Citrus Sinensis ID: 009261

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MEALLLSSVSPFYNTPLKLKYNRTHFTAKPKLLSFHFSPLSTLSSFSSKPSKLFTTLSPSSQVSTEATDPPETEPETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHALR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccEEccccEEEcccccEEEcccccEEEcccccccccccccccccccEEEEEEEEccEEEEEccccccccccccccccccccccccccccEEEEEEEEEccccHHHHccccccccccccccccccccccEEEEccccEEEEEEEEEEccccccccccccccEEEccEEEEEEEcccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccc
cHHHHHHHccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccEccccHHHcccccccccEEccccEEEEEccccccEEEEccccccccccccccEEccccEEEEccccEEEcccccEEEcccccccccccccccccEEEEccEEEEccEEEEEccccccHHHHcccccccccccccccccEEEccEEcccccHHHHHHHccccccccEEEccccccccccEEEcccccccccccccccccccccccccccccEEccccEEccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEccccccHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccc
MEALLLSsvspfyntplklkynrthftakpkllsfhfsplstlssfsskpsklfttlspssqvsteatdppetepetnsqeekfdwfsqwyplmpvcdldkrvphakkvLGLDVVVWWDRNENEWRVFADacphrlaplsegridqwgrlqcpyhgwcfsgsgdckfipqappdgppvhtskkacaAVYPSAVQngilwfwpdiapqckdiiktkkpphipelddpsftkmfgsrdvpyGYEVLMENlmdpahltyahygmmrtrkpkvmldreggrpikisfekidingfiakqdsesakflaPCVFVVYFDLlenqengsassggaeEKLKQRRVAMIFIcapvspgnsrviwafprnfQIWIDKVVPRWIFHIgqnlildsdlcllhVEERkimavgpanwqkacfvptksdnlvVGFRMWLKKysggqfnwggkfdatlpptlpreqlmDRYWSHvvnckscnaahKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTfhyhdynhalr
mealllssvspfyntplklkYNRTHFTAKPKLLSFHFSPLSTLSSFSSKPSKLFttlspssqvsteatdppetepetnsqeeKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKpphipelddpsftkmfgsRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQengsassggaeEKLKQRRVAMIFICapvspgnsRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSggqfnwggkFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHALR
MEALLLSSVSPFYNTPLKLKYNRTHFTAKPKllsfhfsplstlssfsskpsklftTLSPSSQVSteatdppetepetNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEvilqvvsvvsvgivAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHALR
*******SVSPFYNTPLKLKYNRTHFTAKPKLLSFHFS*********************************************FDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIP************KKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTK***********SFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLE******************RRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYN****
************************************************************************************DWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAP***********ACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSG**********************MDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHA**
MEALLLSSVSPFYNTPLKLKYNRTHFTAKPKLLSFHFSPLS****************************************EKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQE***********KLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHALR
*EALLLSSVSPFYNTPLKLKYNRTHFTAKPKLLSFHFSP*******************************************KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHA**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MEALLLSSVSPFYNTPLKLKYNRTHFTAKPKLLSFHFSPLSTLSSFSSKPSKLFTTLSPSSQVSTEATDPPETEPETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHALR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query539 2.2.26 [Sep-21-2011]
Q8W496559 Protochlorophyllide-depen yes no 0.927 0.894 0.595 0.0
Q9FYC2537 Pheophorbide a oxygenase, no no 0.864 0.867 0.339 4e-73
O49931553 Protein TIC 55, chloropla N/A no 0.740 0.721 0.263 2e-41
Q9SK50539 Protein TIC 55, chloropla no no 0.775 0.775 0.262 1e-37
Q9XJ38463 Chlorophyllide a oxygenas N/A no 0.664 0.773 0.245 5e-17
Q9ZWM5645 Chlorophyllide a oxygenas N/A no 0.484 0.404 0.258 3e-15
P12609329 Vanillate O-demethylase o N/A no 0.469 0.768 0.256 2e-11
Q8S7E1541 Chlorophyllide a oxygenas no no 0.621 0.619 0.224 1e-10
Q9AHG3346 Putative toluene-4-sulfon no no 0.541 0.843 0.231 5e-10
Q9MBA1536 Chlorophyllide a oxygenas no no 0.534 0.537 0.237 6e-10
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1 Back     alignment and function desciption
 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/527 (59%), Positives = 388/527 (73%), Gaps = 27/527 (5%)

