Citrus Sinensis ID: 009260

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54

MLRRSILELSSRRRVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVFSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKPTREREKKRINLASV

cHHHHHHHccccccccHHHHHccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHHcccc

ccHHHHHHcccccccccccccccccccHcHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccEEEccEEEHEccccccccccccccccccccccHcEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHcccccccccccccHHHccccHHHHccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHcccccHHHHHHcHcccccEEEEEEccc

MLRRSILelssrrrvpRQIIAQLPSIISARKEYstasqknvspkpgptgkppesgsnfspiiFGATVVVGVGLIAYQNGYLDQYIDIEkekhssldsskfrkdkndvkddhhvaepvvfshsdeepktSISAVEQAMQsvephkdirqpealsktpvedqphlqdkveltpqdqtvavkekdaaensnksiesrepstsppvssegsvevessesksskekdenvqgtgilsqmsaasekdeqkafpqqsiiiedksenelsnsaespaslldayhlrDKIDEGIDKATEDFINVMEELnngylskdGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSslpeetryhGTETLlqlnqkptreREKKRINLASV

mlrrsilelssrrrvprqiiAQLPSIISARKEYStasqknvspkpgptgKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEkhssldsskfrkdkndvkddhhvaepvvfshsdeepKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQphlqdkveltpqdqtvavkekdaaensnksiesrepstsppvssegsvevessesksskekdenvqgTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKekyekelrdsrarelmRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLpeetryhgtetllqlnqkptrerekkrinlasv

MlrrsilelssrrrVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRkdkndvkddhhvAEPVVFSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIesrepstsppvssegsvevessesksskekdeNVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAIlekelkrerakaaaTIKSlqekmeeklrmeleqkeNEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKlalgalaledalSRGLPIQKEIDTLYTYLDGIEKdsvldlvlsslPEETRYHGTETLLQLNQKPTREREKKRINLASV

*********************************************************FSPIIFGATVVVGVGLIAYQNGYLDQYIDI****************************************************************************************************************************************************************************************LDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAA*********************************************************************************************AEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLP********************************

************************************************************IIFGATVVVGVGLIAYQNGYLDQYID*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETR**GTET*LQLNQKPTREREKKRINLASV

MLRRSILELSSRRRVPRQIIAQLPSIISAR***********************SGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVF**********ISAVEQAMQSVEPHKDIRQPEA***********LQDKVELTPQDQTVAV************************************************GTGILSQM************PQQSIIIEDKS**********PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME***********LKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQL******************

************RRV*****************************************NFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVA********************QAMQS**PHKDIR**************************************************************************************************************************SLL**YHLR*K******KA***FINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKPTREREKKRINLAS*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MLRRSILELSSRRRVPRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVFSHSDEEPKTSISAVEQAMQSVEPHKDIRQPEALSKTPVEDQPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFxxxxxxxxxxxxxxxxxxxxxELMRTEEAAILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKPTREREKKRINLASV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		539
255576188		638	conserved hypothetical protein [Ricinus	0.918	0.775	0.517	1e-127
224083763		654	predicted protein [Populus trichocarpa]	0.925	0.762	0.5	1e-114
296082466		668	unnamed protein product [Vitis vinifera]	0.948	0.764	0.5	1e-113
224096233		623	predicted protein [Populus trichocarpa]	0.884	0.765	0.513	1e-109
356511121		642	PREDICTED: uncharacterized protein LOC10	0.935	0.785	0.472	1e-107
359480840		671	PREDICTED: formation of crista junctions	0.918	0.737	0.471	1e-105
449451629		658	PREDICTED: uncharacterized protein LOC10	0.946	0.775	0.454	1e-104
356528505		646	PREDICTED: uncharacterized protein LOC10	0.946	0.789	0.456	1e-103
18420505		650	uncharacterized protein [Arabidopsis tha	0.923	0.766	0.470	1e-103
297797988		657	hypothetical protein ARALYDRAFT_490751 [	0.927	0.761	0.442	5e-99

