pred HHHHHHHHH
Q 009025 460 WINDLSKAL 468 (546)
Q Consensus 460 ~~~~~~~~~ 468 (546)
+...+++..
T Consensus 703 Ye~~lkkf~ 711 (1018)
T KOG2002|consen 703 YENCLKKFY 711 (1018)
T ss_pred HHHHHHHhc
Confidence 777776543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=83.01 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-08 Score=90.35 Aligned_cols=282 Identities=12% Similarity=0.087 Sum_probs=223.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
-.|++.+|+++..+-.+.+-. ....|..-..+--+.|+.+.+-.++.+..+..-.++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 679999999999998777533 4455666677788899999999999999886335677778888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
-++++.+.+. -+........++|.+.|++.....++..|.+.|.--|. .+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999998764 46788999999999999999999999999998876544 468888887777777777777888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGIT 329 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~ 329 (546)
+....- +-+...-.+++.-+..+|+.++|.++..+..+++..|+.. ..-.+.+-++.+.-++..+.-.+ .+..
T Consensus 254 ~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 876653 5566777888899999999999999999999888776622 22345666777777777776654 3333
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
| ..+..|...|.+.+. .+|...++...+..|+... +..++..+.+.|+ ..+|.+.+++
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~-~~~A~~~r~e 386 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGE-PEEAEQVRRE 386 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCC-hHHHHHHHHH
Confidence 3 677888888889988 9999999988887776544 3777888888884 4777777665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-08 Score=99.74 Aligned_cols=328 Identities=12% Similarity=0.054 Sum_probs=244.0
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
..|-+.|++++++..+-.+-... +-|...|-.+.....+.|++++|.-.|.+.++.. +++...+---...|-+.|+..
T Consensus 181 ~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 181 EIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHH
Confidence 34458899999998776655544 3377999999999999999999999999999875 455555556778899999999
Q ss_pred HHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 248 (546)
.|..-|.++.....+.|.. ..-.+++.|...++-+.|.+.++.....+ -..+...++.++..|.+...++.|...
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 9999999999864322322 23344666777788899999998877632 223556788999999999999999998
Q ss_pred HHHHHhCCCCCCCHHHH----------------------H----HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 009025 249 FEDMKSSENCQPDSWTF----------------------S----SMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVL 300 (546)
Q Consensus 249 ~~~m~~~~~~~~~~~~~----------------------~----~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~ 300 (546)
..++..... .+|..-| . -+.-++......+....+.....+.. +.-+...|
T Consensus 339 i~~~~~r~~-e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~ 417 (895)
T KOG2076|consen 339 IVDDRNRES-EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLY 417 (895)
T ss_pred HHHHhcccc-CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHH
Confidence 888876221 2222222 1 12223333444444444555555555 33456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc
Q 009025 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379 (546)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 379 (546)
.-+.++|.+.|++.+|+.+|..+......-+...|-.+..++...|. ++|.+.|+.+....|+...+.-.|...+.+.|
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 99999999999999999999999976555567789999999999999 99999999999999999888888888888889
Q ss_pred chHHHHHHHHHhcccC-----------ccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 380 DFKKEATELFNSISKD-----------VKKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 380 ~~~~~A~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
+ .++|.+.++.+... ++...--...+.+.+.|+.++=..+...|+
T Consensus 498 ~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 498 N-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred C-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5 49999999986531 122234456677889999887655555554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-08 Score=92.96 Aligned_cols=298 Identities=15% Similarity=0.058 Sum_probs=221.5
Q ss_pred HHHHHHHHH--cCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 009025 125 STLIKLYGT--AGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLLRA 200 (546)
Q Consensus 125 ~~li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 200 (546)
...+.+++. .++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|+..... .|+. .......-.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH
Confidence 344555544 35555555554444332 34567778889999999999999999999998764 3332 222222334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
+.+.|+.++...+...+.... +-+...|-.-........++..|+.+-++.++.+ +.+...|..-.+.+...|+.++
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHH
Confidence 467788888888887776542 1133334444444556788999999999998876 6677888888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhc--CCHHHHHHHHHHH
Q 009025 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQ--TPKEELGKLVECV 357 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~~--~g~~~a~~~~~~~ 357 (546)
|.-.|+....... -+...|.-|+.+|...|++.+|..+-+...+. +.-+..+...+. ..|.- .++++|.+++++.
T Consensus 353 A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 9999998876321 36789999999999999999999887776542 233444544442 33333 3449999999999
Q ss_pred HHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 358 ~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.+.+|.+-..+..+++.+...| ..+++..++++. ...+|....+.|.+.+...+.+.+|++.|..++..+ |+
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg-~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~ 503 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEG-PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PK 503 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhC-ccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--cc
Confidence 9999999999999999888888 458999999875 456788999999999999999999999999988776 65
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-08 Score=95.63 Aligned_cols=288 Identities=13% Similarity=0.098 Sum_probs=207.8
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH-HHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTA-GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~-~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
..-+.++|+++.|.+++.-..+..-+.-...-|.|-. -|.+. .++..|...-+...... .-|......-.+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 3445599999999999888776543333333333322 23333 36777877777666443 234444444444556679
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++++|.+.|++.+...-.-....|| +.-.+-..|++++|+++|-++-.. +.-+..+...+...|....+...|++++-
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998764322223333 233567789999999999876532 12267777888899999999999999998
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
+.... ++-|.....-|...|-+.|+-..|.+.+-+--. -+.-|..+...|...|....-+++++.+|++..- ++|
T Consensus 583 q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 583 QANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred Hhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 87654 367888999999999999999999888755443 3556888888999999999999999999998764 789
Q ss_pred CHHHHHHHHHHHh-cCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHH
Q 009025 331 DDRFCGCLLNVMT-QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390 (546)
Q Consensus 331 ~~~t~~~ll~~~~-~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~ 390 (546)
+..-|..++..|. +.|+ ..|..+|+.+.+.-|.....+..|++.....| +.++.++-+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg--l~d~key~~ 717 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG--LKDAKEYAD 717 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc--chhHHHHHH
Confidence 9999998887776 5677 99999999998888887777777777776666 245544433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-07 Score=87.35 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHHH--------HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW--TFSSMIT--------ICSCRGKVSEAEAMFNEMLEAGFEPN 296 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~--------~~~~~g~~~~A~~~~~~m~~~~~~p~ 296 (546)
.+|--.++.-...|+.+...++|++.+..- +|-.. -|...|- .-....+.+.+.++|+..++. ++..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 344444555555566666666666665432 33111 1111111 112345666666666666552 2222
Q ss_pred HHHHHHHHHHH----HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHH
Q 009025 297 LFVLTSLIQCY----GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLL 371 (546)
Q Consensus 297 ~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L 371 (546)
.+||..+=-.| .+..++..|.+++...+ |.-|-..+|...|..-.+.+. +...++++..+.-+|.....+.-.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 34443332222 35566777777776655 567888888888888888888 999999999999999888887777
Q ss_pred HHhhhhhcchHHHHHHHHHhcccCcc----chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 372 LEEQDIEGDFKKEATELFNSISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 372 ~~~~~~~g~~~~~A~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+..-...|+ .+.|..+|+-...+|. ...|-+.|+.-...|.+++|..+++++++..
T Consensus 478 aElE~~Lgd-tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 478 AELETSLGD-TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHhhh-HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 666666674 4999999988766552 3478999999999999999999999987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=110.84 Aligned_cols=220 Identities=16% Similarity=0.165 Sum_probs=151.6
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 009025 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187 (546)
Q Consensus 108 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 187 (546)
++-.+...|+.|+.+||..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+..++++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 5667778899999999999999999999999888 8888876665556666666666666666665554
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHHHH----HcCC-----------------CcCHHHHHHHHHHHHhcCCHH
Q 009025 188 SPNWNTYASLLRAYGRARYGED---TLSVYREMK----EKGM-----------------QLSVTLYNTLLAMCADVGYTD 243 (546)
Q Consensus 188 ~p~~~~~~~ll~~~~~~g~~~~---A~~~~~~m~----~~g~-----------------~~~~~~~~~li~~~~~~g~~~ 243 (546)
.|-..+|+.|+.+|...||... +.+.+..+. ..|+ -||..+ .+.-....|.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHH
Confidence 4556666666666666666543 222111111 1111 112111 111111112222
Q ss_pred H------------------------------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 244 E------------------------------AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 244 ~------------------------------A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
. .+++......... .|+..+|..++..-...|+++.|..++.+|++.|+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 2 2222222222222 58999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009025 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 346 (546)
Q Consensus 294 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 346 (546)
..+.+-|..|+-+ .+...-+..+++-|.+.|+.|+..|+.-.+..+...|
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9998888888866 7888889999999999999999999988887777644
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-09 Score=94.25 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=195.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 204 (546)
+.|.++|.+.|-+.+|...|+.-.+. .|-+.||-.|-.+|.+..+++.|+.++.+-++. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57889999999999999999998876 688889999999999999999999999998875 333555555667888889
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+++++...| .-+...|+.+.-.|.-.+++|-++--
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998764 3367777778888889999999999999999999 57788999999999999999999999
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 009025 285 FNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361 (546)
Q Consensus 285 ~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~ 361 (546)
|++....--.|+ ...|-.+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|+ ++|..++.......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999886544444 4567778888889999999999999887643 2245678888777788888 88888888777766
Q ss_pred CChhH
Q 009025 362 SKLGY 366 (546)
Q Consensus 362 ~~~~~ 366 (546)
|+...
T Consensus 460 P~m~E 464 (478)
T KOG1129|consen 460 PDMAE 464 (478)
T ss_pred ccccc
Confidence 65443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-08 Score=97.76 Aligned_cols=234 Identities=20% Similarity=0.215 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSS-----ENC 258 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 258 (546)
..+...|..+|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999999999987654 21 22332 3344677889999999999999998642 211
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhh---CC
Q 009025 259 QP-DSWTFSSMITICSCRGKVSEAEAMFNEMLE---A--GF-EPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPE---LG 327 (546)
Q Consensus 259 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~ 327 (546)
.| -..+++.|..+|.+.|++++|...+++..+ . |. .|.+ ..++.++..|...+++++|..++++..+ .-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 345778888899999999999888887653 1 21 1222 2356777888999999999999987653 12
Q ss_pred CCCCH----HHHHHHHHHHhcCCH-HHHHHHHHHHHHc--------CCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-
Q 009025 328 ITPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKS--------NSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS- 393 (546)
Q Consensus 328 ~~p~~----~t~~~ll~~~~~~g~-~~a~~~~~~~~~~--------~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~- 393 (546)
+.++. .+++.|...+.+.|+ .+|.+++++++.. .+..+..++.|+..|...+ ...+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHH
Confidence 23333 479999999999999 9999999887652 2333456788888886666 4477777776532
Q ss_pred ------c-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 394 ------K-DVK-KAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 394 ------~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
. .|+ ..+|..|+..|.+.|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 223 3388999999999999999999998876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-07 Score=88.55 Aligned_cols=218 Identities=11% Similarity=-0.008 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHHhCCC-cc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 100 GNVEMAFGLYDRARNEKW-RI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 100 g~~~~A~~l~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
+..+.++.-+.++..... .| ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888886421 22 24568888889999999999999999998875 346789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
..|++.++... -+..++..+..++...|++++|++.|+...+.... +. ........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999998532 25678888888999999999999999999886432 22 12222223445678999999997765432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---F--EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
.++...+ .+. ....|+...+ +.++.+.+.. . .| ....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 --~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 --DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred --CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 222 2335555544 3555544311 1 11 23578888889999999999999999988743
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-08 Score=98.11 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-C
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI-----GV-KPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDN-----GLS-P 189 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p 189 (546)
+...|...|...|+++.|..++++..+. |. .|...+ .+.+...|...+++++|..+|+++... |-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445677777777777777777776543 21 233322 233555677777777777777777542 211 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC
Q 009025 190 -NWNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSV-TLYNTLLAMCADVGYTDEAFEIFEDMKSSEN--CQ 259 (546)
Q Consensus 190 -~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~ 259 (546)
-..+++.|-.+|.+.|++++|..++++..+. |. .+.+ ..++.+...|+..+++++|..+++...+.-. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1345566666777777777777766655431 11 1111 2355566667777777777777765443210 01
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhh---
Q 009025 260 PD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA----GF--EPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPE--- 325 (546)
Q Consensus 260 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 325 (546)
++ ..+++.|...|.+.|++++|.++|++.+.. +. .+. -..++.|...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 346677777777777777777777776542 11 111 23456667777777777777777765432
Q ss_pred -CCC-CCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 326 -LGI-TPDD-RFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 326 -~~~-~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
.|. .|+. .+|..|...|...|+ +.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 1222 456677777777777 66666665554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-07 Score=80.30 Aligned_cols=201 Identities=13% Similarity=0.020 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
+..-|.-.|.+.|+...|.+-+++.++... -+..++..+...|.+.|+.+.|.+.|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 344455566667777777777777666531 24456666666667777777777777766655322 4566666666667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
..|++++|...|++........--..+|..+.-+..+.|+.+.|.+.|++.++.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 777777777777766654432233456666666666777777777777766664322 2345555666666667777777
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~ 362 (546)
..++.....+. ++....-..|..-...|+ +.+.++=..+.+.-|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66666665443 555555555555555666 444444444444444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-07 Score=91.15 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=186.7
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hc--
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRID-PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG-RA-- 169 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~-- 169 (546)
+.+...|++++|++.++.-... -+| ..........+.+.|+.++|..+|+.+++.+ |+...|-..+..+. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4456889999999999876554 345 4456677889999999999999999999985 66665555544443 22
Q ss_pred ---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009025 170 ---KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 170 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 245 (546)
.+.+...++|+++...- |.......+.-.+..-..+ ..+..++..+..+|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24677788888887642 3333333332222221222 2445566667777754 3456666666655555555
Q ss_pred HHHHHHHHhCC-------------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 009025 246 FEIFEDMKSSE-------------NCQPDSW--TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGK 309 (546)
Q Consensus 246 ~~~~~~m~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 309 (546)
.+++....... .-+|... ++.-+...|-..|++++|++++++.++.. |+ +..|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 56665544220 1135553 44556677778888888888888888753 54 6677788888888
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC--Ch-----hHHH--HHHHHhhhhhc
Q 009025 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS--KL-----GYVV--KLLLEEQDIEG 379 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~--~~-----~~~~--~~L~~~~~~~g 379 (546)
.|++++|.+.++.....+.. |...-+.....+.+.|. ++|.+.+....+.+. .. .++| .-.+.+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888765422 55666667777778888 888888877766441 11 1223 55577777777
Q ss_pred chHHHHHHHHHhc
Q 009025 380 DFKKEATELFNSI 392 (546)
Q Consensus 380 ~~~~~A~~~~~~~ 392 (546)
+ ...|+..|..+
T Consensus 320 ~-~~~ALk~~~~v 331 (517)
T PF12569_consen 320 D-YGLALKRFHAV 331 (517)
T ss_pred h-HHHHHHHHHHH
Confidence 4 46676665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7e-07 Score=87.66 Aligned_cols=268 Identities=10% Similarity=-0.022 Sum_probs=167.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009025 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230 (546)
Q Consensus 151 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 230 (546)
+..-+........+-|...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.+|.+.- +-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 334556666666666777777777777777777652 4455666666667777777777666666776652 22567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
++.--|...|++.+|.++|.+....+ +.-...|..+...|+-.|.-+.|...+...-+.-.. ....+--+.--|.+.
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRT 393 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHh
Confidence 77777777777777777777766544 334556777777777777777777777665542110 111122233346667
Q ss_pred CChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHH-------cCCChhHHHHHHHHhhhhhcch
Q 009025 311 QRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEK-------SNSKLGYVVKLLLEEQDIEGDF 381 (546)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~-------~~~~~~~~~~~L~~~~~~~g~~ 381 (546)
+..+.|.+.|.+... +.|+ +...+-+.-.....+. .+|..+|+.... ..+.....++.||..|-+++ .
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-~ 470 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN-K 470 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-h
Confidence 777777777776654 4453 3444444444444555 777777666542 11123445677777777777 4
Q ss_pred HHHHHHHHHhcc--cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 382 KKEATELFNSIS--KDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 382 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
.++|+..++..- .+.+..++.++.-.|...|+++.|.+.|.+.+-
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 577777776643 233566777777777777777777777777643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-07 Score=87.22 Aligned_cols=221 Identities=12% Similarity=0.049 Sum_probs=105.9
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNG-LSPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
+..+.++.-+.+++... ..|+ ...|..+...|.+.|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555321 1111 233455555555566666666666555554322 4555555556666666666666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
+.|++..+.. +-+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666655543 3344555555555555566666666665555432 22211111111122344555555555443321
Q ss_pred CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhHH
Q 009025 327 GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNC 403 (546)
Q Consensus 327 ~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~ 403 (546)
..|+...+ .+.. ...|+ .++ ..+.. +.+.++.-.. +.....|..
T Consensus 195 -~~~~~~~~-~~~~--~~lg~~~~~-~~~~~----------------------------~~~~~~~~~~l~~~~~ea~~~ 241 (296)
T PRK11189 195 -LDKEQWGW-NIVE--FYLGKISEE-TLMER----------------------------LKAGATDNTELAERLCETYFY 241 (296)
T ss_pred -CCccccHH-HHHH--HHccCCCHH-HHHHH----------------------------HHhcCCCcHHHHHHHHHHHHH
Confidence 11221111 1111 11111 100 01111 1111100000 012347889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 404 LIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 404 li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+...+.+.|++++|...|++.++.+
T Consensus 242 Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 242 LAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998766
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-06 Score=87.21 Aligned_cols=286 Identities=16% Similarity=0.149 Sum_probs=197.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhc--
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA-SLLRAYGRA-- 204 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~-- 204 (546)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+...|. .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44568889999999999875544 33344566777888999999999999999999975 4555554 444444222
Q ss_pred ---CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 205 ---RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 205 ---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+ | .+|+.|-..|....+.+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv--P--slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV--P--SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHcChhHHHH
Confidence 25677888999887653 3333332232222222223 345667777788774 4 356677777776666666
Q ss_pred HHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHh
Q 009025 281 AEAMFNEMLEA----G----------FEPNLF--VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMT 343 (546)
Q Consensus 281 A~~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~ 343 (546)
...++...... + -.|... ++..+...|...|++++|+++.++.++. .|+ ...|..-...+.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 66666665532 1 124443 4466678889999999999999999985 466 467888888999
Q ss_pred cCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCc-cch--------hh--HHHHHHHHhc
Q 009025 344 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKA--------YC--NCLIDLCVNL 411 (546)
Q Consensus 344 ~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~-~~~--------~~--~~li~~~~~~ 411 (546)
+.|+ .+|...++.....+...-.+-+-.+..+.++| .+++|.+++..+.... +.. +| ..-..+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~-~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG-RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC-CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999998887765554455555556667 6799999988776533 111 33 4556789999
Q ss_pred CCHHHHHHHHHHHH
Q 009025 412 NLLENACKLLELGL 425 (546)
Q Consensus 412 g~~~~A~~~~~~m~ 425 (546)
|++..|++-|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999988777664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-07 Score=88.42 Aligned_cols=219 Identities=16% Similarity=0.130 Sum_probs=175.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
.-.|+.-.+..-|+..+.....++ ..|.-+..+|....+.++..+.|++..+.+.. +..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 446788889999999988654332 33778888999999999999999999887644 6677877778888889999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.=|++.++.. +-+...|..+.-+..+.++++++...|++.+++ ++--...|+.....+...+++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999876 567888888888889999999999999999875 4446789999999999999999999999988763
Q ss_pred C-----CCCCHHH--HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 327 G-----ITPDDRF--CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 327 ~-----~~p~~~t--~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
. +..+... -..++. +.-.++ .+|..++.+..+.+|.....+..|+..-...| .+++|+++|++.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~-~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG-KIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 1 1112211 111111 112355 99999999999999999999999999888888 569999999874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-06 Score=75.99 Aligned_cols=186 Identities=14% Similarity=0.022 Sum_probs=80.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.|+...|..-+++.++.... +..+|..+...|-+.|..+.|.+-|++..... +-+..+.|....-+|..|++++|..
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHH
Confidence 445555555555555444221 33344444444555555555555555444432 1233344444444444445555555
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.|++....-.- --..+|..+.-+..+.|+.+.|.+.|++..+.... ...+.-.+.....+.|++..|..+++.....+
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 44444443110 11234444444444444444444444444443211 12333344444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
.++..+.-..|+.-...|+-+.+.++=..+
T Consensus 204 --~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 204 --GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 244444444444444444444444433333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-06 Score=81.63 Aligned_cols=332 Identities=12% Similarity=0.152 Sum_probs=203.8
Q ss_pred chhhhcCCHHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 172 (546)
.++.++|++...+..|++.+.. .+.-....|...+......|-++-++.+|++.++. ++..-+-.|..++..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 4445788888899999887764 22223346777787777888888888888887753 333456666777777777
Q ss_pred hHHHHHHHHHHHC----------------------------------------CC--CCC--HHHHHHHHHHHHhcCChH
Q 009025 173 WQVKTIYKEMTDN----------------------------------------GL--SPN--WNTYASLLRAYGRARYGE 208 (546)
Q Consensus 173 ~~a~~~~~~m~~~----------------------------------------g~--~p~--~~~~~~ll~~~~~~g~~~ 208 (546)
++|.+.+...+.. |+ -+| ...|++|.+-|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 7776665544211 10 112 135788889999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC---------
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADV----------------G------YTDEAFEIFEDMKSSEN--------- 257 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~~~--------- 257 (546)
+|..+|++....- .++.-|+.+.++|++- | +++-.+.-|+.+...+.
T Consensus 266 karDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 266 KARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred HHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 9999998876541 2333333333333321 1 11222233333322210
Q ss_pred ---------------------------------CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 009025 258 ---------------------------------CQP------DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-- 296 (546)
Q Consensus 258 ---------------------------------~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-- 296 (546)
+.| -...|..+.+.|-..|+++.|..+|++..+-.+.--
T Consensus 344 Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 011 122345777888899999999999999887544321
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC----------C-------CHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009025 297 -LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT----------P-------DDRFCGCLLNVMTQTPK-EELGKLVECV 357 (546)
Q Consensus 297 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p-------~~~t~~~ll~~~~~~g~-~~a~~~~~~~ 357 (546)
..+|-.-.+.=.++.+++.|++++++.....-. | ....|..+++..-..|- +....+|+.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 234555555556778888999888776532111 1 11345555555555666 6777788888
Q ss_pred HHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc---cCccc-hhhHHHHHHHHhc---CCHHHHHHHHHHHHhcccc
Q 009025 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS---KDVKK-AYCNCLIDLCVNL---NLLENACKLLELGLTLEVY 430 (546)
Q Consensus 358 ~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~---~~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~ 430 (546)
.+...-...++...+..+-... .++++.+.+++-. .-|++ ..|+..+.-+.+. -+.++|..+|+++++ |+.
T Consensus 504 idLriaTPqii~NyAmfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 8766555555433333333333 6788888887632 22333 3888888776643 358899999999998 776
Q ss_pred cCc
Q 009025 431 TDI 433 (546)
Q Consensus 431 p~~ 433 (546)
|..
T Consensus 582 p~~ 584 (835)
T KOG2047|consen 582 PEH 584 (835)
T ss_pred HHH
Confidence 663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.6e-06 Score=81.87 Aligned_cols=27 Identities=11% Similarity=-0.244 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 402 NCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
-....++...|+.++|.+++.......
T Consensus 311 ~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 311 LAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344455678999999999998877554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-08 Score=98.48 Aligned_cols=257 Identities=16% Similarity=0.094 Sum_probs=168.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 142 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
.++-.+...|+.|+.+||..+|.-|+..|+.+.|- +|.-|.-..+..+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677788888999999999999999999988888 8888888777778888888888888888877765
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVL 300 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~ 300 (546)
.|...||+.|..+|...||+.- |+...+ -...++..+..+|.-.....++..+. ..+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq---------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ---------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH---------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5678889999999999988776 333222 12234455666666666666665533 2344455443
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHHHHHHHHhhhh
Q 009025 301 TSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDI 377 (546)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~ 377 (546)
.+......|.++.+++++..+.... ..|-.+ +++-+..... ++...+.+.... .++... +..+..+-..
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e-~~~s~~-l~a~l~~ala 216 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE-APTSET-LHAVLKRALA 216 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc-CCChHH-HHHHHHHHHh
Confidence 4444566778888888887765321 122222 3554444433 444444444444 343333 2333333334
Q ss_pred hcchHHHHHHHHHhcccCc---cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCcccc
Q 009025 378 EGDFKKEATELFNSISKDV---KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436 (546)
Q Consensus 378 ~g~~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 436 (546)
.| .++-|..++.+|.+.. ....+-.|+-+ .|+...+..+++-|++.|+.|+..|+
T Consensus 217 ag-~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 217 AG-DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred cC-chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 46 4588888888887653 22233344433 78888888889999999999997775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-08 Score=91.25 Aligned_cols=253 Identities=15% Similarity=0.109 Sum_probs=168.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
=.|++..++.-.+ ........+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 4688888887666 333322334556667888999999877654 3333333 5666666555544443344455555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
-+++....+... +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444443333332 3333333345677889999999988653 267777888999999999999999999998753
Q ss_pred CCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 257 NCQPDSWTFSSMITICS----CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
.| .+...|..++. ....+.+|..+|+++.+. +.++..+.+.+..++...|++++|.+++.+..+.+ .-|.
T Consensus 162 ---eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 162 ---ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp ---CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred ---Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 34 33444444443 344699999999998764 56788999999999999999999999999987643 2245
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHH
Q 009025 333 RFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~~~ 367 (546)
.+...++.+....|+ +.+.+++.++....|....+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 677778888888888 67888899988888876543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-05 Score=80.38 Aligned_cols=303 Identities=14% Similarity=0.012 Sum_probs=178.3
Q ss_pred CCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCC-ccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009025 82 PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKW-RIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159 (546)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 159 (546)
|+.+.+..... .++...|+.+.+...+....+... .++.. ........+...|++++|.+++++..+.. +.|...+
T Consensus 3 p~~~~a~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAA-LLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred CccHHHHHHHH-HHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 44455544433 344456777777777766654321 22322 22233445677899999999999988763 3344444
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 160 NNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 160 ~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
.. ...+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|++.+++..+... .+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 42 222222 3455555555544 1122333 34555667788999999999999999998753 35778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDS--WTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVL-T--SLIQCYG 308 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~ 308 (546)
.|...|++++|+.++++........++. ..|..+...+...|++++|..+|++...... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 9999999999999999988754212332 3456788899999999999999999864332 1122211 1 2333344
Q ss_pred hcCChhHHHHH--HHHhhhCCC--CCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC---hh----HHH--HHHHHh
Q 009025 309 KAQRTDDVVRA--LNRLPELGI--TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK---LG----YVV--KLLLEE 374 (546)
Q Consensus 309 ~~g~~~~A~~~--~~~m~~~~~--~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~---~~----~~~--~~L~~~ 374 (546)
..|..+.+.+. ......... ............++...|+ ++|..+++.+...... .. .+. -+....
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 44543333332 111111111 1111222356666777787 8888888877652221 11 111 222334
Q ss_pred hhhhcchHHHHHHHHHh
Q 009025 375 QDIEGDFKKEATELFNS 391 (546)
Q Consensus 375 ~~~~g~~~~~A~~~~~~ 391 (546)
+...|+ .++|.+.+..
T Consensus 317 ~~~~g~-~~~A~~~L~~ 332 (355)
T cd05804 317 AFAEGN-YATALELLGP 332 (355)
T ss_pred HHHcCC-HHHHHHHHHH
Confidence 455564 3777766654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-06 Score=83.40 Aligned_cols=322 Identities=16% Similarity=0.058 Sum_probs=199.4
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChh
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA-GNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
|....+.++|..-|.+.... |+..+..+...-... -...+-.++|+.+.-. -..-+......+.....-...-+
T Consensus 151 y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~ 226 (611)
T KOG1173|consen 151 YVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE 226 (611)
T ss_pred hhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc
Confidence 33555677888888777654 555555443332221 1112333333321100 01223333333333321111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.....-++-.-.|..-+........+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.
T Consensus 227 ~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV 305 (611)
T KOG1173|consen 227 ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV 305 (611)
T ss_pred cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 111111111222345566677777777888888888888888887763 4456667777778888888888777777887
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
+.. +-...+|-++.--|.-.|+..+|.+.|.+....+ |. ...|-.+...|+-.|..|.|+..+...-+.=..-..
T Consensus 306 ~~y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 306 DLY--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred HhC--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence 765 5667888888888888888888888888766532 33 457888888888888888888888776542111111
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--------Cc-cchhhH
Q 009025 333 RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--------DV-KKAYCN 402 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--------~~-~~~~~~ 402 (546)
. +-.+.--|.+.+. .-|.+.|.+...+.|....+.+-++......+ ...+|...|+.... .+ -.++++
T Consensus 382 P-~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 382 P-SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred h-HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 1 1223334555666 88888888888888888777777776655555 34777777766431 11 234678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 403 CLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.|..+|.+.+++++|+..+++.+...
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888888888887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-05 Score=74.44 Aligned_cols=148 Identities=12% Similarity=0.154 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~ 176 (546)
..+++..|..+|++.+.-.. .+...|-..+.+=.++..+..|..+++..... -|-+ ..|--.+.+=-..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 56777777777777776542 25566666666666666666666666655543 1221 12222333333345555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
++|++-.+ ..|+...|++.|+.=.+...++.|..+|++.+-. .|++.+|--....=.++|...-|..+|+..
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555444 2455555555555555555555555555554432 244444444444444444444444444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.7e-06 Score=77.46 Aligned_cols=300 Identities=10% Similarity=0.005 Sum_probs=182.3
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHh-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-H
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-T 158 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~ 158 (546)
.|+.++.+..+..-..+-.++...|...|-.+.. .-.+-|+.....+.+.+...|+.++|+..|++.... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 4444444443333333344555555555444433 234568888999999999999999999999998765 34332 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 238 (546)
.....-.+.+.|+.+....+...+.... .-+...|-.-........+++.|+.+-++.++.+.. +...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHh
Confidence 2222334567788888888877776542 112333333344445667888888888877765322 44555555567778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HhcCChhHH
Q 009025 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI-QCY-GKAQRTDDV 316 (546)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~-~~~g~~~~A 316 (546)
.|+.++|.-.|+...... +-+..+|.-|+..|...|++.+|..+-+..... +.-+..+.+.+. ..+ -...--++|
T Consensus 347 ~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 888888888888877654 467788888888888888888877766554432 122444444331 122 222334667
Q ss_pred HHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 317 VRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 317 ~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
.++++.-.+ +.|+.. ..+.+...|...|. ++++.+++......++.. ..+.|++.+.... ...+|.+.|..
T Consensus 424 Kkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~N-e~Q~am~~y~~ 496 (564)
T KOG1174|consen 424 KKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQN-EPQKAMEYYYK 496 (564)
T ss_pred HHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 776666554 455543 45556666666677 777777777666555432 2255555544444 34666666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-06 Score=90.97 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=186.2
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKP---NMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 109 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
|++..... +.....|-..|....+.++.++|.+++++++.. ++.- -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444332 335678999999999999999999999998754 2111 134677888877777888899999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---
Q 009025 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--- 261 (546)
Q Consensus 185 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--- 261 (546)
.. -.-.+|..|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++++..+. -|-
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eH 1599 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEH 1599 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhh
Confidence 52 23568899999999999999999999999876 2346788999999999999999999999998874 343
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH--HHHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD--RFCGCLL 339 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll 339 (546)
.....-.+..-.+.|+.+++..+|+..+....+ -...|+.+|+.=.++|+.+.+..+|++....++.|-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 333445566667899999999999999876433 5788999999999999999999999999998887765 4667777
Q ss_pred HHHhcCCHHHHHH
Q 009025 340 NVMTQTPKEELGK 352 (546)
Q Consensus 340 ~~~~~~g~~~a~~ 352 (546)
..=...|+++..+
T Consensus 1679 eyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHhcCchhhHH
Confidence 6666667644444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-06 Score=76.28 Aligned_cols=91 Identities=15% Similarity=0.027 Sum_probs=50.7
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH-HHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHH-HHHHhcCCH
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI-DLCVNLNLL 414 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~-~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 414 (546)
+..+....|. .+|.++|-.+..........+ ..|+++|..++ ..+-|++++-++....+..+.-.+| .-|.+.+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk-kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK-KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC-CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 4444455555 566666555444333333333 66667776666 4566777666665544443333333 456677776
Q ss_pred HHHHHHHHHHHhccc
Q 009025 415 ENACKLLELGLTLEV 429 (546)
Q Consensus 415 ~~A~~~~~~m~~~g~ 429 (546)
=-|-+.|+.+...+.
T Consensus 478 yyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 478 YYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHhhhHHHccCC
Confidence 667777776665553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-05 Score=75.24 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=135.5
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 168 (546)
.++.+..+ ..|+-++|....+...+..++ +.+.|..+.-.+-...++++|+..|+.....+ +-|..+|.-+.-.-++
T Consensus 45 AmkGL~L~-~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 45 AMKGLTLN-CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQ 121 (700)
T ss_pred Hhccchhh-cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 34444433 778999999999888876555 78889998888888899999999999998875 4566777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHH------HHHHhcCC
Q 009025 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLL------AMCADVGY 241 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~ 241 (546)
.++++........+.+.. +.....|..+..++.-.|+...|..++++..+.. -.|+...|.-.. ......|.
T Consensus 122 mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 778777777777776642 1244566677777777788888888877776543 234544444332 23345566
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTF-SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 302 (546)
.++|.+.+...... ..|...+ ..-...+.+.+++++|..++..++.++ ||..-|..
T Consensus 201 ~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~ 257 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYE 257 (700)
T ss_pred HHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHH
Confidence 66666666554332 2233332 234455667777777777777777653 55444433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-06 Score=85.61 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=154.5
Q ss_pred hhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 87 ASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166 (546)
Q Consensus 87 ~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 166 (546)
...+.....+.+.|++.+|.-.|+...+..+. +...|--|....+.+++-..|+..+++..+.. +-|....-.|.-.|
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSy 363 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSY 363 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 33344555555888888888888888877544 77788888888888888888888888888764 33566777777778
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCcCHHHHHHHHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSP--------NWNTYASLLRAYGRARYGEDTLSVYREMK-EKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p--------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~ 237 (546)
...|.-..|.+.++.-+....+- +...-.. ..+.....+.+..++|-++. ..+..+|......|.-.|-
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 88888888888887775542110 0000000 11111122334444554444 3343467777777777788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDV 316 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 316 (546)
-.|++++|...|+...... +-|...||-|...++...+.++|+..|++.++ ++|+ +.+...|.-+|...|.+++|
T Consensus 442 ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred cchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHH
Confidence 8888888888888887764 55777888888888888888888888888777 3455 33444566677788888888
Q ss_pred HHHHHHhh
Q 009025 317 VRALNRLP 324 (546)
Q Consensus 317 ~~~~~~m~ 324 (546)
.+.|-+.+
T Consensus 518 ~~hlL~AL 525 (579)
T KOG1125|consen 518 VKHLLEAL 525 (579)
T ss_pred HHHHHHHH
Confidence 87776654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-05 Score=74.44 Aligned_cols=183 Identities=7% Similarity=0.053 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
..++..+-..+...++.++|+.++.++++.. +-+..+|+.-..++...| ++++++..++++.+... .+..+|+...-
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHH
Confidence 3455566666667778888888888888753 223345666556666666 56777777777776543 24455665554
Q ss_pred HHHhcCCh--HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 009025 200 AYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-- 275 (546)
Q Consensus 200 ~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 275 (546)
.+.+.|+. ++++.+++++.+...+ +..+|+...-.+...|+++++++.++++++.+ .-|..+|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccc
Confidence 55555542 5566777777665433 66777777777777777777777777777665 45566666555544443
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 276 -GKV----SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 276 -g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
|.. ++..++..+++...+. |...|+.+...+..
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKD 229 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhc
Confidence 111 2344444444443322 44455555554444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-05 Score=86.58 Aligned_cols=301 Identities=13% Similarity=0.022 Sum_probs=173.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHH
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAIGV------KPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTY 194 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~ 194 (546)
....+...|++++|..+++...+.-- .+. ......+...+...|++++|...+++....-...+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34445567788888888877654210 111 112222334456778888888888887653111121 234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-CHH
Q 009025 195 ASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENC-QP-DSW 263 (546)
Q Consensus 195 ~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~-~~~ 263 (546)
+.+...+...|++++|...+++.... |.. ....++..+...+...|++++|...+++.... +.. .+ ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55566677788888888888777642 111 11234555666778888888888888775542 110 01 223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHH--H-
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEA--GFEP--NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDR--F- 334 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--t- 334 (546)
.+..+...+...|++++|...+++.... ...+ ....+..+...+...|++++|...+.+.... ....... .
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445566677778888888888876542 1112 1333444566677888888888888777532 1111110 0
Q ss_pred H-HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH----HHHHHHHhhhhhcchHHHHHHHHHhccc-------Cc-cchh
Q 009025 335 C-GCLLNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSISK-------DV-KKAY 400 (546)
Q Consensus 335 ~-~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~----~~~~L~~~~~~~g~~~~~A~~~~~~~~~-------~~-~~~~ 400 (546)
. ...+..+...|. +.+..++............ ....++..+...|+ .++|...++.... .. ...+
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ-FDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 011223334555 6777766554432211111 12455666666674 4777777766432 11 1235
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 401 CNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+..+..++.+.|+.++|...+.++.+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667778889999999999999887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0002 Score=73.47 Aligned_cols=341 Identities=15% Similarity=0.138 Sum_probs=191.1
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HH
Q 009025 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NT 193 (546)
Q Consensus 115 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~ 193 (546)
..+.-|...|..|.-+....|+++.+.+.|++....- --....|+.+...+...|.-..|..+++.-......|+. ..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455677888888888888888888888888876432 234556777777777777777777777665543322322 22
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHH--------------------------------------------------HHcCC
Q 009025 194 YASLLRAYG-RARYGEDTLSVYREM--------------------------------------------------KEKGM 222 (546)
Q Consensus 194 ~~~ll~~~~-~~g~~~~A~~~~~~m--------------------------------------------------~~~g~ 222 (546)
+-..-..|. +.+..++++.+-.+. .+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 222222222 224444444443333 33221
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------
Q 009025 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEP------ 295 (546)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p------ 295 (546)
. |....--+.--|+..++++.|.+..++..+.+. .-+...|..|.-.+...+++.+|+.+.+...+. |...
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 1 112222223334555667777777777666643 566666766666667777777777776655432 1100
Q ss_pred ------------CHHHHHHHHHHHH------h---c--------------CChhHHHHHHHHhh--------hCC-----
Q 009025 296 ------------NLFVLTSLIQCYG------K---A--------------QRTDDVVRALNRLP--------ELG----- 327 (546)
Q Consensus 296 ------------~~~~~~~li~~~~------~---~--------------g~~~~A~~~~~~m~--------~~~----- 327 (546)
-..|...++..+- . . ++..+|.+....+. ..|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0111111111111 0 0 00111111111000 000
Q ss_pred ----CC--CCH------HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh-cc
Q 009025 328 ----IT--PDD------RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS-IS 393 (546)
Q Consensus 328 ----~~--p~~------~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~-~~ 393 (546)
+. |+. ..|......+.+.+. +++...+.+..+..|-...++...|..+...| ..++|.+.|.. +.
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~-~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG-QLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH-hhHHHHHHHHHHHh
Confidence 01 111 123344445555555 77777777777777777777788888877777 44777776655 44
Q ss_pred cCcc-chhhHHHHHHHHhcCCHHHHHH--HHHHHHhcccccCccccCccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 394 KDVK-KAYCNCLIDLCVNLNLLENACK--LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 394 ~~~~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
.+|+ +....++..++.+.|+..-|.. ++..|.+.+ |. +...|-...+-+.. |.-..|.+.+...++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~----n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PL----NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CC----CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 4554 5688999999999999888877 888888887 65 44567655444443 777777777665544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-05 Score=73.41 Aligned_cols=207 Identities=10% Similarity=0.047 Sum_probs=152.2
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-- 172 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-- 172 (546)
+...++.++|+.+.+.+++.... +..+|+.--.++...| +++++++.++++.+.. +-+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 44678899999999999886433 5567777777777777 6799999999998775 34566788776666677763
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCH----HHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV---GYT----DEA 245 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~A 245 (546)
+++..+++++++... -|..+|+...-++.+.|+++++++.++++++.+.. +..+|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 677888889888653 47889998888999999999999999999988755 677888777666655 222 467
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCR----GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
+++..+++... +-|...|+-+...+... +...+|...+.+..+.++ .+......|++.|+.
T Consensus 203 l~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 77777777664 66788888888887763 334567777777665432 255666666766664
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.3e-08 Score=59.61 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 292 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
|+.||..+|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-08 Score=59.56 Aligned_cols=32 Identities=44% Similarity=0.740 Sum_probs=14.1
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 221 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-05 Score=86.37 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
+...|-..|......++.++|.+++++....=.+ .--...|.++++.-...|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4677888898999999999999999998753210 112346778888888888889999999999873 22346788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC--hhHHHHHHHHhhhhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK--LGYVVKLLLEEQDIE 378 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~--~~~~~~~L~~~~~~~ 378 (546)
.|...|.+.+.+++|.++|+.|.++ ..-....|...+..+.+..+ +.|..++....+.-|. ...++.-.+..-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999964 33566789999999999988 8888899999998888 344666667777788
Q ss_pred cchHHHHHHHHHhcccC-c-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 379 GDFKKEATELFNSISKD-V-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 379 g~~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
|+. +.++.+|+..-.. | -...|+.+|+.-.++|+.+-+..+|++.+..++.|.
T Consensus 1614 GDa-eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDA-ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCc-hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 855 9999999886532 2 355999999999999999999999999988875444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-06 Score=80.20 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=159.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009025 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208 (546)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 208 (546)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888886665 222211123345556778888889876543 4444433 566666665555554434555
Q ss_pred HHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 209 DTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
.++.-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555554443333222 22333333335566789999999988643 3567778889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC
Q 009025 288 MLEAGFEPNLFVLTSLIQCYG----KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~ 362 (546)
|.+.+ .| .+...+..++. ..+.+.+|+.+|+++.+. ..++..+.+.+..+....|+ ++|..++.+....+|
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 98742 34 33444444443 334799999999998764 56788899999999999999 999999999888888
Q ss_pred ChhHHHHHHHHhhhhhcchHHHHHHHHHhccc
Q 009025 363 KLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394 (546)
Q Consensus 363 ~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~ 394 (546)
....++..++.+....|+..+.+.+++..+..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88877755555555555443567777777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-05 Score=68.64 Aligned_cols=314 Identities=14% Similarity=0.067 Sum_probs=204.6
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL-LDTMGRAKRPWQV 175 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a 175 (546)
.+..++++|++++..-.+...+ +......|..+|....++..|-+.|+++-.. .|...-|... ...+.+.+.+..|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHH
Confidence 4677899999998887776432 7788889999999999999999999998765 4665555432 3557788899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
+++...|... ++...-..-+.+. ...+++..+..++++....| +..+.+.......+.|++++|.+-|+...
T Consensus 98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHH
Confidence 9999888653 2332222223332 34578888888888876443 55556666666678999999999999998
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH--------HHHHHHH-------
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-------------PNLF--------VLTSLIQ------- 305 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~--------~~~~li~------- 305 (546)
+-+. --....|+..+.- .+.|+.+.|++...+++++|++ ||+. .-..++.
T Consensus 172 qvsG-yqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 172 QVSG-YQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred hhcC-CCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 8775 3345567766544 4678999999999999987753 2211 1233333
Q ss_pred HHHhcCChhHHHHHHHHhh-hCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHH
Q 009025 306 CYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~ 384 (546)
.+.+.|+++.|.+.+-.|. +..-..|++|...+.-.-......+...-+.-+...+|-....+..|.-.||+.. ..+-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe-yf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE-YFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH-HHhH
Confidence 4567899999999999886 3334567777766543333322222233334445557766666655556677766 6677
Q ss_pred HHHHHHhcccC----ccchhhHHHHHHHHh-cCCHHHHHHHHHH
Q 009025 385 ATELFNSISKD----VKKAYCNCLIDLCVN-LNLLENACKLLEL 423 (546)
Q Consensus 385 A~~~~~~~~~~----~~~~~~~~li~~~~~-~g~~~~A~~~~~~ 423 (546)
|-+++.+-..- -+...| -|++++.- .-..++|++-++.
T Consensus 329 AADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 329 AADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHH
Confidence 77776654321 011223 34455443 3455666554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00054 Score=68.90 Aligned_cols=169 Identities=9% Similarity=0.104 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------CC
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS---VTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----------CQ 259 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~ 259 (546)
.|..+.+.|-..|+++.|..+|++..+-..+-- ..+|..-..+=.+..+++.|++++++...... -+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455666677777777777777777665433211 23444444444556667777777666543221 00
Q ss_pred C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-
Q 009025 260 P------DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD- 332 (546)
Q Consensus 260 ~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 332 (546)
+ +...|...++.--..|-++....+++++++..+. +.........-+-.+..+++++++|++-+..=--|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 0 1223444455555566677777777777664432 2222111222233455566677766665543223443
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 009025 333 RFCGCLLNVMT----QTPKEELGKLVECVEKSNS 362 (546)
Q Consensus 333 ~t~~~ll~~~~----~~g~~~a~~~~~~~~~~~~ 362 (546)
..|+..+.-+. ....+.|..+|++..+.-|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 23443333332 2222777777777777555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-06 Score=82.83 Aligned_cols=213 Identities=13% Similarity=0.075 Sum_probs=173.3
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+...|-...|+.+|++.. .|.-+|.+|...|+..+|..+..+..+. +||...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 44455568999999999998764 5677888999999999999998888874 789999999999888777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
-+++|.++.+..-.. +-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.+++..|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 788888888765432 22223333345789999999999877654 2356788888888899999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
...... +-+...||++-.+|.+.|+-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.+
T Consensus 544 rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 998764 5677899999999999999999999999999877 34666777777888999999999999999875
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-05 Score=72.82 Aligned_cols=184 Identities=13% Similarity=0.030 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-HHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN-WNT 193 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~ 193 (546)
....+..+...+.+.|++++|...|+++.... |+ ..++..+..++.+.|++++|...++++.+.... +. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34444555555555566666666555554432 22 124444555555556666666666655543211 01 012
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009025 194 YASLLRAYGRA--------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265 (546)
Q Consensus 194 ~~~ll~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 265 (546)
+..+..++.+. |+.++|.+.|+.+.+.... +...+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~---------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL---------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH---------HHHH
Confidence 33333333332 4556666666666554211 1222211111000 000 00 0001
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+...|.+.|++++|...|++..+... .| ....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344456666666666666666665422 12 345566666666666666666666666554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8e-06 Score=80.75 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=104.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
.+.|++.+|.-.|+..+..... +...|--|......+++-..|+..+++..+.+ +-|......|.-.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHHH
Confidence 4556666666666666555322 45666666666666666666666666666654 44556666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHhh-hCCCCCCHHHHHHHHHHHhcCCH-H
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLI-----------QCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPK-E 348 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~-~ 348 (546)
.++++.-+...+. |..+. ..+.....+.+..++|-++. ..+..+|..+...|.-.|--.|. +
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 6666655442211 00000 01111122233334444443 23323444444444444444455 5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 349 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+|...|+.++..+|....+++-||..++... .-++|+..+++. ...|. +.++-.|.-.|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 5555555555555555555555555544433 334454444432 22332 223444455555555555555444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00024 Score=70.74 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=41.5
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 146 (546)
.+..+..+...|++++|++....+...+ +-+...+..-+.++.+.++|++|+.+.+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk 71 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK 71 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh
Confidence 3455566668889999999998888765 34666777777777888888888755443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00018 Score=81.12 Aligned_cols=330 Identities=12% Similarity=-0.016 Sum_probs=194.9
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.+...|++.+|.......... ..-..............|+++.+..+++.+.......+..........+...|++++
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344666766666544333211 000011112223344567777777776665221111122223344555677899999
Q ss_pred HHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCH
Q 009025 175 VKTIYKEMTDNGL------SPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYT 242 (546)
Q Consensus 175 a~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~ 242 (546)
+..++......-- .+. ......+...+...|++++|...+++..+.-...+ ....+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9999988754310 111 12222333456788999999999998776311112 13456666778889999
Q ss_pred HHHHHHHHHHHhCCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcC
Q 009025 243 DEAFEIFEDMKSSENC--QP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFE--P-NLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g 311 (546)
++|...+++......- .+ ...++..+...+...|++++|...+++..+. +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 9999999887643110 11 2235566777888999999999999887642 221 1 2234455666777889
Q ss_pred ChhHHHHHHHHhhhC--CCCCC--HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCh----hH--HH-HHHHHhhhhhc
Q 009025 312 RTDDVVRALNRLPEL--GITPD--DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL----GY--VV-KLLLEEQDIEG 379 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~--~~~p~--~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~----~~--~~-~~L~~~~~~~g 379 (546)
++++|...+.+.... ...+. ...+..+.......|+ ++|...++......... .. .. ......+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999999887642 11222 2334445566677888 88888887775432111 11 11 11122233345
Q ss_pred chHHHHHHHHHhcccCc--cch----hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 380 DFKKEATELFNSISKDV--KKA----YCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 380 ~~~~~A~~~~~~~~~~~--~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
..++|...+....... ... .+..+..++...|+.++|..++++....