Query: 39  PLSTLSSFSSKPSKLFTTLSPSSQVSTEATD--PPETEPETNSQEEKFDWFSQWYPLMPV 96
           P+S  S  + K S+  T +S     S   +   PPE E       +KFDW++ WYP+MP+
Sbjct: 32  PISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYANWYPVMPI 91

Query: 97  CDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHG 156
           CDLDK+VPH KKV+G+D+VVWWDRNE +W+V  D CPHRLAPLS+GRIDQWGRLQC YHG
Sbjct: 92  CDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCVYHG 151

Query: 157 WCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKK 216
           WCF+GSGDCK IPQAPPDGPPVHT K+AC AVYPS VQ+ I+WFWP+  P+ K+II+T K
Sbjct: 152 WCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNK 211

Query: 217 PPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPK-------- 268
           PP+IPEL+DPSFTK+ G+RD+PYGY+VL+ENLMDPAH+ YAHYG+MR  KPK        
Sbjct: 212 PPYIPELEDPSFTKLMGNRDIPYGYDVLVENLMDPAHVPYAHYGLMRFPKPKGKYIICIS 271

Query: 269 -----------VML----DREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFD 313
                      ++L    DREGG+P++I+ +K+D  GF +KQ+   + F+APCV+    D
Sbjct: 272 NSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTD 331

Query: 314 LLENQENGSASSGGAEE-KLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRW 372
            L  QE+   +   +++  L +RR+++IFIC PVSPG SR+IW FPRNF ++IDK+VPRW
Sbjct: 332 PLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRW 391

Query: 373 IFHIGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQ 432
           +FHIGQN ILDSDL LLHVEERKI+  GP NWQKACF+PTKSD  VV FR W  KYS  +
Sbjct: 392 VFHIGQNTILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEAR 451

Query: 433 FNWGGKFDA-TLPPTLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIV 491
            +W GKFD   LPPT PREQL DRYWSHV NC SC  AHK LNALEVILQ+ SV  +G++
Sbjct: 452 VDWRGKFDPFLLPPTPPREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVM 511

Query: 492 AATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYHDYNHAL 538
           A  KQ  MS   R  ++  AV+ FAASKWLSHF+YKTFHYHDYNHA+
Sbjct: 512 AVLKQTTMSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAV 558
Part of a translocon most abundantly expressed in etiolated plants and involved in the protochlorophyllide-dependent import of the precursor NADPH:protochlorophyllide oxidoreductase A (pPORA).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1 Back     alignment and function description
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1 Back     alignment and function description
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1 Back     alignment and function description
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2 Back     alignment and function description
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1 Back     alignment and function description
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1 Back     alignment and function description
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5 SV=1 Back     alignment and function description
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
359478456532 PREDICTED: protochlorophyllide-dependent 0.946 0.958 0.680 0.0
255585393552 pheophorbide A oxygenase, putative [Rici 0.990 0.967 0.657 0.0
356525253531 PREDICTED: pheophorbide a oxygenase, chl 0.920 0.934 0.663 0.0
356512495529 PREDICTED: pheophorbide a oxygenase, chl 0.916 0.933 0.653 0.0
357518875529 Pheophorbide a oxygenase [Medicago trunc 0.896 0.913 0.666 0.0
357518871546 Pheophorbide a oxygenase [Medicago trunc 0.892 0.880 0.634 0.0
357518865532 Pheophorbide a oxygenase [Medicago trunc 0.888 0.900 0.651 0.0
449452680544 PREDICTED: protochlorophyllide-dependent 0.988 0.979 0.592 0.0
224073160475 predicted protein [Populus trichocarpa] 0.849 0.964 0.663 0.0
18416592536 ACD1-like protein [Arabidopsis thaliana] 0.927 0.932 0.621 0.0
>gi|359478456|ref|XP_002283592.2| PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/514 (68%), Positives = 417/514 (81%), Gaps = 4/514 (0%)