>gi\|255576188\|ref\|XP_002528988.1\| conserved hypothetical protein [Ricinus communis] gi\|223531578\|gb\|EEF33407.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 273/528 (51%), Positives = 367/528 (69%), Gaps = 33/528 (6%)

Query: 23  LPSIISARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLD 82
           +PS++S RKE+ST+ Q+N SPK G   KPPES SN   ++ G+ +V G GL+AYQ+GYLD
Sbjct: 6   IPSLLSLRKEFSTSPQQNASPKAGSGSKPPESKSNLPKVVAGSAIVGGAGLLAYQSGYLD 65

Query: 83  QYIDIEKEKHSSLDSSKFRKDKNDVKDDHHVAEPVVFSHSDEEPKTSISAVEQAMQSVEP 142
           QYI  +++     +S++   D  DVKD     E +  + S+E  K     VEQ  Q V+ 
Sbjct: 66  QYIGKQQQ-----NSARNGIDYKDVKDTQISGEQLASTISEESVKLG-HDVEQTAQKVQT 119

Query: 143 HKDIRQPEALSKTP-------VE---------DQPHLQ--DKVE----LTPQDQTVAVKE 180
             D+ Q E   K         VE         D PH+Q  ++VE    + P +    ++E
Sbjct: 120 EIDLPQFEVQQKVESKVYLPRVETEQKAETHGDLPHVQAEERVEPETDIRPHEAVRDIEE 179

Query: 181 K-DAAENSNKSIESRE-PSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAAS 238
           K D   + + +++ ++    S    ++ S+ +E+SESK + E  E VQ   + +Q++  +
Sbjct: 180 KSDVVNDGSVAVQEKQRQEFSQSTKAKYSLGMENSESKITGETSEGVQVPEVTTQVTVVT 239

Query: 239 EKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLRDKIDE--GIDKATEDFINVM 296
           ++D  K  P Q +  ED S+  L N  E+ ASLL++YHL+D+ +E    +   E+ +  +
Sbjct: 240 DEDAIKVVPPQQLDTEDGSKAALGNITEA-ASLLESYHLKDRAEESTATEGPGEEALGPV 298

Query: 297 EELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRAREL 356
           EEL++G+++KDGK+V+ FLQAIHAAEQRQAELD  AFAEEKRALKEKYEKEL+D RAREL
Sbjct: 299 EELDDGFVTKDGKLVMSFLQAIHAAEQRQAELDAHAFAEEKRALKEKYEKELKDLRAREL 358

Query: 357 MRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAE 416
           M  EEAA+L+KE+KRERAKAAA I++LQEKMEEKLRMELEQKE+EAE+ +K   ELAKAE
Sbjct: 359 MHAEEAAMLDKEIKRERAKAAAAIRNLQEKMEEKLRMELEQKESEAEANMKRIQELAKAE 418

Query: 417 IAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG 476
           + ++IA EK  QIEKMAEANL+INALCMAFYARSEEAR+ +  HKLALGALALEDALS+G
Sbjct: 419 LTSAIASEKAVQIEKMAEANLNINALCMAFYARSEEARQIHSVHKLALGALALEDALSKG 478

Query: 477 LPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQK 524
           LPIQ+E+D L TY++G +KDS++ LVLS+LPEETRYHGT+TLLQLNQK
Sbjct: 479 LPIQQELDALNTYMEGTDKDSLIHLVLSTLPEETRYHGTDTLLQLNQK 526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224083763\|ref\|XP_002307114.1\| predicted protein [Populus trichocarpa] gi\|222856563\|gb\|EEE94110.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296082466\|emb\|CBI21471.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224096233\|ref\|XP_002310585.1\| predicted protein [Populus trichocarpa] gi\|222853488\|gb\|EEE91035.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356511121\|ref\|XP_003524278.1\| PREDICTED: uncharacterized protein LOC100807909, partial [Glycine max]	Back alignment and taxonomy information