T Consensus 668 -~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 668 -DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred -CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4588888876654321 111 1456777889999999999999998754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00034 Score=74.40 Aligned_cols=216 Identities=8% Similarity=0.021 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...+-.|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|...+++....... +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 45555555555555555555555555555542 333444455555555555555555555555554322 344445555
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC-CChhHHHHHHHHhhhhhcch
Q 009025 305 QCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSN-SKLGYVVKLLLEEQDIEGDF 381 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~-~~~~~~~~~L~~~~~~~g~~ 381 (546)
.++.+.|++++|..+|+++... .|+ ..++..+..++...|+ ++|...|+...+.. +....+-+.+++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------- 231 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVD-------- 231 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHH--------
Confidence 5555555566666555555542 222 3455555555555555 55555555554422 222111233322
Q ss_pred HHHHHHHHHhcccCc-----c--chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccchhhHH
Q 009025 382 KKEATELFNSISKDV-----K--KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454 (546)
Q Consensus 382 ~~~A~~~~~~~~~~~-----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~g~~~ 454 (546)
+..-..+++.+..+. + ..+...+|.-|.+... .+++-.|.-+. +.--.++..+..|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~rIl~vi~sl~~GGAE 297 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRN-----------AEYDAGPESFV---GPVLMINGSLGAGGAE 297 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCc-----------ccccCCCCCCc---ceEEEEeCCCCCCcHH
Confidence 123333444443221 1 1233333333332221 12233344322 0122356677789999
Q ss_pred HHHHHHHHHHHHH
Q 009025 455 TALHIWINDLSKA 467 (546)
Q Consensus 455 ~a~~~~~~~~~~~ 467 (546)
..+..+...+.+.
T Consensus 298 r~~~~La~~l~~~ 310 (694)
T PRK15179 298 RQFVNTAVALQSA 310 (694)
T ss_pred HHHHHHHHHHHhc
Confidence 9887777777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-05 Score=71.70 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
|... ..+-..+...|+-+....+........ .-|....+..+....+.|++..|...+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 666677777788888777776654332 3455666778888888999999999988887753 568888998888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+|.+.|+++.|..-|.+..+.-.. +...+|.|.-.|.-.|+.+.|..++......+ .-|...-..|.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChH
Confidence 999999999999888888776332 56677888888888899999999998888765 557788888888888899999
Q ss_pred HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLE 290 (546)
Q Consensus 280 ~A~~~~~~m~~ 290 (546)
+|.++...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99888776554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-05 Score=71.79 Aligned_cols=187 Identities=9% Similarity=-0.027 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--H
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--T 227 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 227 (546)
.....+..+...+...|++++|...|+++.... |+ ..++..+..+|.+.|++++|+..++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345677778888888999999999999887753 32 246677788888999999999999998876432111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009025 228 LYNTLLAMCADV--------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299 (546)
Q Consensus 228 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 299 (546)
++..+..++... |++++|.+.|+.+.... +-+...+..+..... ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 455555555544 67888888888887753 223233322221111 000 000 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCC-CC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELGI-TP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~ 362 (546)
...+...|.+.|++++|+..|++..+... .| ....+..+..++.+.|+ ++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22456778999999999999999986421 23 34678899999999999 999999998877655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00032 Score=69.17 Aligned_cols=323 Identities=15% Similarity=0.065 Sum_probs=206.2
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 175 (546)
...|+++.|+..|.+.+..... |.+.|..=..+|+..|++++|++=-.+-.+. .|+ ..-|.-...++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 3788999999999988876544 8888888888999999998887765555554 565 34788888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------------------------------------------Ch
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRAR------------------------------------------------YG 207 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------------------------------------------------~~ 207 (546)
+.-|.+=++.. +.|...++-+.+++.... +.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88888776642 224455555555441110 00
Q ss_pred HHHHHHHHHHHHc--------C-------CCc------------C----------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 208 EDTLSVYREMKEK--------G-------MQL------------S----------VTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 208 ~~A~~~~~~m~~~--------g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
+...+....+... | ..| | ..-.-.+.++..+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0001111000000 0 001 0 0123456667777778888888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCChhHHHHHHHHh
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS-------LIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~A~~~~~~m 323 (546)
..... .-+..-++....+|...|.+.+....-+...+.|.. ...-|+. +..+|.+.++++.|+..|.+.
T Consensus 249 ~a~el---~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 249 KALEL---ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHhH---hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 87764 334445566677788888888777776666665432 2222332 333566677788888888776
Q ss_pred hhCCCCCCHHH-------------------------HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh
Q 009025 324 PELGITPDDRF-------------------------CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 377 (546)
Q Consensus 324 ~~~~~~p~~~t-------------------------~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~ 377 (546)
......||... ...=.+.+.+.|+ ..|++.|.++++.+|+....+...+.+|.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 64433443321 1122445566677 888899999999999998888888888888
Q ss_pred hcchHHHHHHHHHh-cccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 378 EGDFKKEATELFNS-ISKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 378 ~g~~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.|+. ..|+.-.+. +..+|+ ...|.--..++.-..+++.|++.|++.++.+
T Consensus 405 L~~~-~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 405 LGEY-PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhhH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8844 555544333 333443 2355555666667778889999998887776
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00015 Score=74.61 Aligned_cols=289 Identities=12% Similarity=0.120 Sum_probs=181.2
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C--------CCCCHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-G--------VKPNMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~~~~~ 161 (546)
...++|.--|++|.|.+-.+.+. +..+|..|.++|.+..+++-|.-.+-.|... | -.++ .+=.-
T Consensus 733 l~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eak 805 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAK 805 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhH
Confidence 55678888999999999888775 6678999999999999998888777777532 1 1222 22222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
+.......|.+++|+.+|.+-.. |..|=..|...|.+++|.++-+.--+.. =..||.....-+...++
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhcc
Confidence 33334577889999999988765 3455677888899999998876532222 23567777777778888
Q ss_pred HHHHHHHHHHHH----------hCCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009025 242 TDEAFEIFEDMK----------SSEN--------CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303 (546)
Q Consensus 242 ~~~A~~~~~~m~----------~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 303 (546)
.+.|+++|++.. .... -..|...|.--...+-..|+++.|+.+|...++ |-.+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 999988887632 1110 011222233333344456777777777766554 4556
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc--------CCChh-HHHHHHHH
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS--------NSKLG-YVVKLLLE 373 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~--------~~~~~-~~~~~L~~ 373 (546)
+...|-.|+.++|-++-++- -|......|.+.|-..|+ .+|.+.|...... ..+.. ..+++
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl--- 1015 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL--- 1015 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---
Confidence 66667778888887766543 255667778888888888 8888777654321 11111 11111
Q ss_pred hhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHH
Q 009025 374 EQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 421 (546)
Q Consensus 374 ~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 421 (546)
+....|...-.|-.+|++... ....-+..|.+.|.+.+|+++-
T Consensus 1016 al~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHH
Confidence 111223233455556665542 1233445677888887776643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00053 Score=61.74 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=161.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VK 176 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~ 176 (546)
-.|.+..++..-...... +-++..-.-+-++|...|.+..... +.+... .|.......+......-++.+. ..
T Consensus 20 Y~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 456666655544433322 2344455556667777776554332 222222 3333343333333333333333 34
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
++.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-- 165 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ-- 165 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 455666555444454555555667889999999998887622 233333334556778889999999999987
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 257 NCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
-.+..|.+-|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+-...++...|++++|..++++...+. .-++
T Consensus 166 --ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 166 --IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred --cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 3456677766666654 45788999999999863 45888889999999999999999999999998764 3356
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHH
Q 009025 333 RFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~~~ 367 (546)
.|...++.+-...|. +-..+.+.++....|....+
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 677777776667777 44556777777777766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-05 Score=66.69 Aligned_cols=117 Identities=9% Similarity=0.068 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGK--VSEA 281 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 281 (546)
++.+++...++...+.+. .|...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 334444444444444322 244555555555555555555555555555443 3344444444443 234444 2555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544322 344445555555555555555555555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0018 Score=60.34 Aligned_cols=297 Identities=11% Similarity=0.056 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA- 195 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~- 195 (546)
++.-..-+.+.+...|++.+|+.-|....+- |+..|.++. ..|...|+...|+.=+.+.++ ++||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence 4445556677777778888888877777653 333444433 356667777777777777776 356643221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcC--H------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLS--V------------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 261 (546)
--...+.+.|.+++|..-|+..++....-. . ......+..+...|+...|+.+...+.+.. +.|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wd 188 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWD 188 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cch
Confidence 122445677888888888887776532110 0 112233455566788888888888888764 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 341 (546)
...|..-..+|...|++..|+.=++..-+..- -+..++-.+-..+...|+.+.++...++.++ +.||...+-..-.-
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHH
Confidence 77788888888888888888777666554322 3566666677777888888888888887776 45776432222222
Q ss_pred HhcC-------------CH-HHHHHHHHHHHHcCCChhH----HHHHHHHhhhhhcchHHHHHHHHHhc-ccCcc-chhh
Q 009025 342 MTQT-------------PK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYC 401 (546)
Q Consensus 342 ~~~~-------------g~-~~a~~~~~~~~~~~~~~~~----~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~-~~~~ 401 (546)
+.+. +. .++..-.+.+.+.+|.... ....+..++...| .+-+|+....++ ..+|+ +.++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~-~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE-QFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC-CHHHHHHHHHHHHhcCchHHHHH
Confidence 2111 11 2333334445556665322 2356666666666 446676665554 33343 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 402 NCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.--.++|.-...++.|+.=|+.+.+.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 666777777777888888777776544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-05 Score=79.21 Aligned_cols=216 Identities=12% Similarity=0.050 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.-..+...+...|-...|+.+|++.. .|.-+|.+|...|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34467778888899999999998765 4667888999999999999998888873 688999999999888
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 282 (546)
..--+++|.++++....+ +-..+..-..+.+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.+++..|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHH
Confidence 888888898888765432 11122222234789999999999888766 567789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 009025 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 360 (546)
Q Consensus 283 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~ 360 (546)
+.|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|-..+....+.|. ++|.+.+..+...
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999998874322 46789999999999999999999999999876 4455566777777788888 9999988887653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00024 Score=75.57 Aligned_cols=183 Identities=14% Similarity=0.071 Sum_probs=140.2
Q ss_pred HHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 009025 131 YGTAGNFDGCLNVYEEMKA--IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYG 207 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 207 (546)
..+++....+.+-+-++.. +....+...+..|.....+.|.+++|+.+++...+. .| +......+...+.+.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 59 LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccH
Confidence 3444444444333333322 123556889999999999999999999999999985 45 456777888999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
++|+..+++....... +......+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++
T Consensus 137 eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 137 EAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987543 67788888999999999999999999999843 45688999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+.. .+....|+.++ ++...-..+++++.-
T Consensus 214 a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~ 244 (694)
T PRK15179 214 GLDAI-GDGARKLTRRL------VDLNADLAALRRLGV 244 (694)
T ss_pred HHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCc
Confidence 88642 24455565544 334455566776653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-05 Score=65.40 Aligned_cols=92 Identities=8% Similarity=-0.101 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++....+. .+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 34444445555555555555544443 33444455555555555555555555555554322 1344444444555555
Q ss_pred CChhHHHHHHHHhhh
Q 009025 311 QRTDDVVRALNRLPE 325 (546)
Q Consensus 311 g~~~~A~~~~~~m~~ 325 (546)
|+.++|+..|++..+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00011 Score=65.99 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=118.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
..+-..+...|+-+....+....... ...|....+.++....+.|++..|+..|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555666777777777766664432 23356666678888888888888888888877654 45888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
|++++|..-|.+..+.. .-+...++.|.-.|.-.|+++.|..++......+.. |...-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888888887764 446667788888888888888888888887765443 556666677777888888888877
Q ss_pred HHHhh
Q 009025 320 LNRLP 324 (546)
Q Consensus 320 ~~~m~ 324 (546)
-..-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00028 Score=64.32 Aligned_cols=264 Identities=15% Similarity=0.107 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ------------- 223 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~------------- 223 (546)
+.+...-...+.|+++.|.+-|+...+- |.. ....||..+-.| +.|+++.|++...+++++|++
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 3333444456788999999999888775 454 466787766554 678899999999999888753
Q ss_pred cCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 224 LSV---------------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 224 ~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
||+ ..+|.-...+.+.|+++.|.+-+-+|.-+.....|.+|...+.-+- -.+++.+..+-+.-+
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL 302 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH
Confidence 222 1233334455678899999999888875544466778776654332 234455555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChh
Q 009025 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLG 365 (546)
Q Consensus 289 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~ 365 (546)
.+.+. -...||..++-.||++.-++-|-.++.+=...-.+ .+...|+ ++.++.-... +++.+-++.+.+.-- +
T Consensus 303 L~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~--~ 378 (459)
T KOG4340|consen 303 LQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLT--E 378 (459)
T ss_pred HhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHH--H
Confidence 55443 34578888888999999999988887654322111 1223333 5555554443 666665544432100 0
Q ss_pred HHHHHHHHhhhhh-cchHHHHHHHHHhcccC--ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 366 YVVKLLLEEQDIE-GDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 366 ~~~~~L~~~~~~~-g~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..-..-+....+. .+.-.+.+..++..... .-.++.-+-...|++..++..+.++|+.-.+..
T Consensus 379 kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 379 KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 0000001110000 00001111222221110 011234455567889999999999999766554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.1e-05 Score=63.43 Aligned_cols=108 Identities=6% Similarity=-0.106 Sum_probs=76.6
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 009025 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 107 ~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 186 (546)
.+|++..+. ++..+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++.....
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456666554 33345556677777788888888888777664 3466677777777888888888888888877753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 187 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
+.+...+..+..++.+.|+.++|+..|+...+.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 236677777777777788888888888777765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0028 Score=65.34 Aligned_cols=323 Identities=15% Similarity=0.063 Sum_probs=201.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-cCCh---
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGR-AKRP--- 172 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~~--- 172 (546)
++|+++.+-+.|++....- --....|+.+-..|...|.-..|+.+++.-....-.|+ ...+-..-..|.+ .+..
T Consensus 335 ~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 7888888888888876432 22555677777777777776777777766543321232 2222211122211 1222
Q ss_pred -----------------------------------------------hHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc
Q 009025 173 -----------------------------------------------WQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRA 204 (546)
Q Consensus 173 -----------------------------------------------~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~ 204 (546)
.++++.+++..+.+. .|++.-| +---|+..
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~ 491 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQ 491 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHH
Confidence 234444555554332 2333222 33346667
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
++.+.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- ..|......-+..-...++.+++...
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHHHHHH
Confidence 8899999999999988666689999999999999999999999998876542 11111111111111112222222111
Q ss_pred HHHH---------------------------------------------------HHcCC-----------CCC------
Q 009025 285 FNEM---------------------------------------------------LEAGF-----------EPN------ 296 (546)
Q Consensus 285 ~~~m---------------------------------------------------~~~~~-----------~p~------ 296 (546)
...+ ...|. .|+
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 1111 00110 111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
...|......+.+.+..++|...+.+... +.| ....|......+-..|. ++|...|......+|+.......++.+
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 12345566677888888888877777765 333 33455555556666777 999999999999999999999999999
Q ss_pred hhhhcchHHHHHH--HHHhc-ccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 375 QDIEGDFKKEATE--LFNSI-SKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 375 ~~~~g~~~~~A~~--~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+.+.|+. .-|.. ++..+ ..+| +...|-.|...+.+.|+.++|.+.|+-..+..
T Consensus 728 lle~G~~-~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 728 LLELGSP-RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHhCCc-chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9998853 44444 55554 4455 56699999999999999999999999887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-05 Score=68.27 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=66.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--hHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARY--GEDT 210 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~--~~~A 210 (546)
.++.++++..++...+.. +.|...|..+...+...|+++.|...|++..+... .+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555443 34555666666666666666666666666655432 244555555554 244454 3566
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 211 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666655433 45555556666666666666666666665544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00087 Score=59.96 Aligned_cols=189 Identities=19% Similarity=0.173 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHHHH---CC-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 009025 170 KRPWQVKTIYKEMTD---NG-LSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 170 g~~~~a~~~~~~m~~---~g-~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 244 (546)
.+.++..+++.+++. .| ..++. ..|..++-+...+|+.+.|..+++.+.++- +-+...--.-.--+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345666666666653 23 34443 345555666677788888888888877652 2222222222223445788888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
|+++++.+.+.+ +.|.+++..-+...-..|+--+|++-+.+..+. +.-|...|.-+.+.|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888888776 677778877777777777777888777777764 44588888888888888888888888888887
Q ss_pred hCCCCCCH-HHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCh
Q 009025 325 ELGITPDD-RFCGCLLNVMTQTPK----EELGKLVECVEKSNSKL 364 (546)
Q Consensus 325 ~~~~~p~~-~t~~~ll~~~~~~g~----~~a~~~~~~~~~~~~~~ 364 (546)
- +.|.. ..+..+...+.-.|. +-+.++|....+.++..
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 5 34543 344455555443332 67777888888877733
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-05 Score=74.33 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=49.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 176 (546)
+.|++++|+..++.+...- +-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 4444555555554444431 123334444444445555555555555554443 233 333334444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 211 (546)
.+++...... +-|...|..|..+|...|+..+|.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 4444444432 224444555555555444444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0027 Score=59.31 Aligned_cols=290 Identities=11% Similarity=0.059 Sum_probs=194.2
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTL---IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY-NNLLDTMG 167 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~ 167 (546)
....+...|++.+|+.-|....+- |+..|.++ ...|...|+-..|+.=|...++. +||-..- -.-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 334444778899999988888764 55555554 45677888888888888887775 6775432 22334577
Q ss_pred hcCChhHHHHHHHHHHHCCCCC--CHHH------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSP--NWNT------------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p--~~~~------------~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
+.|.+++|..=|+.+++....- .... ....+..+...|+...|+.+...+.+.. +.|...|..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 8899999999999988763211 1111 1223445566789999999999888864 45888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH------
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV----LTSL------ 303 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l------ 303 (546)
.+|...|++..|+.=++..-+.. ..++.++--+-..+...|+.+.++..+++.++. .||-.. |-.|
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 99999999999988888877654 566777777788888899999998888888773 354322 2111
Q ss_pred ---HHHHHhcCChhHHHHHHHHhhhCCCCCCHH---HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 304 ---IQCYGKAQRTDDVVRALNRLPELGITPDDR---FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 304 ---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
+......++|-++++..+...+....-..+ .+..+-.++...++ .+|++...++....|+...++.--+.+|.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 122345577777777777766543221122 34444445555566 88888888888888887666544445554
Q ss_pred hhcchHHHHHHHHHhcc
Q 009025 377 IEGDFKKEATELFNSIS 393 (546)
Q Consensus 377 ~~g~~~~~A~~~~~~~~ 393 (546)
... ..+.|+.-|+...
T Consensus 353 ~dE-~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 353 GDE-MYDDAIHDYEKAL 368 (504)
T ss_pred hhH-HHHHHHHHHHHHH
Confidence 444 4467766666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00028 Score=75.86 Aligned_cols=214 Identities=12% Similarity=0.077 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHH------------------HH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRPWQVKTI------------------YK 180 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~------------------~~ 180 (546)
+...+..|+..|...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 4456667777777777777777777765554 34432 222222344444444443332 22
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009025 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260 (546)
Q Consensus 181 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 260 (546)
.|...+ -+...+..+..+|-+.|+.++|..+|+++.+... -|..+.|.+...|... ++++|++++.+......
T Consensus 108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--- 180 (906)
T PRK14720 108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--- 180 (906)
T ss_pred HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH---
Confidence 222221 1234556666677777777777777777776653 3666777777777776 77777777766654211
Q ss_pred CHHHHHHHHHHH---H--hcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009025 261 DSWTFSSMITIC---S--CRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334 (546)
Q Consensus 261 ~~~~~~~li~~~---~--~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 334 (546)
+..-|+.+...+ + ..-+++.-..+.+.+... |+..-..++-.+-..|-..+++++++.+|+.+.+..-. |...
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKA 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhh
Confidence 111111111110 0 111222333333333322 33333445555556666667777777777777664322 3344
Q ss_pred HHHHHHHHh
Q 009025 335 CGCLLNVMT 343 (546)
Q Consensus 335 ~~~ll~~~~ 343 (546)
..-++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 444555444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00072 Score=66.15 Aligned_cols=137 Identities=14% Similarity=0.038 Sum_probs=77.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 244 (546)
+...|+++.|+..++.++.. .+-|..-.....+.+.+.++..+|.+.++++... .|+ ...+-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34455666666666665554 2223444444555666666666666666666654 233 4445555566666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
|+.+++...... +-|...|..|..+|...|+..++..-..+ +|...|+++.|+..+....
T Consensus 393 ai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 666666665554 45566666666666666666555544433 2344566666666665555
Q ss_pred h
Q 009025 325 E 325 (546)
Q Consensus 325 ~ 325 (546)
+
T Consensus 453 ~ 453 (484)
T COG4783 453 Q 453 (484)
T ss_pred H
Confidence 4
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00079 Score=71.00 Aligned_cols=285 Identities=14% Similarity=0.068 Sum_probs=168.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..+-+++|..+|+..- .+..+.+.||.- -+..++|.+.-++.. ....|..+..+-.+.|...+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 5677888988887653 355555555543 366777777665543 34578888888888888888876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
-|-+. .|...|.-+++...+.|.+++-.+++....++.-.|.+. +.||-+|++.++..+.++++.
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~------- 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA------- 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------
Confidence 65332 366788888888888888888888888777766555444 578888888888877666542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--------------------GFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
-||......+.+-|...|.++.|.-+|...-.. .-.-+..+|..+-.+|...+.+.-|.
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH
Confidence 466666666666666666666666655422110 00113334444444444433332221
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-chHHHHHHHHH-hccc
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELFN-SISK 394 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~~A~~~~~-~~~~ 394 (546)
|-..++.....-..-++.-|...|. ++...+++...........+++-|+..|++-. +..-+-+++|- ++..
T Consensus 1270 -----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNi 1344 (1666)
T KOG0985|consen 1270 -----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNI 1344 (1666)
T ss_pred -----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcch
Confidence 2222223333345556666666666 66666666655544444456666766666653 11122223332 1111
Q ss_pred C------ccchhhHHHHHHHHhcCCHHHH
Q 009025 395 D------VKKAYCNCLIDLCVNLNLLENA 417 (546)
Q Consensus 395 ~------~~~~~~~~li~~~~~~g~~~~A 417 (546)
+ .....|+-|+-.|.+-..+|.|
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 0 1233677777777777666665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0099 Score=60.27 Aligned_cols=320 Identities=13% Similarity=0.112 Sum_probs=198.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
...++++|++.|..+...+. -|...|.-+.-.-++.|+++...+.-..+.+.. +-....|..+..+..-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999988653 377788877777778888888888777777653 3345678888888888899999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 009025 178 IYKEMTDNG-LSPNWNTYASLLR------AYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 178 ~~~~m~~~g-~~p~~~~~~~ll~------~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 249 (546)
++++..+.. -.|+...|.-... ...+.|..++|.+.+..-... + .|.. .-.+-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999888764 2456655544332 335667777777776654332 1 1322 2334456678888999999999
Q ss_pred HHHHhCCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHH----------------------------------HHcCC
Q 009025 250 EDMKSSENCQPDSWTFS-SMITICSCRGKVSEAE-AMFNEM----------------------------------LEAGF 293 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m----------------------------------~~~~~ 293 (546)
..+.... ||..-|. .+..++.+-.+.-++. .+|... .+.|+
T Consensus 243 ~~Ll~rn---Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 243 RRLLERN---PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHhhC---chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9888763 5555444 4444443332322222 333333 23333
Q ss_pred CCCHHHHHHHHHHHHhcCChh---H-HHHHHHHhhhCCC----------CCCH--HHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 294 EPNLFVLTSLIQCYGKAQRTD---D-VVRALNRLPELGI----------TPDD--RFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 294 ~p~~~~~~~li~~~~~~g~~~---~-A~~~~~~m~~~~~----------~p~~--~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
.+- +..+...|-.-...+ + +..+...+...|. .|.. .|+..+...+-+.|+ +.|..+++.
T Consensus 320 p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 221 122222221111111 1 1111111111111 2333 345667777788888 899999999
Q ss_pred HHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccC--ccchhhH-HHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009025 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD--VKKAYCN-CLIDLCVNLNLLENACKLLELGLTLEV 429 (546)
Q Consensus 357 ~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~ 429 (546)
.....|.....+-.-++++...| .+++|..++++...- +|+ ..| --+.-..+.++.++|.++..+..+.|.
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G-~l~eAa~~l~ea~elD~aDR-~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAG-LLDEAAAWLDEAQELDTADR-AINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccchhH-HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 88888888877766677777777 458888888876542 232 223 333445678888999888888777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0083 Score=60.18 Aligned_cols=317 Identities=15% Similarity=0.133 Sum_probs=173.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----------------------
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP----------------------- 154 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------------- 154 (546)
|.+..|+|+..++-..+ .+..+...-...+.+.|++++|+++|+.+.+.+..-
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 56666666666662221 233455555667778888888888888886543210
Q ss_pred ----CHHHHHHHHH---HHHhcCChhHHHHHHHHHHHCCC-------CCCH------H-HHHHHHHHHHhcCChHHHHHH
Q 009025 155 ----NMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGL-------SPNW------N-TYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 155 ----~~~~~~~ll~---~~~~~g~~~~a~~~~~~m~~~g~-------~p~~------~-~~~~ll~~~~~~g~~~~A~~~ 213 (546)
...+|..+.+ .+...|++.+|+++++...+.|. .-+. . .---|.-.+...|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 0113433333 35567889999998888732210 0000 0 112233455678899999998
Q ss_pred HHHHHHcCCCcCH----HHHHHHHHHHHhcCCHH------------------------------------------HHHH
Q 009025 214 YREMKEKGMQLSV----TLYNTLLAMCADVGYTD------------------------------------------EAFE 247 (546)
Q Consensus 214 ~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~------------------------------------------~A~~ 247 (546)
+...+..... |. +.-|.|+..-....-++ ...+
T Consensus 247 y~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8888776432 32 11222211110000000 0001
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH----
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSC-R-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN---- 321 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~-~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---- 321 (546)
+.+.........|. ..+..++..+.+ . .....+.+++...-+....-...+--.++......|+++.|++++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 11111111111333 334444443322 2 2467777777777665444345666777778888899999999888
Q ss_pred ----HhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH-------cCCChhHHHHHHHHhhhhhcchHHHHHHHH
Q 009025 322 ----RLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-------SNSKLGYVVKLLLEEQDIEGDFKKEATELF 389 (546)
Q Consensus 322 ----~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~-------~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~ 389 (546)
.+.+.+-.|- +...++..+.+.+. +-|..++.+..+ ..+.....+..++..-.+.| ..++|..++
T Consensus 405 ~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G-~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG-NEEEASSLL 481 (652)
T ss_pred hhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC-chHHHHHHH
Confidence 6666554554 44455555555555 445555444433 22333334444444444556 458888888
Q ss_pred Hhccc--CccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 390 NSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 390 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+++.. .++..+...++.+|++. +.+.|..+-+.+
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 88764 45666788888888876 466776665543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0091 Score=59.26 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVEC 356 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~a~~~~~~ 356 (546)
.+....++++++..-..--..+|-.+++.-.+..-.+.|..+|.+..+.+..+ +..++++++.-++......|.++|+.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 34444455555432211123456677777778888999999999999888777 66788999998888777999999999
Q ss_pred HHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccC---c--cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD---V--KKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 357 ~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
-.+.-++...++......+...++. ..|..+|++.... + ...+|..+|+--..-|+...+.++-+++.
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd-~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDD-NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcc-hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8887777777666666655555644 7889999887543 2 24599999999999999999988888764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0001 Score=61.87 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|..+|++..+.+. .+...+..+...|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 3334444444455555555555444433 33444444444555555555555555554444321 13344444444455
Q ss_pred hcCChhHHHHHHHHhhh
Q 009025 309 KAQRTDDVVRALNRLPE 325 (546)
Q Consensus 309 ~~g~~~~A~~~~~~m~~ 325 (546)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00025 Score=63.74 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=101.4
Q ss_pred hcCCHHHHH-HHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAF-GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~-~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
..++.++-+ .+.+.+......-+......-...|.+.|++++|++...... +......=...+.+..+++.|.
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333 233444444333333334444456677777777777665511 2223333334455666677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
+.+++|.+. .+..|.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-+..++...|++++|+.++++.
T Consensus 158 ~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 777777663 244555555555543 34566777777777654 4566777777777777777777777777777
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLE 290 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~ 290 (546)
..+. ..+..+...+|-.-...|.-. -..+.+.+++.
T Consensus 234 L~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 234 LDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred Hhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7665 445555555555555555443 33444455544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.004 Score=61.67 Aligned_cols=322 Identities=16% Similarity=0.135 Sum_probs=200.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 009025 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYG 207 (546)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 207 (546)
.+.+..|+++.|+..|-+.+... ++|.+.|..-..+|+..|++++|.+=-.+-++ +.|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999998876 56889999999999999999999876666665 4565 46788899999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------------------------H-----------------
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------------------------T----------------- 242 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------------~----------------- 242 (546)
++|+.-|.+-.+... -+...++-+..++..... +
T Consensus 87 ~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999998877632 245566666555511100 0
Q ss_pred ---HHHHHHHHHHHh--------CCC------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHH
Q 009025 243 ---DEAFEIFEDMKS--------SEN------CQP------------D----------SWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 243 ---~~A~~~~~~m~~--------~~~------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~ 283 (546)
+..+...-.+.. .+. ..| | ..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000000000000 000 001 0 0112366777777788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--CH----HHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP--DD----RFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~----~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
-+....+.. -+..-++....+|...|.+.+....-....+.|-.- |. ..+..+..++.+.++ +.+..+|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 888887754 355556666777888888877776666655544211 11 112223334444555 555555544
Q ss_pred HHH--------------------------cCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCc-cchhhHHHHHHH
Q 009025 357 VEK--------------------------SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDV-KKAYCNCLIDLC 408 (546)
Q Consensus 357 ~~~--------------------------~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~-~~~~~~~li~~~ 408 (546)
... .+|....-...-+..+.+.|++ ..|...+.++ ..+| |...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy-~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY-PEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 332 2233322223335556666755 6666666553 3444 567888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccc-hhhHHHHHHHHHHHHHHHHHcC
Q 009025 409 VNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS-LGAALTALHIWINDLSKALESG 471 (546)
Q Consensus 409 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~-~g~~~~a~~~~~~~~~~~~~~g 471 (546)
.+.|.+.+|++=-+..++.. |+. +.++. .|.+..++..|...++. ++.|
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~--p~~-----------~kgy~RKg~al~~mk~ydkAlea-y~ea 452 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD--PNF-----------IKAYLRKGAALRAMKEYDKALEA-YQEA 452 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC--chH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999888777776663 442 22333 37777778777777653 4444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00076 Score=68.70 Aligned_cols=190 Identities=13% Similarity=0.169 Sum_probs=124.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.|+++.|..-|-+... .-..+.+......|.+|+.+++.+.... .-.--|..+.+-|+..|+++.|.+
T Consensus 718 ~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHH
Confidence 56677777776654432 2234566677788999999999887653 233457778888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
+|.+. ..++-.|.+|.+.|++++|.++-++. .|.......|-+-..-+-+.|++.+|+++|-.+.
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---- 851 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---- 851 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----
Confidence 88653 23556788999999999998887654 3444456677777777778888888887775443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 322 (546)
.|+. .|.+|-+.|..++.+++.++-... .-..|...+..-|-..|++..|..-|-+
T Consensus 852 -~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 852 -EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred -CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 4543 356777777777776666543211 1122333444455555565555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=72.06 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
......|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..... +-+...+..-.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3445566777777889999999999988874 44 34457788888888889999999988764 557777777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.|.+.++.+.|.++.+++.+.. |+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8889999999999999998753 44 5689999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00022 Score=72.37 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=132.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
.|.+......+.+|+.+++.+.+... -..-|..+..-|+..|+++.|+++|-+.. .++-.|.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 34555667788888888888776632 23446777788899999999999887543 2455678999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 277 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
+|+.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+. .||. .|..|-+.|. ++..++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 9999988866543 344456677777777888899999988876553 3553 4667788887 77777665
Q ss_pred HHHHcCCC-hhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHH
Q 009025 356 CVEKSNSK-LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422 (546)
Q Consensus 356 ~~~~~~~~-~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 422 (546)
+- .++ ......-++..+...|+ +.+|++-|-+.. -|.+-++.|...+.|++|-.+-+
T Consensus 875 k~---h~d~l~dt~~~f~~e~e~~g~-lkaae~~flea~------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KH---HGDHLHDTHKHFAKELEAEGD-LKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Hh---ChhhhhHHHHHHHHHHHhccC-hhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 43 222 22233455566666674 477776665443 36677888888888888866554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00078 Score=62.97 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHH
Q 009025 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-----MGRAKRPWQVKT 177 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~a~~ 177 (546)
+.|++++-.+.+. =+..--.|+--|.+.+++.+|..+.+++.-. .|-......+..+ ........-|.+
T Consensus 271 EgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 271 EGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred ccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 4556655554432 2223333444566666666666665554311 1211111111111 111122334555
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.|+-.-+.+..-|.. --.++...+.-..++|+++-++..+..-=..-|...+ .+..+++..|.+.+|+++|-++....
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence 554444444333322 2233444444445566666666655543222222222 35566666666666666666655433
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 257 NCQPDSWTFS-SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 257 ~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
..|..+|. .|.+.|.+++..+.|++++-++.. ..+..+ ...+.+-|.+.+++--|-+.|+.+...
T Consensus 424 --ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 424 --IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred --hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 23444444 344566666666666666544432 112222 223334556666666666666666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.4e-06 Score=50.63 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0057 Score=54.90 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009025 135 GNFDGCLNVYEEMKAI---G-VKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209 (546)
Q Consensus 135 g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 209 (546)
.+.++.++++.+++.. | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 3445555555555422 2 334443 3455555666667777777777776664 21122221111222334577777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
|+++++.+.+.+ +.|.+++---+...-..|+--+|++-+.+..+.- ..|...|.-+...|...|++++|.-.++++.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777665 3366666666666666777777777776666543 5677777777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhhC
Q 009025 290 EAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPEL 326 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 326 (546)
-..+ .+...+..+.+.+.-. .+.+-|.++|.+..+.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5321 1334444555544333 3455677777777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00023 Score=59.59 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
.....+...+.+.|++++|.+.|+.+...+ +.+...|..+...+...|++++|..+|+.....+ +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 444455555666666666666666665543 2255566666666666666666666666665544 4455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009025 272 CSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~ 291 (546)
|...|++++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0018 Score=69.94 Aligned_cols=210 Identities=10% Similarity=0.040 Sum_probs=137.6
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------------------C
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG------------------V 152 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------------~ 152 (546)
..+..+.+.|++++|.++.+...+.... ....|-.+...+.+.++++++..+ .+...- .
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence 4455555899999999999977775221 233344444466666666665555 332210 0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 232 (546)
.-+...+..+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|... ++++|++++.+....-+ +..-|+.+
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~ 188 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGI 188 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHH
Confidence 1123567778888999999999999999999987 45889999999999999 99999999998876511 11112222
Q ss_pred HHHH-----HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 233 LAMC-----ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 233 i~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
...+ ....+++.-.++.+.+...-....-..++--+-..|....+++++..+|+.+++.... |.....-++.+|
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 2111 1122333444444444333111333445556667888899999999999999986544 666777788877
Q ss_pred H
Q 009025 308 G 308 (546)
Q Consensus 308 ~ 308 (546)
.
T Consensus 268 ~ 268 (906)
T PRK14720 268 K 268 (906)
T ss_pred H
Confidence 6
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.2e-06 Score=50.14 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 331 (546)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.025 Score=59.64 Aligned_cols=224 Identities=13% Similarity=0.144 Sum_probs=158.6
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
...+++.+|++..+.+.+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..|..++-.+|-+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3678899999999988876 3443 344555554 5789999999999888776644 88899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDE 244 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~ 244 (546)
|..+|++..+. -|+......+..+|.|.+++.+-.+.--+|-+. .+-+...+-++++.+.+.-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999875 467778888888999988877655544444332 23355666666666655321 235
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN-EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
|.+.++.+.+.+...-+..-...-...+...|++++|++++. ...+.-..-+...-+.-++.+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 677777777655201222222333445567888999999994 3444433445556667788889999999999999999
Q ss_pred hhCC
Q 009025 324 PELG 327 (546)
Q Consensus 324 ~~~~ 327 (546)
.+.|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=49.31 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 431 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 431 (546)
.+|+.+|.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-05 Score=49.42 Aligned_cols=33 Identities=36% Similarity=0.749 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 154 (546)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00032 Score=69.13 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
.-..|+..+...++++.|.++|+++.+.. |+ ....+++.+...++..+|.+++++..... +-|...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456667777889999999999998864 44 44457888888889999999999988653 336777777788899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+.++++.|+++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999864 45667999999999999999999999987663
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.027 Score=60.01 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAY 201 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~ 201 (546)
.|..|...|...-+..+|...|+...+.+ .-+...+..+.+.|++..++++|..+.-..-+... ..-...|.-..-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555555555666665555543 23444555555556666666665555222111100 00011111222334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCRGKVSE 280 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 280 (546)
.+.++...|+.-|+...+..+. |...|..+..+|...|++..|.++|.+.... .|+. ..---..-+.+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhHHH
Confidence 4555555555555555554332 5555666666666666666666666555442 2221 111111222344555555
Q ss_pred HHHHHHHHH
Q 009025 281 AEAMFNEML 289 (546)
Q Consensus 281 A~~~~~~m~ 289 (546)
|...+....
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00022 Score=55.38 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=46.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKR--------PWQVKTIYKEMTDNGLSPNWNTYAS 196 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~~~~~ 196 (546)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555677777777777777776 6677777777766555421 2234555666666666666666666
Q ss_pred HHHHHH
Q 009025 197 LLRAYG 202 (546)
Q Consensus 197 ll~~~~ 202 (546)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00096 Score=56.66 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=33.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
..+...|++++|...|+........++ ......+...+...|++++|+..++..... ......+......|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCC
Confidence 334444444444444444444321111 112222334444444444444444332211 122233334444444444
Q ss_pred CHHHHHHHHH
Q 009025 277 KVSEAEAMFN 286 (546)
Q Consensus 277 ~~~~A~~~~~ 286 (546)
+.++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00091 Score=56.81 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLL 198 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 198 (546)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 4788888888888887763 222 233334556788889999999999998887532221 2444567
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
..+...|++++|+..++...... .....+......|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888899999999987754332 34556777888899999999999988764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.002 Score=66.71 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=155.3
Q ss_pred CHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CC
Q 009025 120 DPNAFSTLIK--LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-G--------LS 188 (546)
Q Consensus 120 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--------~~ 188 (546)
|..|--.++. .|...|+.+.|.+-.+.++ +...|..|...|.+..+++-|.-.+..|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6677777764 5677899999988877665 4468999999999999999888777776432 1 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 189 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
++ .+-.-+.-.....|.+++|+.+|.+-++. ..|=..|-..|++++|.++-+.-.+ ..-..||-..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR----iHLr~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR----IHLRNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc----eehhhhHHHH
Confidence 21 22222333345779999999999987653 3445567789999999998765332 2234567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----------cCC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009025 269 ITICSCRGKVSEAEAMFNEMLE----------AGF---------EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~----------~~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (546)
..-+...++++.|++.|++... ..+ ..|...|..-...+-..|+.|.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 7777788899999888875321 110 11223333333344456777777777776553
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
|-+++...+-.|+ ++|.++-++- ....+-..|++.|...| .+.+|..+|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g-~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDG-DVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhH-HHHHHHHHHHHH
Confidence 4456666666777 7777665542 11223356778887777 457888877653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00037 Score=61.20 Aligned_cols=98 Identities=23% Similarity=0.434 Sum_probs=68.2
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------
Q 009025 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---------- 170 (546)
Q Consensus 106 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 170 (546)
...|+..... ..|..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 4466666432 45888999999998864 778888889999999999999999999999875521
Q ss_pred ------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 171 ------RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 171 ------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
+-+-|++++++|...|+-||..++..|++.+++.+
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 12335555555555555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.012 Score=62.62 Aligned_cols=223 Identities=13% Similarity=0.159 Sum_probs=142.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
.-+.++.|.+.-++.. .+.+|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.+++-.+
T Consensus 1087 ~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 4567888877766653 6778999999999999999998877442 466789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-- 255 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 255 (546)
.+...++..-+|... +.||-+|++.++..+-++++. -|+......+.+-|...|.++.|.-+|.....-
T Consensus 1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~ 1225 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAK 1225 (1666)
T ss_pred HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHH
Confidence 888877776555544 578889999988877655432 134444444444444444444444333322100
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 256 -----------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 256 -----------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 318 (546)
..-.-+..||..+..+|...+.+..| +|...++.....-..-++..|-..|-+++.+.
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 00022445666666666655554433 23222233344556678888889999998888
Q ss_pred HHHHhhhCCC-CCCHHHHHHHHHHHhcCCHH
Q 009025 319 ALNRLPELGI-TPDDRFCGCLLNVMTQTPKE 348 (546)
Q Consensus 319 ~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~ 348 (546)
+++.... + +...-.|+-|.-.|++-..+
T Consensus 1301 l~Ea~LG--LERAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1301 LLEAGLG--LERAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred HHHhhhc--hhHHHHHHHHHHHHHHHhcCHH
Confidence 8776542 2 12234566666666666553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00031 Score=69.46 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009025 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263 (546)
Q Consensus 186 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (546)
+...+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=..-|+ -||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CCChh
Confidence 33446666666777776667777777777666543 1111223445777777777777777777777777775 67777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
+++.|++.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777766655555556655555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00076 Score=59.30 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CChhHHH
Q 009025 259 QPDSWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVV 317 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~ 317 (546)
..+..+|..+++.|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 355666666667777777777777777777765432 3346799
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HHHHHH
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKL 353 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~a~~~ 353 (546)
+++++|...|+.||..|+..|++.+.+.+. ....++
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999998887 444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.5e-05 Score=45.78 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLEV 429 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 429 (546)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.085 Score=55.83 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=147.9
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 160 (546)
-|+.+.+..+..+... |.|+.++|..+++.....+.. |..|...+-..|-+.|+.++|..+|++.... .|+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHH
Confidence 4566666666666655 999999999999888776555 8889999999999999999999999999876 58888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHcC-CCcCHHHH
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----------YGEDTLSVYREMKEKG-MQLSVTLY 229 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~A~~~~~~m~~~g-~~~~~~~~ 229 (546)
.+..+|.|.+++.+-.++=-+|-+. ++-+.+.+-++++.+...- -..-|.+.++.+.+.+ ..-+..-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 8999999999886654444444332 3345666666666665432 1234667777777654 22222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
......+-..|++++|++++..-........+...-+.-+..+...+++.+..++-.++...|.
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 3334455678899999999954333322245555566778888999999999999999888764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00045 Score=68.39 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=86.1
Q ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009025 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194 (546)
Q Consensus 117 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 194 (546)
.+.+......++..+....+.+++..++.+.... ....-..|..+++..|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3446666666677776667777777777776654 22222345567888888888888888888777777888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 195 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877777665555666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00059 Score=53.09 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCcCHHHH
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRAR--------YGEDTLSVYREMKEKGMQLSVTLY 229 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~ 229 (546)
....|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455666666888888888888888887 778888888887776543 233455666666666677777777
Q ss_pred HHHHHHHHh
Q 009025 230 NTLLAMCAD 238 (546)
Q Consensus 230 ~~li~~~~~ 238 (546)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 776666543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00086 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m 252 (546)
+...+...|++++|.+.|+..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444433333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4e-05 Score=45.50 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00088 Score=51.31 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
+..+...+...|++++|..++++..+.. +.+...+..+...+...|++++|.+.|+........ +...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 5566777788889999999998887764 445577778888888889999999999888775432 4467778888888
Q ss_pred hcCChhHHHHHHHHhhh
Q 009025 309 KAQRTDDVVRALNRLPE 325 (546)
Q Consensus 309 ~~g~~~~A~~~~~~m~~ 325 (546)
..|++++|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88999999888887765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.011 Score=62.92 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
...+...|-+..+. .++ ...|..|...|....+...|.+.|+...+.+-. |...+....+.|+...++++|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44555555444443 222 467888888888888888999999988876432 67778888899999999999998843
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
..-+......-...|....-.|.+.++...|..-|+...+..+. |...|..+.++|..+|++..|+++|.+... ++|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 33322110111223334555678888999999999988876543 788899999999999999999999988876 456
Q ss_pred CHHHHHHHHH--HHhcCCH-HHHHHHHHHHHH
Q 009025 331 DDRFCGCLLN--VMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 331 ~~~t~~~ll~--~~~~~g~-~~a~~~~~~~~~ 359 (546)
+.. |..+-. ..+..|. .++...+..+..
T Consensus 628 ~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LSK-YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 653 222222 2244566 777777766654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0027 Score=51.58 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=3.9
Q ss_pred CCHHHHHHHHH
Q 009025 240 GYTDEAFEIFE 250 (546)
Q Consensus 240 g~~~~A~~~~~ 250 (546)
|++++|.+.++
T Consensus 90 ~~~~~A~~~~~ 100 (119)
T TIGR02795 90 GDKEKAKATLQ 100 (119)
T ss_pred CChHHHHHHHH
Confidence 33333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.019 Score=57.09 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
-+++..+++...+.-..-+..+|..+.+---.. ...+....++++++..-..--..+|..+|+.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345555665554432222333444333221111 12445555666665532222234677777777777788888888
Q ss_pred HHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009025 214 YREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 214 ~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
|.+..+.+..+ ++..+++++.-|| .++.+-|.++|+.-.+.- .-+..--...+..+...++-..+..+|++.+..+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 88888776665 6777777777666 456778888888755542 2233333456677777788888888888888765
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 293 FEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 293 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+.++ ...|..+|+-=..-|++..++++-+++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5444 46788888877778888888877777654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0023 Score=63.21 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=56.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
..+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..++++.... +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 3445566666666666666665432 45566666666666666666666666666654 44555666666666666666
Q ss_pred HHHHHHHHHHHHc
Q 009025 279 SEAEAMFNEMLEA 291 (546)
Q Consensus 279 ~~A~~~~~~m~~~ 291 (546)
++|...|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0056 Score=53.70 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
.+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +-+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 344444455555555555555555544322111 2345555555555566666666655555532 234444555555
Q ss_pred HHHhcCCH
Q 009025 271 ICSCRGKV 278 (546)
Q Consensus 271 ~~~~~g~~ 278 (546)
.|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 55555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0043 Score=50.33 Aligned_cols=97 Identities=8% Similarity=0.014 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYAS 196 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 196 (546)
++..+...+.+.|++++|.+.|+.+.+.. |+ ...+..+..++.+.|+++.|.+.|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45566667777788888888887776542 22 345566777778888888888888877764211 12455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
+..++.+.|+.++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7777777888888888888777764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0044 Score=59.02 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 236 (546)
+|..++..+-+.+..+.|..+|.+.++.+. .+..+|.....+-.+ .++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666654321 122333333333222 34444566666666554 333556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 237 ADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
...++.+.|..+|++....- .++ ...|...++.=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665441 221 13555556655666666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.004 Score=54.38 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
...+..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|++.+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 3445555556666666666666666665442221 12356666666667777777777776666543 3334445555
Q ss_pred HHHHH-------hcCCHHHHHHHHH
Q 009025 269 ITICS-------CRGKVSEAEAMFN 286 (546)
Q Consensus 269 i~~~~-------~~g~~~~A~~~~~ 286 (546)
...+. ..|++++|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55555 5555554444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.003 Score=62.36 Aligned_cols=92 Identities=13% Similarity=-0.033 Sum_probs=66.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 009025 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242 (546)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 242 (546)
...+...|+++.|+++|++.++... -+...|..+..+|.+.|++++|+..++++.+... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 4456667788888888888777532 3566777777778888888888888887777642 2566777777778888888
Q ss_pred HHHHHHHHHHHhCC
Q 009025 243 DEAFEIFEDMKSSE 256 (546)
Q Consensus 243 ~~A~~~~~~m~~~~ 256 (546)
++|+..|++.....