Query: 29  KPKL-LSFHFSPLSTLSSFSSKPSKLFTTLSPSSQVSTEATDPPETEPETNSQEEKFDWF 87
           KP L L F   P S         ++     + SS VSTE  +P E E +++SQEEKF+W 
Sbjct: 20  KPMLHLPFRSVPTSIFPPIRQCTARSRVVTAVSSTVSTEPVNPVEPEVQSHSQEEKFNWL 79

Query: 88  SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQW 147
            QWYP+MPVCDLDKR+PHAKKV+GLDVVVWWDRNEN W+VF D CPHRLAPLSEGRIDQW
Sbjct: 80  LQWYPVMPVCDLDKRIPHAKKVIGLDVVVWWDRNENAWKVFDDMCPHRLAPLSEGRIDQW 139

Query: 148 GRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQ 207
           GRLQC YHGWCF+GSGDCKFIPQAPPDGPPVHT KKAC +VYPS VQN I+WFWP+  PQ
Sbjct: 140 GRLQCVYHGWCFNGSGDCKFIPQAPPDGPPVHTFKKACVSVYPSTVQNDIVWFWPNTDPQ 199

Query: 208 CKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMR--TR 265
            KDI+   KPP+IPELDDPS+T++ G+R++PYGYEVL+ENLMDPAH+ YAHYG+M   ++
Sbjct: 200 YKDILMKNKPPYIPELDDPSYTRLMGNREIPYGYEVLIENLMDPAHVPYAHYGIMTVPSQ 259

Query: 266 KPKVMLDREGGRPIKISFEKIDINGFIAKQDSESAKFLAPCVFVVYFDLLENQENGSASS 325
           K +V  DREGGRP+++  +K+D +GFI KQ+  ++KF+ PCVF V  DL  ++ NGSASS
Sbjct: 260 KKRVKADREGGRPLEMKIQKLDRSGFIGKQEGGTSKFIPPCVFYVSSDLFIDKTNGSASS 319

Query: 326 GGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLILDSD 385
              ++++ QRR+ +IFIC PVSPGNSR+IW FPRNF +W+D+VVPRW+FH+GQNLILDSD
Sbjct: 320 VETKKEV-QRRMLLIFICIPVSPGNSRLIWTFPRNFGVWVDRVVPRWMFHVGQNLILDSD 378

Query: 386 LCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPP 445
           L LLHVEERKIM +GP+NWQKACFVPTKSD  VVGFR WL KY+GGQ +WG KF   LPP
Sbjct: 379 LYLLHVEERKIMDIGPSNWQKACFVPTKSDACVVGFRKWLNKYAGGQVDWGTKFSGALPP 438

Query: 446 TLPREQLMDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRA 505
           T PREQLMDRYWSHVVNC SC  A K LNALEV+LQV+SV S+GIVAATKQ+ MS+A R 
Sbjct: 439 TPPREQLMDRYWSHVVNCSSCRVAIKGLNALEVVLQVISVASIGIVAATKQSLMSVAART 498