>gi\|359480840\|ref\|XP_002276780.2\| PREDICTED: formation of crista junctions protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449451629\|ref\|XP_004143564.1\| PREDICTED: uncharacterized protein LOC101212567 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356528505\|ref\|XP_003532843.1\| PREDICTED: uncharacterized protein LOC100794530, partial [Glycine max]	Back alignment and taxonomy information

>gi\|18420505\|ref\|NP_568066.1\| uncharacterized protein [Arabidopsis thaliana] gi\|13605659\|gb\|AAK32823.1\|AF361810_1 AT4g39690/T19P19_80 [Arabidopsis thaliana] gi\|21700889\|gb\|AAM70568.1\| AT4g39690/T19P19_80 [Arabidopsis thaliana] gi\|23397147\|gb\|AAN31857.1\| unknown protein [Arabidopsis thaliana] gi\|332661705\|gb\|AEE87105.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297797988\|ref\|XP_002866878.1\| hypothetical protein ARALYDRAFT_490751 [Arabidopsis lyrata subsp. lyrata] gi\|297312714\|gb\|EFH43137.1\| hypothetical protein ARALYDRAFT_490751 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		539
TAIR\|locus:2135267		650	AT4G39690 "AT4G39690" [Arabido	0.910	0.755	0.363	8.2e-67

TAIR\|locus:2135267 AT4G39690 "AT4G39690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 196/539 (36%), Positives = 257/539 (47%)

Query:    16 PRQIIAQLPSIISARKEYSTASQKNVSPKPGPTGKP-------------PESGSNFSPII 62
             PR + AQ   + S+R   ++ S KN  P   P GKP             P +  N S ++
Sbjct:    19 PRNLGAQRFHLSSSRN--ASTSGKNGLPGAKPVGKPDASKVDPPKVTPPPPTKGNSSKVV 76

Query:    63 FGATVVVGVGLIAYQNGYLDQYIDIEKEK-----HSSLDSSKFRXXXXXXXXXXXXAEPV 117
              G   + G  L+AYQ GYLDQY+  E++K     HS   + K                  
Sbjct:    77 IGGVAIAGAFLVAYQTGYLDQYLGKEQQKLSERIHSDALTEKLEEAHHLNVPSGVEDSTE 136

Query:   118 VFSHSDEEPKTSISAVEQAMQSVEPHKDIR-QPEALSKTPVEDQPHLQDKVELTPQDQTV 176
                  + +P+ + S   + +QS     DI  QPE  S    +   ++    E TPQ+  +
Sbjct:   137 KDGKVETQPQVTHSEASEGVQS-----DIELQPE--SDLSSDRFTYISSNQEETPQETVI 189

Query:   177 AVKEKDAAENSNKSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQGTGIL--SQM 234
                E +   ++++                                  N Q + +   S+ 
Sbjct:   190 DRAEINLPISASEDSGAKPDMPSEIISEAESVKLEAVPKPGDSPIIVNAQSSSVHRESET 249

Query:   235 SAASEKDEQKAFPQQSIIIEDKSENELSNSAESPASLLDAYHLR---------DKIDEGI 285
              +AS KD     P      ED  E E+    + P SLL  Y+L            I E I
Sbjct:   250 ESASPKD-----PAALKTPEDGIEREV----QLPGSLLKEYNLEGSDTESTGSSSIGEQI 300

Query:   286 DKATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE 345
              K TE F N  E L + Y+++DGK+VLDFL AIHAAE++QA LD + FAEE RALKEKYE
Sbjct:   301 TKETEAFPNSTEGLKDSYMTEDGKLVLDFLAAIHAAEKQQAHLDAQVFAEELRALKEKYE 360

Query:   346 KELRDSRARELMRTEEAAIXXXXXXXXXXXXXXTIKSXXXXXXXXXXXXXXXXXNEAESK 405
              ELRD RARELMR EEAAI               IK+                  EA+  
Sbjct:   361 NELRDLRARELMRIEEAAILDKELKRERTKAAAAIKAIQERMEDKLKAELEQKETEAQLA 420