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.005 Score=58.83 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHh
Q 009025 240 GYTDEAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-----PNLF-VLTSLIQCYGK 309 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~ 309 (546)
|++++|++.|++..+. +...--..++..+...+.+.|++++|.++|+++...... .+.. .|-..+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5566666666554432 100001223445556666666666666666666543221 1111 12223334555
Q ss_pred cCChhHHHHHHHHhhh
Q 009025 310 AQRTDDVVRALNRLPE 325 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~ 325 (546)
.|+...|.+.|++...
T Consensus 209 ~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 209 MGDYVAARKALERYCS 224 (282)
T ss_dssp TT-HHHHHHHHHHHGT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5666666666666653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00037 Score=52.84 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~ 251 (546)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33333344444444433333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=62.23 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-----CCH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEML----EAGFE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-----PDD 332 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~ 332 (546)
..|..|.+.|.-.|+++.|+...+.=+ +.|-+ .....+..+.+++.-.|+++.|.+.|+......+. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456677777777788888877665422 22211 12345667777788888888888887765422111 122
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 333 RFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
..+.+|.+.|.-... +.|+.++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334445555554444 44544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00039 Score=52.72 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHhCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 99 AGNVEMAFGLYDRARNEKWR-IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
.|+++.|+.+|+.+...... ++...+..+..+|.+.|++++|+.+++. .+.+ ..+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666654221 1333444456666666666666666655 2211 1122333344555666666666666
Q ss_pred HHHH
Q 009025 178 IYKE 181 (546)
Q Consensus 178 ~~~~ 181 (546)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0096 Score=52.19 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 444677788888888999999999998876532222 3577788888888999999999988888753 2245666677
Q ss_pred HHHHHhcCChHHHHHH
Q 009025 198 LRAYGRARYGEDTLSV 213 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~ 213 (546)
..+|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775544433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.004 Score=59.25 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+.- ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 344445555555555555555555543211 112222222222 111333444555555544432 3344444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+.+.|+.+.|..+|++.... + +.. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555544432 1 111 2444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.016 Score=59.92 Aligned_cols=147 Identities=9% Similarity=-0.003 Sum_probs=88.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 009025 186 GLSPNWNTYASLLRAYGRA-----RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV--------GYTDEAFEIFEDM 252 (546)
Q Consensus 186 g~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m 252 (546)
+.+.|...|...+++.... ++.+.|..+|++..+.... ....|..+..++... +++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445677777777765432 2356788888888776322 244444443333221 1223334444443
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
........+...|..+.-.....|++++|...+++..+.+ |+...|..+...|...|+.++|.+.|++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 3321113455667777666666788888888888877744 5777777778888888888888888877765 34555
Q ss_pred HHHHH
Q 009025 333 RFCGC 337 (546)
Q Consensus 333 ~t~~~ 337 (546)
.||..
T Consensus 487 pt~~~ 491 (517)
T PRK10153 487 NTLYW 491 (517)
T ss_pred chHHH
Confidence 45443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0068 Score=50.96 Aligned_cols=89 Identities=8% Similarity=-0.037 Sum_probs=46.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
.-+...|++++|.++|+.+...... +..-|-.|..++-..|++++|+..|....... +-|...+-.+..++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCH
Confidence 3344555555555555555544322 34444455555555555555555555555544 34445555555555555555
Q ss_pred HHHHHHHHHHHH
Q 009025 279 SEAEAMFNEMLE 290 (546)
Q Consensus 279 ~~A~~~~~~m~~ 290 (546)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0067 Score=50.98 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
....-.+..-+...|++++|.++|+.+...+ +-+..-|-.|.-++-..|++++|+..|......++. |...+-.+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 4445556667788999999999999988765 567778888999999999999999999998887653 6788888899
Q ss_pred HHHhcCChhHHHHHHHHhhh
Q 009025 306 CYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~ 325 (546)
++...|+.+.|.+.|+..+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999887764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0086 Score=52.26 Aligned_cols=113 Identities=8% Similarity=-0.009 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHH-hCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 009025 102 VEMAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTI 178 (546)
Q Consensus 102 ~~~A~~l~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~ 178 (546)
+..+...+..+. ..+-.-....|..+...+...|++++|+..|+........+ ...+|..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444445553 33222345567778888888899999999999987653222 234788888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHH
Q 009025 179 YKEMTDNGLSPNWNTYASLLRAYG-------RARYGEDTLSVYR 215 (546)
Q Consensus 179 ~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~~~A~~~~~ 215 (546)
++...... +....++..+...|. +.|+++.|...++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 98888752 223455666666665 5566654444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.11 Score=48.26 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=32.3
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAF---STLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.+.|++++|...|+.+...-... .... -.++.+|.+.+++++|...|++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 36677777777777776642221 2222 23456666777777777777777665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=55.59 Aligned_cols=145 Identities=14% Similarity=0.194 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEA----GFEPN--LFVLTSLI 304 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li 304 (546)
.+..|...|++..|-+++.++ ...|... |++++|.+.|++..+. + .+. ...+..+.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 334455666666665555544 4566666 8899999998887642 2 111 34567778
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCC-----CHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-----HHHHHHH
Q 009025 305 QCYGKAQRTDDVVRALNRLPELGITP-----DDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-----YVVKLLL 372 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-----~~~~~L~ 372 (546)
..+.+.|++++|+++|++....-... +.. .|...+-++...|+ ..|.+.++......|... .++.-|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 88999999999999999987643221 111 22223334455667 788888887776655432 2445555
Q ss_pred Hhhhhh-cchHHHHHHHHHhcc
Q 009025 373 EEQDIE-GDFKKEATELFNSIS 393 (546)
Q Consensus 373 ~~~~~~-g~~~~~A~~~~~~~~ 393 (546)
.++-.. .+.++++..-|+.+.
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHHcccC
Confidence 554332 223455555555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.019 Score=46.50 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=26.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
++-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|+.+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12333344455555555555555555444
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.002 Score=48.23 Aligned_cols=76 Identities=32% Similarity=0.543 Sum_probs=59.9
Q ss_pred eeecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeccccccc-chhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009025 441 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS-DKGLASVFESHLKELNAPFHDSPDKVGWF 519 (546)
Q Consensus 441 ~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~l~~~f~~~~~~~G~~ 519 (546)
|.+++|+++.++|..++..|+....+ .+ .+..+.|.||.|.|+.. ...+...+...+....-+|.+. .|.|.+
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~---~~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARL---KG--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHH---cC--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 67899999999999999998887764 33 22468999999999863 2457888888888777777664 899998
Q ss_pred EEe
Q 009025 520 LTT 522 (546)
Q Consensus 520 ~~~ 522 (546)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 864
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.059 Score=50.03 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
+.+.|.+.|.+..|..-|+.+++. +..........++.+|...|..++|..+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334455555555555555555442 111122333444455555555555544433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.033 Score=57.66 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+...|.++.-.....|++++|...+++..... |+...|..+...|...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555555555555666666666666666643 45666666666666666666666666666553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.12 Score=47.00 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH---
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI--- 269 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li--- 269 (546)
+.+.++..+.-.|.+.-...++.+.++...+.+......|.+.-.+.|+.+.|...|++..+... +.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 45566777777788888888888888877677888888888888889999999999887776543 55555555443
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009025 270 --TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338 (546)
Q Consensus 270 --~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 338 (546)
..|.-.+++..|...|++....+.. |....|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3455667788888888887765433 5555555444555568888888888888763 4555444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0084 Score=55.33 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=41.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 282 (546)
+.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHHH
Confidence 444555555555555544222 44444444555555555555555554444432 223444555555555555555555
Q ss_pred HHHHHHHH
Q 009025 283 AMFNEMLE 290 (546)
Q Consensus 283 ~~~~~m~~ 290 (546)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55554444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.19 Score=43.16 Aligned_cols=138 Identities=11% Similarity=0.068 Sum_probs=83.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHH
Q 009025 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLT 301 (546)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~ 301 (546)
.|++..--.|..++...|+..+|...|++... |...-|......+.++....+++..|...++++.+.... .+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45666666677777777777777777777664 334667777777777777777777777777776654210 1223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCC
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKLVECVEKSNSK 363 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~a~~~~~~~~~~~~~ 363 (546)
.+...|...|++.+|...|+..... -|+...-......+.+.|. .+...+++.+.+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 5566677777777777777777763 3444433333334444553 3333455555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.082 Score=47.69 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=32.5
Q ss_pred hhcCCHHHHHHHHHHHHhCC--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 97 TRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.+.|++++|...|+.+...- -+--..+.-.++.++.+.|+++.|...|++..+.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36777777777777776531 1222334555666777777777777777776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0026 Score=45.77 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=39.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 162 (546)
+.|++++|+.+|+.+....+. +...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 566777777777777665333 6666667777777777777777777777665 3554444433
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.05 Score=49.25 Aligned_cols=140 Identities=9% Similarity=0.058 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH----
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---- 233 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---- 233 (546)
..+.++..+...|.+.-...++.++++...+-+......|++.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556777777788888899999999997766788889999999999999999999999877654444555544443
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 234 -~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
..|.-.+++.+|...|.++...+ ..|.+.-|.-.-...-.|+..+|.+.++.|++.. |...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 44556778899999999988776 4566666654445555789999999999999864 4443333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.2 Score=43.07 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 189 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
|++..--.|..+..+.|+..+|...|++...--+.-|....-.+..+....+++.+|...++++.+...-.-...+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33433444444444444444444444444432223344444444444444444444444444444321101111223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+.|...|+..+|+.-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444445555555555554444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.068 Score=43.24 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 131 YGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+-..|+.++|+.+|++..+.|.... ...+-.+...+...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555544443322 12333344444444555555555544443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.13 Score=52.81 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL---- 300 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---- 300 (546)
|....-.+..++...|.-++|.+.|-+.. .|- ..+..|...+++.+|.++-+...- |.+.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~ 916 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQ 916 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHH
Confidence 45556667777777777777777665432 221 234566666777777666544322 222221
Q ss_pred ----------HHHHHHHHhcCChhHHHHHHHHhh
Q 009025 301 ----------TSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 301 ----------~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.--|..+.++|+.-+|.+++.+|.
T Consensus 917 aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 112444566666666666666665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=54.31 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=71.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChh
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 314 (546)
+.+.+++.+|+..|.+.+... +-|.+-|..=..+|.+.|.++.|++-.+..+..+ |. ..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 456778888888888887764 5677777777888888888888887777776632 33 457777788888888888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009025 315 DVVRALNRLPELGITPDDRFCGCLLN 340 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p~~~t~~~ll~ 340 (546)
+|++.|++.++ +.|+-.+|-.=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 88888877776 5677666554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.097 Score=47.19 Aligned_cols=62 Identities=6% Similarity=-0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGV--KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (546)
+-.....+...|++.+|...|+.+...-. +--....-.++.++.+.|+++.|...++++++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444556677888888888888876521 112334556677778888888888888887764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0059 Score=43.88 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=21.5
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.|++++|+++|+++...... +...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443211 334444444444444444444444444444
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.093 Score=48.85 Aligned_cols=117 Identities=10% Similarity=0.052 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHH
Q 009025 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---RPWQVKTI 178 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~ 178 (546)
++....-++.-.+.++. |...|-.|..+|...|+++.|..-|.+..+.. .+|...+..+..++.... +..++.++
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444444444444333 77788888888888888888888888877663 345666666666544332 34567777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 179 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
|++++.... -|..+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777777532 355566666667777788888888887777663
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0071 Score=43.05 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=20.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|..+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444332 2233334444444444444444444444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0067 Score=43.77 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEML 289 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 289 (546)
.+|..+...+...|++++|+..|++..+.. +-+...|..+..+|...| ++++|.+.|++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444432 233444444444444444 3444444444443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0057 Score=43.54 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+...+.+.|++++|.+.|+++++.... +...+..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677888888888888888876532 567777888888888888888888888875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.7 Score=44.59 Aligned_cols=297 Identities=13% Similarity=0.040 Sum_probs=181.7
Q ss_pred HHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHH
Q 009025 124 FSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT--MGRAKRPWQVKTIYKEMTDNGLSPNWN--TYASL 197 (546)
Q Consensus 124 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l 197 (546)
|..|-.++.- .|+-..|.++-.+.... +.-|..-.-.|+.+ -.-.|+++.|.+-|+-|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4555555544 46777777766654322 23444444455544 34469999999999999863 2211 12223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHH--
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICS-- 273 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~-- 273 (546)
.-.-.+.|+.+.|..+-+..-+.-.. =...+.+.+...+..|+++.|+++++.-....++.++..--. .|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33335678889998888887665322 357788999999999999999999998777665566544222 2222211
Q ss_pred -hcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HH
Q 009025 274 -CRGKVSEAEAMFNEMLEAGFEPNLFVL-TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EE 349 (546)
Q Consensus 274 -~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~ 349 (546)
-..+...|...-.+..+ +.||.+-- ..-..++.+.|+..++-.+++.+-+....|+ ..... ...+.|+ ..
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCCcHHH
Confidence 12334445554444443 45664332 3345678899999999999999987654444 33322 3455665 33
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNL-NLLENACKLLELGLTL 427 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 427 (546)
-.+-.+.+....|+.....-.+.++-...|+. ..|..--+.. ...|....|..|.+.-.-. |+-.++...+-+..+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEF-SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 34445556666776665554555544444533 4444333332 2345667888888876554 9999999999988765
Q ss_pred ccccC
Q 009025 428 EVYTD 432 (546)
Q Consensus 428 g~~p~ 432 (546)
--.|.
T Consensus 393 PrdPa 397 (531)
T COG3898 393 PRDPA 397 (531)
T ss_pred CCCCc
Confidence 44443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.087 Score=53.62 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
++-.++..=.+|.+-.+ +-+.+.-+++|+++|-.|+... +...|+-.|++.+|.++|.+ .|.+ |-.
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRA 664 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRA 664 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhH
Confidence 34445555667776655 3445566778888887788765 44557778889999888864 3433 234
Q ss_pred HHHHHhcCChHHHHHHHHH-------HH--Hc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC--CC
Q 009025 198 LRAYGRARYGEDTLSVYRE-------MK--EK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFED------MKSSEN--CQ 259 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~-------m~--~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~--~~ 259 (546)
+.+|.....+|.|.+++.. |. ++ ....|..-=.+....+...|+.++|..+.-+ +.+.+. -.
T Consensus 665 lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 665 LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence 4555555555555555421 11 10 0000000001223444456666666554321 111110 13
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------
Q 009025 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------ 333 (546)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 333 (546)
.+..+...+...+.+...+..|.++|.+|-+. ..+++.....++|++|+.+-+...+ ..||..
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 45556666666667778888999999988652 3466778889999999999888765 344432
Q ss_pred -----HHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 334 -----FCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 334 -----t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
-|.-.-.++.+.|. .||.++++++..
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 23334456666777 777777766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.12 Score=48.15 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
|...|-.|...|...|+++.|..-|....+.. .++...+..+..++.... +-.++.++|++++..+.. |+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 66777777777777777777777777776654 455555555555544332 345677777777765432 555666
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666777777777777777777764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.37 Score=46.77 Aligned_cols=220 Identities=11% Similarity=-0.012 Sum_probs=111.3
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 174 (546)
+-+..++..|+..+....+..+. ++.-|..-...+...|++++|.-=.+.-.+. +|. ...+.-.-.++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 33777889999999988887544 4555666666666777777776655554432 111 1123333333444444444
Q ss_pred HHHHHHH---------------HHHCC-CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH--H
Q 009025 175 VKTIYKE---------------MTDNG-LSPNWNTYASL-LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--M 235 (546)
Q Consensus 175 a~~~~~~---------------m~~~g-~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~ 235 (546)
|.+.++. ..... -+|...++-.| ..++.-.|+.++|..+--...+.. ....+..+++ +
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLC 212 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccc
Confidence 4433331 11110 01222333322 234455677777776665555542 1223333333 3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------------ITICSCRGKVSEAEAMFNEMLEA---GFEPNLFV 299 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~ 299 (546)
+.-.++.+.|...|++.++.+ |+...-..+ .+...+.|.+..|.+.|.+.+.. +..++...
T Consensus 213 ~yy~~~~~ka~~hf~qal~ld---pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLD---PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred cccccchHHHHHHHhhhhccC---hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 334566777777777776643 443322111 12234455566666666555532 23334444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
|........+.|+.++|+.--++..
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhh
Confidence 4444445555555666555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.019 Score=55.09 Aligned_cols=268 Identities=16% Similarity=0.061 Sum_probs=162.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHH--HHC--CCC-CCHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEM--KAI--GVK-PNMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-p~~~~~~~ 161 (546)
.....+|+.|+...-+.+|+...+-|.. |. ..|..|..+|.-.+++++|+++...= ..+ |-+ -...+...
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 3445677999999999999999987744 43 35667778888888999998875431 111 100 01122233
Q ss_pred HHHHHHhcCChhHHHHHH----HHHHHCCCC-CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 009025 162 LLDTMGRAKRPWQVKTIY----KEMTDNGLS-PNWNTYASLLRAYGRARY--------------------GEDTLSVYRE 216 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~----~~m~~~g~~-p~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~ 216 (546)
|.+.+--.|.+++|.-.- +...+.|-. .....+..+...|...|+ ++.|.++|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 444444455666654321 112222211 123445556666655542 3445555543
Q ss_pred HHH----cCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 217 MKE----KGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 217 m~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
-.+ .|-. .-...|..|...|.-.|+++.|+...+.-. +-|.-......+..|.+++.-.|+++.|.+.|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 221 1100 012356666666677789999987765432 2221122345788899999999999999999886
Q ss_pred HHH----cCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh----C-CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 288 MLE----AGF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE----L-GITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 288 m~~----~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
-.. .|- .....+...|.+.|.-..++++|+.++.+-.. . +..-....|-+|.+++...|. ++|..+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 542 221 12345566788888888899999998876542 1 122244678889999999888 888877665
Q ss_pred HHH
Q 009025 357 VEK 359 (546)
Q Consensus 357 ~~~ 359 (546)
..+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.64 Score=44.95 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
|.-+...|+...|.++-.+. . .||..-|-..|.+++..++|++-.++... +..++-|..++..|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 33334445544444443332 1 23555555555555555555544443221 1112445555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
..+|..++.++ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 55555554441 112334445555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=42.18 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTD 184 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~ 184 (546)
++.+|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555566666666666666666666665543 223445555555666665 46666666655544
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.11 Score=48.77 Aligned_cols=89 Identities=11% Similarity=-0.010 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC----HHHHHHHHHHHhcCC
Q 009025 273 SCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLNVMTQTP 346 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g 346 (546)
.+.|++++|...|+.+++...... ...+..+...|...|++++|...|+.+.+.- |+ ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHHHHHHHHHHcC
Confidence 334444444444444444321110 1233444444445555555555555444321 11 122222333333444
Q ss_pred H-HHHHHHHHHHHHcCCC
Q 009025 347 K-EELGKLVECVEKSNSK 363 (546)
Q Consensus 347 ~-~~a~~~~~~~~~~~~~ 363 (546)
+ ++|.+.++.+.+..|+
T Consensus 232 ~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 4 5555555554444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.94 Score=44.38 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=39.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIG---VKPNMITYNNLLDTMGR---AKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
.++-.|-...+++..+++++.|...- +.-+..+-....-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666666666666666665431 11111222223334444 5666666666666544444455666665555
Q ss_pred HH
Q 009025 200 AY 201 (546)
Q Consensus 200 ~~ 201 (546)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.032 Score=50.98 Aligned_cols=105 Identities=16% Similarity=0.302 Sum_probs=66.2
Q ss_pred ccCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 009025 118 RIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 192 (546)
+.|-.+|.+.+..+... +.++-....++.|.+.|+..|..+|+.||+.+-+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 44666777777666543 45666777788999999999999999999876543221 11 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
.+....-.|-+ +-+-+++++++|...|+-||..+-..|+.++++.+.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11112112211 123366777777777777777777777777766664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.078 Score=49.69 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.3
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~ 253 (546)
+...|+.++|.++|+.+.
T Consensus 227 ~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 333444444444444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.11 Score=42.53 Aligned_cols=52 Identities=6% Similarity=-0.022 Sum_probs=30.7
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
..|+..+..+++.+|+.+|++..|+++++...+...++.+..+|..|++-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666666666665554434555566666655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.067 Score=43.76 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHh
Q 009025 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCAD 238 (546)
Q Consensus 186 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~ 238 (546)
.+.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35577888888888888888888888888876643 566677778877765543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.038 Score=46.84 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV 299 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 299 (546)
+...++..+...|++++|.++.+.+.... +.|...|..+|.+|...|+...|.++|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455555666666666666666666654 45666666666666666666666666665542 355555433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.8 Score=47.43 Aligned_cols=177 Identities=10% Similarity=0.102 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSP--------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p--------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 223 (546)
.|.+..|..|.......-+++-|+..|-+.... |++. +...-.+=|.+| -|++++|+++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 578888887777666666666666665444321 2211 111112223333 37888888888777665
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009025 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303 (546)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 303 (546)
| ..|..+.+.|++-...++++.--....-.--...|+.+...+.....+++|.+.|..-.. -...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2 235556677777666666543211100011234667777777777777777776654322 1123
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
+++|.+..++++...+-..+. -|....-.+..++...|. ++|.+.+
T Consensus 829 ~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHH
Confidence 455555555554444433332 233344445556666666 5555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.084 Score=48.34 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVRALNRLPELGITPDDRFCGCLLNV 341 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 341 (546)
++-....++.|.+.|+..|..+|+.||+.+-+. .+-+-++.++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 333334444455555555555555555443221 2234578899999999999999999999999
Q ss_pred HhcCCH--HHHHHHHHHHHH
Q 009025 342 MTQTPK--EELGKLVECVEK 359 (546)
Q Consensus 342 ~~~~g~--~~a~~~~~~~~~ 359 (546)
+.+.+. .+..++.--|-+
T Consensus 168 FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 168 FGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hccccccHHHHHHHHHhhhh
Confidence 988887 555555444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.6 Score=42.96 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhh
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 378 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 378 (546)
|-..|+.-.+..-++.|..+|-+..+.| +.++..++++++.-++......|.++|+.-.+.-++....++-....+...
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4445555566666788888888888877 566777888888877766558888888877776666665553333333344
Q ss_pred cchHHHHHHHHHhccc----CccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 379 GDFKKEATELFNSISK----DVKKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 379 g~~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
++ -+.|..+|+.... ..-..+|..+|+--..-|+...+..+=++|.
T Consensus 480 nd-e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 480 ND-EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred Cc-HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 53 3778888885332 2224588888888888888877766666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.078 Score=44.89 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCcCHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK-----EKGMQLSVTL 228 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~ 228 (546)
+...++..+...|+++.|.++.+.+.... +.|...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556666777777777777777777653 3366777777777777777777777777654 3477776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.03 Score=41.47 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
|+.+...|...|++++|+..|++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.038 Score=40.25 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444444222 344444444444444444444444444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.4 Score=39.67 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HH
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~ 349 (546)
+...++.+.+...+.+............+..+...+...++++.|...+...... .|+ ...+..+...+...+. ++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHH
Confidence 4444555555555555444211112344444444555555555555555555432 122 2222223333333333 55
Q ss_pred HHHHHHHHHHcCCC
Q 009025 350 LGKLVECVEKSNSK 363 (546)
Q Consensus 350 a~~~~~~~~~~~~~ 363 (546)
+...+.......+.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 55555555554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.047 Score=39.74 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.|.+.+++++|.++++.+...+ +.+...+......+.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555555443 33444444455555555555555555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.039 Score=40.83 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LS-VTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.+|+.+...|...|++++|+..|++..+. |-. ++ ..+++.+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666777777777766665532 111 11 3456666666666677777766666654
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.2 Score=41.30 Aligned_cols=288 Identities=14% Similarity=0.110 Sum_probs=174.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChh
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRAKRPW 173 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~ 173 (546)
-.|+-..|.++-.+..+. +.-|....-.|+.+-. -.|+++.|.+-|+-|... |.... ...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 568888888877765532 2335555555555443 469999999999999863 33221 233444456788989
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHH--HHHHHHHHHH---hcCCHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVT--LYNTLLAMCA---DVGYTDEAFE 247 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~--~~~~li~~~~---~~g~~~~A~~ 247 (546)
.|...-++.-..-. --.....+.+...+..|+++.|+++++.-+... +.++.. .-..|+.+-. -.-+...|..
T Consensus 172 aAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888877765422 134678889999999999999999998766442 233332 1222222211 1234555666
Q ss_pred HHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-
Q 009025 248 IFEDMKSSENCQPDSWT-FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE- 325 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 325 (546)
.-.+..+. .||..- -..-.+++.+.|++.++-.+++.+-+....|++. ..|.+..--|.++.-+++..+
T Consensus 251 ~A~~a~KL---~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 251 DALEANKL---APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHhhc---CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHH
Confidence 55555543 555443 3345678899999999999999998876666542 234333334455555555442
Q ss_pred CCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh-hhhcchHHHHHHHHHhcccCccchhh
Q 009025 326 LGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ-DIEGDFKKEATELFNSISKDVKKAYC 401 (546)
Q Consensus 326 ~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~-~~~g~~~~~A~~~~~~~~~~~~~~~~ 401 (546)
..++||. .....+..+-...|+ ..|..--+...+..|....+ -+|.+.- ...||. .++...+.+....|-.+.|
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~-lLlAdIeeAetGDq-g~vR~wlAqav~APrdPaW 398 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAY-LLLADIEEAETGDQ-GKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHH-HHHHHHHhhccCch-HHHHHHHHHHhcCCCCCcc
Confidence 2356655 455566666666776 55555555556666654433 3444332 333644 7777776655443333333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.87 Score=38.74 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=56.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009025 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 312 (546)
..-+...|++++|..+|.-+...+ .-+..-|..|...|-..+++++|...|......+. -|...+-....+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 334456677777777777766554 34455556666666667777777777766554332 234445555667777777
Q ss_pred hhHHHHHHHHhhh
Q 009025 313 TDDVVRALNRLPE 325 (546)
Q Consensus 313 ~~~A~~~~~~m~~ 325 (546)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.1 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=8.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~ 251 (546)
++..|.+.+.++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 33444444444444444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.48 Score=40.28 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=66.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
+...|++++|..+|.-+...+.- +..-|..|..++-..+++++|+..|......+ .-|...+-.....|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHH
Confidence 35678999999999887765433 55667777788888889999999888876654 3444556667788888899999
Q ss_pred HHHHHHHHHH
Q 009025 281 AEAMFNEMLE 290 (546)
Q Consensus 281 A~~~~~~m~~ 290 (546)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9998888876
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.36 Score=47.96 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=40.4
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.|+.+.+..-+...++ +.|++++|+..|++.++.. |+. .+|..+..+|...|++++|++.|++..+.
T Consensus 71 dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555443433333 6677777777777766653 332 34666777777777777777777776653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.8 Score=41.38 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH-HHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF-SSMI 269 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~li 269 (546)
.+|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|.++|+.-... -||...| .-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 455666666667777777777777777766 4566777777776555 45666777777764443 3444443 3445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009025 270 TICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 343 (546)
..+...++-+.|..+|+...++ +..+ ...|..+|+-=..-|++..+..+-++|.+ +-|...+...+..-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5566677777777777754432 1112 35666777766667777777766666665 3455444444444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.37 Score=47.88 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (546)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999998886 4664 35888999999999999999999998874
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.19 E-value=3.5 Score=40.49 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 160 NNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLLRAYGR---ARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
..++-+|-...+++...++.+.|.... +.-...+--...-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556777788888888888887641 11122222233345555 788888888888865555556777777766
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHh
Q 009025 234 AMCAD---------VGYTDEAFEIFEDMKS 254 (546)
Q Consensus 234 ~~~~~---------~g~~~~A~~~~~~m~~ 254 (546)
..|-. ....++|+..|.+.-.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 65532 1134555555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.8 Score=37.14 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 141 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
++.++.+.+.+++|+...|..+++.+.+.|++... ..++..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34455556667777777888888888877775543 34444555555554444443332 2233444444444443
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 221 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
=...+..++..+...|++-+|.++.+...... .. ....++.+-.+.+|...-..+|+-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~--~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD--SV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11245666777777888888888777654322 12 223455555555665554445444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.6 Score=36.42 Aligned_cols=85 Identities=11% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 204 (546)
..++..+.+.+.......+++.+...+ ..+...++.++..|++.+. ....+.++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 2455666666666665432 222333321 1 1223334456666666
Q ss_pred CChHHHHHHHHHH
Q 009025 205 RYGEDTLSVYREM 217 (546)
Q Consensus 205 g~~~~A~~~~~~m 217 (546)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.6 Score=38.63 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=22.2
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 133 TAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+.|++++|.+.|+.+...- -+-...+--.++-++.+.+++++|+...++.+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555544331 011122333344444445555555555544444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.65 Score=43.83 Aligned_cols=154 Identities=7% Similarity=0.007 Sum_probs=95.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 244 (546)
..|++.+|...++++++. .+.|...+.-.=++|.-.|+.+.-...++++... +++.....-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456667777777777764 4556667777777777777777777777766543 222223333344455567778888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
|++.-++..+.+ +.|...-.++...+--.|++.++.++..+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 888877777665 567777777777777777777777776543321 000011223333334556678888888876
Q ss_pred Hhh
Q 009025 322 RLP 324 (546)
Q Consensus 322 ~m~ 324 (546)
+=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=3.1 Score=38.94 Aligned_cols=122 Identities=10% Similarity=0.022 Sum_probs=60.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 009025 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 244 (546)
.....|++.+|..+|......... +...--.+..+|...|+.+.|..++..+...--........+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566666666666666654221 3344455666666666666666666665533111111222222333344444443
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333331 22555555556666666666666655555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.75 Score=46.65 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
.-.+.++..+-+.|..+.|+++-.+ .. .-.....+.|+++.|.++.++. .+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 3355555555555555555554322 11 1233344555555555443221 2445555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 555555555555554321 3344444455555555555555544444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.14 Score=38.42 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=49.0
Q ss_pred ecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccchhHHHHHHHHhhhcCCCCCC---------CC
Q 009025 443 LHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHD---------SP 513 (546)
Q Consensus 443 ~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~f~~---------~~ 513 (546)
+++|++....|...+..++....+ .+. ..+.|.||.|.|+-.. .+...+...|.+ +..+.. ..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~---~~~---~~~~II~G~G~hS~~g-~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~ 72 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQ---RGI---RELRIITGKGNHSKGG-VLKRAVRRWLEE-GYQYEEVLAYRDAEPED 72 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHH---TTH---SEEEEE--STCTCCTS-HHHHHHHHHHHH-THCCTTEEEEEE--CCC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHH---cCC---CEEEEEeccCCCCCCC-cHHHHHHHHHHh-hhccchhheeeecCCCC
Confidence 367888888888888776655543 332 4688999999999764 499999999988 555554 34
Q ss_pred CCcceEEEe
Q 009025 514 DKVGWFLTT 522 (546)
Q Consensus 514 ~~~G~~~~~ 522 (546)
.|.|.++..
T Consensus 73 g~~G~~~V~ 81 (83)
T PF01713_consen 73 GNSGATIVY 81 (83)
T ss_dssp TGGGEEEEE
T ss_pred CCCeEEEEE
Confidence 578888753
|
It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.7 Score=44.78 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCc-----CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKG-MQL-----SVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSW 263 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (546)
+..++...+=.|+-+.+++.+.+..+.+ +.- -...|..++..++. ....+.|.++++.+... -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555555666666666666554432 110 01234444433333 34566777777777664 34544
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 264 TFS-SMITICSCRGKVSEAEAMFNEMLEA--G-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 264 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~--~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.|. .-.+.+...|++++|.+.|++.... . .+.....+--+.-++.-.++|++|...|.++.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 443 3345566677777777777754421 1 1122334444555666677777777777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.45 Score=46.24 Aligned_cols=78 Identities=14% Similarity=0.018 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 342 (546)
.+++.|...|.+.+++..|++.-++.+..+. .|+-..-.=..+|...|+++.|...|+.+++ +.|+......=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 3455666666666677766666666665443 2555555556666666777777777776665 455554444434333
Q ss_pred h
Q 009025 343 T 343 (546)
Q Consensus 343 ~ 343 (546)
.
T Consensus 335 ~ 335 (397)
T KOG0543|consen 335 K 335 (397)
T ss_pred H
Confidence 3
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.7 Score=42.19 Aligned_cols=159 Identities=11% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009025 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211 (546)
Q Consensus 132 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 211 (546)
-+..+...-+++-++..+. .||..+.-+++. --......+++++|++..+.|-. .+. +.......-
T Consensus 179 WRERnp~aRIkaA~eALei--~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~----~lg-------~s~~~~~~g 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEI--NPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEA----SLG-------KSQFLQHHG 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHH----hhc-------hhhhhhccc
Confidence 3445555555555555553 455433222221 12234467788888877664310 000 000000000
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 212 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
..++.+..+...+-..+-..+..++-+.|+.++|++.|++|.+.....-+......|+.++...+.+.++..++.+..+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11122222222222333344556666788888888888888765321224446677888888888888888888876543
Q ss_pred CCCC-CHHHHHHHH
Q 009025 292 GFEP-NLFVLTSLI 304 (546)
Q Consensus 292 ~~~p-~~~~~~~li 304 (546)
.... -...|+..+
T Consensus 325 ~lpkSAti~YTaAL 338 (539)
T PF04184_consen 325 SLPKSATICYTAAL 338 (539)
T ss_pred cCCchHHHHHHHHH
Confidence 2221 234555543
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.74 E-value=4.9 Score=39.89 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..+..++....+.++..+|.+.+..+...+
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 367777788888888888887777665443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.7 Score=38.43 Aligned_cols=145 Identities=11% Similarity=0.036 Sum_probs=79.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009025 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209 (546)
Q Consensus 130 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 209 (546)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456677777777777776553 223445556667777777777777777766543211112222233444444444444
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+.+.---|...-..|+..+.-.|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444443332 2255666666777777777777776666665543223344445555555554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.48 Score=46.03 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 009025 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 375 (546)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~ 375 (546)
..+++.+.-+|.+.+++.+|+...++.++.+ .+|....-.=..+|...|+ +.|...|+++.+..|.+..+-.-|..+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3466777888889999999999888888753 3455555556777777788 8888888888888888766655555543
Q ss_pred hhhcchHHHHHHHHHhc
Q 009025 376 DIEGDFKKEATELFNSI 392 (546)
Q Consensus 376 ~~~g~~~~~A~~~~~~~ 392 (546)
-+.....+...++|..|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33332333333444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.6 Score=41.80 Aligned_cols=128 Identities=13% Similarity=0.292 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCh
Q 009025 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT--AG----NFDGCLNVYEEMKAIGV---KPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~ 172 (546)
+++.+.+++.+.+.|.+.+..+|-+....... .. ...+|.++|+.|++... .++...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44555666666666666666555543322222 12 23456666666665421 2333444444333 22222
Q ss_pred ----hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCcCHHHHHH
Q 009025 173 ----WQVKTIYKEMTDNGLSPNW--NTYASLLRAYGRARY--GEDTLSVYREMKEKGMQLSVTLYNT 231 (546)
Q Consensus 173 ----~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~ 231 (546)
+.++.+|+.+.+.|+..+. .....++........ ..++.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3445556666655554322 222222222211111 2345555566666665554444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=4.1 Score=40.82 Aligned_cols=158 Identities=11% Similarity=0.122 Sum_probs=97.8
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHHc-CCCcC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 009025 192 NTY--ASLLRAYGRAR-----YGEDTLSVYREMKEK-GMQLS-VTLYNTLLAMCAD---------VGYTDEAFEIFEDMK 253 (546)
Q Consensus 192 ~~~--~~ll~~~~~~g-----~~~~A~~~~~~m~~~-g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 253 (546)
..| ..++.+..... ..+.|+.+|.+.... .+.|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555554422 346778888888721 22333 3344433333221 234557777888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
+.+ +-|......+..+....|+++.|..+|++....+ || ...|......+.-+|+.++|.+.+++..+ ..|..
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~ 405 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR 405 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence 777 6788888888888888888888999998888743 55 44555555566677888888888888654 23433
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHH
Q 009025 333 ---RFCGCLLNVMTQTPKEELGKLVE 355 (546)
Q Consensus 333 ---~t~~~ll~~~~~~g~~~a~~~~~ 355 (546)
.+....++.|...+-+++.+++-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 23333444555555566666543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.36 E-value=5.3 Score=38.68 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=28.4
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 164 (546)
.+.|+.+.|..+++. +|++.- =+..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 11 ~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 11 YEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred HHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 377888887776642 444432 23445556666655 34455544 3343 3444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.35 E-value=2.5 Score=43.49 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHHh----cCCh
Q 009025 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSP-----NWNTYASLLRAYGR----ARYG 207 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~~~~~ll~~~~~----~g~~ 207 (546)
.-..-+|.-+... ++| .+..++...+=.||-+.+++.+.+-.+.+ +.- -.-.|+.++..++. ....
T Consensus 174 ~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3445566666654 233 34457777777788888888887766532 211 11345555555543 4567
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTL-LAMCADVGYTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
+.|.++++.+.++ -|+...|... .+.+...|++++|++.|++...... -......+-.+.-.+.-.+++++|.+.
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8888999988876 4566555443 3566778999999999997654211 122344555666778888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHH-HHHhcCCh-------hHHHHHHHHhhh
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQ-CYGKAQRT-------DDVVRALNRLPE 325 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 325 (546)
|..+.+..- .+...|.-+.. ++...|+. ++|.++|.+...
T Consensus 328 f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999887532 23444544433 34556777 888888887753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.5 Score=44.48 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=104.7
Q ss_pred HHHcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009025 131 YGTAGNFDGCLNVYE--EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 208 (546)
..-.|+++++.++.+ ++.. .+ ...-.+.++.-+-+.|..+.|+++-..-. .-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 334578888777765 2221 12 24557888888999999999988754321 2345667889999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
.|.++.++. .+...|..|.....+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 998766543 2678999999999999999999999998653 567778888899998888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 289 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
..+|- +|....++...|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 76542 455566666778888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.1 Score=36.98 Aligned_cols=226 Identities=14% Similarity=0.106 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 102 VEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.++.+....-... ++||- ..|..-..+|-...++++|...+.+..+- ..-|...|. ..+.++.|.-
T Consensus 9 i~ea~e~~a~t~~~-wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaam 79 (308)
T KOG1585|consen 9 ISEADEMTALTLTR-WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAM 79 (308)
T ss_pred HHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHH
Confidence 44444444433322 45554 34566667888888999998877776532 122322232 2334566777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-- 255 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 255 (546)
+.++|.+.. --+..|+--..+|..+|..+.|-..+++.-+. ..+-++++|+++|++....
T Consensus 80 Lake~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 80 LAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHh
Confidence 777776631 12456777888899999988887777765432 1233455555555543221
Q ss_pred -C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-
Q 009025 256 -E-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELG- 327 (546)
Q Consensus 256 -~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 327 (546)
+ ...--...+..+-+.+.+..++++|...|.+-... .--++ ...|...|-.|....++..|...++.--..+
T Consensus 142 ~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 142 EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 1 00111223444556677777777777666553321 01112 2335556666777788888888888743321
Q ss_pred --CCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 328 --ITPDDRFCGCLLNVMTQTPKEELGKLV 354 (546)
Q Consensus 328 --~~p~~~t~~~ll~~~~~~g~~~a~~~~ 354 (546)
-.-|..+...|+.+|-....+++.++.
T Consensus 222 f~~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 222 FLKSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred ccChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 122446777777777655445555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=4.7 Score=37.03 Aligned_cols=180 Identities=15% Similarity=0.184 Sum_probs=95.9
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 167 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~ 167 (546)
.....-.+.|++++|...|+.+....+ +-...+.-.++-++-+.+++++|+..+++....- -.|| .-|..-|.+++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence 333334499999999999999987521 2245566677888889999999999999987753 2333 34555555544
Q ss_pred hc-------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 168 RA-------KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 168 ~~-------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.- .|...+.+-+..|.+ +|.-|=...-..+|...+..+... =...=..+.+.|.+.|
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~ 181 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRG 181 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 22 222223333322221 111111112222233322222211 0001112345566667
Q ss_pred CHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 241 YTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.+..|..-+++|.+.- +-+ ...+-.+..+|...|..++|.+.-.-+.
T Consensus 182 ~~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7777777777666652 222 2233445556666666666665544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=4.2 Score=42.03 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=110.2
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHH-----HHHHHHhcCChhHHHHHHHH
Q 009025 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNN-----LLDTMGRAKRPWQVKTIYKE 181 (546)
Q Consensus 108 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~-----ll~~~~~~g~~~~a~~~~~~ 181 (546)
-++++.++|-.|+... +...++-.|++.+|.++|.+- |..- -...|+- +..-+...|+.++-..+.++
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3455666676677654 344566677888888887543 2110 0111111 22334444444443333332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH------HHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR------EMKEKGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 182 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~------~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
-.+-- .|..-=.+...++...|+.++|..+.. .+.+.+.+. +..+...+..-+-+...+.-|-++|..|
T Consensus 696 RA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 696 RADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 21100 000011233455666777777776532 122222222 3344555555556677788899999887
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCChhHHHHHHH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF-----------VLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
-+. ..++......+++++|..+-++..+ +.||+. -|.---.+|-++|+..+|..+++
T Consensus 774 gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 774 GDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred ccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 643 3567788889999999998877654 233332 13334457788888888888888
Q ss_pred HhhhC
Q 009025 322 RLPEL 326 (546)
Q Consensus 322 ~m~~~ 326 (546)
++...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 87643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.7 Score=41.12 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=108.2
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 009025 227 TLY--NTLLAMCADVG-----YTDEAFEIFEDMKSSENCQPD-SWTFSSMITICSC---------RGKVSEAEAMFNEML 289 (546)
Q Consensus 227 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 289 (546)
..| ..++.+..... ..+.|+.+|.+........|+ ...|..+...+.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 66666655422 356889999999843322444 4444444333222 234556777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH-
Q 009025 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY- 366 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~- 366 (546)
+.+.. |......+..++...++++.|..+|++... +.||. .+|....-.+...|+ ++|.+.++...+.+|.-..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 76643 777777888878888889999999999887 45765 345555555667788 9999999998888886543
Q ss_pred -HHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 367 -VVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 367 -~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
++...++.|+..+ +++|..++-+-
T Consensus 409 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPNP--LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCc--hhhhHHHHhhc
Confidence 3356666787766 58888876543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=4.5 Score=36.12 Aligned_cols=166 Identities=17% Similarity=0.080 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR- 199 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 199 (546)
..+......+...+++..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444444455444444444321 112233334444444444444444444444444432211 111111111
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcC
Q 009025 200 AYGRARYGEDTLSVYREMKEKGM--QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRG 276 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g 276 (546)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcc
Confidence 34444555555555544433111 0112222222233344444555555554444432 12 2344444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 009025 277 KVSEAEAMFNEMLE 290 (546)
Q Consensus 277 ~~~~A~~~~~~m~~ 290 (546)
+++.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44555554444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.74 E-value=6.8 Score=37.70 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=136.1
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhC--CCccCHHHHHHHHHHHHHcCChHHHHHHHH----HHHHCC-CCCCHHHHHHHHH
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNE--KWRIDPNAFSTLIKLYGTAGNFDGCLNVYE----EMKAIG-VKPNMITYNNLLD 164 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g-~~p~~~~~~~ll~ 164 (546)
.+..| ...+.++|+..+.....+ +..--..+|..+..+.++.|.+++++..-- -..+.. -..-...|..+..
T Consensus 13 g~~Ly-~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 13 GLQLY-QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHhHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 677888888888776653 111123466777788888888887664321 111110 0011234555555
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCcCHHHHHHHHHH
Q 009025 165 TMGRAKRPWQVKTIYKEMTDN-GLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEKG-----MQLSVTLYNTLLAM 235 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~ 235 (546)
++-+.-++.+++.+-..-... |..| --...-++-.++.-.+.++++++.|+...+.- ......++..|-..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 665555666666555444332 2222 11334456677777788999999998776431 11234578888899
Q ss_pred HHhcCCHHHHHHHHHHHHh----CCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKS----SENCQPDSWTFS-----SMITICSCRGKVSEAEAMFNEMLE----AGFEPN-LFVLT 301 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~ 301 (546)
|.+..++++|.-+..+..+ -+. ..-..-|. .|.-++...|.+.+|.+.-++..+ .|-++. ....-
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 9999999998877665433 221 11112232 334466778888888777776543 332221 23445
Q ss_pred HHHHHHHhcCChhHHHHHHHHhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.+.+.|...|+.|.|+.-|++..
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 67778888899999888777653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2 Score=40.76 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=66.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCh
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT----SLIQCYGKAQRT 313 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~ 313 (546)
-.|+..+|-..++++.+.. +.|...+.-.=++|.-.|+.+.-...++++... ..++...|. .+.-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4667777777777777654 567777777777777777777777777776643 123332222 233344566777
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
++|.+.-++..+.+ +.|...-.++...+...|. .++.+++.
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 77777666665432 2244445555555555555 44444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.5 Score=40.50 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMI 269 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li 269 (546)
.|+.-+..| +.|++..|...|...++.... -....+--|..++...|++++|..+|..+.+... .+.-...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555444 345566666666666554211 1123344455666666666666666666555321 011224444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 009025 270 TICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
....+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555566666666666665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.5 Score=45.04 Aligned_cols=176 Identities=14% Similarity=0.149 Sum_probs=89.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
.-|..+.+...++-|+.+-+. .+..++. .......+-+.+.|++++|...|-+-+.. ++| ..+|.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 344555555555555555432 2212221 12222333455667777777666555432 222 134455555
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 283 (546)
..+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|....| ....+..+.+.+-.++|..
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHH
Confidence 55566666667777777665 55556667777777777777666666554 3332222 2334555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
+-.+... +......+ +-..|++++|++.+..|
T Consensus 485 LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4433322 22222222 23345666666665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.2 Score=33.68 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCC
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGK 277 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~ 277 (546)
+...|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+... ... ...|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhCc
Confidence 344455555555555544432 12344555555555555555555555554443321 111 1122222334445555
Q ss_pred HHHHHHHHHHHHHc
Q 009025 278 VSEAEAMFNEMLEA 291 (546)
Q Consensus 278 ~~~A~~~~~~m~~~ 291 (546)
-+.|..=|+..-+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 55555555544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=2.9 Score=33.91 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHh
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNL---FVLTSLIQCYGK 309 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~---~~~~~li~~~~~ 309 (546)
-+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+. |.+ .. ..|..-...|..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 45678899999999999988753 678889999999999999999999999988764 322 22 223333445677
Q ss_pred cCChhHHHHHHHHhhhCC
Q 009025 310 AQRTDDVVRALNRLPELG 327 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~ 327 (546)
.|+-+.|..-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 788888888887776655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.25 E-value=7.6 Score=39.20 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
-..+..++-+.|+.++|++.|++|.+.. ..-+......|+.++...+. .++..++.+-.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3445666667788888888877776532 11123355666676666666 66666665543
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.16 E-value=10 Score=37.83 Aligned_cols=323 Identities=12% Similarity=0.114 Sum_probs=180.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhc
Q 009025 98 RAGNVEMAFGLYDRARNEKWRID------PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT--MGRA 169 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~ 169 (546)
+.+++.+|.++|.++-+.- ..+ ...-+.++++|... +.+.....+....+. .| ...|-.+..+ +.+.