Query: 506 TIVSFAVICFAASKWLSHFVYKTFHYHDYNHALR 539
            +VS AVICFAAS+WLSHF+YK FH+HDYNHALR
Sbjct: 499 ALVSMAVICFAASRWLSHFIYKIFHFHDYNHALR 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585393|ref|XP_002533392.1| pheophorbide A oxygenase, putative [Ricinus communis] gi|223526766|gb|EEF28992.1| pheophorbide A oxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356525253|ref|XP_003531241.1| PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356512495|ref|XP_003524954.1| PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357518875|ref|XP_003629726.1| Pheophorbide a oxygenase [Medicago truncatula] gi|355523748|gb|AET04202.1| Pheophorbide a oxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357518871|ref|XP_003629724.1| Pheophorbide a oxygenase [Medicago truncatula] gi|355523746|gb|AET04200.1| Pheophorbide a oxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357518865|ref|XP_003629721.1| Pheophorbide a oxygenase [Medicago truncatula] gi|355523743|gb|AET04197.1| Pheophorbide a oxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449452680|ref|XP_004144087.1| PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224073160|ref|XP_002304001.1| predicted protein [Populus trichocarpa] gi|222841433|gb|EEE78980.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18416592|ref|NP_567725.1| ACD1-like protein [Arabidopsis thaliana] gi|15983402|gb|AAL11569.1|AF424575_1 AT4g25650/L73G19_30 [Arabidopsis thaliana] gi|15810259|gb|AAL07017.1| unknown protein [Arabidopsis thaliana] gi|37962888|gb|AAR05798.1| LLS1-like protein [Arabidopsis thaliana] gi|332659688|gb|AEE85088.1| ACD1-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
TAIR|locus:2131406559 ACD1-LIKE "AT4G25650" [Arabido 0.389 0.375 0.671 1.2e-173
TAIR|locus:2082122537 ACD1 "ACCELERATED CELL DEATH 1 0.803 0.806 0.356 7.2e-68
TAIR|locus:2047329539 TIC55-II "translocon at the in 0.398 0.398 0.331 1.1e-28
TAIR|locus:2823671536 CH1 "CHLORINA 1" [Arabidopsis 0.278 0.279 0.298 2.3e-12
UNIPROTKB|P71875386 kshA "3-ketosteroid-9-alpha-mo 0.300 0.419 0.275 3e-10
UNIPROTKB|Q4KB09352 vanA "Vanillate O-demethylase, 0.552 0.846 0.240 2.4e-09
UNIPROTKB|Q48IV9354 vanA "Vanillate monooxygenase, 0.285 0.435 0.264 1.2e-07
ZFIN|ZDB-GENE-040718-356460 zgc:92275 "zgc:92275" [Danio r 0.291 0.341 0.284 2.5e-05
UNIPROTKB|F1NKZ9409 LOC427775 "Uncharacterized pro 0.285 0.376 0.268 0.00034
WB|WBGene00007536428 daf-36 [Caenorhabditis elegans 0.289 0.364 0.268 0.00037
TAIR|locus:2131406 ACD1-LIKE "AT4G25650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 867 (310.3 bits), Expect = 1.2e-173, Sum P(2) = 1.2e-173
 Identities = 141/210 (67%), Positives = 171/210 (81%)

Query:    59 PSSQVSXXXXXXXXXXXXXNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWW 118
             PSS  +                 +KFDW++ WYP+MP+CDLDK+VPH KKV+G+D+VVWW
Sbjct:    54 PSSSAATSTNSPPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWW 113

Query:   119 DRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPV 178
             DRNE +W+V  D CPHRLAPLS+GRIDQWGRLQC YHGWCF+GSGDCK IPQAPPDGPPV
Sbjct:   114 DRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPV 173

Query:   179 HTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVP 238
             HT K+AC AVYPS VQ+ I+WFWP+  P+ K+II+T KPP+IPEL+DPSFTK+ G+RD+P
Sbjct:   174 HTFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIP 233