Query:   406 LKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKXXXX 465
             L  A ELAKAE+ ++IA+EK AQIEKMAEA+L+I AL MAFYARSEEAR+S+  HK    
Sbjct:   421 LSKAEELAKAEMISTIAKEKAAQIEKMAEADLNIKALSMAFYARSEEARQSHSVHKLALG 480

Query:   466 XXXXXXXXSRGLPIQKEIDTLYTYLDGIEKXXXXXXXXXXXPEETRYHGTETLLQLNQK 524
                     S+GLP+QKEIDTL TYL+G  K           PEE R +GT+T+LQLNQK
Sbjct:   481 ALALDDTLSKGLPVQKEIDTLQTYLEGTHKDSILGLVLSSLPEEARSNGTDTVLQLNQK 539


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.126   0.331    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      539       428   0.00085  118 3  11 23  0.37    35
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  206 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.37u 0.10s 38.47t   Elapsed:  00:00:02
  Total cpu time:  38.37u 0.10s 38.47t   Elapsed:  00:00:02
  Start:  Mon May 20 15:20:29 2013   End:  Mon May 20 15:20:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		539
pfam09731		493	pfam09731, Mitofilin, Mitochondrial inner membrane	2e-36
PLN02870		533	PLN02870, PLN02870, Probable galacturonosyltransfe	7e-05

>gnl\|CDD\|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein	Back alignment and domain information

 Score =  141 bits (357), Expect = 2e-36
 Identities = 84/347 (24%), Positives = 138/347 (39%), Gaps = 26/347 (7%)

Query: 192 ESREPSTSPPVSSEGSVEVESSESKSSKEKDENVQGTGILSQMSAASEKDEQKAFPQQSI 251
           E       P +S   SV   S   K   ++ +  + +G+  +++ A  K    A    + 
Sbjct: 52  EEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAEATTP 111

Query: 252 IIEDKSENELSNSAESPASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL-SKDGKV 310
               +    L    E               D  + +    F ++++ +    L      +
Sbjct: 112 KSIQELVEALEELLEELLKETA-------SDPVVQELVSIFNDLIDSIKEDNLKDDLESL 164

Query: 311 VLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELK 370
           +    + +    ++ AEL      E +RALKEK E+ L       L R E         K
Sbjct: 165 IASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESK--EAALEK 222

Query: 371 RERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAE--------IAASIA 422
           + R +     + L++K EEKLR ELE++    E KLKN L L   E        I   + 
Sbjct: 223 QLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVE 282

Query: 423 REKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----L 477
            E+  ++ K+AE N  +  L  A  +RSE   +++   +L L   AL+ AL  G      
Sbjct: 283 EERNGRLAKLAELNSRLKGLEKALDSRSEAEDENHKVQQLWLAVEALKSALKSGSAGSPR 342

Query: 478 PIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQK 524
           P+ KE+D L       + D ++D  L+SLP E    G  +  QL  +
Sbjct: 343 PLVKELDALKEL---AKDDELVDAALASLPPEASQRGILSEEQLRNR 386