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 7889999999999987652 212 22345677888764 466666666666554 23 3345555554 5678
Q ss_pred CChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcCHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDN--GLSP------------NWNTYASLLRAYGRARYGEDTLSVYREMKEKG----MQLSVTLYNT 231 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~ 231 (546)
++++.|.+.+..-... +..+ |-.--+..++++...|++.++..+++++..+= ...+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999888766554 3222 22233567788899999999999999887653 3478899998
Q ss_pred HHHHHHhcC---------------CHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009025 232 LLAMCADVG---------------YTDEAFEIFEDMKSSEN-----CQPDSWTFSSMITICSCR--GKVSEAEAMFNEML 289 (546)
Q Consensus 232 li~~~~~~g---------------~~~~A~~~~~~m~~~~~-----~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 289 (546)
++-.+++.= .++.+.-+.++|..... +.|-......++.-..-. .+..--.++++.-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 766665431 12333333344432211 122222222332222211 11222233333334
Q ss_pred HcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 009025 290 EAGFEPNLF-VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363 (546)
Q Consensus 290 ~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~ 363 (546)
..-+.|+-. ....|+..+.+ +.+++..+.+.+....+.+= ..+|..++....+.++ .+|.+.+.-+.-.+|.
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 444556532 33455555554 55666666665554322221 2478888888888888 8888888777777776
Q ss_pred hhHHH------HHHHHhhhhhcc---hHHHHHHHHHhcccC-ccc-hhhHHHHH---HHHhcCC-HHHHHHHHHHHHhc
Q 009025 364 LGYVV------KLLLEEQDIEGD---FKKEATELFNSISKD-VKK-AYCNCLID---LCVNLNL-LENACKLLELGLTL 427 (546)
Q Consensus 364 ~~~~~------~~L~~~~~~~g~---~~~~A~~~~~~~~~~-~~~-~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~ 427 (546)
....- ..|-...+..+. .+..-+.+++.+... -|. .....|+. -+++.|. -++|+.+++..++.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 54210 222222221111 122333444444321 121 12233333 3778887 77889999887653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.16 E-value=7.6 Score=41.59 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL----LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
.-|+.+.+...++.|+.+-+. .+. |..+...+ .+-+.+.|++++|...|-+.... ..|. .+|.-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHH
Confidence 345555555555555554432 211 22222222 23334566666666665554432 1221 23444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCH-HH
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~-~~ 349 (546)
|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++.+..- .|.. .|.. ..+..|.+.+- ++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e---~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVE---TALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHH---HHHHHHHHhChHHH
Confidence 55555555556666666666654 55555666666666666666555544433 2221 1222 24444455554 44
Q ss_pred HHHHH
Q 009025 350 LGKLV 354 (546)
Q Consensus 350 a~~~~ 354 (546)
|..+-
T Consensus 482 a~~LA 486 (933)
T KOG2114|consen 482 AELLA 486 (933)
T ss_pred HHHHH
Confidence 44433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.2 Score=41.71 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 455556666666666666666666666654 55666666666666666666666666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.14 E-value=7.3 Score=41.18 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 342 (546)
-+.+--+.-+..-|+..+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-+.+. .+.-|..++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 3444555566677778888777766654 777777777888888888877666555443 134566677788
Q ss_pred hcCCH-HHHHHHHHHH
Q 009025 343 TQTPK-EELGKLVECV 357 (546)
Q Consensus 343 ~~~g~-~~a~~~~~~~ 357 (546)
.+.|+ ++|.+++-..
T Consensus 755 ~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhcccHHHHhhhhhcc
Confidence 88887 8888777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=5.3 Score=34.25 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=64.8
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCC
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN---LLDTMGRAKR 171 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---ll~~~~~~g~ 171 (546)
.++.|..++|+.-|..+.+.|..--+. ..-.+.....+.|+...|...|++.-.....|-..-=.. -.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 346677777777777777665442222 122233445566777777777777655432232210001 1112345566
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
++......+-+-..|-+.-...-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666655555554444333444445555555566666666666666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.8 Score=34.79 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=40.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
..+.|++++|.+.|+.+...-.. +-....-..|+.+|.+.|++++|...+++.++....---+-|-..+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34566666666666666654210 12334455666666777777777777766666443322334444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.97 E-value=8.9 Score=36.72 Aligned_cols=128 Identities=15% Similarity=0.244 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCCC---cCHHHHHHHHHHHHhcCC--
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR--AR----YGEDTLSVYREMKEKGMQ---LSVTLYNTLLAMCADVGY-- 241 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~-- 241 (546)
++...+++.|.+.|+.-+..+|-+..-.... .. ...+|..+|+.|++...- ++...+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666777777776666555543333222 11 234566666666655321 233344444332 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 009025 242 --TDEAFEIFEDMKSSENCQPDSWT-FSSMITICSCRGK--VSEAEAMFNEMLEAGFEPNLFVLTS 302 (546)
Q Consensus 242 --~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ 302 (546)
.++++.+|+.+.+.|..+-|..- ...++..+..... ..++.++++.+.+.|+++....|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 23445555555554432223222 2222222111111 2345555555555555555444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.3 Score=41.48 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-----LGITPDDRFCG 336 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~ 336 (546)
..++..++..+...|+++.+...++++..... -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34677888899999999999999999998754 3889999999999999999999999998864 68888877766
Q ss_pred HHHHH
Q 009025 337 CLLNV 341 (546)
Q Consensus 337 ~ll~~ 341 (546)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.70 E-value=4.7 Score=32.85 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 294 (546)
....+..+..+...|+-|.-.+++.++.+.+ .++......+..+|.+.|+..++.+++.+..+.|+.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445556667777777777777777776544 667777777777777777777777777777776653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.2 Score=39.39 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLI 304 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li 304 (546)
.|+.-+.. .+.|++.+|..-|...++...- .-....+--|...+...|++++|..+|..+.+.-. .| -...+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555443 3455677777777776665310 11122344566666666666666666666665321 11 134555555
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+..+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 566666666666666666654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.45 E-value=12 Score=36.83 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
....+|..+.+.+.+.|.++.|...+.++...+... .....-.-+..+-..|+.++|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666777777777777666666532111 222333334445556666666666666554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.38 E-value=18 Score=38.79 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=34.4
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHC
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-------FDGCLNVYEEMKAI 150 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 150 (546)
=|+.|+|++++|.++....... .......+...+..|....+ -++...-|++....
T Consensus 119 yy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 119 YYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3555999999999999555543 33455667777888876532 23445556655544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.61 Score=29.90 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
..+...|.+.|++++|+++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.11 E-value=12 Score=36.15 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP---DSWTFSSMITICSCRGKVSEAEAMFNEMLEA-----GFEPNLFV 299 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~ 299 (546)
.|-.+.+++.+..++.+++.+-+.-.......+ ......++..+....+.++++++.|+...+- +.-.....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555556666655554433221122 1123344666677777788888888776542 11122346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
+-.|-..|.+..++++|.-+.....
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 7777777888888888776555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.93 E-value=14 Score=36.44 Aligned_cols=231 Identities=12% Similarity=0.101 Sum_probs=120.4
Q ss_pred CCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCcCHH---
Q 009025 154 PNMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR--AYGRARYGEDTLSVYREMKEKGMQLSVT--- 227 (546)
Q Consensus 154 p~~~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~--- 227 (546)
|...+|-.+-. ++.-.|+.++|.++-...++.. ....+..+++ ++--.++.+.|...|++.+..+ |+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 44444443322 2445566666666555554432 1122222222 2333455666666666555442 2211
Q ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 228 ----------LYNTLLAMCADVGYTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 228 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
.+..=..-..+.|++.+|.+.|.+.+.... .+++...|........+.|+.++|+.--++... .
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----i 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----I 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----c
Confidence 122223445678888888888888776431 245566677777778888888888888777776 3
Q ss_pred CHH---HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCChhHHH--
Q 009025 296 NLF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVECVEKS-NSKLGYVV-- 368 (546)
Q Consensus 296 ~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~-~~~~~~~~-- 368 (546)
|.. .|..-..++...++|++|.+-|+...+..-.+ +..++.-...++.+.....-.+++...... .......+
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHH
Confidence 332 23333456667788888888888776533222 334555555555555443333332222111 11111122
Q ss_pred HHHHHhhhhh-cchHHHHHHHHHhccc
Q 009025 369 KLLLEEQDIE-GDFKKEATELFNSISK 394 (546)
Q Consensus 369 ~~L~~~~~~~-g~~~~~A~~~~~~~~~ 394 (546)
-.|.....+. |. ..+|+..|.+...
T Consensus 397 ~AL~~Hpd~~ags-q~eaE~kFkevge 422 (486)
T KOG0550|consen 397 LALVHHPDKNAGS-QKEAEAKFKEVGE 422 (486)
T ss_pred HHHHhCCCcCcch-hHHHHHHHHHHHH
Confidence 2222222222 32 3777878877764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.27 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.092 Sum_probs=22.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
+|+.|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.67 Score=29.71 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
+|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.54 E-value=13 Score=35.35 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=69.2
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHH-------HHHHHcC-ChHHHHHHHHHHHHC--------CCCCCH----
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI-------KLYGTAG-NFDGCLNVYEEMKAI--------GVKPNM---- 156 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li-------~~~~~~g-~~~~A~~~~~~m~~~--------g~~p~~---- 156 (546)
.+.|+++.|..++.+........++.....|. ....+.+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 37889999999998887642122333222222 2223344 777777776665432 112222
Q ss_pred -HHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 157 -ITYNNLLDTMGRAKRPW---QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 157 -~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
.++..++.++...+..+ +|.++++.+.... .-...++-.-+..+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34556666666666544 3445555554432 112445555566666677777777777777764
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.46 E-value=2.8 Score=36.70 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777766543333 23455566666667777776666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.18 E-value=5.9 Score=33.64 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=26.1
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFS-TLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.-.+.++.+++..+++-++-. +|...... .-...+...|+|.+|+.+|+++.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 333555666666666655543 22222111 1122345556666666666665544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.13 E-value=3.9 Score=34.01 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=49.3
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCC--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 166 (546)
......-..+.|++++|.+.|+.+..+- .+-...+.-.|+.+|.+.|++++|+..+++.++....--..-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3333344447888888888888887641 12244566677788888888888888888877763221123444444444
Q ss_pred Hh
Q 009025 167 GR 168 (546)
Q Consensus 167 ~~ 168 (546)
+.
T Consensus 93 ~~ 94 (142)
T PF13512_consen 93 SY 94 (142)
T ss_pred HH
Confidence 33
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.94 E-value=12 Score=34.05 Aligned_cols=23 Identities=22% Similarity=-0.024 Sum_probs=15.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRAR 113 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~ 113 (546)
+....|....++++|...+....
T Consensus 36 kAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 44455556778888887776665
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=15 Score=34.85 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=130.5
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----WQVKTIYKEMTDNGLSPNWNTY 194 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~ 194 (546)
+|.......+.++...|. +++...+..+.. .+|...-...+.++++.|+. +++..++..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 467777777777777774 334444444444 35667777777778887763 4566666666433 3566666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009025 195 ASLLRAYGRARYG-----EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269 (546)
Q Consensus 195 ~~ll~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 269 (546)
...+.++...+.. ..+...+..+... ++..+-...+.++++.++ ++++..+-.+.+ .+|...-...+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHH
Confidence 6666666555421 2233333333322 255566667777777776 456666666665 33444555555
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHH
Q 009025 270 TICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348 (546)
Q Consensus 270 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 348 (546)
.++++.+ +-..+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555543 23455555655554 3566777777777777777 45666555555432 2 234566777777777
Q ss_pred HHHHHHHHHHHcCC
Q 009025 349 ELGKLVECVEKSNS 362 (546)
Q Consensus 349 ~a~~~~~~~~~~~~ 362 (546)
++...+..+.+..+
T Consensus 252 ~a~p~L~~l~~~~~ 265 (280)
T PRK09687 252 TLLPVLDTLLYKFD 265 (280)
T ss_pred hHHHHHHHHHhhCC
Confidence 77777777666444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=21 Score=36.30 Aligned_cols=181 Identities=10% Similarity=0.140 Sum_probs=118.2
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.|-...-+++..++++..+.-...+..+|.+.| -+-..|..++.+|... ..+.-..+++++.+..+. |++.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344555677888888888888888888888875 5777888899988888 557778888888886553 444445555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQL-----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
.-|-+ ++...+..+|.++..+=++. -...|.-++..- ..+.|....+..++........-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 88888888888876552210 112455444321 34566666666666554322445566666777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
...++.+|.+++..+.+.+-+ |...-..+|..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 888888888888877765422 444444444433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.74 E-value=25 Score=37.22 Aligned_cols=180 Identities=15% Similarity=0.147 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKL-----YGTAGNFDGCLNVYEEMKA-------IGVKPNMITYNNLLDTMGR 168 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~ 168 (546)
+...|.+.++.....| +......+..+ +....+.+.|+.+|+.+.+ .| +.....-+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4678888888888775 44444333333 3355789999999999876 44 33355566777766
Q ss_pred cC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH----h
Q 009025 169 AK-----RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA----D 238 (546)
Q Consensus 169 ~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~ 238 (546)
.. +.+.|..++...-+.|. |+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 56778888888888774 454444333333333 24677899999988888743 22222222222 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
..+.+.|..++++.-+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 347788888888888877 3333323333444444 777777777766666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.46 E-value=27 Score=37.18 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
++-|.-.+.+|.+.|+.++|.+.+-+
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhc
Confidence 34555666666666666666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.65 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMK 148 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~ 148 (546)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666777777777777766643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.66 E-value=4.8 Score=35.25 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.+..+.+.|.+.|+.+.|++.|.++.+....+. ...+-.+|......+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555556666666666666666555432221 2334445555555555555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.66 E-value=12 Score=32.11 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 105 A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
-.+.++.+.+.++.|+...|..+++.+.+.|++.... .+...++-+|.......+-.+.. ....+.++=-+|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 3556677777899999999999999999999876554 44555556666555544433332 33444444444444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 185 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
+ + ...+..+++.+...|++-+|+++.+..... +......++.+-.+.++...-..+|+-...
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 0 114667888889999999999998775332 223335567777777776665555555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.44 E-value=32 Score=36.44 Aligned_cols=183 Identities=17% Similarity=0.126 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH--H-HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLD--T-MGRAKRPWQVKTIYKEMTD-------NGLSPNWNTYASLLRAYGRAR- 205 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g- 205 (546)
...|.++++...+.|. ........++. + ++...|.+.|...|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4578888888887652 22222222222 2 3456788999999988877 44 3335566677776643
Q ss_pred ----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCCH
Q 009025 206 ----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD-VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRGKV 278 (546)
Q Consensus 206 ----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~ 278 (546)
+.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-..| .++..-+.+++.... -..+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCH
Confidence 567788888888887743 44433333322222 245788999999988877 344444433333333 34567
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 328 (546)
..|..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888888888877 3332222223333333 777777777766666553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=20 Score=34.10 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----h
Q 009025 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF----DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-----W 173 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-----~ 173 (546)
+.+...+..+... +|...-...+.++++.|+. .++..++..+... .++..+-...+.+++..+.. .
T Consensus 53 ~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~ 127 (280)
T PRK09687 53 QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSP 127 (280)
T ss_pred chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccch
Confidence 3444444444443 4777777788888888864 4678888877443 47777777777777766432 2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDM 252 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 252 (546)
.+...+..... .++..+-...+.++.+.++ ++|+..+-.+.+. +|...-...+.++++.+ ....+...+..+
T Consensus 128 ~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~ 200 (280)
T PRK09687 128 KIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAM 200 (280)
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 23344433333 3467777788888888887 4577777776653 35566666677777654 245677777777
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
.. .++..+-...+.++++.|+. .|...+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||.
T Consensus 201 L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~ 267 (280)
T PRK09687 201 LQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDN 267 (280)
T ss_pred hc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCCh
Confidence 74 56778888899999999984 5666666666532 3 245678889999985 788888888863 3577
Q ss_pred HHHHHHHHHHhc
Q 009025 333 RFCGCLLNVMTQ 344 (546)
Q Consensus 333 ~t~~~ll~~~~~ 344 (546)
.+-...+.+|.+
T Consensus 268 ~v~~~a~~a~~~ 279 (280)
T PRK09687 268 EIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhc
Confidence 777766766653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.68 E-value=6.3 Score=37.15 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 313 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
.++++.++..=+..|+-||..+++.+++.+.+.++ .+|..+.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vv 158 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVV 158 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHH
Confidence 33444444444444555555555555555555444 4444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.53 E-value=48 Score=37.40 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAG--NFDGCLNVYEEMKA 149 (546)
Q Consensus 122 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 149 (546)
.-...+|..|.+.+ ..+.|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44456777888777 66667666666553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.5 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.+|..+..+|...|++++|+..|+++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 368889999999999999999999988764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.41 E-value=25 Score=31.89 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=11.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCC
Q 009025 273 SCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~ 293 (546)
+..+++.+|.++|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666555433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.87 E-value=12 Score=38.65 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 34566666655544322 345566666666666666666666655443 23344455555555544
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
..+-....+.|.. | .-..+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444444432 1 1223345556666666655443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.80 E-value=21 Score=30.39 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=8.1
Q ss_pred HhcCChhHHHHHHHHhh
Q 009025 308 GKAQRTDDVVRALNRLP 324 (546)
Q Consensus 308 ~~~g~~~~A~~~~~~m~ 324 (546)
...|++++|..+|+++.
T Consensus 55 i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELE 71 (160)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 34444444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.73 E-value=16 Score=30.61 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=23.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 98 RAGNVEMAFGLYDRARNEKWR-IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
..++++++..+++.|+-..++ +...++. ...+...|+|++|+.+|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 355555555555555443111 1111222 22244555566666666555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.1 Score=26.91 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCL 141 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~ 141 (546)
++.+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5556666666666666665553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.50 E-value=1.9 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.|..+..+|.+.|++++|++.|++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 57788899999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.45 E-value=34 Score=32.47 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=82.5
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCC-----
Q 009025 132 GTAGNFDGCLNVYEEMKAIG--VKPNM------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN--------GLSPN----- 190 (546)
Q Consensus 132 ~~~g~~~~A~~~~~~m~~~g--~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------g~~p~----- 190 (546)
.+.|+++.|..++.+..... ..|+. ..||.-...+.+..+++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999988876532 23332 23443333333332777776666554332 11222
Q ss_pred HHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGE---DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
..+...++.+|...+..+ +|..+++.+...... ....+-.-+..+.+.++.+++.+++.+|...- ......+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHH
Confidence 235566666776666544 344455555333211 23444445555556777777777777777653 212233333
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 009025 268 MITIC---SCRGKVSEAEAMFNEMLEAGFEPNL 297 (546)
Q Consensus 268 li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 297 (546)
++..+ ... ....|...++.+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 33333 322 233455555555544344333
|
It is also involved in sporulation []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.94 E-value=2.6 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35566666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=84.93 E-value=20 Score=29.38 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
+..-....++.+.+.|+-|.-.+++.++.+. -.++....-.+..+|.+.|+..++.+++.+.-+.|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3455566777888888888888888887643 245777778888888888888888888888887773
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.60 E-value=12 Score=35.51 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 266 (546)
...+...++..-....++++++.++-++... -..++. +-.+.++- +..-+.++++.++..-+.-|+ -||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGi-F~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGI-FPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhcc-ccchhhHH
Confidence 3344444444444455556666555555432 011111 11111221 122344555555555555554 56666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+|+.+.+.+++.+|..+...|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666665555543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.49 E-value=1.3 Score=26.61 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 009025 261 DSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~A 281 (546)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333333344444444433333
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=84.44 E-value=36 Score=31.92 Aligned_cols=26 Identities=23% Similarity=0.005 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
|......+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55666667777777777777766553
|
; PDB: 3LKU_E 2WPV_G. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.66 E-value=2.9 Score=25.90 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKA 149 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 149 (546)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666666666666666666666543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.41 E-value=12 Score=33.09 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCC
Q 009025 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARY 206 (546)
Q Consensus 130 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~ 206 (546)
.+.+.|+ +.|...|-.+...+.--++.....|. .|....|.+++..++.+.++. +-.+|...+.+|...|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455554 67888888888776544555544444 444577889999999888764 336789999999999999999
Q ss_pred hHHHH
Q 009025 207 GEDTL 211 (546)
Q Consensus 207 ~~~A~ 211 (546)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.10 E-value=25 Score=32.87 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHhcCChhHHHHHH
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-------LTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~li~~~~~~g~~~~A~~~~ 320 (546)
.+.+-..+.+++++|...+.++...|+..+..+ ...+...|...|++...-+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344555677788888888888887777655443 334455566666665554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.08 E-value=11 Score=28.96 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
-++.+-++.+....+.|+..+..+.+++|-+.+++..|.++|+..+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.92 E-value=2.5 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3678999999999999999999998763
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.78 E-value=60 Score=33.18 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 232 (546)
..|.....+++..++......-++-+-.+|+..|- +...|-.++.+|... .-++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 35666777899999999888889999999998763 788999999999988 667788999999887654 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 009025 233 LAMCADVGYTDEAFEIFEDMKSSENCQ-----PDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQC 306 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~ 306 (546)
..-|-+ ++...+..+|.++...-+ + .=...|.-|+..- ..+.+....+..++.. .|...-.+.+.-+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 555555 888899999988876532 1 1122454444421 3567777777777664 3555566777888888
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 342 (546)
|....++++|++++..+.+.+ .-|...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 999999999999999887654 22444444444433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.47 E-value=76 Score=34.19 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=84.6
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRI---DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 167 (546)
..+.++.+.+.+++|+++.+..... .+ -...+...|..+...|++++|-...-.|.. -+..-|--.+..+.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhc
Confidence 3456677888999999888766543 33 345778889999999999999888888764 24445555555555
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------------------CCCcCHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------------GMQLSVT 227 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--------------------g~~~~~~ 227 (546)
..++...... -+.......+...|..+|..+.. .+.. .+++...+. .-. +..
T Consensus 435 e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~ 506 (846)
T KOG2066|consen 435 ELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STA 506 (846)
T ss_pred cccccchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chh
Confidence 5444333221 11111111234455555555544 1111 111111110 001 222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.-..|+.-|...+++..|++++-...+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 334477778888888888887766553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.44 E-value=3.7 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.|..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.72 E-value=11 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.64 E-value=1e+02 Score=35.05 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 009025 153 KPNMITYNNLLDTMGRAK--RPWQVKTIYKEMTD 184 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~ 184 (546)
.|+ .-.-.+|.++.+.+ .+++++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 44456777777776 56666666666553
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.42 E-value=7.5 Score=30.06 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
..+-++.+....+.|+..+..+.+++|.+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.72 E-value=0.66 Score=38.98 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=18.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 214 (546)
+.+.++....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33344444444444443332333444444444444444434333333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.12 E-value=17 Score=32.26 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
++|.+.|-.+...+. .+....-..+..|-...+.+++..++.+..+. +-.+|...+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE--LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555555554442 22222222222233344555555555554432 22445555555555555555555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 3e-16
Identities = 30/265 (11%), Positives = 74/265 (27%), Gaps = 6/265 (2%)
Query: 37 SKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKE-KSY 95
+ + + + + P+ + + P+SP +L
Sbjct: 42 QRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQE 101
Query: 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD---GCLNVYEEMKAIGV 152
++++ + + K L V+ +
Sbjct: 102 APGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK 161
Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTL 211
+ YN ++ R ++ + + D GL+P+ +YA+ L+ GR +
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
+M ++G++L LL+ D +A + S P S ++
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEE-DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280
Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPN 296
+ + +
Sbjct: 281 VYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 3e-15
Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 9/273 (3%)
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
SP A LL+ + + + + + C
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 240 GYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
A + + +++++ + +G E + + +AG P+L
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 298 FVLTSLIQCYGKA-QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
+ +QC G+ Q + R L ++ + G+ F LL+ + + K V
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE---DRATVLKAVHK 257
Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL--- 413
V+ + S + + + + + K+ + + +K C L + L
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC 317
Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLK 446
+ + K ++ QW L
Sbjct: 318 VVSVEKPTLPSKEVKHARKTLKTLRDQWEKALC 350
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.9 bits (151), Expect = 2e-10
Identities = 13/165 (7%), Positives = 48/165 (29%)
Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
+ + + G + ++ + + + ++ + Y +++
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
+ R ++ + V +K+ G+ + Y L E + S E +
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
+ + +++ + + P + L++
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 2e-12
Identities = 73/455 (16%), Positives = 142/455 (31%), Gaps = 133/455 (29%)
Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
EE+ I + + ++ L +K+ + + ++ + L N+ S ++ R
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSW 263
+ Y E +++ LYN Y + + ++ + +P
Sbjct: 105 PSMMTRM--YIEQRDR-------LYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 264 TFSSMITICS---CRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
+ I GK + + ++ + +F L + V+
Sbjct: 153 -----VLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEM 201
Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
L +L ++ S S +KL +
Sbjct: 202 LQKL-------------LYQ--------------IDPNWTSRSDHSSNIKLRIH------ 228
Query: 380 DFKKEATELFNSISKDVKKAYCNCLI---DLCVNLNLLE---NACKLLELGLT---LEVY 430
+ E L S K Y NCL+ ++ N +CK+L LT +V
Sbjct: 229 SIQAELRRLLKS------KPYENCLLVLLNVQ-NAKAWNAFNLSCKIL---LTTRFKQVT 278
Query: 431 TDIQSRSPTQWSL--HLKSLSLGAALTALHIWIN----DLSKALESGEEFPPLL------ 478
+ + + T SL H +L+ + L +++ DL + + + P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAE 335
Query: 479 ----GINT-GHGKHKYSDKGLASVFESHLKELNAP-----------FHDS---PDKV--- 516
G+ T + KH DK L ++ ES L L F S P +
Sbjct: 336 SIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 517 GWF---------LTTEAAAKSWLESR--SSLVSVP 540
WF + + S +E + S +S+P
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 79/529 (14%), Positives = 156/529 (29%), Gaps = 163/529 (30%)
Query: 75 KSYIWV------NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKW--------RID 120
+Y ++ + P R N F Y+ +R + + +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 121 PNAFSTLIKLYGTAGNFDG--CL--NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
P + + G G+ G + +V K I + L + P V
Sbjct: 149 PAKN---VLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFW--L--NLKNCNSPETVL 199
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
+ +++ + PNW + + + R + R +K K + N LL +
Sbjct: 200 EMLQKLLYQ-IDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYE------NCLLVL- 250
Query: 237 ADVGYTD--EAFEIFEDMKSSENCQ-----PDSWTFSSMITICSCRGKV---------SE 280
+V AF + +C+ + + + E
Sbjct: 251 LNVQNAKAWNAFNL--------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 281 AEAMFNEMLEAGFE--P------NLFVLTSLIQCYGKAQRTDDVVR-------------- 318
+++ + L+ + P N L S+I ++ R D +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRL-SII---AESIR-DGLATWDNWKHVNCDKLTT 357
Query: 319 ----ALNRLP---------ELGITPDDRFCGCLLNVMTQTPKEELGKL-----VECVEKS 360
+LN L L + P ++ T L + V
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTIL----LSLIWFDVIKSDVMVV 407
Query: 361 NSKLGYVVKLLLEEQ---------DIEGDFKKEA---TELFNSI--SKDVKKAYC-NCLI 405
+KL L+E+Q I + K + L SI ++ K + + LI
Sbjct: 408 VNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 406 DLCVN----------LNLLENACKLLELGLTLEVYTD---IQSR---SPTQWSLHLKSLS 449
++ L +E+ ++ V+ D ++ + T W+ L+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFR---MVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 450 LGAALTAL-----HIWIND--LSKALESGEEFPPLLGINTGHGKHKYSD 491
L L +I ND + + + +F L I KY+D
Sbjct: 523 T---LQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKYTD 566
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 8e-06
Identities = 40/297 (13%), Positives = 95/297 (31%), Gaps = 26/297 (8%)
Query: 101 NVEMAF--GLYDRARNEKWRIDPN-------AFSTLIKLYGTAGNFDGCLNVYEEMKAIG 151
+V+ AF G Y + NE R+ P+ L + Y + L+ +
Sbjct: 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS--- 61
Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL-RAYGRARYGEDT 210
P + + + R + + T+ + Y + +
Sbjct: 62 -APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120
Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
L + ++ LL + D A + + M+ + + ++ ++
Sbjct: 121 LRTLHQGDS--LECMAMTVQILLKL----DRLDLARKELKKMQDQDEDATLTQLATAWVS 174
Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT- 329
+ + K+ +A +F EM + P L +L C+ R + L +
Sbjct: 175 LAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 330 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 386
P+ +L+ P E + + ++ ++ ++ + + E DF +
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY----RAKENDFDRLVL 286
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.53 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.45 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.37 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.89 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.84 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.84 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.69 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.59 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.51 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.4 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.37 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.15 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.67 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.38 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.29 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.22 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.08 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.64 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.44 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.29 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.89 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.51 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.37 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.33 | |
| 3fau_A | 82 | NEDD4-binding protein 2; SMR, small-MUTS related d | 94.29 | |
| 2d9i_A | 96 | NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 | 93.67 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.23 | |
| 2vkc_A | 135 | NEDD4-binding protein 2; human BCL3 binding protei | 92.66 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.12 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.95 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.13 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.02 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.95 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.9 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.69 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.48 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.95 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.69 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.93 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 85.28 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.05 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.98 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.68 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.72 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.01 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=276.05 Aligned_cols=207 Identities=17% Similarity=0.218 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHhCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009025 103 EMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR---------P 172 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~ 172 (546)
..+..+++.+.+.+....+. .++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34566677777777665554 6888999999999999999999999999999999999999999987765 6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
.+.|. .||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 167 ~~~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEV-VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99996 9999999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=274.05 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009025 138 DGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY---------G 207 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~ 207 (546)
..+..+.+++.+.++...+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456677788777766554 46889999999999999999999999999999999999999999988765 6
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
++|.++|++|.+.|+.||..|||+||.+|++.|++++|+++|++|.+.|. .||..||++||.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 345 (546)
|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..+...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=261.31 Aligned_cols=328 Identities=9% Similarity=-0.037 Sum_probs=228.7
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++.+|.+.|
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHh
Confidence 4556667888899999999888854 567788888888888888888888888887543 567778888888888888
Q ss_pred ChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------------
Q 009025 171 RPWQVKTIYKEMTDN---------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM------------- 222 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~------------- 222 (546)
++++|.++|+++... |...+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 888888888743221 2234577888888888888888888888877754331
Q ss_pred ---------------------------------------------------------CcCHHHHHHHHHHHHhcCCHHHH
Q 009025 223 ---------------------------------------------------------QLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 223 ---------------------------------------------------------~~~~~~~~~li~~~~~~g~~~~A 245 (546)
+++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 25778888888889999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+
T Consensus 325 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 325 LAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 98888888765 4456666667777777777777777777666433 23566666666667777777777777766665
Q ss_pred CCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhH
Q 009025 326 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCN 402 (546)
Q Consensus 326 ~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ 402 (546)
.. ..+..+|..++.++.+.|+ ++|.++++.+.+..|.....+..++.+|.+.| ..++|.++|+++.. +.+..+|+
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~ 479 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLN 479 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHH
Confidence 32 1235566666666666666 66666666666666666566666666666666 34666666666532 22445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 403 CLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.++.+|.+.|++++|.++|++|.+.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6666666667777776666666654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=258.69 Aligned_cols=361 Identities=14% Similarity=0.007 Sum_probs=306.3
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------CCCCC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI---------------GVKPN 155 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~ 155 (546)
.....+.+.|++++|+.+|+.+... .++..+++.++.+|.+.|++++|+++|+++... +.+.+
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchh
Confidence 3455667999999999999998654 679999999999999999999999999953221 22345
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------------------------------------------------
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL------------------------------------------------ 187 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~------------------------------------------------ 187 (546)
..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 88999999999999999999999999987542
Q ss_pred ----------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009025 188 ----------------------SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 188 ----------------------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 245 (546)
.++..+++.++.+|.+.|++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++|
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHH
Confidence 156778889999999999999999999999987643 788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+
T Consensus 359 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 359 YLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998765 67899999999999999999999999999987543 3688999999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-------Ccc
Q 009025 326 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-------DVK 397 (546)
Q Consensus 326 ~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-------~~~ 397 (546)
.+ ..+..++..++.+|.+.|+ ++|.++++.+.+..|.....+..++..|.+.| ..++|.++|+++.. .|+
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchh
Confidence 53 3477899999999999999 99999999999999988888899999999999 45999999988732 455
Q ss_pred --chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 398 --KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 398 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
..+|..++.+|.+.|++++|.++|+++.+.+ |+ +...|..+...+.. |...+|...+.+.++
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TN----DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5699999999999999999999999999887 55 23344444444443 666777765544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-23 Score=209.59 Aligned_cols=340 Identities=14% Similarity=0.060 Sum_probs=268.7
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 160 (546)
.|+++.+..+. ...+.+.|++++|...++...+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..+|.
T Consensus 29 ~p~~~~~~~~l-~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 105 (388)
T 1w3b_A 29 EPDNTGVLLLL-SSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYI 105 (388)
T ss_dssp CTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHH
Confidence 45555443333 334457888889988888887753 3477888888999999999999999999888763 33456788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.+..++.+.|++++|.+.|+++.+... .+...+..+...|...|++++|+++|+++.+... -+..+|..+...+...|
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 888888899999999999988887532 2456677788888888999999999988887643 25788888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 320 (546)
++++|+..|+++...+ +.+...|..+...+...|++++|...|++....... +..++..+...|.+.|++++|+..|
T Consensus 184 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888865 566778888888899999999999999888875432 5778888888999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-c
Q 009025 321 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-K 397 (546)
Q Consensus 321 ~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~ 397 (546)
+++.+.+ ..+..++..+..++.+.|+ ++|...++.+.+..|.....+..++..+...|+ .++|...++++.. .| +
T Consensus 261 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 261 RRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTC
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCc
Confidence 9988743 2245678888888888888 999999999888888888888888888888884 5889888888654 23 4
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
..+|..++.+|.+.|++++|...|+++.+.. |+
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~ 371 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PT 371 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC
Confidence 5588889999999999999999999887643 55
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-23 Score=209.21 Aligned_cols=350 Identities=15% Similarity=0.073 Sum_probs=295.7
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 175 (546)
+.+.|++++|+..++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3489999999999999988643 367788888899999999999999999988764 56788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.+.|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.... +...+..+...+...|++++|+++|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999853 235678999999999999999999999999987533 5677888889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHH
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRF 334 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t 334 (546)
. +.+..+|..+...|...|++++|...|+++.+.+.. +...|..+...+...|++++|+..|++..+. .| +..+
T Consensus 165 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 5 567899999999999999999999999999986543 5788999999999999999999999999874 35 4678
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhHHHHHHHHhc
Q 009025 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNL 411 (546)
Q Consensus 335 ~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 411 (546)
+..+..++...|+ ++|...++.+.+.+|.....+..++..+.+.|+ .++|.+.|+++.. +.+..+|+.++..+.+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 8999999999999 999999999999999998889999999999994 5999999988643 33567899999999999
Q ss_pred CCHHHHHHHHHHHHhcccccCccccCccceeeccccc-chhhHHHHHHHHH
Q 009025 412 NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWI 461 (546)
Q Consensus 412 g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~-~~g~~~~a~~~~~ 461 (546)
|++++|...++++.+.. |+.. ..|..+...+ ..|...+|+..+.
T Consensus 319 g~~~~A~~~~~~al~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF--PEFA----AAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp TCHHHHHHHHHHHTTSC--TTCH----HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCcH----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998753 5532 1222222222 2366666665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-21 Score=198.33 Aligned_cols=305 Identities=11% Similarity=0.029 Sum_probs=249.4
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|+.+|+.+.+.. +.+..+|..+..+|...|++++|+..|+++.+.+ +.+..++..+..++.+.|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 34445558999999999999998764 3478899999999999999999999999998875 446788999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCC-H---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPN-W---NTYASL------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~-~---~~~~~l------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
++++|.+.|+++.+.. |+ . ..+..+ ...|.+.|++++|+.+|+++.+... .+..++..+..
T Consensus 109 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 185 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAE 185 (450)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 9999999999998853 44 3 555555 3448889999999999999987643 37888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----------
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL----------- 303 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----------- 303 (546)
+|.+.|++++|+++|+++.... +.+..+|..++..|...|++++|...|+++...... +...+..+
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 667899999999999999999999999999875432 44455444
Q ss_pred -HHHHHhcCChhHHHHHHHHhhhCCCCCC-----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 304 -IQCYGKAQRTDDVVRALNRLPELGITPD-----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 304 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|+ ++|...++.+.+..|+...++..++.++.
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78889999999999999999873 454 3478888889999999 99999999999888888888888899888
Q ss_pred hhcchHHHHHHHHHhccc-Ccc-chhhHHHHH
Q 009025 377 IEGDFKKEATELFNSISK-DVK-KAYCNCLID 406 (546)
Q Consensus 377 ~~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~ 406 (546)
..|+ .++|...|+.... .|+ ...+..+..
T Consensus 341 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 341 IEEM-YDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HTTC-HHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HhcC-HHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 8884 5899998887643 343 446666653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-20 Score=191.37 Aligned_cols=313 Identities=9% Similarity=-0.020 Sum_probs=259.6
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 009025 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187 (546)
Q Consensus 108 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 187 (546)
.|..+.... +.+...+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++++.+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 344444332 3477889999999999999999999999998764 4578899999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHH
Q 009025 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTL------------LAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 188 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m 252 (546)
+.+..++..+..+|.+.|++++|.++|+++.+.... +. ..+..+ ...+...|++++|+.+|+++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346889999999999999999999999999886422 34 556555 44489999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
.... +.+..++..++.+|.+.|++++|.++|+++.+... .+..+|..+...|...|++++|+..|+++.+. .|+.
T Consensus 170 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 244 (450)
T 2y4t_A 170 LEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDH 244 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCh
Confidence 9875 67889999999999999999999999999987543 36899999999999999999999999999864 4544
Q ss_pred -HHHHHH------------HHHHhcCCH-HHHHHHHHHHHHcCCChhH----HHHHHHHhhhhhcchHHHHHHHHHhcc-
Q 009025 333 -RFCGCL------------LNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSIS- 393 (546)
Q Consensus 333 -~t~~~l------------l~~~~~~g~-~~a~~~~~~~~~~~~~~~~----~~~~L~~~~~~~g~~~~~A~~~~~~~~- 393 (546)
..+..+ ..++.+.|+ ++|...++.+.+..|.... .+..++..+.+.|+ .++|...++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 334333 788888999 9999999999998888543 55778888999894 599999998864
Q ss_pred cCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 394 KDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 394 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
..| +..+|..++.+|.+.|++++|...|+++.+.. |+
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~ 361 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--EN 361 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SS
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cc
Confidence 233 56799999999999999999999999998754 65
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-20 Score=190.68 Aligned_cols=359 Identities=12% Similarity=-0.022 Sum_probs=287.1
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|+..|+++.+.. |+..+|..+..+|.+.|++++|+..|+++.+.+ +.+..+|..+..++.+.|+
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhh
Confidence 3344558999999999999999874 799999999999999999999999999999875 4567899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCC--------------------------------------------------------------
Q 009025 172 PWQVKTIYKEMTDNGLSP-------------------------------------------------------------- 189 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p-------------------------------------------------------------- 189 (546)
+++|...|+++...+...
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999999998764210
Q ss_pred ----------------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CcCHHHHHHHHHHHH
Q 009025 190 ----------------NWNTYASLLRAYGR---ARYGEDTLSVYREMKE-----KGM--------QLSVTLYNTLLAMCA 237 (546)
Q Consensus 190 ----------------~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~ 237 (546)
+...+..+...+.. .|++++|+.+|+++.+ ..- +.+..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 12333333333443 8999999999999987 311 224578888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
..|++++|..+|+++.... |+...+..+...|...|++++|...|+++.+... .+...|..+...|...|++++|+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999875 3388899999999999999999999999987643 36778999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-C
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D 395 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~ 395 (546)
..|+++.+... .+...+..+...+...|+ ++|...++.+.+..|.....+..++..+...|+ .++|...++.+.. .
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND-FDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhh
Confidence 99999987532 255788889999999999 999999999999999888888999999999994 5999999987642 1
Q ss_pred c---c----chhhHHHHHHHHh---cCCHHHHHHHHHHHHhcccccCccccCccceeeccccc-chhhHHHHHHHHHHHH
Q 009025 396 V---K----KAYCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWINDL 464 (546)
Q Consensus 396 ~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~-~~g~~~~a~~~~~~~~ 464 (546)
| . ...|..+..+|.. .|++++|...|+++.+.. |+.. ..|......+ ..|...+|...+...+
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSE----QAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccH----HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2 1 2388999999999 999999999999998764 5422 2222222222 2366677765554443
Q ss_pred H
Q 009025 465 S 465 (546)
Q Consensus 465 ~ 465 (546)
+
T Consensus 477 ~ 477 (514)
T 2gw1_A 477 D 477 (514)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-19 Score=183.35 Aligned_cols=331 Identities=12% Similarity=-0.026 Sum_probs=274.5
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----------------
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK---------------- 153 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------- 153 (546)
......+.+.|++++|+..|+.+.+.++ .+..+|..+..+|.+.|++++|+..|+++.+.+..
T Consensus 43 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 43 SNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 3445566699999999999999998753 37789999999999999999999999999776420
Q ss_pred -------------------------------------------------------------C-CHHHHHHHHHHHHh---
Q 009025 154 -------------------------------------------------------------P-NMITYNNLLDTMGR--- 168 (546)
Q Consensus 154 -------------------------------------------------------------p-~~~~~~~ll~~~~~--- 168 (546)
| +...+..+...+..
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp HHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh
Confidence 0 13333333444443
Q ss_pred cCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 169 AKRPWQVKTIYKEMTD-----NGLS--------PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
.|++++|..+|+++.+ ..-. .+..++..+...|...|++++|..+|+++.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 8999999999999988 3111 23567888899999999999999999999987543 8889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
|...|++++|.+.|+++.... +.+..++..+...|...|++++|...|+++.+.... +...+..+...|...|++++
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999875 567889999999999999999999999999986543 57789999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH------HHHHHHHhhhh---hcchHHHH
Q 009025 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY------VVKLLLEEQDI---EGDFKKEA 385 (546)
Q Consensus 316 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~------~~~~L~~~~~~---~g~~~~~A 385 (546)
|+..|+++.+.. ..+..++..+...+...|+ ++|...++.+.+..|.... .+..++..+.. .| ..++|
T Consensus 357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A 434 (514)
T 2gw1_A 357 CETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEA 434 (514)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHH
T ss_pred HHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHH
Confidence 999999998743 2245788889999999999 9999999999887766643 67888888888 88 56999
Q ss_pred HHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 386 TELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 386 ~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
...|+.... .| +..+|..+..+|.+.|++++|...|+++.+..
T Consensus 435 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 435 TNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999988643 33 45688999999999999999999999998765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-17 Score=164.56 Aligned_cols=300 Identities=9% Similarity=-0.025 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..+|.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 33444444444444444444444444332 1233444444444444444444444444444321 113344444444444
Q ss_pred hcCChHHHHHHHHHHHHcCCC--cCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQ--LSVTLYNTL------------LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
+.|++++|...|+++.+.... .+...+..+ ...+...|++++|.++|+++.+.. +.+...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 444444444444444433210 022222222 345555555555555555555443 3445555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHH-----------
Q 009025 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCG----------- 336 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~----------- 336 (546)
...+...|++++|...++++.+... .+...+..+...|...|++++|...|++..+.. |+. ..+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 5555555555555555555554322 244555555555555555555555555555421 221 1111
Q ss_pred -HHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH----HHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHH
Q 009025 337 -CLLNVMTQTPK-EELGKLVECVEKSNSKLGYV----VKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLC 408 (546)
Q Consensus 337 -~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~----~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~ 408 (546)
.+...+.+.|+ ++|...++.+.+..|..... +..++..+...|+ .++|...++.... .| +..+|..+..+|
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-PVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 22444555666 66666666666666554422 2446666666674 4777777776542 33 456888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcccccC
Q 009025 409 VNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 409 ~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.+.|++++|...|+++.+.. |+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~--p~ 338 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN--EN 338 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--TT
T ss_pred HHcCCHHHHHHHHHHHHhcC--CC
Confidence 99999999999999887764 55
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-17 Score=163.44 Aligned_cols=308 Identities=11% Similarity=0.015 Sum_probs=255.2
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|+..|+.+.+... .+..++..+...|...|++++|+..|+++.+.. +-+...|..+..++...|+
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 33445589999999999999988643 378899999999999999999999999998864 3467899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSP----NWNTYASL------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
+++|...|+++.+. .| +...+..+ ...+...|++++|+++++++.+... .+...+..+...
T Consensus 87 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (359)
T 3ieg_A 87 LDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAEC 163 (359)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 99999999999985 34 34444444 5788999999999999999988753 478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT------------SL 303 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~------------~l 303 (546)
+...|++++|...++++.... +.+..++..+...|...|++++|...|++..+.... +...+. .+
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 678899999999999999999999999999876432 334333 23
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCH-----HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDD-----RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 377 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~ 377 (546)
...+.+.|++++|...|+++.+.. |+. ..+..+..++...|+ ++|...++.+.+..|....++..++..+..
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 667899999999999999998743 432 235567788999999 999999999999999988888999999999
Q ss_pred hcchHHHHHHHHHhccc-Ccc-chhhHHHHHHHHh
Q 009025 378 EGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVN 410 (546)
Q Consensus 378 ~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~ 410 (546)
.|+ .++|.+.|+.... .|+ ...+..+..+...
T Consensus 319 ~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 319 EEM-YDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 995 5999999988653 343 4466666655543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-18 Score=179.68 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=70.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|+..|+++.+... .++.+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++...|
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcC
Confidence 334455588999999999999888643 378889999999999999999999999988765 446778888888888889
Q ss_pred ChhHHHHHHH
Q 009025 171 RPWQVKTIYK 180 (546)
Q Consensus 171 ~~~~a~~~~~ 180 (546)
++++|.+.|+
T Consensus 108 ~~~~A~~~~~ 117 (537)
T 3fp2_A 108 NFTDAMFDLS 117 (537)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9888888775
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-17 Score=162.54 Aligned_cols=287 Identities=9% Similarity=-0.044 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44445555555555566666666666655442 2233344445555556666666666666655532 124455555556
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 200 AYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 200 ~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
.|...| ++++|.+.|+++.+.... +...|..+...+...|++++|++.|+++.... +.+...+..+...|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhH
Confidence 666666 566666666665554321 34555566666666666666666666655543 33344555566666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--------CCCCHHHHHHHHHHHhcCCH-HH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG--------ITPDDRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~t~~~ll~~~~~~g~-~~ 349 (546)
++|...|+++.+... .+...+..+...|...|++++|...|+++.+.. ...+..++..+..++...|+ ++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 666666666655432 245555666666666666666666666555321 02223455666666666666 66
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHH-HhcCC
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLC-VNLNL 413 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~-~~~g~ 413 (546)
|...++.+.+..|....++..++..+...|+ .++|.+.|++... .| +...+..+..++ ...|+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGN-FENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhcc-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 6666666666666665666666666666663 3666666666432 22 344555566555 34444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-17 Score=159.57 Aligned_cols=280 Identities=9% Similarity=-0.004 Sum_probs=239.8
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-R 171 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~ 171 (546)
...+...|++++|+.+|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...|..+...+...| +
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhh
Confidence 3344477999999999999988643 366677788899999999999999999998864 346788999999999999 9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
+++|.+.|++..+.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..+...|...|++++|.+.|++
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999864 335788999999999999999999999999887533 467778899999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--------FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 252 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
..... +.+...+..+...|...|++++|...|+++.+.. ...+...|..+...|...|++++|+..|++.