Query:   239 YGYEVLMENLMDPAHLTYAHYGMMRTRKPK 268
             YGY+VL+ENLMDPAH+ YAHYG+MR  KPK
Sbjct:   234 YGYDVLVENLMDPAHVPYAHYGLMRFPKPK 263
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0010277 "chlorophyllide a oxygenase [overall
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P71875 kshA "3-ketosteroid-9-alpha-monooxygenase oxygenase subunit" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-356 zgc:92275 "zgc:92275" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKZ9 LOC427775 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00007536 daf-36 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W496PTC52_ARATHNo assigned EC number0.59580.92760.8944yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.120.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
PLN02518539 PLN02518, PLN02518, pheophorbide a oxygenase 1e-101
cd03480138 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron 9e-78
COG4638367 COG4638, HcaE, Phenylpropionate dioxygenase and re 2e-39
cd03469118 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o 1e-26
pfam0841791 pfam08417, PaO, Pheophorbide a oxygenase 1e-25
cd04338134 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L 2e-23
pfam0035599 pfam00355, Rieske, Rieske [2Fe-2S] domain 2e-19
cd03532116 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem 8e-17
cd04337129 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o 3e-14
cd0346798 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster 5e-14
PLN02281536 PLN02281, PLN02281, chlorophyllide a oxygenase 6e-14
cd03479144 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem 1e-12
PLN00095394 PLN00095, PLN00095, chlorophyllide a oxygenase; Pr 1e-11
cd03531115 cd03531, Rieske_RO_Alpha_KSH, The alignment model 4e-11
COG2146106 COG2146, {NirD}, Ferredoxin subunits of nitrite re 5e-10
cd03537123 cd03537, Rieske_RO_Alpha_PrnD, This alignment mode 6e-07
cd0353098 cd03530, Rieske_NirD_small_Bacillus, Small subunit 6e-06
cd0347895 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f 1e-05
TIGR03229433 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenas 2e-04
cd03535123 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron 2e-04
cd03542123 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iro 3e-04
cd08878196 cd08878, RHO_alpha_C_DMO-like, C-terminal catalyti 5e-04
cd0352898 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro 0.002
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase Back     alignment and domain information 
 Score =  314 bits (806), Expect = e-101
 Identities = 185/551 (33%), Positives = 270/551 (49%), Gaps = 68/551 (12%)

Query: 24  THFTAKPKLLSFHFSPLSTLSSFSSKPSKLFTTL---SPSSQVSTEATDPPETEPE---- 76
           +   + P  +     P    SS   +  K+FT L   +P S  S  A    E E +    
Sbjct: 17  STPKSTPFFIPARTIPFV--SSSRPRRGKIFTPLRVAAPPSVPSEAALQQDEGEEQRVEQ 74

Query: 77  ---TNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACP 133
                S + KF W   WYP+  V DLD  VP   ++LG D+V+W D N+ EW  F D CP
Sbjct: 75  ELGQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCP 134

Query: 134 HRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHT--SKKACAAVYPS 191
           HRLAPLSEGRID+ G LQC YHGW F G G C  IPQA P+GP      S +ACA  +P+
Sbjct: 135 HRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPT 194

Query: 192 AVQNGILWFWPDIAPQCKDIIKTKKPPHIP-ELDDPSFTKMFGSRDVPYGYEVLMENLMD 250
            V  G+L+ WPD      +  +  KPP +P E DDP F+ +   RD+ YGY+ LMEN+ D
Sbjct: 195 MVSQGLLFVWPD--ENGWERAQATKPPMLPDEFDDPEFSTVTIQRDLFYGYDTLMENVSD 252

Query: 251 PAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAKQDSE---SAKFLAPCV 307
           P+H+ +AH+        KV   R+  +P+    E     GF          +AKF+APC 
Sbjct: 253 PSHIDFAHH--------KVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCY 304

Query: 308 FVVYFDLLENQENGSASSGGAEEKLKQRRVAMIFICA---PVSPGNSRVIWAFPRNF--- 361
           ++   ++              +  +   +  +I+IC+   P++PG +R I    RNF   
Sbjct: 305 YINKIEID------------TKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQF 352