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl\|CDD\|215468 PLN02870, PLN02870, Probable galacturonosyltransferase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		539
PF09731		582	Mitofilin: Mitochondrial inner membrane protein; I	100.0
KOG1854		657	consensus Mitochondrial inner membrane protein (mi	98.12
PRK06569		155	F0F1 ATP synthase subunit B'; Validated	95.55
PRK09174		204	F0F1 ATP synthase subunit B'; Validated	95.45
COG0711		161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	94.95
COG4223		422	Uncharacterized protein conserved in bacteria [Fun	94.74
CHL00118		156	atpG ATP synthase CF0 B' subunit; Validated	94.32
PTZ00121		2084	MAEBL; Provisional	93.28
PRK08476		141	F0F1 ATP synthase subunit B'; Validated	93.17
PRK06568		154	F0F1 ATP synthase subunit B; Validated	91.82
PRK14472		175	F0F1 ATP synthase subunit B; Provisional	91.54
PRK07353		140	F0F1 ATP synthase subunit B'; Validated	91.19
PTZ00121		2084	MAEBL; Provisional	90.82
PRK13454		181	F0F1 ATP synthase subunit B'; Provisional	90.58
PRK13453		173	F0F1 ATP synthase subunit B; Provisional	90.17
PRK14475		167	F0F1 ATP synthase subunit B; Provisional	89.75
CHL00019		184	atpF ATP synthase CF0 B subunit	88.92
PRK14471		164	F0F1 ATP synthase subunit B; Provisional	88.68
PRK00409		782	recombination and DNA strand exchange inhibitor pr	88.5
PRK06231		205	F0F1 ATP synthase subunit B; Validated	88.48
TIGR03321		246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	88.21
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.18
PRK13428		445	F0F1 ATP synthase subunit delta; Provisional	88.11
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	87.24
PRK14473		164	F0F1 ATP synthase subunit B; Provisional	86.73
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	85.98
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	85.73
PRK13455		184	F0F1 ATP synthase subunit B; Provisional	85.42
PRK09174		204	F0F1 ATP synthase subunit B'; Validated	85.17
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	85.01
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	84.86
PRK05759		156	F0F1 ATP synthase subunit B; Validated	84.85
PRK13460		173	F0F1 ATP synthase subunit B; Provisional	84.75
PF09731		582	Mitofilin: Mitochondrial inner membrane protein; I	83.96
TIGR01069		771	mutS2 MutS2 family protein. Function of MutS2 is u	83.66
PRK13461		159	F0F1 ATP synthase subunit B; Provisional	82.86
PRK13454		181	F0F1 ATP synthase subunit B'; Provisional	82.72
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	81.37
KOG0971		1243	consensus Microtubule-associated protein dynactin	80.76
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	80.55
PRK08475		167	F0F1 ATP synthase subunit B; Validated	80.27

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology	Back alignment and domain information

Probab=100.00  E-value=2.6e-32  Score=281.26  Aligned_cols=262  Identities=29%  Similarity=0.347  Sum_probs=232.7

Q ss_pred             cchhhhhhccccccccCCCcchhhhhhhHhhhhcccc--cCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 009260          268 PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL--SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE  345 (539)
Q Consensus       268 ~~SLle~Y~L~d~~d~~~~~~~E~~~~~~eel~~g~~--s~DGKlvld~~~AIhaAe~rQAe~DA~~f~Ee~r~lkekyE  345 (539)
                      -+.+++.|+..+..+.....+..-.-+.+..++++.+  .+++.++.++...|++..++.++++...+.+..++|+++|+
T Consensus       208 ~~~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~  287 (582)
T PF09731_consen  208 LPKIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE  287 (582)
T ss_pred             hhhhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788889988766555542222222255667788888  88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------
Q 009260          346 KELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEI--------  417 (539)
Q Consensus       346 kELkdararElm~aeeaa~LdkELk~erak~aaaiK~lqe~~EekL~~EL~~keeEa~~ql~~~eelakAEl--------  417 (539)
                      ..++..+.+..++.++...  ++.+..+......+..|++.++++|+.+|++..+..+++|++.......|+        
T Consensus       288 e~~~~~~~~~~~~le~~~~--~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i  365 (582)
T PF09731_consen  288 ELLSKLREELEQELEEKRA--ELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEI  365 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888877766543  455556666788899999999999999999999999999998877777766        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhhHhhHHHHHhcC-----CCcHHHHHHHHHhhcC
Q 009260          418 AASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----LPIQKEIDTLYTYLDG  492 (539)
Q Consensus       418 ~aaiA~EKA~qieki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALGalALedAls~G-----aPI~~Evd~Lr~~l~G  492 (539)
                      ..+|..||..++.+|++++.+|++||+++++|++..+.+|.+|+|.+++.+|.++|.+|     .||..||+.|+.+..+
T Consensus       366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~  445 (582)
T PF09731_consen  366 KEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKELAPD  445 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCC
Confidence            88899999999999999999999999999999999999999999999999999999999     9999999999999888