T Consensus 185 al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 185 ALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99876 6778999999999999999999999999988642 1334678999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh-hhhc
Q 009025 324 PELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ-DIEG 379 (546)
Q Consensus 324 ~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~-~~~g 379 (546)
.+.. ..+...+..+..++...|+ ++|...++.+.+..|+....+..++.++ ...|
T Consensus 263 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 263 LVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred HhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 8753 2256788899999999999 9999999999999999888888888776 3444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=191.03 Aligned_cols=170 Identities=13% Similarity=0.156 Sum_probs=134.6
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA---IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 194 (546)
..-..+||+||.+|++.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988864 488999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 195 ASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 195 ~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
|+||+++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.+-++.+.++...+.-.....|...+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999998777654333333332222111111122445556777777
Q ss_pred hcCC---------HHHHHHHHHH
Q 009025 274 CRGK---------VSEAEAMFNE 287 (546)
Q Consensus 274 ~~g~---------~~~A~~~~~~ 287 (546)
+.+. .++-...|++
T Consensus 284 ~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 284 KDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCSCCCCCCCSSCHHHHHHHHHH
T ss_pred cCCCCcCccccCCHHHHHHHHHH
Confidence 6552 3555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=169.87 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=140.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 7789999999999983 3459999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877774 4567889999999999999999998885 267789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 337 (546)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. +.|+ -...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHH
Confidence 25899999999999999999999988 388999999999999999999976555432 3344 3557
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-chHHHHHHHHHhccc-Cc------cchhhHHHHHHH
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELFNSISK-DV------KKAYCNCLIDLC 408 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~~A~~~~~~~~~-~~------~~~~~~~li~~~ 408 (546)
++..|.+.|. +++..+++.....++....+++-|+..|++-. +.+.+.+++|..-.. ++ +...|.-++-.|
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 99999999999998888888888888888763 244566665544222 22 355899999999
Q ss_pred HhcCCHHHHHHHH
Q 009025 409 VNLNLLENACKLL 421 (546)
Q Consensus 409 ~~~g~~~~A~~~~ 421 (546)
.+.++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999987643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-17 Score=161.28 Aligned_cols=287 Identities=11% Similarity=0.017 Sum_probs=141.0
Q ss_pred cCCHHHHHH-HHHHHHhCCC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 99 AGNVEMAFG-LYDRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 99 ~g~~~~A~~-l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.|++++|+. .|+....... ..+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 5554333211 1123345555555666666666666666665543 2344555555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH---------------HHHHHHhc
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT---------------LLAMCADV 239 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~ 239 (546)
|.+.|+++.+.. +.+..++..+..+|...|++++|++.|+++...... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666555542 224555555555666666666666666655554221 1111110 12222244
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
|++++|..+|+++.......++..++..+...|...|++++|...|+++.+... .+...|..+...|...|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555444321001344445555555555555555555555444321 1344444445555555555555555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc--
Q 009025 320 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-- 396 (546)
Q Consensus 320 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-- 396 (546)
|+++ .+..|....++..++..+...|+ .++|...|+.... .|
T Consensus 274 ~~~a----------------------------------l~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 274 YRRA----------------------------------LELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHH----------------------------------HHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC
T ss_pred HHHH----------------------------------HHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 5544 44444444444444555544442 2555555444321 11
Q ss_pred ----------cchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 397 ----------KKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 397 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
...+|..+..+|.+.|+.++|..++++.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1458899999999999999998887754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-17 Score=160.73 Aligned_cols=307 Identities=12% Similarity=-0.017 Sum_probs=181.1
Q ss_pred HHcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 132 GTAGNFDGCLN-VYEEMKAIGV-KP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207 (546)
Q Consensus 132 ~~~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 207 (546)
...|++++|++ .|++...... .| +...+..+...+.+.|++++|...|+++++.. +.+..++..+..+|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34477777777 7765544311 11 23456677777888888888888888887764 33667777788888888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
++|++.|+++.+... .+..++..+...|...|++++|.+.|+++.... +.+...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------
Confidence 888888888777642 367777778888888888888888888877654 2222222111000 00
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 365 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~ 365 (546)
.. .+ ...+. .+..+...|++++|+..|+++.+.... ++..++..+...+...|+ ++|...++.+.+..|...
T Consensus 178 ~~----~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 178 GA----GL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp -------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hh----cc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 00 00 00011 122222555666666666655543211 134555556666666666 666666666666666666
Q ss_pred HHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc-------ccc
Q 009025 366 YVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI-------QSR 436 (546)
Q Consensus 366 ~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~ 436 (546)
..+..++..+...|+ .++|...|++... .| +..+|..+..+|.+.|++++|...|+++.+.. |+. ...
T Consensus 252 ~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~ 328 (368)
T 1fch_A 252 LLWNKLGATLANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCC
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccch
Confidence 666777777777774 5888888887542 33 46689999999999999999999999998654 332 112
Q ss_pred Cccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 437 SPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 437 ~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
....|..+...+.. |....|...+...+.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 24456555555544 555555544444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-17 Score=159.87 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=165.4
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
+.....+.+.|++++|+..|+.+.+... .+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 3444455588888888888888887643 367788888888888888888888888887764 34577888888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPN-----------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCA 237 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~ 237 (546)
|++++|.+.|+++.+.. |+ ...+..+...|.+.|++++|+++|+++.+.... .+..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888887642 21 223344567778888888888888888776422 15677888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
..|++++|++.|+++.+.. +.+..+|..+...|...|++++|...|+++.+... .+...|..+..+|.+.|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888877764 55677888888888888888888888888776532 24677778888888888888888
Q ss_pred HHHHHhhh
Q 009025 318 RALNRLPE 325 (546)
Q Consensus 318 ~~~~~m~~ 325 (546)
..|+++.+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=183.01 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMK---EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 266 (546)
-..|||+||++|++.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|. .||.+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHH
Confidence 35689999999999999999999988776 357888999999999999999999999999999998885 89999999
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC------HHHHHHHH
Q 009025 267 SMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------DRFCGCLL 339 (546)
Q Consensus 267 ~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~t~~~ll 339 (546)
+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999998874 78889999999999999999999888766554 344444444 3344444 34555566
Q ss_pred HHHhcCC
Q 009025 340 NVMTQTP 346 (546)
Q Consensus 340 ~~~~~~g 346 (546)
+.+.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=158.17 Aligned_cols=278 Identities=12% Similarity=-0.032 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998764 4577889999999999999999999999998864 336888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQ---------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
+|.+.|++++|+++|+++.+.... .....+..+...+...|++++|+++|+++........+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998875311 01223344577888889999999999998886521126888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-H
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-E 348 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~ 348 (546)
.|...|++++|.++|+++.+... .+..+|..+..+|.+.|++++|+..|+++.+. .| +..++..+..++...|+ +
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999998887643 36788888888999999999999999888874 34 36678888888888888 8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 349 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
+|...++.+.+..|.....- + . .....+..+|..|..++...|+.+.|..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~----------~-~----------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQ----------Q-V----------PHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCc----------c-c----------chhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888877766544322100 0 0 00001345788889999999998888877665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-16 Score=160.41 Aligned_cols=301 Identities=11% Similarity=0.055 Sum_probs=243.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
....|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.++++++.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45677888899999999999999999999875 4578899999999999999999999999999864 347889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC------------------------------------CcCHH----------------
Q 009025 200 AYGRARYGEDTLSVYREMKEKGM------------------------------------QLSVT---------------- 227 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~------------------------------------~~~~~---------------- 227 (546)
+|.+.|++++|+..|+.+....- .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999964311100 01100
Q ss_pred --------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCCH
Q 009025 228 --------------LYNTLLAMCA--------DVGYTDEAFEIFEDMKSSENCQPD-------SWTFSSMITICSCRGKV 278 (546)
Q Consensus 228 --------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~~li~~~~~~g~~ 278 (546)
....+...+. ..|++++|..+|+++.+.. +.+ ..++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 1111111111 1247899999999998764 333 33577778889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~ 357 (546)
++|...|+++.+.. |+...|..+...|...|++++|+..|+++.+.. ..+..++..+...+...|+ ++|...++.+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999864 568889999999999999999999999998753 2357789999999999999 9999999999
Q ss_pred HHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 358 ~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.+..|.....+..++..+...|+ .++|...++.... .| +...|..+...|.+.|++++|...|+++.+..
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999988888999999999995 5999999988643 23 45689999999999999999999999998766
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.9e-16 Score=149.69 Aligned_cols=258 Identities=8% Similarity=-0.008 Sum_probs=187.0
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
+.....+.+.|++++|+.+|+++.+... .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 3444555689999999999999988643 378889999999999999999999999998864 44778888999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASL--------------LR-AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
|++++|.+.++++.+.... +...+..+ .. .+...|++++|.++++++.+.... +...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 9999999999999886321 22222222 22 366777888888888887766432 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
.|...|++++|.++++++.... +.+..++..+...|...|++++|...|+++.+... .+...|..+...|...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHH
Confidence 8888888888888888877764 55677788888888888888888888888776542 25677777788888888888
Q ss_pred HHHHHHHHhhhCCCCC-----------CHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 315 DVVRALNRLPELGITP-----------DDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
+|...|+++.+..... +..++..+..++...|+ ++|..++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888887776532111 23455555555555555 4444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-15 Score=144.20 Aligned_cols=257 Identities=12% Similarity=0.124 Sum_probs=208.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++..|+..++................+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 67999999999987765422222345667889999999999999877552 25677888999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.++++...+..| +...+..+..+|.+.|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999876545 566777777999999999999999987 3578899999999999999999999999998864
Q ss_pred CCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009025 257 NCQPDSW-T--FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333 (546)
Q Consensus 257 ~~~~~~~-~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 333 (546)
|+.. . ...++..+...|++++|..+|+++.+.. ..+...|+.+..++.+.|++++|...|++..+.. .-+..
T Consensus 161 ---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 161 ---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 4422 1 1233455556699999999999999874 3578899999999999999999999999998743 22567
Q ss_pred HHHHHHHHHhcCCH-HH-HHHHHHHHHHcCCChhHHHH
Q 009025 334 FCGCLLNVMTQTPK-EE-LGKLVECVEKSNSKLGYVVK 369 (546)
Q Consensus 334 t~~~ll~~~~~~g~-~~-a~~~~~~~~~~~~~~~~~~~ 369 (546)
++..++..+...|+ ++ +.++++++.+.+|+...+.+
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 88889999999998 54 67899999999998877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-15 Score=146.76 Aligned_cols=278 Identities=10% Similarity=-0.028 Sum_probs=201.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677788889999999999999998764 3477888899999999999999999999998863 346788899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL--------------LA-MCADVGYTDEAFEIFEDMKSSENCQPDSWT 264 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 264 (546)
.|...|++++|++.++++.+.... +...+..+ .. .+...|++++|.++++++.+.. +.+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHH
Confidence 999999999999999998876422 22223222 22 3667788888888888888765 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 344 (546)
+..+...|...|++++|.++++++.+... .+...|..+...|...|++++|...|+++.+.. ..+..++..+..++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 88888888888888888888888887543 257778888888888888888888888887642 2245667777777777
Q ss_pred CCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 345 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 345 ~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
.|+ ++|.+.++.+.+..|...... + . .....+...|..+..++.+.|+.++|..++++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~----------~-~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPT----------G-E----------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC--------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCcccccc----------c-c----------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777 777777766655444311000 0 0 00000234677777777788888887777765
Q ss_pred HH
Q 009025 424 GL 425 (546)
Q Consensus 424 m~ 425 (546)
.+
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-13 Score=140.85 Aligned_cols=306 Identities=14% Similarity=0.050 Sum_probs=210.2
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 009025 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AK 170 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 170 (546)
.+++++|...|+...+.| ++..+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 678888888888877653 66777777777777 778888888888877754 55666677777776 67
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYT 242 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 242 (546)
++++|.+.|++..+.| +...+..|..+|.. .++.++|++.|++..+.| +...+..+...|.. .+++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 7888888888877765 56667777777776 677888888888777764 56777777777776 7778
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChh
Q 009025 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTD 314 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 314 (546)
++|+++|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.+
T Consensus 204 ~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 204 AISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 88888888777643 45566677777765 677777777777777643 45566666666666 67777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC-----CH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc--chHHHHH
Q 009025 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQT-----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG--DFKKEAT 386 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g--~~~~~A~ 386 (546)
+|+..|++..+.| +...+..+...+... ++ ++|..+++...+.++. .....|+..|...| ...++|.
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA--TAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccHHHHH
Confidence 7777777776543 444555566666554 45 7777777776665432 33445555554432 1346777
Q ss_pred HHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 009025 387 ELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLE 428 (546)
Q Consensus 387 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 428 (546)
+.|++.....+...+..|...|.. .+++++|...|++..+.|
T Consensus 352 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 352 EWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 777666555556667777777776 677777777777776655
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-13 Score=139.64 Aligned_cols=306 Identities=13% Similarity=0.033 Sum_probs=261.9
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 009025 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AK 170 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 170 (546)
.++.++|+..|+...+.| ++..+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999998874 77888889999988 789999999999998875 67788888888887 78
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYT 242 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 242 (546)
+.++|.+.|++..+.| +...+..|..+|.. .++.++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999999875 68889999999988 899999999999999875 67788888888887 8899
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCh
Q 009025 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-----QRT 313 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~ 313 (546)
++|.++|++..+.+ +...+..|...|.. .++.++|..+|++..+.| +...+..+...|... +++
T Consensus 240 ~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 99999999998754 56677888888888 899999999999998754 567788888888887 899
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC---H-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh----hcchHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTP---K-EELGKLVECVEKSNSKLGYVVKLLLEEQDI----EGDFKKEA 385 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~~A 385 (546)
++|+..|++..+.| +...+..+...+...| + ++|.++++...+.+ .......|+..|.. .+ ..++|
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~-~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKK-DEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCC-CHHHH
Confidence 99999999999865 5567777777777766 5 89999999988764 34566778888776 55 45999
Q ss_pred HHHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009025 386 TELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 429 (546)
.+.|++.....+...+..|...|.+ .++.++|...|++..+.+.
T Consensus 387 ~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 387 AIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999988766677889999999998 8999999999999999884
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-15 Score=142.45 Aligned_cols=273 Identities=9% Similarity=0.052 Sum_probs=208.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++.. -.|+..++..+...|...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34456679999999988876543 3443 35566788999999999998766541 3467788888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 206 YGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999998876444 566777777899999999999999986 35778899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 009025 285 FNEMLEAGFEPNLFVL---TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 360 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~ 360 (546)
|+++.+.. |+.... ...+..+...|++++|+.+|+++.+. ...+...++.+..++.+.|+ ++|...++++.+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998864 443211 22334445568999999999999876 34567788889999999999 9999999999999
Q ss_pred CCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCccchhhHHHHHHHHhcCCHHHHHH
Q 009025 361 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACK 419 (546)
Q Consensus 361 ~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 419 (546)
+|+...++..++..+...|+..+.+.++++++. ..|+.. .+.+...+.+.++++..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~---~~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP---FIKEYRAKENDFDRLVL 286 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHH
Confidence 998888888888888888866556778887654 344432 23444555555555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-14 Score=133.40 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPN----WNTYA 195 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~ 195 (546)
..|..+...+...|++++|+.+|+++.+.. .+..+|..+..++...|++++|.+.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555556666666666666655554 4555555556666666666666666655554211 011 35555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 275 (546)
.+...|.+.|++++|++.|+++.+.. |+. ..+...|++++|.+.++++.... +.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHh
Confidence 55566666666666666666655542 221 23444455666666666655543 33445555566666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 276 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
|++++|...|+++.+.... +...|..+...|...|++++|+..|++..+.. ..+...+..+..++...|+ ++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666665554322 45555566666666666666666666655432 1234455555556666665 6666665
Q ss_pred HHHHHcC
Q 009025 355 ECVEKSN 361 (546)
Q Consensus 355 ~~~~~~~ 361 (546)
+...+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 5555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-13 Score=138.04 Aligned_cols=324 Identities=13% Similarity=0.045 Sum_probs=225.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-MGRAKRPWQV 175 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a 175 (546)
.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++... .|+...|...+.. ....|+.+.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence 57899999999999999863 347889999999999999999999999999886 4788787777753 3445666665
Q ss_pred HH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----
Q 009025 176 KT----IYKEMTD-NGLSP-NWNTYASLLRAYGR---------ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC---- 236 (546)
Q Consensus 176 ~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---- 236 (546)
.+ +|++.+. .|..| +...|...+....+ .|++++|..+|++..+.........|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 54 6666654 35443 45667776666554 577888888888776631111112222211100
Q ss_pred ---------HhcCCHH------------------------------------------------------------HHHH
Q 009025 237 ---------ADVGYTD------------------------------------------------------------EAFE 247 (546)
Q Consensus 237 ---------~~~g~~~------------------------------------------------------------~A~~ 247 (546)
.+.++++ ++..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 0011122 4445
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSC-------RGKVS-------EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 313 (546)
+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++
T Consensus 260 ~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 260 AYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 555555542 4456677777777765 68877 8899999888622223588899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCH--HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHh-hhhhcchHHHHHHHH
Q 009025 314 DDVVRALNRLPELGITPDD--RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE-QDIEGDFKKEATELF 389 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~-~~~~g~~~~~A~~~~ 389 (546)
++|..+|+++.+. .|+. ..|..++..+.+.|+ ++|.++|+...+..|.....+...+.. +...| ..++|..+|
T Consensus 338 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~-~~~~A~~~~ 414 (530)
T 2ooe_A 338 EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred HHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC-ChhHHHHHH
Confidence 9999999999874 4542 478888888888888 999999999988776644333222211 22346 458999999
Q ss_pred Hhcc-cCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 390 NSIS-KDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 390 ~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+... ..| +...|..+++.+.+.|+.++|..+|++++..+
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 8653 233 46689999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-14 Score=130.19 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=189.1
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC----HHHHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV--KPN----MITYNNLLDTM 166 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ll~~~ 166 (546)
...+.+.|++++|+..|+.+.+.. .+...|..+..+|...|++++|+..|++..+... .++ ..+|..+...+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 344558999999999999999876 6889999999999999999999999999877521 122 57899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
...|++++|.+.|++..+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...|++++|+
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999985 3453 45667788999999999998864 225678889999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+.|++..... +.+..+|..+...|...|++++|...|++..+... .+...|..+...|.+.|++++|...|++..+
T Consensus 160 ~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 160 KAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999876 56789999999999999999999999999998653 3588899999999999999999999999876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-15 Score=144.05 Aligned_cols=259 Identities=13% Similarity=0.118 Sum_probs=128.4
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .++..+.+.++.+|.+.|
T Consensus 37 ~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 3444555999999999999653 48889999999999999999999988777764 466888999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 9999998884 367789999999999999999999999976 369999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
++ .++.+|..++.+|...|+++.|......+. .+......++..|.+.|++++|+.+++...... +-
T Consensus 173 KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~a 239 (449)
T 1b89_A 173 KA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RA 239 (449)
T ss_dssp HH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TC
T ss_pred Hc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HH
Confidence 88 267999999999999999999966655422 344445679999999999999999999988654 45
Q ss_pred CHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCC-----ChhHHHHHHHHhhhhhcchHHHHHH
Q 009025 331 DDRFCGCLLNVMTQTPK---EELGKLVECVEKSNS-----KLGYVVKLLLEEQDIEGDFKKEATE 387 (546)
Q Consensus 331 ~~~t~~~ll~~~~~~g~---~~a~~~~~~~~~~~~-----~~~~~~~~L~~~~~~~g~~~~~A~~ 387 (546)
....|+-+.-++++-.. .+..+.|..-....+ .....+.-+...|...++. +.|..
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~-d~A~~ 303 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNAII 303 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH-HHHHH
Confidence 66788888888888877 444444432222222 1123445555666666654 54444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=128.53 Aligned_cols=248 Identities=8% Similarity=-0.006 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP--NWNTYASLLR 199 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~ 199 (546)
..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+++..+.+..+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556666777777777777777777653 2234466667777777777777777777777633111 2344677777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.|...|++++|++.|++..+.... +..+|..+...|...|++++|++.|++..+.. +.+...|..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHH
Confidence 777778888888888777765432 55677777788888888888888888777664 556667777773333445888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHhcCCH-H
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELG-ITPD------DRFCGCLLNVMTQTPK-E 348 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~t~~~ll~~~~~~g~-~ 348 (546)
+|.+.|+++.+.... +...+..+...+...|+ +++|...|++..+.. -.|+ ..++..+...+...|+ +
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 888888877765422 35666667777777777 777777777766421 1122 1456667777777777 8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 349 ELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
+|...++++.+.+|+...+...+...
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 88888888887777766665555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=125.61 Aligned_cols=198 Identities=17% Similarity=0.085 Sum_probs=112.0
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++.++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 355566666666666666666666666666553 3355566666666666666666666666666543 22455666666
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 199 RAYGRA-----------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 199 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
.+|.+. |++++|+..|++..+.... +...|..+...|...|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHH
Confidence 666666 6666666666666655322 45566666666666666666666666666543 45556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
+...|...|++++|...|++..+.... +...+..+...+.+.|++++|+..|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666654322 4555666666666666666666666554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-13 Score=136.49 Aligned_cols=326 Identities=13% Similarity=0.010 Sum_probs=210.0
Q ss_pred hhhcCCHHHHHHHHHHHHhC--------CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-C-CCCHHHHH
Q 009025 96 DTRAGNVEMAFGLYDRARNE--------KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-----G-V-KPNMITYN 160 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~-~p~~~~~~ 160 (546)
+...|+.++|++.|++..+. .-.....+|+.+..+|...|++++|...|++..+. + . .....+|.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34789999999999887542 11235678999999999999999999999987642 1 1 12356777
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 161 NLLDTMGRA--KRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 161 ~ll~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
.+..++... +++++|++.|++.++... -+...+..+..+ +...++.++|++.+++..+.... +..++..+...
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHH
Confidence 776666554 568999999999988532 245555555444 44567888899999888876432 56666666655
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 009025 236 CAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA- 310 (546)
Q Consensus 236 ~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~- 310 (546)
+.. .|++++|.+++++..... +.+..++..+...|...|++++|...|++..+.... +...+..+..+|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence 554 457788999999888765 667888899999999999999999999998875432 455565555544321
Q ss_pred ------------------CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH---H
Q 009025 311 ------------------QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV---V 368 (546)
Q Consensus 311 ------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~---~ 368 (546)
+..++|...|++..+.. ..+..++..+...+...|+ ++|...|++.....++.... .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 23456666666665532 1123456667777777777 77888777777766654431 2
Q ss_pred HHHHHhh-hhhcchHHHHHHHHHhc-------------------------cc-CccchhhHHHHHHHHhcCCHHHHHHHH
Q 009025 369 KLLLEEQ-DIEGDFKKEATELFNSI-------------------------SK-DVKKAYCNCLIDLCVNLNLLENACKLL 421 (546)
Q Consensus 369 ~~L~~~~-~~~g~~~~~A~~~~~~~-------------------------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 421 (546)
..++..+ ...| ..++|+..|++. .. +.+..+|+.|..+|...|++++|++.|
T Consensus 375 ~~~~~~~~~~~~-~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 375 LRYGNFQLYQMK-CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2233222 2234 336666655432 11 224568999999999999999999999
Q ss_pred HHHHhcc
Q 009025 422 ELGLTLE 428 (546)
Q Consensus 422 ~~m~~~g 428 (546)
+++++.+
T Consensus 454 ~kALe~~ 460 (472)
T 4g1t_A 454 ERGLESG 460 (472)
T ss_dssp -------
T ss_pred HHHHhcC
Confidence 9998876
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-13 Score=124.98 Aligned_cols=198 Identities=13% Similarity=0.031 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444455555555555555555555432 2244455555555555555555555555555432 124455555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
..|++++|+++|+++.+.+..| +...+..+...|...|++++|.++|+++.... +.+...+..+...|...|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554421122 33445555555555555555555555555443 33455555555555555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+|+++.+... .+...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554322 2444555555555555666666655555554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-13 Score=132.16 Aligned_cols=245 Identities=7% Similarity=0.051 Sum_probs=187.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
+...|+.+...+.+.|++++|+..|+++++.. +-+...|+.+..++...|+ +++|+..|++.++... -+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 34567778888888999999999999998864 3467788888999999996 9999999999988643 3678888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCC
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-RGK 277 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~ 277 (546)
.+|.+.|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998887543 78888889999999999999999999988876 5678888888888888 566
Q ss_pred HHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCC---
Q 009025 278 VSEA-----EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ--RTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTP--- 346 (546)
Q Consensus 278 ~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g--- 346 (546)
.++| +..|++.+..... +...|+.+...+.+.| ++++|++.+.++ + ..| +...+..+..++.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccc
Confidence 5777 4778887775433 5677888888888877 578888888777 3 333 4456666777666653
Q ss_pred ------H-HHHHHHHHHH-HHcCCChhHHHHHHHH
Q 009025 347 ------K-EELGKLVECV-EKSNSKLGYVVKLLLE 373 (546)
Q Consensus 347 ------~-~~a~~~~~~~-~~~~~~~~~~~~~L~~ 373 (546)
. ++|.++++.+ .+.+|....++..++.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 2 5666677776 6666665555544443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-13 Score=120.47 Aligned_cols=210 Identities=8% Similarity=-0.062 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...|..+...+...|++++|++.|+++.+.. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 55677777888888888888888888877653 3456777788888888888888888888877753 236677778888
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 200 AYGRA-RYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 200 ~~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
.|... |++++|+.+++++.+.+..| +...+..+...+...|++++|++.|+++.+.. +.+...+..+...|...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 88888 88888888888877632222 35677777888888888888888888877754 4567778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 335 (546)
+++|..+|+++.+.....+...+..+...+...|+.++|..+++.+.+. .|+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 8888888888776543235666777777777888888888888777653 3544433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-12 Score=121.22 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYA 195 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 195 (546)
++.++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344444445555555555555555555442 233444444455555 555555555555555443 344445
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 196 SLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 196 ~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
.+..+|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 55555555 555555555555555443 44445555555555 555555555555555432 3344444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009025 268 MITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLL 339 (546)
Q Consensus 268 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 339 (546)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4455544 555555555555555432 33444445555555 555555555555555432 133444444
Q ss_pred HHHhc----CCH-HHHHHHHHHHHHcCC
Q 009025 340 NVMTQ----TPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 340 ~~~~~----~g~-~~a~~~~~~~~~~~~ 362 (546)
..+.. .++ ++|.+.++...+.+|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 44444 444 555555555555554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-13 Score=125.25 Aligned_cols=197 Identities=11% Similarity=-0.019 Sum_probs=172.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+...|++++|+..|+++.+.. +.+...+..+...|...|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 44455668999999999999998864 3378899999999999999999999999998874 347889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
++++|.++++++.+.+..| +...+..+..+|.+.|++++|.+.|+++.+... .+...+..+...|...|++++|..+|
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998843344 567888899999999999999999999988753 36888999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
+++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 199 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 199 DLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9998865 6778889999999999999999999999998854
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=124.72 Aligned_cols=195 Identities=14% Similarity=0.085 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+..+|.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 455566666666677777777777777666643 235566666666677777777777777766665322 456666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009025 234 AMCADV-----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302 (546)
Q Consensus 234 ~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 302 (546)
..+... |++++|+..|++..+.. +-+...+..+...|...|++++|...|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 666666 66666666666666543 3455566666666666666666666666666555 45666666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 303 LIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 303 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
+..+|...|++++|+..|++..+. .| +...+..+..++...|+ ++|...++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666666666666553 23 33444555555555555 445444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-12 Score=118.08 Aligned_cols=226 Identities=12% Similarity=0.037 Sum_probs=195.7
Q ss_pred CCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHH
Q 009025 82 PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMI 157 (546)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 157 (546)
|.++.+...... .+.+.|++++|+..|+...+. -+..++..+...|.. .+++++|+..|++..+.+ +..
T Consensus 3 ~~~~~a~~~lg~-~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 3 EQDPKELVGLGA-KSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp --CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCChHHHHHHHH-HHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 455555444443 344889999999999999984 367889999999999 999999999999999875 788
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHH
Q 009025 158 TYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLY 229 (546)
Q Consensus 158 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~ 229 (546)
.+..+...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 89999999999 999999999999999875 78899999999999 999999999999999876 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 230 NTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 230 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 888889988 999999999999998854 56788899999999 999999999999999864 377888
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhhhCC
Q 009025 302 SLIQCYGK----AQRTDDVVRALNRLPELG 327 (546)
Q Consensus 302 ~li~~~~~----~g~~~~A~~~~~~m~~~~ 327 (546)
.+...|.+ .+++++|+..|++..+.|
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88899998 999999999999998765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=9.3e-13 Score=130.22 Aligned_cols=247 Identities=11% Similarity=0.118 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
...|+.+...+.+.|++++|++.+++.++.. +-+..+|+.+..+|.+.|+ +++|+..|+++.+.... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4577888888999999999999999999864 2368899999999999997 99999999999987644 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK-AQRT 313 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~ 313 (546)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++++.... +...|+.+..+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999876 678999999999999999999999999999987654 78899999999998 6666
Q ss_pred hHH-----HHHHHHhhhCCCCC-CHHHHHHHHHHHhcCC--H-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-----
Q 009025 314 DDV-----VRALNRLPELGITP-DDRFCGCLLNVMTQTP--K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----- 379 (546)
Q Consensus 314 ~~A-----~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g--~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g----- 379 (546)
++| +..|++.++. .| +...|..+...+...| + +++...+..+ +.+|+...++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 888 5888888874 45 4567888888888888 4 8888888887 788888888888888887763
Q ss_pred ---chHHHHHHHHHhc--ccCcc-chhhHHHHHHHHh
Q 009025 380 ---DFKKEATELFNSI--SKDVK-KAYCNCLIDLCVN 410 (546)
Q Consensus 380 ---~~~~~A~~~~~~~--~~~~~-~~~~~~li~~~~~ 410 (546)
+..++|.++++.+ ..+|. ...|..+...+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2458899999887 34454 3477766666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=129.34 Aligned_cols=223 Identities=8% Similarity=-0.065 Sum_probs=178.3
Q ss_pred hhcCCHHHHHHHHHHHHhCCC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 97 TRAGNVEMAFGLYDRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
...|++++|+..|+.+.+... +.+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 367899999999999998632 2256788999999999999999999999998874 346889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
+|.+.|+++++.. +.+..++..+..+|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999863 2367889999999999999999999999998864 343344445555677799999999998877
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
... +++...+. ++..+...++.++|...+++..+..... +...|..+...|.+.|++++|...|++..+.
T Consensus 172 ~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 754 44544444 7777788888899999998876532110 1467888888999999999999999998874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-11 Score=129.28 Aligned_cols=330 Identities=11% Similarity=0.077 Sum_probs=233.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH-HHcCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY-GTAGNFDGCLN----VYEEMKAI-GVKP-NMITYNNLL 163 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll 163 (546)
.......+.|++++|..+|+++... .|++..|...+... ...|++++|.+ +|+..... |..| +...|...+
T Consensus 51 ~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~ 128 (530)
T 2ooe_A 51 LYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYI 128 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3344555789999999999999987 46888888777533 45577776655 67666543 4443 456777777
Q ss_pred HHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----------------------------------
Q 009025 164 DTMGR---------AKRPWQVKTIYKEMTDNGLSPNWNTYASLLR----------------------------------- 199 (546)
Q Consensus 164 ~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----------------------------------- 199 (546)
....+ .|+++.|..+|++.++.........|.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~ 208 (530)
T 2ooe_A 129 NFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVM 208 (530)
T ss_dssp HHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 66554 6778888888888776311111122221111
Q ss_pred ------------------------------HHHh----cCCh----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---
Q 009025 200 ------------------------------AYGR----ARYG----EDTLSVYREMKEKGMQLSVTLYNTLLAMCAD--- 238 (546)
Q Consensus 200 ------------------------------~~~~----~g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--- 238 (546)
.... .++. ++|..+|++..... +-+...|..++..+.+
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~ 287 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK 287 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhch
Confidence 0000 0111 24445566555542 2356777777777775
Q ss_pred ----cCCHH-------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 009025 239 ----VGYTD-------EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQ 305 (546)
Q Consensus 239 ----~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~ 305 (546)
.|+++ +|..+|++..+.- .+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++.
T Consensus 288 ~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 288 LLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHH
T ss_pred hhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHH
Confidence 69987 9999999998632 1557889999999999999999999999999985 343 358999999
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-HhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHH
Q 009025 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 383 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 383 (546)
.+.+.|++++|..+|++..+... .+...+...... +...|+ ++|.++|+...+..|+...++..++..+.+.|+ .+
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~-~~ 442 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DN 442 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-HH
T ss_pred HHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC-Hh
Confidence 99999999999999999987421 122333222222 234677 999999999999999888888888888888884 59
Q ss_pred HHHHHHHhcccC----cc--chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 384 EATELFNSISKD----VK--KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 384 ~A~~~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+|..+|++.... |+ ...|...+....+.|+.+.+..+++++.+.-
T Consensus 443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999986432 21 3389999999999999999999999987643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-13 Score=123.96 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=79.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
.+.|++++|+..|+++.+... .+...+..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp --------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHH
Confidence 355555555555555554321 244455555555555555555555555554432 223444444444444455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
+.++++.+.. +.+...+..+...|.+.|++++|+++++++.+... .+...+..+...+...|++++|++.|+++....
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5544444432 12334444444444444444444444444443321 133344444444444444444444444444332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+.+..++..+...|...|++++|.+.|+++.+
T Consensus 190 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 190 --PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp --TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 22333444444444444444444444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-12 Score=117.26 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
+...|..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.++++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45678888899999999999999999998863 34678899999999999999999999999987643 36788999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009025 235 MCADV-GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 235 ~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 313 (546)
.|... |++++|.++|+++...+..+.+...+..+...+...|++++|...|+++.+.... +...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 9999999999999883321334678889999999999999999999999876432 578889999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~ 368 (546)
++|...|+++.+.....+...+..+...+...|+ +++..+++.+.+..|+...+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999998875322456667777777777887 888888888877777665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-13 Score=122.65 Aligned_cols=203 Identities=11% Similarity=0.118 Sum_probs=142.6
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
......|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 4466677888888888888999988888888754 3467788888888888888888888888887753 2367788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
...|...|++++|.++++++.+... .+...+..+...+...|++++|.++++++.... +.+...+..+...|.+.|+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCC
Confidence 8888888888888888888877643 367778888888888888888888888887764 5567788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
+++|...|+++.+... .+...+..+...|...|++++|...|+++.+.
T Consensus 175 ~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888888876543 35677788888888888888888888887763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.4e-12 Score=118.26 Aligned_cols=233 Identities=11% Similarity=-0.026 Sum_probs=143.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMITI 271 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~ 271 (546)
+......+...|++++|+.+|+++.+.... +...+..+...|...|++++|++.|++....+. .+ ...+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHHH
Confidence 344555666666677777776666655322 344566666666677777777777776665321 11 13346666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhcCCHHHH
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEEL 350 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~~~g~~~a 350 (546)
|...|++++|.+.|++..+.... +...|..+...|...|++++|+..|++..+.. .-+...+..+. ..+.....++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776664332 44566677777777777777777777766541 22344555555 34433322777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhhhcch--HHHHHHHHHhcc----cCcc------chhhHHHHHHHHhcCCHHHHH
Q 009025 351 GKLVECVEKSNSKLGYVVKLLLEEQDIEGDF--KKEATELFNSIS----KDVK------KAYCNCLIDLCVNLNLLENAC 418 (546)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~--~~~A~~~~~~~~----~~~~------~~~~~~li~~~~~~g~~~~A~ 418 (546)
...++.+.+..|.....+..++..+...|+. .++|...+++.. ..++ ..+|..+...|.+.|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776665555566665555530 133333333321 1122 247888999999999999999
Q ss_pred HHHHHHHhcccccC
Q 009025 419 KLLELGLTLEVYTD 432 (546)
Q Consensus 419 ~~~~~m~~~g~~p~ 432 (546)
+.|+++.+.. |+
T Consensus 242 ~~~~~al~~~--p~ 253 (272)
T 3u4t_A 242 AAWKNILALD--PT 253 (272)
T ss_dssp HHHHHHHHHC--TT
T ss_pred HHHHHHHhcC--cc
Confidence 9999998765 66
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-13 Score=127.33 Aligned_cols=186 Identities=8% Similarity=-0.075 Sum_probs=104.5
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009025 133 TAGNFDGCLNVYEEMKAIGVK---PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 209 (546)
..|++++|+..|+++.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345666777777766654211 124456666666666666766666666666643 2245666666666666666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
|++.|+++.+... .+..++..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666665432 245566666666666666666666666666542 322233333334455566666666665555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.... ++...+ .++..+...++.++|+..+.+..+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 4321 222222 244445555555666666555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-11 Score=123.21 Aligned_cols=321 Identities=11% Similarity=0.061 Sum_probs=228.7
Q ss_pred CHHHHHHHHHHHHh-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCC
Q 009025 101 NVEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--------GVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 101 ~~~~A~~l~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~ll~~~~~~g~ 171 (546)
.++...+.+....+ .+.......||.|...+...|++++|++.|++..+. .-.....+|+.+..+|...|+
T Consensus 30 ~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 30 SLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp CHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 34444433333322 233445678999999999999999999999987542 112346789999999999999
Q ss_pred hhHHHHHHHHHHHC-----C-CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhc
Q 009025 172 PWQVKTIYKEMTDN-----G-LS-PNWNTYASLLRAYGRA--RYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADV 239 (546)
Q Consensus 172 ~~~a~~~~~~m~~~-----g-~~-p~~~~~~~ll~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~ 239 (546)
+++|...+++..+. + .. ....++..+..++.+. +++++|++.|++..+.... +...+..+..+ +...
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999887652 1 11 2356676666666554 5789999999999887432 45556555544 4556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+++++...... .+...+..+...|...|++++
T Consensus 189 ~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp CCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHH
Confidence 88889999999988765 5677777777666554 4678899999999887654 367889999999999999999
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHhcC-------------------CH-HHHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 316 VVRALNRLPELGITPD-DRFCGCLLNVMTQT-------------------PK-EELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 316 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~-------------------g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
|+..|++..+. .|+ ..++..+..++... +. ++|...++...+.+|.....+..++..
T Consensus 266 A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 266 AIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHH
Confidence 99999999874 454 44555555544321 12 567778888888899888888889999
Q ss_pred hhhhcchHHHHHHHHHhcc-cCccch----hhHHHHHH-HHhcCCHHHHHHHHHHHHhcc
Q 009025 375 QDIEGDFKKEATELFNSIS-KDVKKA----YCNCLIDL-CVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 375 ~~~~g~~~~~A~~~~~~~~-~~~~~~----~~~~li~~-~~~~g~~~~A~~~~~~m~~~g 428 (546)
+...|+ .++|++.|++.. ..++.. .+..+... +.+.|+.++|+..|++.++..
T Consensus 344 ~~~~~~-~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 344 HALADQ-YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHTTC-HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHhcc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999995 599999998753 222221 33444433 457899999999999987654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-11 Score=131.96 Aligned_cols=285 Identities=15% Similarity=0.094 Sum_probs=174.7
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 175 (546)
+...|.+++|..+|++... .....+.++. ..|++++|.+++++. -+..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 3467888888888877521 2222222222 556666666666643 2345666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.+.|.+. -|...|.-++.+|.+.|++++|.++|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 6666442 255566666666666666666666666555443 22222334666666666665433221 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---------
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--------- 326 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------- 326 (546)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|++.+++....
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 1259 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334445555666666666666666666553 24555666666666666665555443211
Q ss_pred ---------------CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-chHHHHHHHH
Q 009025 327 ---------------GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELF 389 (546)
Q Consensus 327 ---------------~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~~A~~~~ 389 (546)
++..+...+..++..|.+.|. ++|..+++.....++....+++-|+..|++-. +.+.++.++|
T Consensus 1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 123355566788888999999 99999999998888877778888887777652 2345555555
Q ss_pred Hhccc-Cc------cchhhHHHHHHHHhcCCHHHHHH
Q 009025 390 NSISK-DV------KKAYCNCLIDLCVNLNLLENACK 419 (546)
Q Consensus 390 ~~~~~-~~------~~~~~~~li~~~~~~g~~~~A~~ 419 (546)
..-.. ++ +...|.-++-.|.+.|+++.|..
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 54322 21 34579999999999999999973
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=131.22 Aligned_cols=279 Identities=12% Similarity=-0.006 Sum_probs=190.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GL-SPN 190 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~ 190 (546)
....+..+...+...|++++|+..|+++.+.+. .+. .+|..+...+...|++++|...+++.++. +. ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 455666777889999999999999999988642 233 47888889999999999999999988653 11 123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEK----G-MQLSVTLYNTLLAMCADVGY-----------------TDEAFEI 248 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 248 (546)
..++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 467788888899999999999999887653 1 11234577888888888898 8888888
Q ss_pred HHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHH
Q 009025 249 FEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 249 ~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
+++.... +.......++..+...|...|++++|...|++..+.... .+ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8876542 110112346777888888888888888888887763111 12 22667777788888888888888
Q ss_pred HHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc
Q 009025 320 LNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393 (546)
Q Consensus 320 ~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~ 393 (546)
|++..+... ..+ ..++..+...+...|+ ++|...++..... .....
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------------~~~~~ 337 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI----------------------------AQELG 337 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------HHHCC
Confidence 877764210 011 2344445555555555 5555444433221 11111
Q ss_pred cC-ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 394 KD-VKKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 394 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.. ....++..+..+|.+.|++++|.+.|++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 11337788999999999999999999998654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=133.00 Aligned_cols=265 Identities=14% Similarity=0.072 Sum_probs=161.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ 161 (546)
.....+.+.|++++|+..|+++.+.+.. + ..+|..+...|...|++++|...|++..+. +-.| ...++..
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3344455778888888888888775322 3 356777778888888888888888776432 1111 2346677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGL-SPN----WNTYASLLRAYGRARY--------------------GEDTLSVYRE 216 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~ 216 (546)
+...+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 77778888888888887777665310 011 3466777777777777 7777777776
Q ss_pred HHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 217 MKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 217 m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
..+. +..+ ...++..+...|...|++++|++.|++......-.++ ..++..+...|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5432 1111 1345667777777778888887777776543110112 23666777777777777777777777
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 288 MLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 288 m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
..+.... .+ ..++..+...|...|++++|...|++..+... ..+ ..++..+...+...|+ ++|...+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542110 11 44566677777777777777777776653210 011 2344445555555555 555554444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-12 Score=129.86 Aligned_cols=210 Identities=5% Similarity=-0.056 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 215 (546)
+++++..+++..... +.+...+..+..++...|++ ++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443321 22444455555555555555 55555555554432 1134455555555555555555555555
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------CCH
Q 009025 216 EMKEKGMQLSVTLYNTLLAMCADV---------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR--------GKV 278 (546)
Q Consensus 216 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------g~~ 278 (546)
+..+.. |+...+..+...|... |++++|++.|++..+.. +.+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 554432 3344455555555555 55555555555555443 33445555555555555 555
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHH
Q 009025 279 SEAEAMFNEMLEAGFE--PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 353 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~ 353 (546)
++|.+.|++..+.... -+...|..+..+|...|++++|+..|++..+.. .-+...+..+..++...|+ ++|...
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555543210 144455555555555555555555555554421 1122344444444444444 444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-11 Score=114.28 Aligned_cols=218 Identities=16% Similarity=0.150 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGT-------AGNF-------DGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 168 (546)
++|..+|+++.... +-++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998753 3378889888888764 5876 8899999999873113356688889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHH
Q 009025 169 AKRPWQVKTIYKEMTDNGLSPN-WN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-DVGYTDEA 245 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A 245 (546)
.|++++|.++|++.++. .|+ .. +|..+...+.+.|++++|.++|++..+... .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999884 343 33 788888888889999999999999887643 24455544433322 36899999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEP--NLFVLTSLIQCYGKAQRTDDVVRALNR 322 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 322 (546)
.++|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887764 4577888888888888999999999999988853 344 467788888888888999999988888
Q ss_pred hhhC
Q 009025 323 LPEL 326 (546)
Q Consensus 323 m~~~ 326 (546)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-11 Score=121.12 Aligned_cols=230 Identities=8% Similarity=-0.052 Sum_probs=125.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSWTFSSM 268 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~l 268 (546)
..+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+++..+...-.+ ...++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555432 1011 123455555555555555555555555443210011 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCC-CHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITP-DDRFCGCL 338 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~l 338 (546)
...|...|++++|...|++..+.... .+ ..++..+...|...|++++|+..|++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 55555556666665555554431000 11 124555555556666666666665555431 1112 23445555
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHc-----CCChhHHHHHHHHhhhhhcc--hHHHHHHHHHhcccCcc-chhhHHHHHHHH
Q 009025 339 LNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATELFNSISKDVK-KAYCNCLIDLCV 409 (546)
Q Consensus 339 l~~~~~~g~-~~a~~~~~~~~~~-----~~~~~~~~~~L~~~~~~~g~--~~~~A~~~~~~~~~~~~-~~~~~~li~~~~ 409 (546)
...+.+.|+ ++|...+++..+. ++.....+..++..+...|+ ..++|..++++....++ ...+..|...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 555666665 6666655555442 22222234556777766663 26888888888755433 347788999999
Q ss_pred hcCCHHHHHHHHHHHHhcc
Q 009025 410 NLNLLENACKLLELGLTLE 428 (546)
Q Consensus 410 ~~g~~~~A~~~~~~m~~~g 428 (546)
+.|++++|...|++..+..
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-10 Score=111.82 Aligned_cols=222 Identities=11% Similarity=0.066 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMG-------RAKRP-------WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
++|+.+|+++.... +-+...|..++..+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998763 457778888887775 35886 8999999999983123366789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVSEA 281 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 281 (546)
.|++++|.++|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985322 333 89999999999999999999999999875 455556655444432 36999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITP--DDRFCGCLLNVMTQTPK-EELGKLVECV 357 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~-~~a~~~~~~~ 357 (546)
.++|++..+... -+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+ +++..+++.+
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999987543 267889999999999999999999999999863 455 35678888888888888 8888888888
Q ss_pred HHcCCCh
Q 009025 358 EKSNSKL 364 (546)
Q Consensus 358 ~~~~~~~ 364 (546)
.+..|+.
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 8877753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-11 Score=106.71 Aligned_cols=166 Identities=18% Similarity=0.154 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
++.+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 55667777777777777777777777776653 23556666777777777777777777777665432 24556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.+...++++.|...+.+...... -+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHH
Confidence 66677777777777776665532 255666666677777777777777777666654 455666666777777777777
Q ss_pred HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLE 290 (546)
Q Consensus 280 ~A~~~~~~m~~ 290 (546)
+|.+.|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=131.43 Aligned_cols=273 Identities=15% Similarity=0.061 Sum_probs=207.2
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GV-KPNMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ 161 (546)
.....+.+.|++++|+..|+++.+.+.. +. ..|..+...|...|++++|+..|++..+. +- .....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4445566899999999999999986433 33 57889999999999999999999988653 11 223467888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDN----GL-SPNWNTYASLLRAYGRARY-----------------GEDTLSVYREMKE 219 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ll~~~~~~g~-----------------~~~A~~~~~~m~~ 219 (546)
+...+...|++++|...+++..+. +- .....++..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999988763 11 1134578888999999999 9999999887654
Q ss_pred c----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 220 K----GM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 220 ~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
. +. .....++..+...|...|++++|++.|++..+...-..+ ..++..+...|...|++++|...|++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11 112457888899999999999999999998754210112 23788999999999999999999998875
Q ss_pred cCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 291 AGFE-P----NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 291 ~~~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
.... . ...++..+...|...|++++|...|++..+... ..+ ..++..+..++...|+ ++|...++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3111 1 146788899999999999999999998875210 011 2467778888888888 888888888776
Q ss_pred cCCCh
Q 009025 360 SNSKL 364 (546)
Q Consensus 360 ~~~~~ 364 (546)
..+..