Query: 362 -----QIWIDKVVPRWIFHIGQNLILDSDLCLLHVEERKIMAVGP-------ANWQKACF 409
                  W  ++VPRW  H   N + D D+ +L  +E+  ++          A + K  F
Sbjct: 353 SMPGPAWW--QLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSKSGEGSADVNAQYTKLTF 410

Query: 410 VPTKSDNLVVGFRMWLKKYSGGQFNWGGKFDATLPP---TLPREQLMDRYWSHVVNCKSC 466
            PT++D  V+ FR WL+++   Q  W G+  +  P     L + Q++DR+  H +NC SC
Sbjct: 411 TPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQMLDRFEQHTLNCSSC 470

Query: 467 NAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVY 526
             A+K+   L+ +L   +VV     AAT      +  R  +   A+I  AAS +    + 
Sbjct: 471 KGAYKAFQTLQKVLIGATVV----FAATAGIPSDVQLRLILAGLALIS-AASAYALKELE 525

Query: 527 KTFHYHDYNHA 537
           K F + DY HA
Sbjct: 526 KNFVFVDYVHA 536

Length = 539
>gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) Back     alignment and domain information
>gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms Back     alignment and domain information
>gnl|CDD|219832 pfam08417, PaO, Pheophorbide a oxygenase Back     alignment and domain information
>gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane Back     alignment and domain information
>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain Back     alignment and domain information
>gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b Back     alignment and domain information
>gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes Back     alignment and domain information
>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase Back     alignment and domain information
>gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) Back     alignment and domain information
>gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional Back     alignment and domain information
>gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) Back     alignment and domain information
>gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) Back     alignment and domain information
>gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain Back     alignment and domain information
>gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) Back     alignment and domain information
>gnl|CDD|132273 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit Back     alignment and domain information
>gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|176887 cd08878, RHO_alpha_C_DMO-like, C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 539
PLN02518539 pheophorbide a oxygenase 100.0
PLN02281536 chlorophyllide a oxygenase 100.0
PLN00095394 chlorophyllide a oxygenase; Provisional 100.0
COG4638367 HcaE Phenylpropionate dioxygenase and related ring 100.0
TIGR03229433 benzo_1_2_benA benzoate 1,2-dioxygenase, large sub 100.0
TIGR03228438 anthran_1_2_A anthranilate 1,2-dioxygenase, large 99.97
cd03480138 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase 99.97
cd04338134 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate 99.97
cd03537123 Rieske_RO_Alpha_PrnD This alignment model represen 99.97
cd04337129 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) 99.96
cd03531115 Rieske_RO_Alpha_KSH The alignment model represents 99.95
cd03479144 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy 99.95
cd03532116 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy 99.95
cd03548136 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy 99.95
cd03545150 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox 99.95
cd03472128 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy 99.94
cd03539129 Rieske_RO_Alpha_S5H This alignment model represent 99.94
cd03541118 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase 99.93
cd03535123 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase 99.93
cd03469118 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( 99.93
cd03538146 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena 99.93
cd03536123 Rieske_RO_Alpha_DTDO This alignment model represen 99.92
cd0352898 Rieske_RO_ferredoxin Rieske non-heme iron oxygenas 99.91
cd0353098 Rieske_NirD_small_Bacillus Small subunit of nitrit 99.91