Q ss_pred             CCCchHHHHHHhcCchHHhhcCCcchHHhhhccccccchhhc
Q 009260          493 IEKDSVLDLVLSSLPEETRYHGTETLLQLNQKPTREREKKRI  534 (539)
Q Consensus       493 idKDsll~lalsSLPeea~~~Gt~T~lQL~qkF~~~K~~~r~  534 (539)
                         |+||++||++||+++..+|++|+.||.++|+.|...||-
T Consensus       446 ---d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~  484 (582)
T PF09731_consen  446 ---DELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRR  484 (582)
T ss_pred             ---ChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence               999999999999999999999999999999999999983

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PRK06569 F0F1 ATP synthase subunit B'; Validated	Back alignment and domain information

>PRK09174 F0F1 ATP synthase subunit B'; Validated	Back alignment and domain information

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]	Back alignment and domain information

>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>PRK08476 F0F1 ATP synthase subunit B'; Validated	Back alignment and domain information

>PRK06568 F0F1 ATP synthase subunit B; Validated	Back alignment and domain information

>PRK14472 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>PRK07353 F0F1 ATP synthase subunit B'; Validated	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>PRK13454 F0F1 ATP synthase subunit B'; Provisional	Back alignment and domain information

>PRK13453 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>PRK14475 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>CHL00019 atpF ATP synthase CF0 B subunit	Back alignment and domain information

>PRK14471 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>PRK06231 F0F1 ATP synthase subunit B; Validated	Back alignment and domain information

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PRK13428 F0F1 ATP synthase subunit delta; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK14473 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PRK13455 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>PRK09174 F0F1 ATP synthase subunit B'; Validated	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PRK05759 F0F1 ATP synthase subunit B; Validated	Back alignment and domain information

>PRK13460 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology	Back alignment and domain information

>TIGR01069 mutS2 MutS2 family protein	Back alignment and domain information

>PRK13461 F0F1 ATP synthase subunit B; Provisional	Back alignment and domain information

>PRK13454 F0F1 ATP synthase subunit B'; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PRK08475 F0F1 ATP synthase subunit B; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		539
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	5e-05
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 316  QAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAK 375
            +     E+ QAE +  A AEE R      ++EL +       R EE     ++L+ E+ K
Sbjct: 893  EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952

Query: 376  AAATIKSLQEKME--EKLRMELEQKENEAESKLKNALE--LAKAEIAASIAREKVAQIEK 431
                +  L+E++E  E  R +L+ ++  A+ K+K   +  L   +    + +E+    E+
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 432  MAEANLHINA 441
            +++   ++  
Sbjct: 1013 VSDLTTNLAE 1022

PyMOL of 1i84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		539
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.73
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.31
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	82.06

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

Probab=91.73  E-value=3.5  Score=51.86  Aligned_cols=110  Identities=17%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             HHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHhhhh
Q 009260          394 ELEQKENEAESKLKNAL-------ELAKAEIAASIAREKVAQI-EKMAEANLHINALCMAFYARSEEARKSYFAHKLALG  465 (539)
Q Consensus       394 EL~~keeEa~~ql~~~e-------elakAEl~aaiA~EKA~qi-eki~ea~l~i~AL~mAfyarSeeaRqSH~vHKLALG  465 (539)
                      +++....+++..|.+|+       ++++||-..+.|.++...+ +++++++.+|..|-.-|...-.|...--.==..+-.
T Consensus      1991 ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A         1991 EIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp             HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555443       6666666666666666655 458888899999988876654444332222222233


Q ss_pred             HhhHHHHHhcCCCcHH-----HHHHHHHhhcCCCCchHHHHHH
Q 009260          466 ALALEDALSRGLPIQK-----EIDTLYTYLDGIEKDSVLDLVL  503 (539)
Q Consensus       466 alALedAls~GaPI~~-----Evd~Lr~~l~GidKDsll~lal  503 (539)
                      .|.....|-.|+-=++     .+..|......+-.|.||.+|.
T Consensus      2071 kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaaf 2113 (3245)
T 3vkg_A         2071 KVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAF 2113 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3444445555544333     2555554333333399998874

PyMOL of 3vkg

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00