T Consensus 372 ~~~~~ 376 (411)
T 4a1s_A 372 LAXXX 376 (411)
T ss_dssp HCCHH
T ss_pred HHhhc
Confidence 55543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-11 Score=105.88 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
+..+|..+...+.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56788888889999999999999999888764 236788888888899999999999998888776433 6777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
.+...++++.|.+.+++..... +.+...+..+...|.+.|++++|.+.|++..+.... +...|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8888899999999998888765 567788888888899999999999999888876533 6778888888889999999
Q ss_pred HHHHHHHHhhh
Q 009025 315 DVVRALNRLPE 325 (546)
Q Consensus 315 ~A~~~~~~m~~ 325 (546)
+|+..|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-10 Score=124.47 Aligned_cols=292 Identities=12% Similarity=0.098 Sum_probs=185.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 6677888888777552 5777888888888888888888888553 366677778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
.|...++.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 887766643 23333334677777777666433322 1 224455555666666666666666666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------CCCCCHHHHHHHHHHHHhcCCh
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA------------------------GFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------~~~p~~~~~~~li~~~~~~g~~ 313 (546)
..|..+...|.+.|++++|.+.+++.... ++..+...+..++..|.+.|.+
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence 24666666666666666666655443210 1123555677888899999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCC-----ChhHHHHHHHHhhhhhcchHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK---EELGKLVECVEKSNS-----KLGYVVKLLLEEQDIEGDFKKEA 385 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---~~a~~~~~~~~~~~~-----~~~~~~~~L~~~~~~~g~~~~~A 385 (546)
++|+.+++...... .-....|.-+...+++... .++.++|..-....+ .....+.-+...|.+.|+. +.|
T Consensus 1297 eEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~-dnA 1374 (1630)
T 1xi4_A 1297 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNA 1374 (1630)
T ss_pred HHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH-HHH
Confidence 99999998876533 2234567777777777766 566666665444333 2344566777777777754 666
Q ss_pred HHHH-------------Hh-cccCccchhhHHHHHHHHhcC---------------CHHHHHHHHH
Q 009025 386 TELF-------------NS-ISKDVKKAYCNCLIDLCVNLN---------------LLENACKLLE 422 (546)
Q Consensus 386 ~~~~-------------~~-~~~~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 422 (546)
...+ .. +....+...|.-.+..|...+ +.+++.++|.
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 5221 11 112334556666666666655 7777777776
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-12 Score=126.07 Aligned_cols=281 Identities=11% Similarity=0.025 Sum_probs=186.7
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP 189 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p 189 (546)
......+......+...|++++|+..|+++.+.. +.+ ..+|..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4466677788888899999999999999988763 223 357788888899999999999998887543 2111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCC--------------------HH
Q 009025 190 -NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGY--------------------TD 243 (546)
Q Consensus 190 -~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~ 243 (546)
...++..+...|...|++++|+..+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456777888888899999999988877653110 12 3477778888888888 88
Q ss_pred HHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChh
Q 009025 244 EAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 244 ~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~ 314 (546)
+|.+.+++.... +.......++..+...|...|++++|...|++..+... .++ ...+..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876542 11011234677778888888888888888887764211 112 236677777788888888
Q ss_pred HHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHH
Q 009025 315 DVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388 (546)
Q Consensus 315 ~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~ 388 (546)
+|...|++..+... ..+ ..++..+...+...|+ ++|...++...+.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------------------------- 296 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---------------------------- 296 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----------------------------
Confidence 88888877663210 011 2344455555555555 5555444432221
Q ss_pred HHhcccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 389 FNSISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 389 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.......+ ...++..+..+|.+.|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11111111 1347788889999999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=122.06 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NW 191 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~ 191 (546)
...+......+...|++++|+..|+++.+.. +.+ ...|..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455566777888899999999999988763 223 357778888888899999999888887543 1111 24
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLS----VTLYNTLLAMCADVGY--------------------TDEAF 246 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 246 (546)
.++..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677778888888888888888887664311 012 3367777788888888 88888
Q ss_pred HHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHH
Q 009025 247 EIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 247 ~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~ 317 (546)
+.+++.... +.......++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776532 110112346677777788888888888888877653110 11 225666777777778888887
Q ss_pred HHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 318 RALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 318 ~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
..+++..+... ..+ ..++..+...+...|+ ++|...++..... ...
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----------------------------~~~ 295 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----------------------------AQE 295 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------------------HHh
Confidence 77777653110 011 2234444444445544 4444444332211 111
Q ss_pred cccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 392 ISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 392 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
....+ ...++..+...|.+.|++++|...++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11111 1337788999999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-12 Score=123.20 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=196.2
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLL 163 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll 163 (546)
...+.+.|++++|+..|+++.+.... + ...+..+...|...|++++|++.+++..+. +..+ ...++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34455899999999999999886432 3 467889999999999999999999987543 2111 245788889
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 009025 164 DTMGRAKRPWQVKTIYKEMTDNGL-SPN----WNTYASLLRAYGRARY--------------------GEDTLSVYREMK 218 (546)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~m~ 218 (546)
..+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988765311 112 3478888899999999 999999998765
Q ss_pred Hc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 219 EK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----DSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 219 ~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.. +.. ....++..+...+...|++++|.+.+++..+...-.+ ...++..+...|...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 1245788888999999999999999998765311011 23478889999999999999999999887
Q ss_pred HcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 290 EAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 290 ~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
+.... .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...+...|+ ++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 53111 12 55778889999999999999999998864210 011 2345566666666666 66666666655
Q ss_pred Hc
Q 009025 359 KS 360 (546)
Q Consensus 359 ~~ 360 (546)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-11 Score=121.44 Aligned_cols=313 Identities=11% Similarity=0.022 Sum_probs=165.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF---DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---- 170 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---- 170 (546)
+.|++++|+.+|+...+.| ++..+..|...|...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 5566666666666655543 333444444445555555 5566666555532 3334444444333333
Q ss_pred -ChhHHHHHHHHHHHCCCCC--------------------------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009025 171 -RPWQVKTIYKEMTDNGLSP--------------------------------NWNTYASLLRAYGRARYGEDTLSVYREM 217 (546)
Q Consensus 171 -~~~~a~~~~~~m~~~g~~p--------------------------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m 217 (546)
++++|.+.|++..+.|... +......|...|...+.++++......+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 4555666666555544221 1222333334444444332222221111
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHH
Q 009025 218 KEKGMQLSVTLYNTLLAMCADVG---YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR----GKVSEAEAMFNEMLE 290 (546)
Q Consensus 218 ~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 290 (546)
.+.-...+...+..|...|...| +.++|++.|++..+.| .++...+..|..+|... +++++|.++|++..
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 11111113336667777777777 7777888888777776 56666666677766554 67778888887766
Q ss_pred cCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC----CH-HHHHHHHHHHHHcCC
Q 009025 291 AGFEPNLFVLTSLIQC-Y--GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT----PK-EELGKLVECVEKSNS 362 (546)
Q Consensus 291 ~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~-~~a~~~~~~~~~~~~ 362 (546)
. -+...+..|... | ...+++++|+..|++..+.| +...+..|...|... .+ ++|.++|+... +
T Consensus 245 ~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~ 315 (452)
T 3e4b_A 245 P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---G 315 (452)
T ss_dssp G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---T
T ss_pred C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---C
Confidence 3 244555555555 3 45777888888888777665 555666666666532 14 77777777766 4
Q ss_pred ChhHHHHHHHHhhhhh---cchHHHHHHHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009025 363 KLGYVVKLLLEEQDIE---GDFKKEATELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 363 ~~~~~~~~L~~~~~~~---g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 429 (546)
........|+..|... ....++|...|+......+...+..|...|.. ..+.++|..+|++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4445556666666541 11347777777776665566666677777664 3577788888887777663
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=118.30 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=144.3
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhC-------CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC-CCCH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNE-------KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GV-KPNM 156 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~ 156 (546)
.....+...|++++|+.+|+++.+. .......++..+...|...|++++|+..|+++.+. +- ....
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 3444555888899999888888762 22335567788888888888888888888887654 11 2234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN------GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK------GMQ 223 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~ 223 (546)
.++..+...+...|++++|.+.++++.+. +..| ...++..+...|...|++++|+++|+++.+. +..
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56777888888888888888888887763 1112 3456777778888888888888888877654 112
Q ss_pred c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 224 L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPD-------SWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 224 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
| ...++..+...|...|++++|.++|+++.... ...+. ...+..+...+...+.+.++...+....
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 2 34567777788888888888888888876521 00111 1112222333344445555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
... ..+..++..+..+|.+.|++++|...|++..+
T Consensus 272 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 272 VDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 321 12345667777777777777777777777654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=125.20 Aligned_cols=280 Identities=15% Similarity=0.081 Sum_probs=176.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP---WQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.+...+.+.|++++|+++|++..+.| +...+..|...+...|+. ++|.+.|++..+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998876 334455666777778888 8999999998864 5566677777555
Q ss_pred hcC-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-----------------------------------cCC-
Q 009025 203 RAR-----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD-----------------------------------VGY- 241 (546)
Q Consensus 203 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-----------------------------------~g~- 241 (546)
..+ +.++|++.|++..+.|... .+..|...|.. .+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 555 7789999999988876432 33333333333 332
Q ss_pred ---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C
Q 009025 242 ---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----Q 311 (546)
Q Consensus 242 ---~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g 311 (546)
.+++..+++.... + .|+ .+..|...|...| +.++|.+.|++..+.|. ++...+..|...|... +
T Consensus 158 ~~~~~~a~~~~~~a~~-~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 158 DQHLDDVERICKAALN-T--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGHHHHHHHHHHHTT-T--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSC
T ss_pred ccCHHHHHHHHHHHHc-C--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCC
Confidence 2333333333332 2 233 7788888888889 88999999999888774 3566556677777554 7
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-H--hcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc----chHH
Q 009025 312 RTDDVVRALNRLPELGITPDDRFCGCLLNV-M--TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKK 383 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g----~~~~ 383 (546)
++++|+..|++.. .| +...+..+... + ...++ ++|.+++++..+.+ .......|+.+|. .| ...+
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 8999999999887 32 44455555555 3 34555 99999999887665 3445566777766 33 1458
Q ss_pred HHHHHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009025 384 EATELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 429 (546)
+|...|++.. ..+...+..|...|.. ..+.++|..+|++..+.|.
T Consensus 305 ~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 305 AAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999998887 6677788888887776 3489999999999887763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-11 Score=121.52 Aligned_cols=212 Identities=7% Similarity=-0.080 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++++.+.+++..... +.+...+..+..+|...|++ ++|++.|++..+.... +...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777766543 34788999999999999999 9999999999887533 68899999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCh
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCR---------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA--------QRT 313 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~ 313 (546)
+..+. .|+...+..+...|... |++++|.+.|++..+.... +...|..+..+|... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 99986 46788999999999999 9999999999999986543 688899999999988 999
Q ss_pred hHHHHHHHHhhhCCCCC----CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHH
Q 009025 314 DDVVRALNRLPELGITP----DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~ 388 (546)
++|+..|++..+. .| +...+..+..++...|+ ++|...+++..+.+|+....+..++..+...| ..++|.+.
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg-~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS-RLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999874 35 67889999999999999 99999999999999998888888888888777 45788776
Q ss_pred HHhc
Q 009025 389 FNSI 392 (546)
Q Consensus 389 ~~~~ 392 (546)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-10 Score=113.52 Aligned_cols=227 Identities=9% Similarity=-0.019 Sum_probs=132.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-Cc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGM-QL----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSWTFSSM 268 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~l 268 (546)
..+...|++++|+..|++..+... .+ ...++..+...|...|++++|...+++......-.+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666666553210 01 134555566666666666666666665543210011 13355566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE-----LGITPDDRFCGCL 338 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~l 338 (546)
...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|+..|++..+ .. .....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 66666666666666666665532 1000 123455566666666666666666666654 21 1124456666
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHc-----CCChhHHHHHHHHhhhhhcc--hHHHHHHHHHhcccCcc-chhhHHHHHHHH
Q 009025 339 LNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATELFNSISKDVK-KAYCNCLIDLCV 409 (546)
Q Consensus 339 l~~~~~~g~-~~a~~~~~~~~~~-----~~~~~~~~~~L~~~~~~~g~--~~~~A~~~~~~~~~~~~-~~~~~~li~~~~ 409 (546)
...+.+.|+ ++|...+++..+. ++.....+..+...+...++ ..++|...++.....++ ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 666666666 6666666666553 23333344556556555552 25788888887554333 336778999999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 009025 410 NLNLLENACKLLELGLT 426 (546)
Q Consensus 410 ~~g~~~~A~~~~~~m~~ 426 (546)
+.|++++|...|+++.+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=115.59 Aligned_cols=197 Identities=15% Similarity=0.102 Sum_probs=132.9
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhC------C-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHH
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNE------K-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GVKP-NMI 157 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~ 157 (546)
....+...|++++|+..|+++... + ......++..+...|...|++++|+..|+++.+. +-.| ...
T Consensus 75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 334455789999999999988763 1 1234567888889999999999999999988764 2122 345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CC
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN------GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKG-------MQ 223 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-------~~ 223 (546)
++..+...+...|++++|.++++++.+. +..| ...++..+..+|.+.|++++|.+.|+++.+.. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6788888899999999999999988764 2122 34578888899999999999999999887531 11
Q ss_pred c-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 224 L-------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 224 ~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+ ....+..+...+...+.+.++...++...... +.+..++..+...|.+.|++++|.++|++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11223333444455566667777777766543 44667788899999999999999999988775
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-10 Score=113.79 Aligned_cols=295 Identities=9% Similarity=-0.023 Sum_probs=203.7
Q ss_pred chhhhcCCHHHHHHHHHHHHhC--CCccC--HHHHHHHHHHH--HHcCChHHHH-----------HHHHHHHHCCCCCCH
Q 009025 94 SYDTRAGNVEMAFGLYDRARNE--KWRID--PNAFSTLIKLY--GTAGNFDGCL-----------NVYEEMKAIGVKPNM 156 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~--g~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~p~~ 156 (546)
-.+.+.+++++|..+++++.+. ....| ...|-.++..- ...++++.+. ++++.+.... .+.
T Consensus 20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~ 97 (383)
T 3ulq_A 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARL 97 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCc
Confidence 3445899999999999998763 22233 33444444321 2223444444 6666665421 111
Q ss_pred H------HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-
Q 009025 157 I------TYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKG--M- 222 (546)
Q Consensus 157 ~------~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~- 222 (546)
. .+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|+..+++..+.- .
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 1 1223556678899999999999999874 1111 24678899999999999999999999887531 1
Q ss_pred ---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 009025 223 ---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA---- 291 (546)
Q Consensus 223 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 291 (546)
.....+++.+...|...|++++|++.|++..+...-..+ ..++..+...|...|++++|.+.|++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 112467888999999999999999999987753210112 347889999999999999999999998862
Q ss_pred CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC---CCC-HHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCC
Q 009025 292 GF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI---TPD-DRFCGCLLNVMTQTPK----EELGKLVECVEKSNS 362 (546)
Q Consensus 292 ~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~t~~~ll~~~~~~g~----~~a~~~~~~~~~~~~ 362 (546)
+. .....++..+...|.+.|++++|...|++..+... .|. ...+..+...+...|+ ++|..+++.. ...+
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 22 23467789999999999999999999998875210 111 2335667777778774 5555555544 2222
Q ss_pred ChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 363 KLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 363 ~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
....+...++..|...|+ .++|.+.++..
T Consensus 337 ~~~~~~~~la~~y~~~g~-~~~A~~~~~~a 365 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKN-FQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
Confidence 333456788999999995 49999888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-10 Score=99.07 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555556666666666666666655442 2345555556666666666666666666655542 22445555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++++.... +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 55566666666665555442 2244555555555555555555555555555443 33445555555555555555555
Q ss_pred HHHHHHHHH
Q 009025 282 EAMFNEMLE 290 (546)
Q Consensus 282 ~~~~~~m~~ 290 (546)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-09 Score=104.90 Aligned_cols=274 Identities=8% Similarity=-0.065 Sum_probs=166.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPN----WNTYAS 196 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ 196 (546)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566788888888887776653222222 455666677777888888887777654210 012 233566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C-CCHHHHH
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEK----GMQ--L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--Q-PDSWTFS 266 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~-~~~~~~~ 266 (546)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++......- . ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 677788888888888888876642 211 2 2345666777888888888888888887653210 1 1235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHhcCChhHHHHHHHHhhhCCCCCC---HHHHHH
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLT-----SLIQCYGKAQRTDDVVRALNRLPELGITPD---DRFCGC 337 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ 337 (546)
.+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++..+....+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 788888888999999998888765321111 11121 233447788999999999888875332111 223455
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccc-hhhHHHHHHHHhcCCHH
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK-AYCNCLIDLCVNLNLLE 415 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~ 415 (546)
+...+...|+ ++|...++...... .......+. ..+..+..++...|+.+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENA----------------------------RSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 5566666666 66666555433211 111100111 24555667777888888
Q ss_pred HHHHHHHHHHhc
Q 009025 416 NACKLLELGLTL 427 (546)
Q Consensus 416 ~A~~~~~~m~~~ 427 (546)
+|...+++....
T Consensus 311 ~A~~~l~~al~~ 322 (373)
T 1hz4_A 311 DAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777644
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-10 Score=98.00 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 236 (546)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.++++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677788888899999999888887653 3467788888888888999999999998887764 33677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316 (546)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 316 (546)
...|++++|.++|+++.... +.+...+..+...+...|++++|..+|+++.+... .+...+..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 88899999999998888765 56778888888888888999999998888887643 3577888888888888888888
Q ss_pred HHHHHHhhh
Q 009025 317 VRALNRLPE 325 (546)
Q Consensus 317 ~~~~~~m~~ 325 (546)
...+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-10 Score=120.72 Aligned_cols=166 Identities=10% Similarity=0.132 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
++.+|+.|..+|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|++.|++.++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56788899999999999999999999988764 3357788889999999999999999999988853 235788899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. +-+...|..+...|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998876433 67889999999999999999999999988865 557888899999999999999
Q ss_pred HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLE 290 (546)
Q Consensus 280 ~A~~~~~~m~~ 290 (546)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-10 Score=119.43 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
+..+|+.|..++.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 35689999999999999999999999999863 236889999999999999999999999999987533 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
+|.+.|++++|++.|++..+.. +-+...|..+...|...|++++|++.|++.++.... +...|..+..+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999875 567899999999999999999999999999986533 5788999999999999999
Q ss_pred HHHHHHHHhhh
Q 009025 315 DVVRALNRLPE 325 (546)
Q Consensus 315 ~A~~~~~~m~~ 325 (546)
+|.+.|++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-09 Score=97.33 Aligned_cols=202 Identities=13% Similarity=0.066 Sum_probs=140.3
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.|+..+..+...+.+.|++++|+..|++..+....++...+..+..++...|++++|.+.+++.++... .+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 356777778888888888888888888887765336777777788888888888888888888887532 2566778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMI 269 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li 269 (546)
.+|.+.|++++|++.|++..+.... +. ..|..+...+...|++++|++.|++..+.. +. +...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 8888888888888888888776322 34 457777778888888888888888888753 33 356677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009025 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 334 (546)
..|...|+ .+++++...+. .+...|.... ....+.+++|+..|++..+. .|+...
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 77755443 34455444322 2344444333 23346678888888888873 455443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-09 Score=105.17 Aligned_cols=265 Identities=12% Similarity=-0.049 Sum_probs=186.0
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPN----AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM----ITYNNLLDT 165 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~ 165 (546)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... ..+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4447899999999999988754333332 567777888999999999999998865310 1222 346677888
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cCHHHHHHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDN----GLS--P-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ----LSVTLYNTLLA 234 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~ 234 (546)
+...|++++|...+++..+. +.. | ....+..+...|...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999888653 222 2 2456677888999999999999999988764221 12467888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPD-SWTFS----SMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQC 306 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~ 306 (546)
.+...|++++|...+++.........+ ..... ..+..+...|++++|..++++.......+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999999998754210111 11111 23445789999999999999887543221 13356778889
Q ss_pred HHhcCChhHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 307 YGKAQRTDDVVRALNRLPEL----GITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~----~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
+...|++++|...+++..+. |..++. .++..+..++...|+ ++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999987642 211122 244455556666666 666666665443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-09 Score=97.41 Aligned_cols=208 Identities=9% Similarity=-0.023 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
.|...+......+...|++++|...|++.++....++...+..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668888899999999999999999999998754367888888999999999999999999999987533 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDS-------WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSL 303 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 303 (546)
..|...|++++|++.|++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999998865 4455 56888889999999999999999999874 455 4567777
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
..+|...| ..+++++...+ ..+...|..... ...+. ++|...+++..+..|+...+...+...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77776544 34455555432 223444443332 23344 899999999999999988877777654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=108.49 Aligned_cols=224 Identities=12% Similarity=0.074 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChh
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GVKP-NMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~ 173 (546)
.+++|+++++.+..........++..+...|...|++++|+..|+++.+. +-.| ...++..+...+...|+++
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 35566666665554333445778899999999999999999999998754 2122 3557888999999999999
Q ss_pred HHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCcCHHHHHHHHHHHHhc
Q 009025 174 QVKTIYKEMTDN------GL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------G-MQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 174 ~a~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~ 239 (546)
+|.+.+++..+. .. +....++..+...|...|++++|+.+|+++.+. + .+....++..+...|...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 999999988764 11 223567888888999999999999999988764 1 122356788888899999
Q ss_pred CCHHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHH
Q 009025 240 GYTDEAFEIFEDMKSS-------ENCQPDSWTFSSMITICSCRGKVSEAEA------MFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
|++++|.++|++.... .........|..+...+...+....+.. .++.... .......++..+...
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGAL 261 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 9999999999888753 1102223334444444443333322222 2211110 011124567778888
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
|...|++++|..+|++..+
T Consensus 262 ~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=107.95 Aligned_cols=198 Identities=15% Similarity=0.095 Sum_probs=139.6
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhC------C-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------C-CCCCH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNE------K-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------G-VKPNM 156 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~p~~ 156 (546)
.....+...|++++|+..|+++.+. + ......++..+...|...|++++|++.|++..+. . .+...
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3445556899999999999998764 2 1234568899999999999999999999998764 1 12235
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CC
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN------GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK-------GM 222 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~ 222 (546)
.+|..+...+...|++++|...+++..+. +..| ...++..+..+|.+.|++++|..+|++..+. ..
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 68888999999999999999999999875 1122 3567889999999999999999999998763 11
Q ss_pred Cc-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 223 QL-SVTLYNTLLAMCADVGY------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 223 ~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+ ....|..+...+...+. +..+...++...... +....++..+...|...|++++|..+|++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 22333333333333333 333333333332211 23456788899999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-09 Score=106.04 Aligned_cols=224 Identities=9% Similarity=0.006 Sum_probs=103.0
Q ss_pred hhcCCHHHHHHHHHHHHhCCC-cc----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--C---CC-CHHHHHHHHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKW-RI----DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--V---KP-NMITYNNLLDT 165 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~~~~~ll~~ 165 (546)
...|++++|+..|+.+.+.-. .+ ...++..+...|...|+++.|+..+++..+.. . .+ ...+++.+..+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 355666666666665544210 01 13345555555666666666665555554320 0 00 12345555555
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHHHHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYNTLLAM 235 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li~~ 235 (546)
+...|++++|.+.|++.++. +..+ ...++..+..+|...|++++|++.|++..+ .. +....++..+...
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~ 270 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHH
Confidence 55566666665555554431 1000 123444555555555555555555555544 21 1124445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENC---QPDSWTFSSMITICSCRGK---VSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYG 308 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 308 (546)
|.+.|++++|...+++......- +.....+..+...|...|+ +.+|..++++. +..++ ...+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHH
Confidence 55555555555555554432110 1112233344444444444 44444444431 11111 223344555555
Q ss_pred hcCChhHHHHHHHHhh
Q 009025 309 KAQRTDDVVRALNRLP 324 (546)
Q Consensus 309 ~~g~~~~A~~~~~~m~ 324 (546)
..|++++|...|++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-09 Score=101.29 Aligned_cols=160 Identities=13% Similarity=-0.041 Sum_probs=73.5
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHH
Q 009025 130 LYGTAGNFDGCLNVYEEMKAI----GVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----WNTYASLLR 199 (546)
Q Consensus 130 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~ 199 (546)
.|...|++++|++.|++..+. |-.++ ..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666655432 21111 345556666666666666666666555432100 01 234444555
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH-----HHHHHH
Q 009025 200 AYGRA-RYGEDTLSVYREMKEKGMQL-S----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS-----WTFSSM 268 (546)
Q Consensus 200 ~~~~~-g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~l 268 (546)
+|... |++++|+..|++..+..... + ..+++.+...|.+.|++++|+..|++......-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555444321000 0 2234444555555555555555555544432101110 133444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~ 289 (546)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-09 Score=101.63 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=146.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSPN-WNTYASLLRAYGRARYGEDT 210 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A 210 (546)
++++|.+.|++. ...+...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577889999999999887653 32111 46888999999999999999
Q ss_pred HHHHHHHHHc----CCCc-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 009025 211 LSVYREMKEK----GMQL-SVTLYNTLLAMCADV-GYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 211 ~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 280 (546)
+..|++..+. |-.. -..+++.+...|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887653 2110 135788888899986 9999999999987763210111 3568888999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------HHHHHHHHHh--cCC
Q 009025 281 AEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------FCGCLLNVMT--QTP 346 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------t~~~ll~~~~--~~g 346 (546)
|...|++..+....... ..|..+..++...|++++|+..|++..+ +.|+.. .+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999998875433222 2567778888899999999999999876 334321 2334444553 223
Q ss_pred H-HHHHHHHHHHHHcCCCh
Q 009025 347 K-EELGKLVECVEKSNSKL 364 (546)
Q Consensus 347 ~-~~a~~~~~~~~~~~~~~ 364 (546)
. ++|.+.|+.+.+.+|..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 3 55555555554444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-08 Score=83.55 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
+..+...|...|++++|.++|+++.+.+. .+...+..+...+...|++++|..+|+++...+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 34444555555555555555555544322 234445555555555555555555555555443 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..|++++|.++|+++.+... .+...+..+...|.+.|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554322 2344555555555555566666555555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-09 Score=112.58 Aligned_cols=170 Identities=6% Similarity=-0.102 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHH--------hCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 98 RAGNVEMAFGLYDRAR--------NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
..|++++|++.|++.. +.. +.+...|..+..+|.+.|++++|++.|+++.+.. +-+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 4555555555555554 221 1234455555555555555555555555555432 22344555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
|++++|.+.|++.++... -+...+..+..+|.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555554321 134445555555555555555 5555555544322 3445555555555555555555555
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHh
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSC 274 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~ 274 (546)
++..+.. +-+...+..+..++..
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC-
T ss_pred HhhcccC--cccHHHHHHHHHHHHc
Confidence 5554432 2223444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-08 Score=82.16 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34455555555555555555555555432 2234445555555555555555555555554432 123444444444555
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
+.|++++|.++++++.+... .+...+..+...+...|++++|.+.|+++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555554444321 133444444444444444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-08 Score=91.45 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=170.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
-.|.+..++.-. .+.........-.-+.++|...|++.... .-.|....+..+.. |...+ ++.
T Consensus 25 y~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~ 87 (310)
T 3mv2_B 25 YTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIE 87 (310)
T ss_dssp TTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCH
T ss_pred HhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHH
Confidence 568888887733 32221223334445668888888876421 12345444443333 33322 677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~- 165 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA- 165 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 788877665 45666777888999999999999999999877653 236778888999999999999999999999874
Q ss_pred CCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-
Q 009025 257 NCQP-----DSWTFSSMITIC--SCRG--KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL- 326 (546)
Q Consensus 257 ~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 326 (546)
.| +..+...|..++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56 356666666663 3334 8999999999987643 55444445555899999999999999876642
Q ss_pred ----CC---CC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHH
Q 009025 327 ----GI---TP-DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 368 (546)
Q Consensus 327 ----~~---~p-~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 368 (546)
.. .| |..++..++......|+ ++.+++.++.+..|+...+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHH
Confidence 11 24 44566566666666665 78899999999998877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-07 Score=94.51 Aligned_cols=137 Identities=8% Similarity=0.068 Sum_probs=87.9
Q ss_pred cCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC
Q 009025 80 VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN---FDGCLNVYEEMKAIG-VKPN 155 (546)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~ 155 (546)
.+|.+... .+..+....+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+..+|++..... ..|+
T Consensus 61 ~np~d~~~-W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 61 EQPTDIFL-YVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp HCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred HCcCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 44544332 234444555678899999999999876 34577788888888888888 999999999988763 1378
Q ss_pred HHHHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh---------cCChHHHHHHHH
Q 009025 156 MITYNNLLDTMGRAKRP--------WQVKTIYKEMTD-NGL-SPN-WNTYASLLRAYGR---------ARYGEDTLSVYR 215 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~g~~~~A~~~~~ 215 (546)
+..|...+.-..+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++.+.++|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88888877766555543 334577777554 465 443 4566666654432 233455666665
Q ss_pred HHH
Q 009025 216 EMK 218 (546)
Q Consensus 216 ~m~ 218 (546)
+++
T Consensus 219 raL 221 (679)
T 4e6h_A 219 TLL 221 (679)
T ss_dssp HHT
T ss_pred HHH
Confidence 554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-08 Score=91.88 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009025 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 140 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665544 45555555666677777777777777777665543 1245666677777777777777777777776
Q ss_pred HcCCCc-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 219 EKGMQL-----SVTLYNTLLAMC--ADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 219 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
+. .| +..+...|+.++ ...| ++.+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65 33 234444455442 2223 677777777776553 3443333444446777777777777777655
Q ss_pred HcC-----C----CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009025 290 EAG-----F----EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333 (546)
Q Consensus 290 ~~~-----~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 333 (546)
+.. . .-|..+...+|......|+ +|.+++.++.+. .|+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 320 0 1245555455555555565 667777777763 45543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-08 Score=92.03 Aligned_cols=62 Identities=8% Similarity=0.082 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCR----------GKVSEAEAMFNEMLEA 291 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 291 (546)
..+...|.+.|++++|+..|+++.+...-.+ ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4456666777777777777777665431011 234555666666654 6667777777776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-07 Score=84.99 Aligned_cols=214 Identities=7% Similarity=-0.010 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITIC----SCR---GKV 278 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~----~~~---g~~ 278 (546)
++|+++++.++..+.. +..+|+.--..+...| ++++++++++.+.... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4566666655554322 3445555555555555 6666666666665543 33444444332222 333 556
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC-------HHH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD--DVVRALNRLPELGITPDDRFCGCLLNVMTQTP-------KEE 349 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-------~~~ 349 (546)
++++++++++.+...+ |...|+.-...+.+.|.++ ++++.++++++.... |...|+.-...+...+ -++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666655433 5566665555555556665 666666666654322 4444444444444333 267
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-----CccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-----DVKKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+.+.++.++..+|....+++.+...+.+.|...+++.++.+++.. ..+...+..++++|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777888888888888888877777776666555556666666432 224568889999999999999999999998
Q ss_pred Hh
Q 009025 425 LT 426 (546)
Q Consensus 425 ~~ 426 (546)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-08 Score=88.20 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+..+......+.+.|++++|+..|++..+. .|+.. .|... ...... .........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKNS--------------EISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcchh--------------hhhHHHHHHHHH
Confidence 344445556667778888888888777764 23322 22210 000000 001122334677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-- 277 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-- 277 (546)
+|.+.|++++|+..|++..+.... +...|..+...|...|++++|+..|++..+.. +-+..+|..+...|...|+
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Confidence 777888888888888887776432 67777778888888888888888888877765 5567777777777765543
Q ss_pred HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLF--VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 334 (546)
.+.+...++.... |+.. .+..+..++...|++++|+..|++.++ +.|+...
T Consensus 140 ~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 140 KKKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 3344555555432 3332 333445555667788888888887776 4566543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-07 Score=85.02 Aligned_cols=176 Identities=14% Similarity=0.039 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 009025 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK----RPWQVKTIY 179 (546)
Q Consensus 104 ~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~ 179 (546)
+|++.|+...+.| ++.++..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677766653 67777777777777888888888888877754 55666667776666 5 777788877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 009025 180 KEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCAD----VGYTDEAFEIFE 250 (546)
Q Consensus 180 ~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 250 (546)
++..+.| +...+..|..+|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|+++|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7777654 56667777777766 67777777777777766521 015666777777776 667777777777
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCR-G-----KVSEAEAMFNEMLEAG 292 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 292 (546)
+..+.+ .+...+..|..+|... | +.++|..+|++..+.|
T Consensus 154 ~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 776642 2334566666666543 2 6777777777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-06 Score=91.50 Aligned_cols=326 Identities=10% Similarity=0.061 Sum_probs=215.4
Q ss_pred hcCC---HHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHH
Q 009025 98 RAGN---VEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNF--------DGCLNVYEEMKA-IGV-KPN-MITYNNL 162 (546)
Q Consensus 98 ~~g~---~~~A~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~l 162 (546)
+.|. ++.+..+|++..... ..|++..|...+....+.++. +...++|+.... .|. .++ ...|...
T Consensus 112 ~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 112 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp TC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred hhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 5677 999999999999863 137899999988877666554 334577877654 365 454 5678777
Q ss_pred HHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHH----------hcCCh-------------
Q 009025 163 LDTMGR---------AKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYG----------RARYG------------- 207 (546)
Q Consensus 163 l~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~----------~~g~~------------- 207 (546)
+.-... .++++.+.++|++.+......-..+|. .+...+. ...++
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 765432 334667788888877531111112221 1111000 00001
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 208 ------------------------------------------------------EDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 208 ------------------------------------------------------~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
+.+..+|++.... ++-+...|-..+
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya 350 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMA 350 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 1122334444333 122455566666
Q ss_pred HHHHhcCCHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC-------
Q 009025 234 AMCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF---------EPN------- 296 (546)
Q Consensus 234 ~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------- 296 (546)
..+...|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+++++... .|+
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 6677788888896 999998864 366777788889999999999999999999886310 132
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC-CH-HHHHHHHHHHHHcCCChhHHH
Q 009025 297 -----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT-PK-EELGKLVECVEKSNSKLGYVV 368 (546)
Q Consensus 297 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~-g~-~~a~~~~~~~~~~~~~~~~~~ 368 (546)
...|...+....+.|..+.|..+|.+..+. +. .....|......-.+. ++ +.|.++|+...+..|+...++
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 346888888888889999999999999875 21 1223333322222333 33 899999999998888777777
Q ss_pred HHHHHhhhhhcchHHHHHHHHHhcccC-c----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 369 KLLLEEQDIEGDFKKEATELFNSISKD-V----KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 369 ~~L~~~~~~~g~~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
...+......| ..+.|..+|+..... + ....|..+++.-.+.|+.+.+.++.+++.+.-
T Consensus 508 ~~y~~fe~~~~-~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 508 NKYLDFLIYVN-EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66676666667 459999999986542 2 24589999999999999999999999998765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=108.38 Aligned_cols=173 Identities=9% Similarity=-0.053 Sum_probs=122.1
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 132 GTAGNFDGCLNVYEEMK--------AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 132 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|.+.|++.++.. +-+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888887 332 3345677777778888888888888888877753 2356777777788888
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 283 (546)
.|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..+|.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887776432 56677777778888888888 88888777765 5567777778888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 009025 284 MFNEMLEAGFEPN-LFVLTSLIQCYGKAQR 312 (546)
Q Consensus 284 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 312 (546)
.|++..+.+ |+ ...|..+..++...++
T Consensus 556 ~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 887776533 44 4556666666655443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.6e-08 Score=89.41 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+...+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|...|++.++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34444555555555555555555555555432 21 34444455555555555555555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-07 Score=84.10 Aligned_cols=175 Identities=12% Similarity=0.012 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 009025 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----YGEDTLSVY 214 (546)
Q Consensus 139 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~ 214 (546)
+|+..|++..+.| +...+..|...+...+++++|.+.|++..+.| +...+..|..+|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 5778888888764 77888889999999999999999999998875 67788888888887 6 899999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHh----cCCHHHHHHH
Q 009025 215 REMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQP--DSWTFSSMITICSC----RGKVSEAEAM 284 (546)
Q Consensus 215 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~----~g~~~~A~~~ 284 (546)
++..+.| +...+..|...|.. .+++++|+++|++..+.+ .. +...+..|...|.. .+++++|..+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998875 67788888888877 889999999999998865 21 27788888888888 7889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhhCC
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQCYGKA-Q-----RTDDVVRALNRLPELG 327 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 327 (546)
|++..+.+ .+...+..|...|... | +.++|+..|++..+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99988752 3445667777777643 3 7899999998887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=85.48 Aligned_cols=174 Identities=9% Similarity=0.001 Sum_probs=80.1
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|+..|+...+..+. +...|... ..... .......++.+..++.+.|+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHHHCCC
Confidence 334455899999999999999876321 33444440 00000 00011122334444555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY--TDEAFEIF 249 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~ 249 (546)
+++|...|++.++.. +-+...+..+..+|...|++++|+..|++..+.... +..+|..+...|...|+ .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555555555554432 123445555555555555555555555555544321 34445545444443332 22333333
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+..... .|....+..+..++...|++++|...|++.++
T Consensus 148 ~~~~~~---~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 148 KKLSSP---TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp C---CC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHhCC---CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333210 11222233334444445555555555555554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-06 Score=85.81 Aligned_cols=316 Identities=10% Similarity=0.049 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCCh
Q 009025 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-FDGCLNVYEEMKAI-GVK-PNMITYNNLLDTMG----RAKRP 172 (546)
Q Consensus 100 g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~----~~g~~ 172 (546)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..... |.. .+...|...+.-+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999985 5799999999988888774 45577788887654 433 36678887776643 24567
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-------------ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
+.+.++|++.+.....--...|......-.. .+.+..|..+++.+...-...+...|...+.--...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8899999999874221111122111110000 011222222222222110000222333333321111
Q ss_pred C--C-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 009025 240 G--Y-----TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--------------- 297 (546)
Q Consensus 240 g--~-----~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------- 297 (546)
+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..+|++.... +.+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~ 261 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAV 261 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHH
T ss_pred CccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHH
Confidence 0 0 123344555544432 334445555555555555555555555555443 1111
Q ss_pred -------------------------HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH--HHHHHHhcCCHHHH
Q 009025 298 -------------------------FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG--CLLNVMTQTPKEEL 350 (546)
Q Consensus 298 -------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~a 350 (546)
..|...+..+.+.+..+.|..+|++. +.. ..+...|. +.+........+.|
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~a 339 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATP 339 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHH
Confidence 23344444444566677777788777 211 12333333 22222222222777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 351 GKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
..+++...+..|+...++...++...+.|+ .+.|..+|+.... ....|...++.-...|+.+.+.++++++..
T Consensus 340 r~ife~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 340 YNIFSSGLLKHPDSTLLKEEFFLFLLRIGD-EENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778877777666554444444554455563 4777788877632 355777777777777888888777777764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-06 Score=80.07 Aligned_cols=225 Identities=8% Similarity=0.031 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 009025 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK--RPWQVKTIYKEMTDNGLSPNWNTYASLLRAY----GRA---RYGE 208 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~~~ 208 (546)
++|+++++.++... +-+...|+.--.++...+ ++++++++++.++....+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666666553 223445666556666666 666666666666654322 334444333333 333 5666
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK------VSE 280 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 280 (546)
+++++++.+.+...+ +-.+|+--.-.+.+.|.++ +++++++++.+.. +-|...|+.-...+.+.|. +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 777777777665433 5666666666666666666 6777777776655 4566666655555555554 666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCC--CCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD-VVRALNRLPELG--ITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
+++.+++++...+. |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+..++.+.|+ ++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 66676666665543 56666666666666665333 334555444321 11234445555555555555 555555555
Q ss_pred HHH-cCCChhHHH
Q 009025 357 VEK-SNSKLGYVV 368 (546)
Q Consensus 357 ~~~-~~~~~~~~~ 368 (546)
+.+ .+|--..++
T Consensus 284 l~~~~Dpir~~yW 296 (306)
T 3dra_A 284 LKSKYNPIRSNFW 296 (306)
T ss_dssp HHHTTCGGGHHHH
T ss_pred HHhccChHHHHHH
Confidence 543 344433333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9e-08 Score=100.31 Aligned_cols=154 Identities=11% Similarity=-0.058 Sum_probs=116.7
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 178 (546)
.|++++|+..|++..+... -+...|..+...|.+.|++++|++.|++..+.. +.+...|..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887643 367889999999999999999999999998874 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 009025 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV---GYTDEAFEIFEDMKSS 255 (546)
Q Consensus 179 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 255 (546)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998864 33678899999999999999999999999888743 3678888899999999 9999999999998887
Q ss_pred C
Q 009025 256 E 256 (546)
Q Consensus 256 ~ 256 (546)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-07 Score=82.59 Aligned_cols=187 Identities=12% Similarity=0.025 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH-HHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-P-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNW-NTYA 195 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~ 195 (546)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++++.... +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556667777888889999999999988875211 1 1356777888888889999999999888875322 111 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH----------
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF---------- 265 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------- 265 (546)
.+..++.+.+.. .+ ..|..+...+...|++++|+..|+++.+.. +-+...+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence 444444432210 00 011122233334556666666666666543 1122222
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 266 -------SSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 266 -------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+...|.+.|++++|...|+++++...... ...+..+..+|.+.|+.++|.+.++.+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 2334455556666666666666555321110 13455555556666666666666655554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-07 Score=82.71 Aligned_cols=177 Identities=11% Similarity=-0.005 Sum_probs=117.4
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCc-c-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWR-I-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTM 166 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~ 166 (546)
...+.+.|++++|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+.. |+. ..+..+..++
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHH
Confidence 33455899999999999999986322 1 14678889999999999999999999998763 332 2444455555
Q ss_pred Hh------------------cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 009025 167 GR------------------AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227 (546)
Q Consensus 167 ~~------------------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 227 (546)
.. .|+.++|...|+++++.. |+ .....+.... ..+...+ ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~--------~~ 148 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL--------AK 148 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH--------HH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH--------HH
Confidence 44 345666666666666542 22 1111111100 0000000 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS---WTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
....+...|.+.|++++|+..|+++.+.. +.+. ..+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 12345677888999999999999988764 2222 5678889999999999999999998887643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-07 Score=90.37 Aligned_cols=166 Identities=11% Similarity=0.063 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL- 198 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll- 198 (546)
+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|..+++++... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 44556666677777777777777777776653 235566667777777777777777777766553 23433222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
..+.+.++.++|++.|++...... .+...+..+...|...|++++|++.|+++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 224555666666777766666532 2566666677777777777777777777666531011145666666666666666
Q ss_pred HHHHHHHHHHH
Q 009025 279 SEAEAMFNEML 289 (546)
Q Consensus 279 ~~A~~~~~~m~ 289 (546)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.8e-08 Score=84.19 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
...+..+...+...|++++|+..|+++.+...-..+...+..+...+...|+.++|...|++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 44444444444444444444444444444321001123444444444444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=89.77 Aligned_cols=167 Identities=7% Similarity=-0.053 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH-HH
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY-NT 231 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ 231 (546)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+..+|.+.|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445566677777888888888888888887753 2356777788888888888888888888776653 343322 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKA 310 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 310 (546)
....+...++.++|++.|++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++..|...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2334666777777888888877765 5677788888888888888888888888888754321 256778888888888
Q ss_pred CChhHHHHHHHHhh
Q 009025 311 QRTDDVVRALNRLP 324 (546)
Q Consensus 311 g~~~~A~~~~~~m~ 324 (546)
|+.++|...|++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-07 Score=88.15 Aligned_cols=201 Identities=8% Similarity=-0.015 Sum_probs=112.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++++|..++++..+.... . + +...+++++|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 356788888888877653110 0 0 11135566666555543 234555566666666
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHH
Q 009025 178 IYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFE 247 (546)
Q Consensus 178 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~ 247 (546)
.|.+..+. |-.. -..+|+.+..+|.+.|++++|+..|++..+. |-.. -..+++.+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66555432 1000 1335666666666667777776666655432 1110 13456666666666 77777777
Q ss_pred HHHHHHhCCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 009025 248 IFEDMKSSENC--QP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 248 ~~~~m~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~ 318 (546)
.|++......- .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665542100 00 1346667777777777777777777776642 11111 2245556666666777777777
Q ss_pred HHHHhh
Q 009025 319 ALNRLP 324 (546)
Q Consensus 319 ~~~~m~ 324 (546)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=97.90 Aligned_cols=155 Identities=8% Similarity=-0.035 Sum_probs=120.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
.|++++|++.|++..+.. +-+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 3457889999999999999999999999999864 33688999999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 009025 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLE 290 (546)
Q Consensus 214 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 290 (546)
|++..+... .+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988753 368899999999999999999999999998875 56788999999999999 999999999999988
Q ss_pred cCC
Q 009025 291 AGF 293 (546)
Q Consensus 291 ~~~ 293 (546)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.3e-08 Score=84.43 Aligned_cols=159 Identities=6% Similarity=0.010 Sum_probs=100.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhc
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADV 239 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~ 239 (546)
.+...+.+.|++++|...|++.++.. +.+...+..+..+|.+.|++++|+..|++..... |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34445556666666666666554432 1245556666666666666666666666655442 233222221111 1122
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 318 (546)
+...+|+..|++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...|...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 23334677788777654 4567888888888888888888888888888765432 35678888888888888888888
Q ss_pred HHHHhh
Q 009025 319 ALNRLP 324 (546)
Q Consensus 319 ~~~~m~ 324 (546)
.|++.+
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=83.71 Aligned_cols=139 Identities=9% Similarity=-0.046 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++++|+..++....... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 45556666666555544311 123344455555566666666666666555543 2244555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV-YREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.|++.++... -+..++..+...|.+.|++++|.+. +++..+.... +..+|......+...|
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 5555555321 1345555555555555555444333 3444443211 3444444444443333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.1e-08 Score=81.31 Aligned_cols=145 Identities=11% Similarity=0.021 Sum_probs=116.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
|...+...|++++|++.++..... .|+ ...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344556678999999999988754 233 3456678899999999999999999999864 237889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI-FEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
++++|+..|++..+.... +..+|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCc
Confidence 999999999999987533 688999999999999999876665 58877764 5678888888888877775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.9e-06 Score=77.64 Aligned_cols=228 Identities=10% Similarity=-0.014 Sum_probs=134.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
++.+.....+.+..++|++++++++.... -+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33333334444555677777777777532 25566666666666666 477777777777776544 6667776666666
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 238 DV-G-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS--------EAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 238 ~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
+. + ++++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 65 5 6777777777777665 566777766555555555554 677777777765543 666666666655
Q ss_pred HhcCC-------hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcc
Q 009025 308 GKAQR-------TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 380 (546)
Q Consensus 308 ~~~g~-------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 380 (546)
.+.++ ++++++.+++++ ..+|.....++.+...+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI----------------------------------~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSI----------------------------------HLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHH----------------------------------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHH----------------------------------HhCCCCHHHHHHHHHHHHhcCC
Confidence 55554 344444444444 4444444433332222222221
Q ss_pred h-------------------HHHHHHHHHhccc--------CccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 381 F-------------------KKEATELFNSISK--------DVKKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 381 ~-------------------~~~A~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
. ..+..++...+.. .+....+.-|++.|...|+.++|.++++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 1222222222221 1344578889999999999999999999975
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-07 Score=88.05 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=151.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577889999999887542 111 1 11157888888888765 4578889999999999
Q ss_pred HHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 009025 214 YREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN--CQPD--SWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 214 ~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~--~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
|.+..+. +-.. -..+|+.+...|...|++++|+..|++...... -.+. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9887653 2111 145888999999999999999999998654310 0222 4678899999988 999999999
Q ss_pred HHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhcCCH-HHHHHH
Q 009025 285 FNEMLEAGFEP-----NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPD-DRFCGCLLNVMTQTPK-EELGKL 353 (546)
Q Consensus 285 ~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~-~~a~~~ 353 (546)
|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|+ ++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887531111 1467889999999999999999999998752 21111 1356677777778888 999999
Q ss_pred HHHHHHcCCChh
Q 009025 354 VECVEKSNSKLG 365 (546)
Q Consensus 354 ~~~~~~~~~~~~ 365 (546)
+++.. ..|...
T Consensus 218 ~~~al-~~p~~~ 228 (307)
T 2ifu_A 218 VRESY-SIPGFS 228 (307)
T ss_dssp HHHHT-TSTTST
T ss_pred HHHHh-CCCCCC
Confidence 99998 877654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-06 Score=77.60 Aligned_cols=123 Identities=7% Similarity=-0.046 Sum_probs=60.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
+...+...|++++|...|++.. .|+..++..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444444444444444331 2344444444455555555555555555444432 1234445555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 242 TDEAFEIFEDMKSSENCQP----------------DSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+++|++.|++..+.. +. ....+..+...|.+.|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555554432 11 1245566666666666666666666666653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-06 Score=77.39 Aligned_cols=128 Identities=11% Similarity=-0.017 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...+...|++++|++.|++.. .++...|..+...|...|++++|++.|++..... +.+...|..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 45566777888899999999988763 4578888999999999999999999999988765 56788888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 273 SCRGKVSEAEAMFNEMLEAGFE--------------P-NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
...|++++|.+.|++..+.... | ....+..+..+|.+.|++++|...|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999998874322 1 1267788888888899999999999888864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-06 Score=78.87 Aligned_cols=161 Identities=11% Similarity=0.095 Sum_probs=95.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHH
Q 009025 163 LDTMGRAKRPWQVKTIYKEMTDNGL-SPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTL 232 (546)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~l 232 (546)
+..+...|++++|..++++..+... .++. ..+..+...|...|++++|+..|++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777766321 1121 12334555666666777777777777663211 12 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 009025 233 LAMCADVGYTDEAFEIFEDMKS----S-ENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLT 301 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~----~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~ 301 (546)
...|...|++++|+.+|+++.+ . +. .+ ...+|..+...|.+.|++++|...+++..+. +..+. ...|.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777777777777777663 1 11 11 2235667777777777777777777765532 11122 45666
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHhh
Q 009025 302 SLIQCYGKAQR-TDDVVRALNRLP 324 (546)
Q Consensus 302 ~li~~~~~~g~-~~~A~~~~~~m~ 324 (546)
.+..+|.+.|+ +++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666663 466766666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-07 Score=86.59 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 269 (546)
+...+..+...+.+.|++++|+..|++..+... .+...|..+...|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 344555566666666666666666666665432 255666666666666677777776666666554 44566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009025 270 TICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+|...|++++|...|++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-06 Score=73.62 Aligned_cols=127 Identities=9% Similarity=-0.026 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...+...|++++|...|++..+... .+..++..+...+...|++++|++.|++..... +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 344455555556666666666665555432 245555556666666666666666666655543 34555566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHh
Q 009025 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLT--SLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 323 (546)
...|++++|...|++..+.... +...+. .++..+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666554321 233332 2222345556666666655544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=82.15 Aligned_cols=165 Identities=6% Similarity=-0.054 Sum_probs=125.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----WNTYA 195 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~ 195 (546)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...|++..+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999887421 2221 23445666777788999999999999884322 22 34789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEK-----GMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWTF 265 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~ 265 (546)
.+...|...|++++|+..|+++.+. +..+. ..+|..+...|.+.|++++|++.+++..+. +....-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998741 11222 347888999999999999999999987642 2211226789
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 009025 266 SSMITICSCRGK-VSEAEAMFNEMLE 290 (546)
Q Consensus 266 ~~li~~~~~~g~-~~~A~~~~~~m~~ 290 (546)
..+...|.+.|+ +++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-06 Score=69.80 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
+......|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..+|.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHH
Confidence 33344444444444444444444443321 134444444444444444444444444444433 333444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~ 290 (546)
..|++++|.+.|++.++
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-06 Score=67.80 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...|...|++++|.++|+++.+.. +.+..++..+...+...|++++|..+|+++.... +.+..++..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 33444444444444444444444444332 1133444444444444444444444444444432 23344444444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009025 273 SCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~ 290 (546)
...|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-06 Score=71.49 Aligned_cols=128 Identities=14% Similarity=-0.022 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
.+..+...+...|++++|...|++..+.. +.+..++..+..+|...|++++|++.+++..+... .+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34444444555555555555555554432 12445555555555566666666666655555432 24555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
..|++++|.+.|++..... +.+...+. .++..+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666665543 23333332 23333555666666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-05 Score=80.34 Aligned_cols=259 Identities=10% Similarity=-0.053 Sum_probs=166.2
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCccC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWRID----------------PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG- 151 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 151 (546)
.+.....+.+.|++++|++.|..+.+...... ..++..|...|.+.|++++|.+.+..+...-
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44444556689999999999999987532111 1247789999999999999999998876531
Q ss_pred CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 009025 152 VKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEK-- 220 (546)
Q Consensus 152 ~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-- 220 (546)
-.++. .+.+.+...+...|+.+.+.++++.... .+..+. ..++..+...|...|++++|..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 11222 2333344445567889999998887754 232222 567888999999999999999999987643
Q ss_pred CC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009025 221 GM---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQP-D--SWTFSSMITICSCRGKVSEAEAMFNEMLEA- 291 (546)
Q Consensus 221 g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 291 (546)
+. .....++..++..|...|++++|..++++..... ...| . ...+..+...+...|++++|...|.+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 11 1124678889999999999999999998865421 1012 1 345677778888899999999888777542
Q ss_pred ---CCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHhh--hCCCCCCHHHHHHHHHHHhcCCH
Q 009025 292 ---GFEPNLFVLT----SLIQCYGKAQRTDDVVRALNRLP--ELGITPDDRFCGCLLNVMTQTPK 347 (546)
Q Consensus 292 ---~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~--~~~~~p~~~t~~~ll~~~~~~g~ 347 (546)
+......... .++-+....+..+.....+.... .....++...+..++.++....-
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 311 (434)
T 4b4t_Q 247 HNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSL 311 (434)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhH
Confidence 2222221111 11222222333344444443322 22233445667777777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.4e-06 Score=76.91 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMK---SSENCQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG----FEP-NL 297 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 297 (546)
+|+.+...|...|++++|+..|++.. +.....+ ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44444555555555555555554443 1100000 11344455555555555555555555443211 000 03
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHh
Q 009025 298 FVLTSLIQCYGKAQRTDDV-VRALNRL 323 (546)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A-~~~~~~m 323 (546)
.+|..+..+|.+.|++++| ...|++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4445555555555555555 4444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-06 Score=69.44 Aligned_cols=101 Identities=8% Similarity=0.016 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...|++.++.+.. +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 456667777888888888888888877765 567778888888888888888888888887775432 56777778888
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
|...|++++|+..|++.++ +.|+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHCCCHHHHHHHHHHHHH--HCcCC
Confidence 8888888888888887776 34543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=77.41 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----H
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEK----GMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----S 262 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~ 262 (546)
++..+...|...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++......-..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444445555444444443321 1010 1233444444555555555555555544321000011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.++..+...+...|++++|.+.+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 223444455555555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-06 Score=68.17 Aligned_cols=117 Identities=16% Similarity=0.041 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+..+...+...|++++|...|++...... .+...+..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 3444444555555555555555555544321 134445555555555555555555555555432 3344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 312 (546)
|...|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 5555555555555555554322 134444444444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.1e-05 Score=71.30 Aligned_cols=170 Identities=6% Similarity=0.010 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-R-YGEDTLSV 213 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g-~~~~A~~~ 213 (546)
.++|+++++.++... +-+..+|+.--..+...| ++++++++++.++.... -+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 345666666666653 224445666555555566 46677777777666532 2555666555555554 5 66677777
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-------H
Q 009025 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTD--------EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-------V 278 (546)
Q Consensus 214 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-------~ 278 (546)
++++.+...+ +-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ +
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHH
Confidence 7777665433 5666665555555544444 7777777777765 5677777777766666665 5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 312 (546)
+++++.+++++...+. |...|+.+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 7777777777765543 66677666666655554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-06 Score=78.34 Aligned_cols=187 Identities=9% Similarity=-0.069 Sum_probs=107.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC---------------
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTL-------IKLYGTAGNFDGCLNVYEEMKAIGVKPN--------------- 155 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 155 (546)
+.++.+.|++.|.++.+..+. ....|+.+ ...+.+.++..+++..+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 567888888888888776433 66677766 4555555555555555554443 1111
Q ss_pred -------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--H
Q 009025 156 -------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--V 226 (546)
Q Consensus 156 -------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~ 226 (546)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233345555666777777777776665533 333344455556666777777777766443321 110 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
..+..+..++...|++++|+..|++...... .|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~-~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPA-GEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT-TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455566666667777777777766653221 132 234455555666666666666666666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-05 Score=76.13 Aligned_cols=168 Identities=7% Similarity=0.002 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCC--H
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPD--S 262 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~--~ 262 (546)
..+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|+..|++......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556666777777777777776665432211 122344556667778888888888877643210 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLE---AGFE-P--NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPD- 331 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~- 331 (546)
.+|+.+...|...|++++|...|++..+ .... + ...++..+...|...|++++|+..|++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888888888888888888888762 2111 1 1257777888888888888888888877642 11111
Q ss_pred HHHHHHHHHHHhcCCH-HHH-HHHHHHHHH
Q 009025 332 DRFCGCLLNVMTQTPK-EEL-GKLVECVEK 359 (546)
Q Consensus 332 ~~t~~~ll~~~~~~g~-~~a-~~~~~~~~~ 359 (546)
..++..+..++...|+ ++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4567778888888888 777 666666544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.4e-06 Score=66.50 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
..|..+...+...|++++|+++|+++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344445555555555555555555554432 2233444444444444444444444444444332 12333444444444
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009025 202 GRARYGEDTLSVYREMKE 219 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~ 219 (546)
.+.|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.9e-05 Score=70.66 Aligned_cols=227 Identities=7% Similarity=0.046 Sum_probs=143.6
Q ss_pred HHcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 132 GTAGNFD-GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 132 ~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
.+.|.+. +|+++++.+.... +-+..+|+.--..+...+. +++++.+++.++... +-+..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456555 6899999888764 2244456654444433332 567778888877753 2367777777667
Q ss_pred HHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 009025 201 YGRAR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY-TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-- 275 (546)
Q Consensus 201 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 275 (546)
+.+.+ .+++++.+++.+.+.... |-.+|+--.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhh
Confidence 76777 478888888888877544 77778777777777777 588888888888765 56777777666655554
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHhhhCCCCCCH
Q 009025 276 ------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-----------QRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 276 ------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
+.++++++.+++.+...+. |...|+-+-..+.+. +.++++++.++++.+ +.||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 4467788888877765543 666676555555444 346677777777776 34543
Q ss_pred H-HH---HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH
Q 009025 333 R-FC---GCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 366 (546)
Q Consensus 333 ~-t~---~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~ 366 (546)
. .+ ..+..+....+. +++...+.++.+.+|.-..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 1 11 111122223334 5666666666666665443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=73.72 Aligned_cols=96 Identities=9% Similarity=0.028 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+.... +...|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 344555555555566666666665555543 345555555555566666666666666555554322 34455555555
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
|.+.|++++|+..|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5666666666666655554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.5e-07 Score=77.07 Aligned_cols=119 Identities=8% Similarity=0.042 Sum_probs=71.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGKV--S 279 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 279 (546)
..|++++|+..+++..+... .+...|..+...|...|++++|+..|++..... +.+...+..+... |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566666666666655432 255666666666666667777766666666543 3455566666666 5566666 6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+|...|+++.+.... +...+..+...|...|++++|...|+++.+
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777777666654322 455666666666667777777777766665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-05 Score=80.08 Aligned_cols=209 Identities=10% Similarity=0.110 Sum_probs=134.9
Q ss_pred hcC-CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 009025 98 RAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQV 175 (546)
Q Consensus 98 ~~g-~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a 175 (546)
+.| +++.|+.+|+.+... -|. |+++.+..+|++.... .|+...|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 333 8899999999999885 5899999999988877764 4567
Q ss_pred HHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH------------
Q 009025 176 KTIYKEMTDN-GLS-PNWNTYASLLRAYG----RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA------------ 237 (546)
Q Consensus 176 ~~~~~~m~~~-g~~-p~~~~~~~ll~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~------------ 237 (546)
..+|+..+.. |.. .+...|...+..+. ..++.+.+.++|++.+.....--...|......-.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 7888887764 533 36678888877664 34678899999999987422111223332222111
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 238 -DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG--K-----VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 238 -~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
..+.+..|..+++++...-. ..+...|...+..-...+ - .+.+..+|++++.... .+...|...+.-+.+
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~-~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIR-GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 11223344444544443110 123446666555533321 1 3457789999887543 457888888888899
Q ss_pred cCChhHHHHHHHHhhhC
Q 009025 310 AQRTDDVVRALNRLPEL 326 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~ 326 (546)
.|+.++|..+|++....
T Consensus 226 ~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM 242 (493)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 99999999999999876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=77.13 Aligned_cols=156 Identities=10% Similarity=-0.041 Sum_probs=117.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCh
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVK-PNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~ 172 (546)
..|++++|.++++.+... ......++..+...|...|++++|+..|++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 679999999966665542 2336778999999999999999999999998762 212 2345788888999999999
Q ss_pred hHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCC
Q 009025 173 WQVKTIYKEMTDN----GLSP--NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGY 241 (546)
Q Consensus 173 ~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~ 241 (546)
++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+. +... -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999887653 2111 2456788889999999999999999987642 2111 12346788889999999
Q ss_pred HHHHHHHHHHHHh
Q 009025 242 TDEAFEIFEDMKS 254 (546)
Q Consensus 242 ~~~A~~~~~~m~~ 254 (546)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-06 Score=68.96 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...+.+.|++++|++.|++..+... .+...+..+...|...|++++|++.|++..+.. +.+...+..+...|
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHHH
Confidence 333344444444444444444444433321 133334444444444444444444444444332 22334444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009025 273 SCRGKVSEAEAMFNEML 289 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~ 289 (546)
...|++++|.+.|++..
T Consensus 95 ~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=76.12 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=96.9
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-MGRAKRP-- 172 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~-- 172 (546)
+...|++++|+..|+...+... .+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 4478899999999999887643 378899999999999999999999999988764 3467778888888 7788888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
++|...+++.++.. +.+...+..+..+|...|++++|...|+++.+..
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999988763 2357788888888999999999999999888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.7e-06 Score=75.83 Aligned_cols=187 Identities=9% Similarity=-0.059 Sum_probs=118.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 009025 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNL-------LDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------- 190 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 190 (546)
..++...|.+.|.++.+.. +-....|+.+ ...+.+.++..++...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5688889999999888764 3356677766 3445555445544444444333 2211
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--
Q 009025 191 -------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-- 261 (546)
Q Consensus 191 -------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 261 (546)
...+-.+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 2234445666777788888888887776543 333355555667778888888888887554421 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566777777888888888888887764332243 335566666777778888888888777763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.4e-06 Score=69.86 Aligned_cols=99 Identities=10% Similarity=-0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...+.+.|++++|+..|++....... +...|..+..+|...|++++|+..|++..... +.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHH
Confidence 456777778888888888888888888877533 67888888888888888888888888888765 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
+|...|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.3e-06 Score=66.76 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455555555555566666666665555432 2244455555555555555555555555554432 123444445555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
+|.+.|++++|.+.|++..+... .+...+..+...+.+.|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 55555555555555555444321 13344444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.2e-06 Score=81.11 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.++.... +...+..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 272 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3556666666666666666666666666654 445666666666666666666666666666654322 4555666666
Q ss_pred HHHhcCChhHH-HHHHHHhh
Q 009025 306 CYGKAQRTDDV-VRALNRLP 324 (546)
Q Consensus 306 ~~~~~g~~~~A-~~~~~~m~ 324 (546)
++.+.|+.++| ..+|+.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666 33444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.6e-06 Score=67.47 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555555555555555555555555432 2244445555555555555555555555554432 123444444444
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009025 200 AYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~ 219 (546)
+|.+.|++++|++.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.2e-06 Score=80.44 Aligned_cols=132 Identities=8% Similarity=-0.094 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------WNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
...|..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666677777777777777777777766432211 4788888999999999999999999988875
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA-EAMFNEMLE 290 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 290 (546)
. .+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|+.++| ..+|+.|..
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 378888999999999999999999999988875 56788888899999999998888 456666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-06 Score=81.51 Aligned_cols=98 Identities=6% Similarity=-0.040 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666666666677777777776666542 2255566666666666666666666666666542 224556666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009025 200 AYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~ 219 (546)
+|.+.|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=72.72 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++....... +...|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344444555555555555555555555443 344555555555555555555555555555543321 34445555555
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
|...|++++|+..|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=78.05 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.+..+..+|.+.|++++|+..+++..+... .+...+..+..+|...|++++|++.|++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333444444444444444444444443321 1333444444444444444444444444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=64.88 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
.|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|++..+.... +...|..+..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444455555555555555544433 334445555555555555555555555555443221 344444555555
Q ss_pred HhcCChhHHHHHHHHhhh
Q 009025 308 GKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 308 ~~~g~~~~A~~~~~~m~~ 325 (546)
...|++++|+..|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=71.70 Aligned_cols=98 Identities=15% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...+.+.|++++|+..|++...... .+...|..+..+|...|++++|+..|++..... +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 34555566667777777777777777666542 256667777777777777777777777776654 445666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 009025 271 ICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-05 Score=61.11 Aligned_cols=60 Identities=20% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.|++..
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333344444444443333322 2233333333333333334444433333333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=65.27 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPN----LFVLT 301 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 301 (546)
++..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++.++... .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44455555555555555555555555543 34455555555555556666666555555543211 111 12445
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+..++...|++++|++.|++.++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555556666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-05 Score=63.91 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 3455566666677777777777776666532 256667777777777777777777777766654 4456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009025 272 CSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~ 290 (546)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777776665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-05 Score=69.76 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..|..+..+|...|++++|+..+++..... +.+...+..+..+|...|++++|.+.|++..+.... +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 677778888888888888888888888765 567788888888888888888888888888775432 56667777777
Q ss_pred HHhcCChhHHH-HHHHHhhh
Q 009025 307 YGKAQRTDDVV-RALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~-~~~~~m~~ 325 (546)
+...++.+++. ..|..|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 76666666655 44555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00063 Score=64.79 Aligned_cols=193 Identities=7% Similarity=-0.036 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAM 284 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 284 (546)
++++.+++.+.....+ +..+|+.-...+.+.| .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4445555554444322 4444444444444444 2455555555555443 3444444444444444444 3455555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC--CH-HHHHHHHHHHHHcC
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PK-EELGKLVECVEKSN 361 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--g~-~~a~~~~~~~~~~~ 361 (546)
++++++..+. |...|+.....+.+.+....+ ++ -... +. +++.+.+......+
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~-------------~~----------~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS-------------GP----------QGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----------------------------CCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc-------------cc----------ccccchHHHHHHHHHHHHHHHhC
Confidence 5555544332 444444433333222100000 00 0000 22 56666666666677
Q ss_pred CChhHHHHHHHHhhhhh-c---------chHHHHHHHHHhccc-CccchhhHHHHHHH-----HhcCCHHHHHHHHHHHH
Q 009025 362 SKLGYVVKLLLEEQDIE-G---------DFKKEATELFNSISK-DVKKAYCNCLIDLC-----VNLNLLENACKLLELGL 425 (546)
Q Consensus 362 ~~~~~~~~~L~~~~~~~-g---------~~~~~A~~~~~~~~~-~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~ 425 (546)
|....+++.+...+... | +.++++++.++++.. .|+. .|+.+.-+. ...|..++....+.+++
T Consensus 224 P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 224 PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 76666654332222222 1 245677776666542 3443 343322222 13567778888888887
Q ss_pred hcc
Q 009025 426 TLE 428 (546)
Q Consensus 426 ~~g 428 (546)
+.+
T Consensus 303 ~~D 305 (331)
T 3dss_A 303 AVD 305 (331)
T ss_dssp HHC
T ss_pred HhC
Confidence 665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=5.2e-05 Score=59.90 Aligned_cols=95 Identities=12% Similarity=-0.056 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 238 (546)
+..+...+...|++++|...|++..... +.+...+..+..+|.+.|++++|...+++..+... .+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3334444444444444444444444321 11344444444444445555555555554444321 134444555555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 009025 239 VGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 239 ~g~~~~A~~~~~~m~~~ 255 (546)
.|++++|.+.|++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 55555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-05 Score=62.90 Aligned_cols=96 Identities=8% Similarity=-0.070 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...+.+.|++++|+..|++...... .+...|..+...+...|++++|+..|++..... +.+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHH
Confidence 33344444444444444444444444433321 133344444444444444444444444444332 223334444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009025 271 ICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~ 289 (546)
.|...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-05 Score=62.30 Aligned_cols=56 Identities=5% Similarity=-0.045 Sum_probs=21.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
...+.+.|++++|...|++..+... .+...|..+...+...|++++|.+.|++..+
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333344444444444443333221 1233333333334444444444444444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-05 Score=65.27 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=32.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.+.+.|++++|+..|++...... .+...|..+..+|...|++++|+..|++..... +.+...+..+..+|...|+++
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHH
Confidence 33333444444444443333321 133333333333444444444444444433332 223333333333344444444
Q ss_pred HHHHHHHHH
Q 009025 280 EAEAMFNEM 288 (546)
Q Consensus 280 ~A~~~~~~m 288 (546)
+|.+.|++.
T Consensus 104 ~A~~~~~~a 112 (142)
T 2xcb_A 104 GAESGFYSA 112 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.3e-05 Score=65.92 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34444555555555555555555555544221 44555555555555555555555555555543 3345555555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009025 272 CSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~ 290 (546)
|...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-05 Score=65.23 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++....... +...|..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 4455666777788888888888888887765 567777888888888888888888888888775432 5566777778
Q ss_pred HHHhcCChhHHHHHHHHhhh
Q 009025 306 CYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~ 325 (546)
+|...|++++|+..|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.6e-05 Score=61.85 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
..+..+...+.+.|++++|++.|++..+.. |+ ...|..+...|...|++++|++.+++..... +.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 334444444444444444444444444331 22 3344444444444444444444444444332 223444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+..+|...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=64.03 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCC----HHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPD----SWTFSSM 268 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~~l 268 (546)
+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|++....... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444332 113344444444444444444444444444332100 011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~ 290 (546)
...|...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.1e-05 Score=62.75 Aligned_cols=98 Identities=13% Similarity=-0.044 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...|..+...+...|++++|+..|++..... +.+...|..+...|...|++++|...|++..+.... +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 56777788888888888888888888877765 556778888888888888888888888888775432 567778888
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00012 Score=73.23 Aligned_cols=198 Identities=7% Similarity=-0.067 Sum_probs=141.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPN 190 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 190 (546)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999987532111 134778899999999999999999887653 11122
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 009025 191 W----NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----EN 257 (546)
Q Consensus 191 ~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 257 (546)
. .+.+.+-..+...|+.++|.++++..... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23334444555678999999999877542 2222 2467888999999999999999999987643 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GF-EP-N--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
-.....++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0123557889999999999999999999887642 11 12 1 24566677778889999999988877753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.7e-05 Score=61.84 Aligned_cols=100 Identities=7% Similarity=0.007 Sum_probs=69.6
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 193 (546)
..+...+..+...+...|++++|+..|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346777888888888888888888888888765 355 4566666677777777777777777766642 224566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
+..+..+|...|++++|.+.|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666677777777777777666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-05 Score=62.18 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPN----WNTYA 195 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~ 195 (546)
.++..+...+.+.|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.+++.++... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666666666666666666543 23455566666666666666666666666554210 111 12444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
.+..+|...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.1e-05 Score=66.10 Aligned_cols=98 Identities=9% Similarity=-0.060 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...|++.++.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34556666677777777777777777777654 446667777777777777777777777777765432 466666777
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+|...|++++|+..|++..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777776664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4e-05 Score=61.89 Aligned_cols=110 Identities=10% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPN----LFV 299 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~ 299 (546)
...|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...|++..+... .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567788888999999999999999988765 56788889999999999999999999998876432 122 677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 339 (546)
|..+..+|...|++++|...|++..+. .|+......+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 888888899999999999999988874 35655444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-05 Score=60.76 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSL 303 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 303 (546)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+.... .+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34556677788888899999999998888765 567778888888888899999999999888875321 147778888
Q ss_pred HHHHHhc-CChhHHHHHHHHhhhCC
Q 009025 304 IQCYGKA-QRTDDVVRALNRLPELG 327 (546)
Q Consensus 304 i~~~~~~-g~~~~A~~~~~~m~~~~ 327 (546)
..+|... |++++|++.|++..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8888888 89999999888887643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-05 Score=62.61 Aligned_cols=91 Identities=13% Similarity=-0.009 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 311 (546)
+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+.... +...+..+..+|...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3344445555555555555554433 334445555555555555555555555555443321 3444445555555555
Q ss_pred ChhHHHHHHHHhhh
Q 009025 312 RTDDVVRALNRLPE 325 (546)
Q Consensus 312 ~~~~A~~~~~~m~~ 325 (546)
++++|+..|++.++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=4.3e-05 Score=77.78 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=67.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 34556666666666666665532 245666666666666666666666666666654 445666666666666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQC--YGKAQRTDDVVRALN 321 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 321 (546)
+|.+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777666654321 22333333333 566667777776666
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.1e-05 Score=61.67 Aligned_cols=91 Identities=9% Similarity=-0.024 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.. +-+...+..+...|...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 344555556666666666665554322 45555555566666666666666666655543 344555556666666666
Q ss_pred CHHHHHHHHHHHHH
Q 009025 277 KVSEAEAMFNEMLE 290 (546)
Q Consensus 277 ~~~~A~~~~~~m~~ 290 (546)
++++|...|++.++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.8e-05 Score=64.62 Aligned_cols=133 Identities=11% Similarity=-0.052 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----CHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----DSW 263 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~ 263 (546)
++..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++......... ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555566666666655554432100 01 13555566666666666666666666543210001 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5556666677777777777777665532 1100 134456666777777777777777776653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.1e-05 Score=65.14 Aligned_cols=131 Identities=18% Similarity=0.056 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----H
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----W 191 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~ 191 (546)
.++..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777766543100 11 124555556666666666666666555432100 01 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
.++..+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444555555555555555555544321 100 01223344444444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=8.1e-05 Score=75.34 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...|..+..+|.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.++.... +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566666677777777777777777766654 456666777777777777777777777776664321 3455666666
Q ss_pred HHHhcCChhHHHH-HHHHhh
Q 009025 306 CYGKAQRTDDVVR-ALNRLP 324 (546)
Q Consensus 306 ~~~~~g~~~~A~~-~~~~m~ 324 (546)
++.+.|+.+++.+ .+..|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 6666666665543 444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0011 Score=68.75 Aligned_cols=169 Identities=10% Similarity=-0.043 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009025 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 275 (546)
..++|++.++++...+.. +..+|+.--..+...|+ ++++++.++.+.+.. +.+..+|..-.-.+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 345678888887776543 55667666666666666 788888888888765 66778888777777788
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC-------
Q 009025 276 G--KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT------- 345 (546)
Q Consensus 276 g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------- 345 (546)
| +++++.+.++++.+...+ |...|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887654 7788887777777777 788888888888875422 455666555555442
Q ss_pred -------CH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc
Q 009025 346 -------PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379 (546)
Q Consensus 346 -------g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 379 (546)
+. +++.+.+..+...+|....++..+...+...+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 33 78888888888888888888877776665544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=62.50 Aligned_cols=62 Identities=21% Similarity=0.106 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..|..+..+|.+.|++++|...+++.++.... +...|..+..+|...|++++|+..|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44555555555555555555555555543321 344555555555555555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=72.97 Aligned_cols=131 Identities=8% Similarity=-0.056 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------WNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
...|..+...+.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566677777777777777777777766321111 5788889999999999999999999998875
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA-MFNEML 289 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 289 (546)
.. +...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++.+ ++..|.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 68889999999999999999999999998865 5567788888888888888877664 444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00049 Score=55.44 Aligned_cols=89 Identities=13% Similarity=-0.021 Sum_probs=41.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITIC 272 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~ 272 (546)
..+.+.|++++|...|+++.+.... +. ..+..+..++...|++++|...|++..... +.+ ...+..+..+|
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 3444455555555555554443211 11 244444445555555555555555544432 112 33444445555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009025 273 SCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~ 290 (546)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00025 Score=57.18 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS---WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLI 304 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li 304 (546)
..+...+...|++++|...|+++.+.. +.+. ..+..+...+...|++++|...|++..+...... ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566778888888888888887754 2233 4777788888888888888888888887543211 56677778
Q ss_pred HHHHhcCChhHHHHHHHHhhhC
Q 009025 305 QCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.+|...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.8e-05 Score=63.25 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=7.0
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~ 250 (546)
+..++...|++++|+..|+
T Consensus 67 l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3333333333333333333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00017 Score=70.72 Aligned_cols=121 Identities=9% Similarity=0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEK---------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (546)
+..+...|.+.|++++|++.|++..+. --+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 344444555555555555555554431 001134567777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
+.+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777764322 4555666666666555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.3e-05 Score=61.04 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 204 ARYGEDTLSVYREMKEKG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
.|++++|+..|++..+.+ -+-+...+..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 467777777777777653 12245667777778888888888888888877765 45677777788888888888888
Q ss_pred HHHHHHHHHc
Q 009025 282 EAMFNEMLEA 291 (546)
Q Consensus 282 ~~~~~~m~~~ 291 (546)
...|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00021 Score=60.58 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34677777888888888888888888887765 567778888888888888888888888887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.84 E-value=5.8e-05 Score=76.79 Aligned_cols=118 Identities=9% Similarity=-0.027 Sum_probs=86.1
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.+.+.|++++|+..|++..+... -+..+|..+..+|.+.|++++|++.|++..+.. +-+...|..+..++.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44478899999999998887642 267888888899999999999999999888874 3467788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRA--YGRARYGEDTLSVYR 215 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~ 215 (546)
|.+.|++..+... .+...+..+..+ +.+.|++++|+++++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877532 133344444444 777788888888877
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0015 Score=67.76 Aligned_cols=174 Identities=6% Similarity=-0.010 Sum_probs=139.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
.-++|++.++++.+.. +-+..+|+.--.++...|+ ++++++.++.+.+... -+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 3467899999998874 3355677777777766666 8999999999988643 37788888888888888
Q ss_pred --ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-------
Q 009025 206 --YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR------- 275 (546)
Q Consensus 206 --~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~------- 275 (546)
++++++++++++.+.... +..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccc
Confidence 679999999999988654 7888998888888888 8999999999998876 67888888877776663
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 276 -------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 276 -------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
+.++++.+.+++....... |...|+.+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999998876543 67888888888888777554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.5e-05 Score=71.55 Aligned_cols=95 Identities=9% Similarity=-0.026 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC- 306 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~- 306 (546)
.|..+..+|.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+.... +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 44445555555555555555555554433 334455555555555555555555555554432111 22223322222
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
....+..+++..+|..|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 1223444555555555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00025 Score=69.46 Aligned_cols=123 Identities=7% Similarity=-0.058 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN---------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 222 (546)
.+..+...+.+.|++++|++.|++.++. --+.+..+|..+..+|.+.|++++|++.+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3555566666666666666666666541 0112456778888888888999999988888887643
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 283 (546)
-+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++.+
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 267788888888888999999999988888764 4567777777777777776666544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.9e-05 Score=71.44 Aligned_cols=151 Identities=11% Similarity=-0.026 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...|.+.|++++|+..|++..... |+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 3456667777788888888888888877652 23221 223333444332221 136788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcC-CH-
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQT-PK- 347 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~-g~- 347 (546)
+|.+.|++++|...|++.++... .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+....... +.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887643 2678888999999999999999999999876 345543 333333332332 33
Q ss_pred HHHHHHHHHHHHcCCCh
Q 009025 348 EELGKLVECVEKSNSKL 364 (546)
Q Consensus 348 ~~a~~~~~~~~~~~~~~ 364 (546)
+++.+.+..+....|..
T Consensus 316 ~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhhCCCCCC
Confidence 77777888887766643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00048 Score=57.62 Aligned_cols=59 Identities=15% Similarity=-0.018 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQL------S-----VTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.....+.+.|++++|+..|++..+..... + ...|+.+..++.+.|++++|+..+++.++
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455555555555555554432110 1 12444444555555555555555444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0015 Score=53.75 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHHh
Q 009025 240 GYTDEAFEIFEDMKS 254 (546)
Q Consensus 240 g~~~~A~~~~~~m~~ 254 (546)
+++++|.++|++..+
T Consensus 111 ~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 111 KNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 333334333333333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00063 Score=56.89 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSW-----TFSSMITICSCRGKVSEAEAMFNEMLEA---- 291 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 291 (546)
...+......+.+.|++++|+..|++..+.....| +.. .|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34556667778889999999999998887542000 232 7888888888888888888888887764
Q ss_pred -CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 292 -GFEPN-LFVL----TSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 292 -~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+.|+ ...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11344 4556 6777777777777777777777653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.002 Score=52.89 Aligned_cols=111 Identities=10% Similarity=-0.092 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEA 245 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 245 (546)
+++++|.+.|++..+.|. ++.. |..+|...+.+++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666777777666652 2322 5556666666667777777776664 56666666666666 6677777
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 292 (546)
+++|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776644 45566666666766 677777777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00031 Score=71.18 Aligned_cols=125 Identities=12% Similarity=0.017 Sum_probs=76.2
Q ss_pred HHhcCChHHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-CHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKEK-----GM-QL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-----ENCQP-DSWTFSS 267 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~~~~ 267 (546)
+...|++++|+.++++..+. |. .| ...+++.|...|...|++++|+.++++.... |...| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677778887777766542 11 11 2356777777777778877777777765431 21122 2345777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 268 MITICSCRGKVSEAEAMFNEMLE-----AGFE-PN-LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
|...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++...+.+++|..+|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 1211 11 23344555566666777777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00026 Score=71.78 Aligned_cols=88 Identities=7% Similarity=-0.104 Sum_probs=43.8
Q ss_pred HHHcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-C-CHHHHHH
Q 009025 131 YGTAGNFDGCLNVYEEMKAIG---VKP----NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-----GLS-P-NWNTYAS 196 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p-~~~~~~~ 196 (546)
+...|++++|+.++++.++.. +.+ ...+++.|..+|...|++++|+.++++.++. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334566666666666554320 111 1235555666666666666666655554431 110 1 1234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 009025 197 LLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=57.43 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-------LF 298 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 298 (546)
...|..+...+...|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.|++..+.. |+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3444555555555555555555555555543 3445555555555556666666666665555432 22 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 009025 299 VLTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~ 320 (546)
.+..+..++...|+.+.|+..|
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3444444444444444444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=57.47 Aligned_cols=90 Identities=8% Similarity=-0.005 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------HHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWT 264 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~ 264 (546)
...+..+...+.+.|++++|++.|++..+... .+...|..+..+|...|++++|++.|++..... +.+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 44555566666666666666666666665532 245666666666666666666666666666543 222 344
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 009025 265 FSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~ 283 (546)
+..+..++...|+.+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444555555554444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00055 Score=54.07 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
|+..|++..+... .+...+..+...|...|++++|+..|++..... +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444321 244455555555555555555555555555443 3344455555555555555555555555544
Q ss_pred H
Q 009025 290 E 290 (546)
Q Consensus 290 ~ 290 (546)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0019 Score=48.07 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 195 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
..+...|.+.|++++|+..|++..+... .+...+..+...+...|++++|.+.|++...
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333334444444444444444333321 1233333444444444444444444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00045 Score=57.70 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=76.4
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF----------DGCLNVYEEMKAIGVKPNMITYNNLLDTM 166 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 166 (546)
.|.+++++|++.++...+..+. ++..|+.+..++...+++ ++|+..|++.++.. +-+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3778899999999999987544 889999999999988765 48889998888874 23567888888888
Q ss_pred HhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 167 GRAK-----------RPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 167 ~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
...| ++++|++.|++.++. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8764 677788888877773 5665555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0022 Score=47.72 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...+..+...+...|++++|+..|++..... +.+...+..+...|.+.|++++|...|++..+.... +...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4556666667777777777777777776654 445666777777777777777777777776664321 3445555444
Q ss_pred HHH
Q 009025 306 CYG 308 (546)
Q Consensus 306 ~~~ 308 (546)
.+.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0005 Score=57.38 Aligned_cols=35 Identities=9% Similarity=-0.133 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
+.+++|.+.++...+.. +.+...|..+..++...+
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~ 50 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELS 50 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhc
Confidence 33444444444444433 334444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=52.06 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
+|++.|++..+.. +.+...+..+...|...|++++|...|++..+... .+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677888887765 56788899999999999999999999999887653 25778888889999999999999999887
Q ss_pred hh
Q 009025 324 PE 325 (546)
Q Consensus 324 ~~ 325 (546)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0015 Score=50.22 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
..+..+..+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|++.|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444433211 23344444444444444444444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0041 Score=47.61 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666666655543 33445555666666666666666666655543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.033 Score=53.29 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009025 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 338 (546)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++... +.|...||.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5677777777777777788888888888888765 6777777777778888888888888888776 45777776554
Q ss_pred HHHHhcC
Q 009025 339 LNVMTQT 345 (546)
Q Consensus 339 l~~~~~~ 345 (546)
-+.....
T Consensus 350 ~~l~F~s 356 (372)
T 3ly7_A 350 ENGIFQT 356 (372)
T ss_dssp HHSSSCC
T ss_pred hCceeec
Confidence 4444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0088 Score=45.30 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
..+.+.|++++|++.|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555666666665555543 33444 5555555555666666666666655553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.097 Score=56.65 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
...|..|...+.+.|+++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555555555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.061 Score=58.26 Aligned_cols=47 Identities=9% Similarity=-0.096 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455666555554322 144556666666666666666666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0079 Score=59.77 Aligned_cols=85 Identities=8% Similarity=-0.060 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHH
Q 009025 135 GNFDGCLNVYEEMKAI---GVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-----GL-SPN-WNTYASLLRA 200 (546)
Q Consensus 135 g~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~ll~~ 200 (546)
|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6788888888877542 11222 357888888888888888888888887642 32 122 4678888888
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~ 219 (546)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999888887764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.062 Score=51.41 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
.+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 355666666655555677777777777766653 55666666666666677777777777666653 35555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.011 Score=58.68 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEA-----GF-EPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.+++.|..+|...|++++|..++++.++- |. .|+ ..+++.|...|...|++++|..+|++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45555666666666666666666555431 21 122 2345666666666666666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0092 Score=45.18 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=32.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
..+.+.|++++|++.|++..+.... +.. .|..+..+|...|++++|++.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455556666666666665554321 344 5555666666666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.016 Score=57.54 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=49.9
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 009025 238 DVGYTDEAFEIFEDMKSS--ENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA-----G-FEPN-LFVLTSLI 304 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~--~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li 304 (546)
+.|++++|+.++++..+. ....++ ..+++.|...|...|++++|+.++++.++- | -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 456666666666665532 111222 345666666666677777776666665531 1 1222 34566666
Q ss_pred HHHHhcCChhHHHHHHHHhh
Q 009025 305 QCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~ 324 (546)
..|...|++++|..++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.042 Score=54.54 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=66.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-CHHH
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKG---MQL----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-----ENCQP-DSWT 264 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~ 264 (546)
+.-+.+.|++++|+.++++..+.. +.+ ...+++.+...|...|++++|+.++++.... |...| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444557788888888888877531 111 2467888888888888988888888876532 22133 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999888887664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.85 Score=38.45 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=19.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 147 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 147 (546)
+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444444444444332 14444444444444444444444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=1 Score=37.98 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=20.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
+.|+++.|.++.+++ -+...|..|.......|+++-|++.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444444444444333 13444444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.41 Score=35.71 Aligned_cols=46 Identities=4% Similarity=-0.109 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
++|..++++..+.... +......+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443221 334444444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.11 Score=42.70 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEP--NLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
+.+-|.+....+ .++..+...+.-++++.+ +++++..+|++..+.+ .| +...+-.+.-+|.+.|++++|.+.
T Consensus 17 ~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 334444443333 344444444444555544 3445555555554432 11 223333344444555555555555
Q ss_pred HHHhhh
Q 009025 320 LNRLPE 325 (546)
Q Consensus 320 ~~~m~~ 325 (546)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.15 Score=38.16 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGY---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
|...+..+..++...++ .++|..+|++..... +-+......+...+.+.|++++|...|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 455555555555543 34444555555555555555555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.28 Score=45.04 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CC
Q 009025 242 TDEAFEIFEDMKSSENCQPD---SWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-QR 312 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~ 312 (546)
...|...+++..+.. |+ ...|..|...|.+ -|+.++|.+.|++.++.+..-+..++....+.++.. |+
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456777777777653 44 5677788888877 488888888888888755433467777777777774 88
Q ss_pred hhHHHHHHHHhhhCCCC--CCHHHHH
Q 009025 313 TDDVVRALNRLPELGIT--PDDRFCG 336 (546)
Q Consensus 313 ~~~A~~~~~~m~~~~~~--p~~~t~~ 336 (546)
.+++.+.+++.+..... |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888888876655 5544333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.36 Score=36.77 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
..+..+..+|.+.|++++|..++++..+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.21 Score=38.11 Aligned_cols=65 Identities=9% Similarity=-0.079 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+...+..|...+.+.|++..|...|+...+.- -.+...++..|..++.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555566666666667777666666654420 012344555555556666666666666655554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=1.5 Score=34.83 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=82.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. .|. ..+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45566666666665542 23444444444333334444444444333221 111 245666666655
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 214 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
+-.+-. +....+..+..+...|+-|.-.+++.++.... +|+......+..+|.+.|+..+|.+++.+..+.|+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 544322 34556667777788888888888888864433 67777888888888888888888888888887776
Q ss_pred C
Q 009025 294 E 294 (546)
Q Consensus 294 ~ 294 (546)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.44 Score=39.16 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR---YGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
+++-|.+..+.|. ++..+.-.+.-++++.+ +.++++.+|++..+.+ .| ....+-.+.-+|.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444333 34444444455555554 3445555555555442 11 2233334444555556666666666
Q ss_pred HHHHhC
Q 009025 250 EDMKSS 255 (546)
Q Consensus 250 ~~m~~~ 255 (546)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555553
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.11 Score=37.94 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=50.0
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009025 442 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWFL 520 (546)
Q Consensus 442 ~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~l~~~f~~~~~~~G~~~ 520 (546)
.+++|++...+|...+..++.............+ .+.|+||.|.|+... .-++..+...|.+-.-.|. ..|.|.+.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~-~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--e~n~G~l~ 78 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPGCLK 78 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCC---------CHHHHHHHHHHHTTCCEE--EEETTEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCce-EEEEEECCCCCCCCCcchHHHHHHHHHHhCCCcee--eCCCEEEE
Confidence 3689999999999998888766543222212233 588999999998542 2389999999998775554 34888886
Q ss_pred E
Q 009025 521 T 521 (546)
Q Consensus 521 ~ 521 (546)
.
T Consensus 79 V 79 (82)
T 3fau_A 79 V 79 (82)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.4 Score=36.00 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=57.4
Q ss_pred eeecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009025 441 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWF 519 (546)
Q Consensus 441 ~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~l~~~f~~~~~~~G~~ 519 (546)
..+++|++....|...+..++.............+ .+.|+||.|.|+... .-|+..+...|.+..-.|. ..+.|.+
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~-~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--egg~Ga~ 85 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPGCL 85 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCS-EEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--CCSTTCE
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccc--cCCCcEE
Confidence 35799999999999999988876653333222233 689999999998654 3489999999999776653 3467777
Q ss_pred EE
Q 009025 520 LT 521 (546)
Q Consensus 520 ~~ 521 (546)
+.
T Consensus 86 ~V 87 (96)
T 2d9i_A 86 KV 87 (96)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.66 Score=42.59 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhCCCccC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CC
Q 009025 101 NVEMAFGLYDRARNEKWRID---PNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-KR 171 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~ 171 (546)
.+..|+.++++..+. .|+ -..|..|...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 455666666666664 233 44677777777773 77777777777777653211356666666666663 77
Q ss_pred hhHHHHHHHHHHHCCCC--CCHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLS--PNWNTYA 195 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~--p~~~~~~ 195 (546)
.+++.+.+++.+..... |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 77777777777776544 5443333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.23 E-value=1.6 Score=35.54 Aligned_cols=102 Identities=9% Similarity=0.089 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHCC
Q 009025 120 DPNAFSTLIKLYGTAGNF------DGCLNVYEEMKAIGVKPNMI-TYNNLLD------TMGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~-~~~~ll~------~~~~~g~~~~a~~~~~~m~~~g 186 (546)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+. .+...+|.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 666676666666666776 6677777766653 344320 0000000 0122356666666666665532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009025 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223 (546)
Q Consensus 187 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 223 (546)
-.- ...|......-.+.|+++.|.+++...+..+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 445555555556666666666666666665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.12 E-value=9.2 Score=41.35 Aligned_cols=251 Identities=10% Similarity=-0.007 Sum_probs=139.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHHHh
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV--K-----PNMITYNNLLDTMGR 168 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~ll~~~~~ 168 (546)
..|+.++++.+++.....+...+.. .-..+.-+....|..+++.+++.......- . +....-.++.-+++-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 5677788888777665421012333 333444455566766678887777654310 0 111122223333333
Q ss_pred cCC-hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH--HHHHhcCC
Q 009025 169 AKR-PWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL--AMCADVGY 241 (546)
Q Consensus 169 ~g~-~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~~~~~~g~ 241 (546)
.|. -+++.+.+..++... +.. .--+|...|.-.|+.+....++..+.+.. +......+. -++...|+
T Consensus 466 ~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 343 245566666665532 222 12233344556788787788887776542 233333333 44457899
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTFS---SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 318 (546)
.+.+..+++.+.... .|.. -|. ++.-+|+..|+.....+++..+.... ..++...-.+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~--dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASD--ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCS--CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCC--CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 999999998888643 2322 232 34556778889888888998888641 1123323333334445677777778
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHHH
Q 009025 319 ALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEK 359 (546)
Q Consensus 319 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~a~~~~~~~~~ 359 (546)
++..+.+.+ .|...--..+.-+....|. .++...+..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 877666543 4444433344444444444 778887777764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.85 Score=48.20 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCC-cCH----
Q 009025 160 NNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY-GEDTLSVYREMKEK------GMQ-LSV---- 226 (546)
Q Consensus 160 ~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~------g~~-~~~---- 226 (546)
..++..+...++ .+.|..+|+++.+.....+.....++|..+.+.++ --+|.+++.+..+. ... .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344454555555 47788888888775322222223334444433332 22455555444321 111 111
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 227 ------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 227 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
.....=...|...|+++.|+++-++....- +-+..+|..|...|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222355667888999999988888753 556888999999999999999998888776
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.89 E-value=11 Score=37.35 Aligned_cols=190 Identities=7% Similarity=0.055 Sum_probs=109.2
Q ss_pred cCCHHHHHHHHHHHHh-----CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----Hh
Q 009025 99 AGNVEMAFGLYDRARN-----EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTM----GR 168 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~ 168 (546)
.|+++.|++.+-.+.+ .+..-.......++..|.+.|+++...+.+..+... |..+.. -..++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3678888877765553 223445677888999999999999988877766543 322222 22333322 22
Q ss_pred cCChhHH--HHHHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcC---HHHHHHHHHH
Q 009025 169 AKRPWQV--KTIYKEMTD--NG-LSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLS---VTLYNTLLAM 235 (546)
Q Consensus 169 ~g~~~~a--~~~~~~m~~--~g-~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~ 235 (546)
....+.- ..+.+.... .| +-. .......|...|...|++.+|.+++..+... |.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2322221 111111110 01 111 1233456777888888888888888877532 21111 2456666777
Q ss_pred HHhcCCHHHHHHHHHHHHh---CCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKS---SENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~---~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
|...+++..|..+++++.. .....|+ ..-+...+..+...+++.+|...|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888888777532 1111222 23456667777777888887777766653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.13 E-value=4.9 Score=32.03 Aligned_cols=141 Identities=12% Similarity=0.028 Sum_probs=82.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 245 (546)
..-.|..+++.++..+.... .+..-||.+|--....-+-+-..++++.+-. ..|. ...|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHH
Confidence 34456777777777776653 2455566555544444454444444444322 1222 123444444
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
...+-.+ ..+..-+...++.+...|+-+.-.+++..+.. +-.|+....-.+..+|.+.|+..+|.+++.+.-+
T Consensus 81 i~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444333 22334455666777777777777777777533 2346677777777888888888888888877777
Q ss_pred CCCC
Q 009025 326 LGIT 329 (546)
Q Consensus 326 ~~~~ 329 (546)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.02 E-value=1.9 Score=35.04 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
+++++|.++|+.+.+.. +--...|......-.+.|++..|.+++.+.+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~h--KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC--KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHC--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56777777777775542 3336666666666667777777777777777665543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.95 E-value=2.3 Score=33.47 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCH-HH
Q 009025 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD---VVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 276 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~-~~ 349 (546)
..+..+.+-|.+....|. ++..+-..+..++.++....+ ++.+++++.+.+ .| .....-.+.-++.+.|+ ++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555555544443 566666666666666665554 666666666542 12 11233345556666666 77
Q ss_pred HHHHHHHHHHcCCChhHH
Q 009025 350 LGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~ 367 (546)
|.+.++.+.+..|.+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 777777777777765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.90 E-value=2.5 Score=33.34 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
|.-++.+.|++++|.++++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444455555555555555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.69 E-value=6 Score=42.74 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHHhcC
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF-VLT---SLIQCYGKAQ 311 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~---~li~~~~~~g 311 (546)
+.-.|+-+....++..+.+.. .-+..-+..+.-++...|+.+.+..+++.+... .+.. -|. ++.-+|+..|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 334566666666666655432 112222223333344667777777777776652 2222 222 2334566667
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHH--HHhcCCH-HHHHHHHHHHHHcCCChhH--HHHHHHHhhhhhcchHHHHH
Q 009025 312 RTDDVVRALNRLPELGITPDDRFCGCLLN--VMTQTPK-EELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFKKEAT 386 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~g~-~~a~~~~~~~~~~~~~~~~--~~~~L~~~~~~~g~~~~~A~ 386 (546)
+.....+++..+.+. ++..+-...+- ++...|. +.+.++++.+.+....... +.-.||..+...+ ..++.
T Consensus 575 n~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~~ai 649 (963)
T 4ady_A 575 NNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQSAI 649 (963)
T ss_dssp CHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CHHHH
T ss_pred CHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cHHHH
Confidence 766666677776643 23322222222 3333444 4444444433332221111 1133444333333 25666
Q ss_pred HHHHhcccCcc
Q 009025 387 ELFNSISKDVK 397 (546)
Q Consensus 387 ~~~~~~~~~~~ 397 (546)
+.+..+..+++
T Consensus 650 d~L~~L~~D~d 660 (963)
T 4ady_A 650 DVLDPLTKDPV 660 (963)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHccCCC
Confidence 66666655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.48 E-value=7.7 Score=41.00 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCCCCHH-
Q 009025 193 TYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSS------ENCQPDSW- 263 (546)
Q Consensus 193 ~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~~~~~~- 263 (546)
....++..+...++ .+.|..+|+++......-+......+|..+...+ +--+|.+++.+..+. .....+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666666 5889999999988743222222333444433333 223455555554321 10012211
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 264 ---------TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 264 ---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
....=.+.+...|+++.|+++-++....-. -+..+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112224457789999999999999987532 258899999999999999999999998874
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.30 E-value=14 Score=34.56 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHHCCCCCCHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV----KTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...| .-+++-+.+.++++|.....-|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566667888999999998865422 122334444333 33345555667888888888888
Q ss_pred HHHHhcCChH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 199 RAYGRARYGE-DTLSVYREMKE----KG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 199 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+.....-+ .=.++.++++. .| ..-|......+...|.+.+++.+|+..|- . |. .+....|..++--
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~-~~s~~~~a~mL~e 176 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GT-KESPEVLARMEYE 176 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SC-TTHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cC-CchHHHHHHHHHH
Confidence 8887665422 22334444432 22 33467778888899999999999988883 2 31 3334666555554
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
+...+...++- ...-.+ +-.|.-.++...|..+|+.+.
T Consensus 177 w~~~~~~~e~d--------------lfiaRa-VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 177 WYKQDESHTAP--------------LYCARA-VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTSCGGGHH--------------HHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCccHH--------------HHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 44443322221 111122 223455667777776665544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=2.1 Score=41.66 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHHHHHH
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-----ELGITPDDRFCGC 337 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~~~ 337 (546)
..++..+...|+.++|...+..+..... .+...|..+|.+|.+.|+..+|++.|+++. +.|+.|...+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445556666666666666666654332 255566666666666666666666666553 3477777765443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.69 E-value=16 Score=34.27 Aligned_cols=25 Identities=4% Similarity=-0.137 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 402 NCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
.-.+--|.-.|+...|..+|+...+
T Consensus 191 aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 191 ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344456677788888777766553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=2.3 Score=41.24 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYN 230 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 230 (546)
+...++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34557778888999999998888887753 45788999999999999999999999987653 48998876543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=85.28 E-value=0.011 Score=58.08 Aligned_cols=261 Identities=11% Similarity=0.032 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
.+.+|..|..+..+.++..+|++-|-+ .-|...|..++.++.+.|.+++-.+.+...++..- +...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 556788888888888888888776522 23556788888888899999888888877666532 3445567888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+|++.++..+-++++. .|+..-...+.+-|...|.++.|.-+|..+..-. -|...+.+.|++.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a----------kLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG----------RLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT----------TTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH----------HHHHHHHHHHHHH
Confidence 8988888766444332 2566666777888888888888877777654321 1222333444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
.|.+.-++ .-++.||-.+-.+|...+++.-|.-.--.++ +.||. ...++.-|...|. ++...+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44332211 1244555555556666655555444333332 11111 1123444455555 55555555554
Q ss_pred HcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCc----------cchhhHHHHHHHHhcCCHHHHH
Q 009025 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV----------KKAYCNCLIDLCVNLNLLENAC 418 (546)
Q Consensus 359 ~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~ 418 (546)
........+++-|+..|++-. .++-.+.++..-.+- ....|.-++-.|.+-.++|.|.
T Consensus 257 glErAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCCchhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 444444445555555555543 233333333222111 2336888888888888887664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.05 E-value=4 Score=30.49 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
.-+..+-++.+....+.|+..+..+.+++|-+.+++..|.++|+.++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444445554445555555555555555555555555555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.98 E-value=23 Score=39.82 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=24.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 182 (546)
++..+...+.++-+.++.... +-+....-.+..++...|++++|.+.|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444455555555554443322 123333333445556666666666666443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.68 E-value=28 Score=32.30 Aligned_cols=20 Identities=10% Similarity=-0.102 Sum_probs=13.3
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 009025 406 DLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~m~ 425 (546)
--|.-.|+...|..+|+...
T Consensus 196 L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 34556677777777777654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.72 E-value=13 Score=27.73 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555555555566666666666666666666666666655543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.01 E-value=44 Score=32.80 Aligned_cols=189 Identities=10% Similarity=0.116 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----Hhc
Q 009025 135 GNFDGCLNVYEEMKAI-----GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAY----GRA 204 (546)
Q Consensus 135 g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~~ 204 (546)
|+++.|++.+-.+.+. +..-+......++..|...++++...+.+..+.+. |.. ......+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 5677787777665432 23456777888999999999999988877766543 332 22233444333 223
Q ss_pred CChHHHH--HHHHHHHH--cC-CCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHH
Q 009025 205 RYGEDTL--SVYREMKE--KG-MQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITIC 272 (546)
Q Consensus 205 g~~~~A~--~~~~~m~~--~g-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~ 272 (546)
...+... .+.+.+.. .| +-. .......|...|...|++.+|.+++.++...-.-.-+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111110 11 111 2234566788899999999999999998643110112 34667788899
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 273 SCRGKVSEAEAMFNEMLE----AGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
...+++..|..+++++.. ....|+ ...+..++..+...+++.+|...|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999988753 222222 23467777888889999999988887753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.95 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.71 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.61 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.6 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.58 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.47 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.43 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.32 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.31 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.93 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 96.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.14 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.79 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.41 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.36 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.71 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.49 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6e-18 Score=165.60 Aligned_cols=324 Identities=13% Similarity=0.026 Sum_probs=265.5
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
-+.|++++|++.|+++.+..+ -++.++..+...|.+.|++++|+..|+++.+.. +-+..+|..+..++.+.|++++|.
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccc
Confidence 388999999999999988643 378899999999999999999999999998864 346779999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHH----------------------------------HHHHHhcCChHHHHHHHHHHHHcCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASL----------------------------------LRAYGRARYGEDTLSVYREMKEKGM 222 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~l----------------------------------l~~~~~~g~~~~A~~~~~~m~~~g~ 222 (546)
+.+....+.... +....... .......+....+...+.......
T Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 88 EHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-
Confidence 999998775432 22222222 222333344455555555555443
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009025 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302 (546)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 302 (546)
+-+...+..+...+...|++++|...+++..... +-+...|..+...+...|++++|...|++....+. .+...+..
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 242 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGN 242 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHH
Confidence 2256778888899999999999999999988765 56788899999999999999999999999987654 36778888
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcc
Q 009025 303 LIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 380 (546)
Q Consensus 303 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 380 (546)
+...+.+.|++++|+..|++..+. .| +..++..+..++...|+ ++|.+.++......|........++..+...|+
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC
Confidence 999999999999999999999874 34 45688889999999999 999999999999999998888999999999894
Q ss_pred hHHHHHHHHHhcc-cCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 381 FKKEATELFNSIS-KDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 381 ~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.++|++.|++.. ..| +..+|..+..+|.+.|++++|.+.|+++++.. |+
T Consensus 321 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~--P~ 371 (388)
T d1w3ba_ 321 -IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PT 371 (388)
T ss_dssp -HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TT
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 599999998854 344 45588999999999999999999999998754 66
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1e-16 Score=156.76 Aligned_cols=323 Identities=11% Similarity=0.056 Sum_probs=259.3
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 160 (546)
.|+++.+..... ..+.+.|++++|+..|+.+.+..+. +..+|..+..+|.+.|++++|+..+....+... .+...+.
T Consensus 29 ~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 105 (388)
T d1w3ba_ 29 EPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYI 105 (388)
T ss_dssp CTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccccccccccccccc-ccccccc
Confidence 455555544433 3445899999999999999886433 788999999999999999999999999887642 2322222
Q ss_pred HHHH----------------------------------HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 161 NLLD----------------------------------TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206 (546)
Q Consensus 161 ~ll~----------------------------------~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 206 (546)
.... .....+....+...+....... +-+...+..+...+...|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 184 (388)
T d1w3ba_ 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCc
Confidence 2222 2233344444555555555432 2356788888899999999
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286 (546)
Q Consensus 207 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 286 (546)
+++|...+++..+.... +...|..+...+...|++++|+..+++..... +.+...+..+...+.+.|++++|...|+
T Consensus 185 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 261 (388)
T d1w3ba_ 185 IWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998876433 67889999999999999999999999998876 6778889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 009025 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 365 (546)
Q Consensus 287 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~ 365 (546)
+..+.... +...|..+...|...|++++|++.|+..... ...+...+..+...+...|+ ++|.+.+++..+..|+..
T Consensus 262 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 339 (388)
T d1w3ba_ 262 RAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339 (388)
T ss_dssp HHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99886432 5788999999999999999999999998864 34567788899999999999 999999999999999998
Q ss_pred HHHHHHHHhhhhhcchHHHHHHHHHhcc-cCcc-chhhHHHHHHHHhcCC
Q 009025 366 YVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK-KAYCNCLIDLCVNLNL 413 (546)
Q Consensus 366 ~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~-~~~~~~li~~~~~~g~ 413 (546)
.++..++..+...|+. ++|.+.|++.. ..|+ ..+|..|..+|.+.||
T Consensus 340 ~~~~~la~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 340 AAHSNLASVLQQQGKL-QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTTCC-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8889999999999965 99999998753 4554 5589999999988876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.7e-13 Score=126.87 Aligned_cols=231 Identities=11% Similarity=0.018 Sum_probs=182.5
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
+.....+.+.|++++|+..|+.+.+..+. +..+|..+..+|...|++++|+..|++..+.. +-+...|..+..++...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 33344455999999999999999987543 78899999999999999999999999998864 34677888999999999
Q ss_pred CChhHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSP--------------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLLA 234 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p--------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~ 234 (546)
|++++|.+.+++........ +.......+..+...+.+.+|.+.|.+..+... ..+..++..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999999988743110 001111223334455677888888888776432 235677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
.+...|++++|+..|++..... +-+..+|..+...|...|++++|.+.|++..+.... +...|..+..+|.+.|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999988765 557888999999999999999999999998875432 5778888999999999999
Q ss_pred HHHHHHHHhhh
Q 009025 315 DVVRALNRLPE 325 (546)
Q Consensus 315 ~A~~~~~~m~~ 325 (546)
+|+..|++.++
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.4e-13 Score=128.46 Aligned_cols=235 Identities=12% Similarity=0.041 Sum_probs=172.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...|++.++... -+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 34556889999999999999999874 33578999999999999999999999999988542 36788888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCc--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 206 YGEDTLSVYREMKEKGMQL--------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
++++|.+.+++........ +.......+..+...+.+.+|.+.|.+.........+...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999999987653210 00111122334445566777888887766543224466777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HH
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~ 349 (546)
+...|++++|...|++....... +...|..+...|...|++++|++.|++..+. .| +...+..+..+|.+.|+ ++
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888887765432 5677778888888888888888888887763 34 34567777777777777 77
Q ss_pred HHHHHHHHHHcCCChh
Q 009025 350 LGKLVECVEKSNSKLG 365 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~ 365 (546)
|...|++..+..|+..
T Consensus 259 A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 259 AVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCCcCh
Confidence 8777777766655443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.7e-09 Score=101.92 Aligned_cols=215 Identities=7% Similarity=0.062 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
..+|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..++..++.. +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 5678888888899999999999999999874 345668888888888876 5899999999988864 236889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-- 277 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-- 277 (546)
.+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|++.|+++.+.+ +-+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccc
Confidence 999999999999999999987543 78899999999999999999999999999876 6678888888777776665
Q ss_pred ----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHH
Q 009025 278 ----VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVM 342 (546)
Q Consensus 278 ----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~ 342 (546)
+++|.+.+.+.++.... +...|+.+...+.. ...+++...++...+....+ +...+..+...+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 56788888887775532 66777766665544 34577777777776532222 233444444433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=4.5e-09 Score=98.68 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--------------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 167 (546)
.+.+..+|+++...- ..++..|...+..+.+. +..++|..+|++..+...+.+...|...+....
T Consensus 32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455677787777642 23566666555443322 234566677777665443445556666666667
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADVGYTDEAF 246 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~ 246 (546)
+.|+.+.|..+|+++++........+|...+..+.+.|+.+.|.++|+++.+.+.. +...|...... +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 77777777777777766433223445666677777777777777777776655432 23333333322 33356677777
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEP--NLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
.+|+.+.... +.+...|...+..+.+.|+++.|..+|++..... ..| ....|...+.--...|+.+.+..+++++
T Consensus 190 ~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766653 4556666777777777777777777777766543 222 2345666666556667777777766666
Q ss_pred hh
Q 009025 324 PE 325 (546)
Q Consensus 324 ~~ 325 (546)
.+
T Consensus 268 ~~ 269 (308)
T d2onda1 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=6.4e-09 Score=97.80 Aligned_cols=164 Identities=7% Similarity=0.058 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
..|+.+...+.+.+..++|+++++++++.. +-+...|+....++...| ++++|+..++...+.... +..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 355555555666666666666666666642 124555666666665554 366666666666655433 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--- 312 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--- 312 (546)
+.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|.+.|+++++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 666666666666666666654 455666666666666666666666666666664432 45555555444444333
Q ss_pred ---hhHHHHHHHHhhh
Q 009025 313 ---TDDVVRALNRLPE 325 (546)
Q Consensus 313 ---~~~A~~~~~~m~~ 325 (546)
+++|+..+.+.++
T Consensus 199 ~~~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIK 214 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHH
Confidence 3344444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=6.2e-08 Score=91.79 Aligned_cols=275 Identities=9% Similarity=-0.057 Sum_probs=169.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPN----WNTYAS 196 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ 196 (546)
.....+...|++++|+.+|++..+.....+ ...++.+..++...|++++|...|++..+... .++ ...+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344556677888888888887766521111 23566677777788888888888777654210 011 234556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCCHHHHH
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEK----GMQ--L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPDSWTFS 266 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~ 266 (546)
+...+...|++..+...+...... +.. + ....+..+...+...|+++.+...+........ ......++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 667777888888888877765431 111 1 123455666777888888888888877665321 022344556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---HHHHHH
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEA--GFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---DRFCGC 337 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ 337 (546)
.+...+...++...+...+.+.... ..... ...+..+...+...|++++|...+.+..+.....+ ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6677777888888888887766542 11111 23455566677888888888888887765322222 234445
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCc-cchhhHHHHHHHHhcCCHH
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKAYCNCLIDLCVNLNLLE 415 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 415 (546)
+..++...|+ ++|...++.+. ...+.....+ ....+..+..+|.+.|+++
T Consensus 257 la~~~~~~g~~~~A~~~~~~al----------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELN----------------------------ENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----------------------------HHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 5566666666 55555544332 2222222222 2346788889999999999
Q ss_pred HHHHHHHHHHhcc
Q 009025 416 NACKLLELGLTLE 428 (546)
Q Consensus 416 ~A~~~~~~m~~~g 428 (546)
+|.+.+++.++..
T Consensus 309 ~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 309 DAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.4e-08 Score=95.15 Aligned_cols=192 Identities=11% Similarity=0.124 Sum_probs=156.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..+..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|.+
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 44567899999999987645557788999999999999999999999999886433335689999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
+|+++++.+.. +...|...... +...|+.+.|.++|+.+.+.. +.+...|...+..+.+.|+++.|..+|++.....
T Consensus 156 i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99999987543 44444444433 345689999999999999863 3468899999999999999999999999988764
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 257 NCQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 257 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
...| ....|...+..-...|+.+.+.++++++.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2233 2457889999889999999999999988763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1.2e-08 Score=92.67 Aligned_cols=222 Identities=8% Similarity=-0.070 Sum_probs=152.1
Q ss_pred CCHHHHHHHHHHHHhCCCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 100 GNVEMAFGLYDRARNEKWRI---DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 100 g~~~~A~~l~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
++.+.|+.-+++........ ...+|..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 35667777777777642211 33477788899999999999999999998874 346789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
+.|+++++... -+..++..+..+|...|++++|++.|+...+.... +......+...+.+.+..+.+..+........
T Consensus 92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 99999998642 35678888999999999999999999999887532 55555555556666676666666666666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 009025 257 NCQPDSWTFSSMITICSCRGK----VSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 331 (546)
. +...+. ++..+..... .+.+...+...... .| ...+|..+...|...|++++|+..|++.+.. .|+
T Consensus 170 ~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 241 (259)
T d1xnfa_ 170 K---EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 241 (259)
T ss_dssp C---CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred h---hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC
Confidence 2 222222 2222222211 22222222211111 11 2345667888888999999999999988864 454
Q ss_pred H
Q 009025 332 D 332 (546)
Q Consensus 332 ~ 332 (546)
.
T Consensus 242 ~ 242 (259)
T d1xnfa_ 242 N 242 (259)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=9.3e-08 Score=90.49 Aligned_cols=266 Identities=12% Similarity=-0.035 Sum_probs=190.5
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPN----MITYNNLLD 164 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~ 164 (546)
..+...|++++|+.+|++..+.....+ ..++..+...|...|++++|+..|++..+... .++ ...+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 444589999999999999987532222 34677888999999999999999998865311 112 345666777
Q ss_pred HHHhcCChhHHHHHHHHHHH----CCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcCHHHHHHHH
Q 009025 165 TMGRAKRPWQVKTIYKEMTD----NGLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQLSVTLYNTLL 233 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~----~g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li 233 (546)
.+...|++..+...+..... .+... ....+..+...+...|+++.+...+...... +.......+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 88999999999998887654 22211 1245666778899999999999999988754 2223456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSEN-CQP----DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQ 305 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~ 305 (546)
..+...+++.++...+.+...... ... ....+..+...+...|++++|...+++........ ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 888899999999988877654211 011 12345667778899999999999998876543222 2455677888
Q ss_pred HHHhcCChhHHHHHHHHhhh----CCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 306 CYGKAQRTDDVVRALNRLPE----LGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
.+...|++++|...+++... .+..|+. .++..+..++...|+ ++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998763 2334433 356666777777777 777777766543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=8e-09 Score=98.11 Aligned_cols=264 Identities=11% Similarity=0.021 Sum_probs=155.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH----------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 133 TAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDT----------MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~----------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
+.+..++|++++++..+. .|+. ..|+..-.. +...|++++|+.+++..++.. +-+...|..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 334457888888888765 3543 344432222 222344677777777777653 23566666666666
Q ss_pred HhcC--ChHHHHHHHHHHHHcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 202 GRAR--YGEDTLSVYREMKEKGMQLSVTLYN-TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 202 ~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
...+ ++++|+..++++.+.... +...+. .....+...+.+++|+..++.+.... +-+...|..+...+.+.|++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCH
Confidence 5554 467888888887776432 455444 34456666788888888888877765 56777788888888888887
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~ 357 (546)
++|...+....+.. |+ ...+...+...+..+++...+....... .++...+..+...+...++ +++...+.+.
T Consensus 195 ~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77665555443310 11 1122333455566666776666665432 1222233334444444555 6666666666
Q ss_pred HHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCcc-chhhHHHHHHHH
Q 009025 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK-KAYCNCLIDLCV 409 (546)
Q Consensus 358 ~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~-~~~~~~li~~~~ 409 (546)
.+.+|....++..++.++...| ..++|.+.++... .+|+ ...|+.|...+.
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~-~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGG-GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhhCchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 6666666666666666666666 3467777666543 2443 235555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=6.7e-08 Score=87.65 Aligned_cols=201 Identities=9% Similarity=0.002 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
+|..+..+|.+.|++++|+..|++..+.... +..+|+.+..+|.+.|++++|++.|+++.+.. +-+..++..+..+|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHH
Confidence 4444455555556666666666555554322 45555555566666666666666666655543 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHH
Q 009025 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~a~~ 352 (546)
...|++++|.+.|++..+.... +......+..++.+.+..+.+..+..........+ ..+. ++..+...
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~------- 184 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGN------- 184 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTS-------
T ss_pred HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHH-------
Confidence 5666666666666555543321 22222222333333333333333333333211111 1111 01111000
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 009025 353 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 430 (546)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 430 (546)
....+ ..+.+...+..... .+ ...+|..|...|...|++++|...|++.+...
T Consensus 185 ----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 239 (259)
T d1xnfa_ 185 ----------------------ISEQT-LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 239 (259)
T ss_dssp ----------------------SCHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred ----------------------HHHHH-HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--
Confidence 00001 12222222221111 11 23367788999999999999999999988765
Q ss_pred cC
Q 009025 431 TD 432 (546)
Q Consensus 431 p~ 432 (546)
|+
T Consensus 240 p~ 241 (259)
T d1xnfa_ 240 VH 241 (259)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=7e-09 Score=98.54 Aligned_cols=263 Identities=8% Similarity=-0.037 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHH----------HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLY----------GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
..++|+.+++.+.+..+. +...|+..-..+ ...|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 348999999999986433 455665433332 23345789999999998764 446778888888877766
Q ss_pred C--hhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 171 R--PWQVKTIYKEMTDNGLSPNWNTYA-SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247 (546)
Q Consensus 171 ~--~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (546)
+ .+++...+.++.+.. +.+...+. .....+...+..++|+..++.+.+.+.. +...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 4 789999999998863 23566554 4457778889999999999999887654 78899999999999999998876
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
.++...... |+ ...+...+...+..+++...+........ ++...+..+...+...|+.++|+..+.+..+.
T Consensus 200 ~~~~~~~~~---~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 271 (334)
T d1dcea1 200 QGRLPENVL---LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPE- 271 (334)
T ss_dssp CCSSCHHHH---HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhHHhH---HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-
Confidence 666554421 11 22344456667888888888888876543 34556667777888889999999999988764
Q ss_pred CCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 328 ITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 328 ~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
.| +..++..+..++...|+ ++|.+.++.+.+.+|....++..|...+.
T Consensus 272 -~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 272 -NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp -CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 34 34677888889999999 99999999999999988888776655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=3.5e-06 Score=77.57 Aligned_cols=164 Identities=12% Similarity=-0.027 Sum_probs=86.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHH
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GL-SPNWNTYAS 196 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 196 (546)
....|...|++++|.+.|.++.+. +-.+ -..+|+.+..+|.+.|++++|.+.+++..+. |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345677777788887777776542 1111 1246666777777777777777776665432 10 001234444
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-----HHHH
Q 009025 197 LLRAYG-RARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-----SWTF 265 (546)
Q Consensus 197 ll~~~~-~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~ 265 (546)
+...|. ..|++++|++.|++..+. +..+ -..++..+...|...|++++|+++|+++.......+. ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 444553 346666666666655421 1111 1234555666666666666666666665543210110 0122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
..++..+...|+++.|...|++..+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444555666666666665554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=2.6e-06 Score=78.48 Aligned_cols=209 Identities=12% Similarity=0.133 Sum_probs=134.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHH
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDT 210 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A 210 (546)
++++|.++|.++ ...|...+++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 467777666553 56788889999999999888653 2111 235788889999999999999
Q ss_pred HHHHHHHHHc----CC-CcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCCC-CHHHHHHHHHHHHhcCCHH
Q 009025 211 LSVYREMKEK----GM-QLSVTLYNTLLAMCAD-VGYTDEAFEIFEDMKSS----ENCQP-DSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 211 ~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~~li~~~~~~g~~~ 279 (546)
.+.+++..+. |. .....++..+...|.. .|++++|++.|++..+. +. .+ -..++..+...|...|+++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHcChHH
Confidence 9999876542 11 1113456666666644 69999999999886532 21 11 2345778888999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CC---HHHHHHHHHHHhcCC--H
Q 009025 280 EAEAMFNEMLEAGFEPN-----L-FVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PD---DRFCGCLLNVMTQTP--K 347 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~-----~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~t~~~ll~~~~~~g--~ 347 (546)
+|..+|+++........ . ..+...+..+...|+++.|...|++..+.... ++ ......++.++.... .
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~ 255 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH
Confidence 99999998876432211 1 22344555677789999999999988764311 11 123455555555432 2
Q ss_pred -HHHHHHHHHHHHc
Q 009025 348 -EELGKLVECVEKS 360 (546)
Q Consensus 348 -~~a~~~~~~~~~~ 360 (546)
+++.+.|+.+.+.
T Consensus 256 ~~eai~~y~~~~~l 269 (290)
T d1qqea_ 256 LSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHhhc
Confidence 5555555444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5.8e-06 Score=70.81 Aligned_cols=83 Identities=7% Similarity=-0.009 Sum_probs=38.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 245 (546)
+...|+++.|++.|+++ .+++..+|..+..+|.+.|++++|++.|++.++.+.. +...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 34444555554444432 1234444444444555555555555555544444322 344444444444455555555
Q ss_pred HHHHHHHH
Q 009025 246 FEIFEDMK 253 (546)
Q Consensus 246 ~~~~~~m~ 253 (546)
++.|++..
T Consensus 90 ~~~~~kAl 97 (192)
T d1hh8a_ 90 IKDLKEAL 97 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=9e-06 Score=69.53 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.|+. ...+...|+++.|++.|+++. +|+..+|..+..++...|++++|++.|++.++.. +-+...|..+..+|.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4443 556678889999988887642 5778888888888999999999999999988864 236778888888899
Q ss_pred hcCChHHHHHHHHHHHHc
Q 009025 203 RARYGEDTLSVYREMKEK 220 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~ 220 (546)
+.|++++|++.|++....
T Consensus 82 ~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHh
Confidence 999999999888887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=8.1e-06 Score=67.46 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
...|.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..|++..+.. +-+..+|..++.+|...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCC
Confidence 34455556666666666655554322 45555555556666666666666666655543 3445555556666666666
Q ss_pred HHHHHHHHHHHHHc
Q 009025 278 VSEAEAMFNEMLEA 291 (546)
Q Consensus 278 ~~~A~~~~~~m~~~ 291 (546)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666655553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1e-05 Score=62.84 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=37.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
+.+.|++++|+.+|++.++.... +...|..+..+|...|++++|+..+++..+.+ +.+...|..+..++...|++++
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCHHH
Confidence 34444444444444444433211 33444444444444444444444444444433 3344444444444444444444
Q ss_pred HHHHHHHHHH
Q 009025 281 AEAMFNEMLE 290 (546)
Q Consensus 281 A~~~~~~m~~ 290 (546)
|...|++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=8.7e-06 Score=63.32 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=79.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 311 (546)
-...+.+.|++++|+.+|++..+.. +-+...|..+..+|.+.|++++|+..+++..+.+.. +...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 4566788899999999999988775 677888888889999999999999999988876543 7788888888899999
Q ss_pred ChhHHHHHHHHhhhCCCCCCHH
Q 009025 312 RTDDVVRALNRLPELGITPDDR 333 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~p~~~ 333 (546)
++++|+..|++..+ +.|+..
T Consensus 86 ~~~~A~~~~~~a~~--~~p~~~ 105 (117)
T d1elwa_ 86 RFEEAKRTYEEGLK--HEANNP 105 (117)
T ss_dssp CHHHHHHHHHHHHT--TCTTCH
T ss_pred CHHHHHHHHHHHHH--hCCCCH
Confidence 99999999988886 345543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=7e-06 Score=70.62 Aligned_cols=99 Identities=9% Similarity=-0.039 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 189 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
|+...+-.....|.+.|++++|+..|.+.++... -+...|+.+..+|.+.|++++|+..|++..+.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence 4455555556666666666666666666665532 256666666666666666666666666666543 3455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~ 290 (546)
..+|.+.|++++|...|++..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.9e-05 Score=65.12 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=62.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
..+.+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..|++.++.... +..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 3455666777777777777776653 235666777777777777777777777777665422 56677777777777777
Q ss_pred HHHHHHHHHHHHhCC
Q 009025 242 TDEAFEIFEDMKSSE 256 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~ 256 (546)
+++|...|++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777777776653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=0.0014 Score=58.34 Aligned_cols=220 Identities=13% Similarity=0.045 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYAS 196 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 196 (546)
+..+..|...+.+.|++++|++.|++..+.| +...+..|...|.. ..+...+...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4445555555556666666666666665544 34444445555443 345566666666655544 2333333
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 197 LLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 197 ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+..... ..+...+..|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L 148 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTIL 148 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhh
Confidence 3333322 3455566666666555542 2222222222222 3344555555555544 3344555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009025 269 ITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLLN 340 (546)
Q Consensus 269 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 340 (546)
...|.. ..+...+..+++...+.| +......+...|.. ..+.++|+..|.+..+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555554 344555666666655532 44444444444443 456677777777666654 3444444554
Q ss_pred HHhc----CCH-HHHHHHHHHHHH
Q 009025 341 VMTQ----TPK-EELGKLVECVEK 359 (546)
Q Consensus 341 ~~~~----~g~-~~a~~~~~~~~~ 359 (546)
.+.. ..+ ++|.++|++...
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHH
Confidence 4443 112 556666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=7.9e-06 Score=70.27 Aligned_cols=99 Identities=13% Similarity=-0.051 Sum_probs=77.1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009025 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303 (546)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 303 (546)
|+...+......|.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|++.++.... +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence 455666667778888888888888888877765 667788888888888888888888888888764322 46778888
Q ss_pred HHHHHhcCChhHHHHHHHHhhh
Q 009025 304 IQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+|.+.|++++|+..|++..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888887764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=0.0015 Score=58.13 Aligned_cols=213 Identities=13% Similarity=0.053 Sum_probs=158.0
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR--- 168 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--- 168 (546)
+-+.|++++|++.|++..+.| +...+..|...|.. ..++..|...++.....+ +......+...+..
T Consensus 12 ~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~ 85 (265)
T d1ouva_ 12 SYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQG 85 (265)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccccccc
Confidence 337899999999999998875 77777778888876 568999999999988765 44444555554443
Q ss_pred -cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----c
Q 009025 169 -AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----V 239 (546)
Q Consensus 169 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 239 (546)
..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...+..|...|.. .
T Consensus 86 ~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~ 159 (265)
T d1ouva_ 86 VSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTP 159 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcc
Confidence 4677889999999888764 3333334334432 455677788887776654 67778888888876 4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQ 311 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 311 (546)
.+...+..+++...+.| +......|...|.. ..++++|..+|.+..+.| +...+..|...|.+ ..
T Consensus 160 ~~~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 160 KDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSC
T ss_pred cccccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCcc
Confidence 56778888888888744 56677777777765 568999999999998875 56677777777765 34
Q ss_pred ChhHHHHHHHHhhhCC
Q 009025 312 RTDDVVRALNRLPELG 327 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~ 327 (546)
+.++|++.|++..+.|
T Consensus 233 n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLG 248 (265)
T ss_dssp CSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCc
Confidence 7889999999988766
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=1.1e-05 Score=62.10 Aligned_cols=84 Identities=8% Similarity=0.006 Sum_probs=36.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
+.+.|++++|+..|++....... +..+|..+..++.+.|++++|+..|++..+.. +.+...|..+...|...|++++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCCHHH
Confidence 34444444444444444443211 34444444444444444444444444444432 3334444444444444444444
Q ss_pred HHHHHHH
Q 009025 281 AEAMFNE 287 (546)
Q Consensus 281 A~~~~~~ 287 (546)
|.+.|++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=6.6e-06 Score=64.41 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK---VSEAEAMFNEMLEAGFEPN-LFVLTSLIQCY 307 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 307 (546)
+++.+...+++++|++.|++....+ +.+..++..+..++.+.++ +++|..+|+++...+..|+ ..+|..+..+|
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4444444555555555555555443 3444455555544444332 2234555554444322222 12344444555
Q ss_pred HhcCChhHHHHHHHHhhh
Q 009025 308 GKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 308 ~~~g~~~~A~~~~~~m~~ 325 (546)
.+.|++++|++.|+++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 555555555555555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=1.6e-05 Score=61.16 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
.+...+.+.|++++|+..|++..... +-+..+|..+..++.+.|++++|...|++..+.... +...|..+...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence 45667888999999999999998875 567889999999999999999999999998886543 688889999999999
Q ss_pred CChhHHHHHHHHhh
Q 009025 311 QRTDDVVRALNRLP 324 (546)
Q Consensus 311 g~~~~A~~~~~~m~ 324 (546)
|++++|++.|++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=0.00012 Score=60.76 Aligned_cols=123 Identities=13% Similarity=0.015 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+......+.+.|++++|+..|.+.+......+.. .+.-......+ ...+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~---------------~~~~~~~~~~~-------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF---------------SNEEAQKAQAL-------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC---------------CSHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc---------------chHHHhhhchh-------HHHHHHHHHHH
Confidence 445556667788888888888888776542101110 00000000000 01234444455
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLE 373 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~ 373 (546)
|.+.|++++|+..+++.++. .| +...+..+..++...|+ ++|...|+.+.+.+|+...+...+..
T Consensus 72 y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55555555555555555542 23 34445555555555555 55555555555555554444443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=3.3e-05 Score=60.24 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHhhhCCCCCCH-HHHHHHHHH
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELGITPDD-RFCGCLLNV 341 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~-~t~~~ll~~ 341 (546)
..+++.+...+++++|.+.|++.+..+.. +..++..+..++.+.++. ++|+.+|+++...+..|+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 46788889999999999999999987643 778888899999876554 5699999998875433432 367788999
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCChhHHHHHHH
Q 009025 342 MTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 372 (546)
Q Consensus 342 ~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~ 372 (546)
|.+.|+ ++|.+.++.+.+.+|+...+...+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 999999 9999999999999998877655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=0.0054 Score=56.22 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=75.6
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 172 (546)
...+-+.|.++.|..+|..+.. |..++..|.+.+++..|.+++.+. -+..+|..+..+|.+....
T Consensus 21 ~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 21 GDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 85 (336)
T ss_dssp --------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHH
Confidence 3344477777777777765532 456667777777777777776543 2455777777777766655
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
..+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 86 RLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 433 22222333455566677777777788887777777665332 345666777777777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=0.00022 Score=59.18 Aligned_cols=62 Identities=8% Similarity=-0.119 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
+|+.+..+|.+.|++++|+..++..++.... +..+|..+..+|...|++++|+..|++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4445555666666666666666666555322 5555666666666666666666666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00018 Score=56.46 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-----HHHHHHHH
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PN-----LFVLTSLI 304 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-----~~~~~~li 304 (546)
.+...|.+.|++++|++.|.+.++.+ +.+...|..+..+|.+.|++++|...++++++.... +. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543 345555555555566666666666655555432100 00 12444555
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+...+++++|+..|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555556666666666655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.001 Score=53.86 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
.+|+.+..+|.+.|++++|++.+++..... +.+..+|..+..++...|++++|...|++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 355566666667777777777777666654 4566666677777777777777777776666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.71 E-value=0.00042 Score=57.31 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
...|..+..+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|...|++.++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455556666666777777777777766654 456666666667777777777777777666664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.00028 Score=55.33 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=52.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-----SWTFSSMIT 270 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~li~ 270 (546)
.+...|.+.|++++|+..|.+.++.+.. +...|..+..+|.+.|++++|++.+++++....-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666555322 4556666666666666666666666665442100011 234555556
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009025 271 ICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+...+++++|...|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.66 E-value=0.0013 Score=53.17 Aligned_cols=125 Identities=10% Similarity=-0.018 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
...+..-...+.+.|++.+|+..|.+....- +... .. .+.... ..... ....+|+.+..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~-~~~~~~--~~~~~----~~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EW-DDQILL--DKKKN----IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TC-CCHHHH--HHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hh-hhHHHH--Hhhhh----HHHHHHhhHHHH
Confidence 3455666777888888888888888877541 1000 00 000000 00000 013467778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
|.+.|++++|++.++...+.+. .+..+|..+..++...|++++|+..|++..+.. +-+..+...+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l 141 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSY 141 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 9999999999999999887753 378889999999999999999999999988764 3344444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.64 E-value=0.00061 Score=56.21 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
.|+.+..+|.+.|++++|+..+++..... +.+..+|..+..+|...|++++|...|+++++.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555666666777777777777666654 556666666666777777777777777766654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.00087 Score=55.82 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
..+..+...+...|++++|+..++++.... +-+...|..++.+|.+.|+..+|++.|+++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445555666666666666666666666554 455666666666666666666666666655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.0014 Score=54.56 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-----ELGITPDDRFC 335 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~ 335 (546)
...+..+...+.+.|++++|...++++++.... +...|..++.+|.+.|+.++|++.|+++. +.|+.|...+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 356778899999999999999999999986653 78999999999999999999999999974 36899987653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00049 Score=56.89 Aligned_cols=129 Identities=6% Similarity=0.000 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
...+......+.+.|++++|++.|.++.+. ...............+ . +.+...|..+..+
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~~----~----~~~~~~~~nla~~ 86 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAKL----Q----PVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGGG----H----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHHh----C----hhhHHHHHHHHHH
Confidence 445666777888899999999999887642 0000011111111100 0 1134567777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
|.+.|++++|+..+.+.++... -+..+|..+..+|...|++++|++.|++..+.. +.+......+....
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 8999999999999999887753 367888889999999999999999999988865 45655555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.58 E-value=0.00074 Score=55.69 Aligned_cols=129 Identities=7% Similarity=-0.053 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI---GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
...+.-....+.+.|++.+|+..|++.... ....+. +. ......+ ....|+.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~----------------~~-~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE----------------KE-SKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH----------------HH-HHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch----------------hh-hhhcchh-------HHHHHHhH
Confidence 445666677777888888888887776532 000000 00 0011111 13356667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
..+|.+.|++++|+..++...+... .+..+|..+..+|...|++++|+..|+++.... +.+......+-....+.+
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence 7888889999999999998887653 378888888899999999999999999988765 456655555544443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=3.9e-05 Score=76.15 Aligned_cols=205 Identities=9% Similarity=-0.035 Sum_probs=107.9
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhc
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDP-NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT--MGRA 169 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~ 169 (546)
...+...|++++| |+++.... |+- ..++..- .+.+ ..+..+.+.++...+....++..-....+.. ....
T Consensus 27 a~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw~-~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~ 99 (497)
T d1ya0a1 27 AEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLWN-HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAAS 99 (497)
T ss_dssp SSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHHH-HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHHH-HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHH
Confidence 3444466777665 66666541 211 1122111 1111 2255677777777654333333222222212 2223
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
+.++.++..+....+.. .++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|+..|
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44455554444433322 2345677778888888999999988887766532 2356777888899999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 311 (546)
++..+.. +-+...|+.|...|...|+..+|...|.+.+... .|-..++..|...|.+..
T Consensus 176 ~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 176 RHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 9988875 5677899999999999999999999999988754 356777888877765543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.47 E-value=0.00029 Score=56.67 Aligned_cols=113 Identities=9% Similarity=0.001 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
.+.+++|++.|+...+... -+..++..+..+|.. .+.+++|+..|++..+.. +.+..+|..+..+|.
T Consensus 10 ~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHHH
Confidence 3445555555555555432 244455555544442 233466777777777654 556667777777666
Q ss_pred hcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 274 CRGK-----------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 274 ~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
..|+ +++|.+.|++..+. .|+...|..-+..+ .+|.+++.+..+.|
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 5443 45666666666653 34444444333332 34455555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.43 E-value=0.00046 Score=55.37 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=77.7
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA----------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 165 (546)
+-|.+.+++|+..|+...+..+. ++.++..+..+|... +.+++|+..|++..+.. +-+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 44778899999999999887543 888888888888754 44577888888888764 3466788888887
Q ss_pred HHhcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 166 MGRAKR-----------PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 166 ~~~~g~-----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
|...|+ ++.|.+.|++.++ +.|+...|...+..+ .+|.+++.+..+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 766543 4556666666665 345555555444443 23455555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.0003 Score=69.54 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=84.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
.+.++.|+..++...... .++...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|+..
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 455666665555444332 2455677888888899999999988877765521 235777889999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 214 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
|++..+.... +...|+.|...+...|+..+|...|.+..... +|...++..|...+.+..
T Consensus 175 y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 175 YRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHhh
Confidence 9999987533 67899999999999999999999999999876 788899999988876644
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.31 E-value=0.00015 Score=64.77 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=66.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 176 (546)
+.|++++|+..+++..+..+. |...+..+...|+..|++++|...|+...+. .|+ ...+..+...+...+..+++.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHH
Confidence 678888888888888776543 7778888888888888888888888887765 343 334433333332222222211
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
.-.......+-+++...+......+.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11000000011112233333445556666677776666666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.0002 Score=64.01 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.|++++|+..+++.++.. +-|...+..+...|+..|++++|.+.|+...+
T Consensus 9 ~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555554443 34444555555555555555555555555444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.15 E-value=0.016 Score=52.93 Aligned_cols=211 Identities=12% Similarity=0.095 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 188 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
.||..-...+.+.|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+. -+..+|..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~ 74 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKE 74 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHH
Confidence 35666666778888899999999999976532 566778888999999998888754 35668889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 347 (546)
+...+.+......| .+.......+......++..|-..|.+++.+.+++..... -..+...++-++..+++.+.
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~ 148 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP 148 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh
Confidence 99999888776553 2223334456666778999999999999999999987643 25577788899999999887
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccC-----------ccchhhHHHHHHHHhcCCHHH
Q 009025 348 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-----------VKKAYCNCLIDLCVNLNLLEN 416 (546)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~ 416 (546)
++..+.+.... ..-+...++ ..+...+ ..+++.-++..+... ++..-....++.+.+.++.+.
T Consensus 149 ~kl~e~l~~~s-~~y~~~k~~----~~c~~~~-l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 149 QKMREHLELFW-SRVNIPKVL----RAAEQAH-LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp HHHHHHHHHHS-TTSCHHHHH----HHHHTTT-CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHhcc-ccCCHHHHH----HHHHHcC-ChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHH
Confidence 55444443321 111222222 2222223 446666666555431 222233456677777777776
Q ss_pred HHHHHHHHHh
Q 009025 417 ACKLLELGLT 426 (546)
Q Consensus 417 A~~~~~~m~~ 426 (546)
.-++....++
T Consensus 223 ~~~~i~~yL~ 232 (336)
T d1b89a_ 223 YYRAIQFYLE 232 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.06 E-value=0.0052 Score=49.57 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-
Q 009025 233 LAMCADVGYTDEAFEIFEDMKSSENCQPD----------SWTFSSMITICSCRGKVSEAEAMFNEMLEA-----GFEPN- 296 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~- 296 (546)
...+.+.|++++|++.|++..+...-.|+ ..+|+.+..+|.+.|++++|...+++.+.. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445566777777777666542110111 346667777777777777777777766531 11122
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 297 ----LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 297 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
...++.+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456667777888888888888777653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.93 E-value=0.0068 Score=48.82 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=35.3
Q ss_pred HHHHHH--HHHHHHcCChHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009025 122 NAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGV-KPN----------MITYNNLLDTMGRAKRPWQVKTIYKEMT 183 (546)
Q Consensus 122 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 183 (546)
.+|..+ ...+.+.|++++|+..|++.++..- .|+ ...|+.+..++...|++++|.+.+++.+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 345544 3445566778888877777765310 111 2455556666666666666665555554
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.013 Score=41.23 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=57.5
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009025 442 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWFL 520 (546)
Q Consensus 442 ~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~l~~~f~~~~~~~G~~~ 520 (546)
.+++|++....|...+..++............ ...+.|+||.|.|+... .-+...+...|.+-.-.|.+ .|.|+++
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~-~~~l~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~e--~~~G~~~ 79 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCLK 79 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEEC--CSTTCEE
T ss_pred eEECCCCCHHHHHHHHHHHHHHHHHhhhhcCC-ceEEEEEECCCCCCCCCcchHHHHHHHHHHHCCCceec--CCCcEEE
Confidence 36899999999999998888765543322222 23589999999998654 34899999999987666654 4779887
Q ss_pred Ee
Q 009025 521 TT 522 (546)
Q Consensus 521 ~~ 522 (546)
..
T Consensus 80 V~ 81 (83)
T d2d9ia1 80 VM 81 (83)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.02 Score=41.46 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSE----NCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+...+.+.|++++|+..|++..+.. ...++ ..++..|..+|.+.|++++|.+.++++++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 34444445555555555554443210 00111 23444555555555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.028 Score=40.55 Aligned_cols=60 Identities=12% Similarity=-0.029 Sum_probs=30.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-----CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKG-----MQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.+...+.+.|++++|+..|++..+.. ..++ ..+++.+..+|.+.|++++|++.++++.+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 44445555555555555555444320 0111 344555555566666666666666655554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.89 E-value=0.14 Score=39.36 Aligned_cols=16 Identities=6% Similarity=0.279 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHHHCC
Q 009025 136 NFDGCLNVYEEMKAIG 151 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g 151 (546)
|+++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3445555555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.79 E-value=0.15 Score=39.05 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHhCC
Q 009025 101 NVEMAFGLYDRARNEK 116 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g 116 (546)
++++|+..|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5666666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.41 E-value=0.65 Score=34.46 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 282 (546)
.+++.......+-.+-. +....+..++.+...|+-+.-.++++++.+.+ +++......+..+|.+.|...++.
T Consensus 68 ~C~Nlk~vv~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~n 140 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDAT 140 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHH
Confidence 34444444444433211 33455666778888888888888888877765 678888888888888888888888
Q ss_pred HHHHHHHHcCCC
Q 009025 283 AMFNEMLEAGFE 294 (546)
Q Consensus 283 ~~~~~m~~~~~~ 294 (546)
+++.+..+.|+.
T Consensus 141 ell~~ACe~G~K 152 (161)
T d1wy6a1 141 TLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHHhHH
Confidence 888888887764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.87 E-value=2.8 Score=30.99 Aligned_cols=140 Identities=12% Similarity=0.024 Sum_probs=72.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
.-.|..++..+++.+.... .+..-||.+|--....-+-+...++++.+-.. .|. ...+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3455666666666665553 24455555554444444444444444433211 121 1122333332
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
..+-.+ ..+..-+...++.+.++|+-+.-.++++.+.+ +-+++....-.+..+|.+.|...++-+++.+.-+.
T Consensus 77 ~C~~~~------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 77 ECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 222222 12233445556666667777777777666554 33456666666777777777777777777776666
Q ss_pred CCC
Q 009025 327 GIT 329 (546)
Q Consensus 327 ~~~ 329 (546)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.41 E-value=2.7 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.011 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+-.|.-+|.+.|++++|.+.++.+++
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444455555555555554444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.36 E-value=1.1 Score=33.38 Aligned_cols=71 Identities=4% Similarity=-0.168 Sum_probs=47.8
Q ss_pred ccCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 009025 118 RIDPNAFSTLIKLYGTAG---NFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 191 (546)
.+.+.+--...-+++++. +.++++.+|++..+.+ +.+. ..+-.|.-+|.+.|+++.|.+.++.+++. .|+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n 106 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 106 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence 456666666666666654 4557888888877643 2232 45556777788888888888888888874 4543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.71 E-value=4.4 Score=28.28 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
.-++.+-++.+....+.|+..+..+.+++|-+.+++..|.++|+..+.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.49 E-value=6.6 Score=27.37 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444445545555556666666666666666666666666555543
|