cd03529103 Rieske_NirD Assimilatory nitrite reductase (NirD) 99.9
cd03474108 Rieske_T4moC Toluene-4-monooxygenase effector prot 99.9
TIGR02377101 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE 99.9
cd03542123 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas 99.9
TIGR02378105 nirD_assim_sml nitrite reductase [NAD(P)H], small 99.89
PRK09965106 3-phenylpropionate dioxygenase ferredoxin subunit; 99.88
cd0347895 Rieske_AIFL_N AIFL (apoptosis-inducing factor like 99.88
PRK09511108 nirD nitrite reductase small subunit; Provisional 99.86
PF13806104 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 99.85
PF0035597 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 99.83
COG2146106 {NirD} Ferredoxin subunits of nitrite reductase an 99.82
cd0346798 Rieske Rieske domain; a [2Fe-2S] cluster binding d 99.81
cd0347791 Rieske_YhfW_C YhfW family, C-terminal Rieske domai 99.79
cd08878196 RHO_alpha_C_DMO-like C-terminal catalytic domain o 99.78
PF0841792 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 99.75
cd03476126 Rieske_ArOX_small Small subunit of Arsenite oxidas 99.72
cd03471126 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co 99.64
cd03473107 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha 99.64
TIGR02694129 arsenite_ox_S arsenite oxidase, small subunit. Thi 99.63
cd00680188 RHO_alpha_C C-terminal catalytic domain of the oxy 99.56
cd03470126 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co 99.55
cd08885190 RHO_alpha_C_1 C-terminal catalytic domain of the o 99.44
PRK13474178 cytochrome b6-f complex iron-sulfur subunit; Provi 99.43
cd08883175 RHO_alpha_C_CMO-like C-terminal catalytic domain o 99.42
cd08887185 RHO_alpha_C_3 C-terminal catalytic domain of the o 99.36
cd08886182 RHO_alpha_C_2 C-terminal catalytic domain of the o 99.32
TIGR01416174 Rieske_proteo ubiquinol-cytochrome c reductase, ir 99.3
cd08884205 RHO_alpha_C_GbcA-like C-terminal catalytic domain 99.25
PF00848209 Ring_hydroxyl_A: Ring hydroxylating alpha subunit 99.17
cd03475171 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma 98.83
cd08880222 RHO_alpha_C_ahdA1c-like C-terminal catalytic domai 98.72
cd08882243 RHO_alpha_C_MupW-like C-terminal catalytic domain 98.66
PF11723240 Aromatic_hydrox: Homotrimeric ring hydroxylase; In 98.32
COG0723177 QcrA Rieske Fe-S protein [Energy production and co 98.11
cd08879237 RHO_alpha_C_AntDO-like C-terminal catalytic domain 98.08
cd08881206 RHO_alpha_C_NDO-like C-terminal catalytic domain o 98.01
KOG1671210 consensus Ubiquinol cytochrome c reductase, subuni 97.68
TIGR03171321 soxL2 Rieske iron-sulfur protein SoxL2. This iron- 97.63
KOG1336478 consensus Monodehydroascorbate/ferredoxin reductas 96.25
>PLN02518 pheophorbide a oxygenase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-96  Score=798.43  Aligned_cols=439  Identities=37%  Similarity=0.711  Sum_probs=360.2

Q ss_pred             CcccccccccccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccC
Q 009261           76 ETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYH  155 (539)
Q Consensus        76 ~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyH  155 (539)
                      +....+.+|+|+++||+||.++||++|+++.++++|++|||||++.+|+++||+|+||||+++||+|++++++.|+||||
T Consensus        77 ~~~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYH  156 (539)
T PLN02518         77 GQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYH  156 (539)
T ss_pred             cccccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCC
Confidence            34566778999999999999999988999999999999999998335999999999999999999999965579999999


Q ss_pred             CeEEcCCCccccCCCCCCCCCC--CCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCC-CCCCCCCceEe
Q 009261          156 GWCFSGSGDCKFIPQAPPDGPP--VHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIP-ELDDPSFTKMF  232 (539)
Q Consensus       156 GW~F~~~G~c~~iP~~~~~~~~--~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p-~l~~~~~~~~~  232 (539)
                      ||+||.+|+|+.||+.+..++.  ...++++|+++|||+|++|+||||+++++.  +.+....+|.+| ++++++|....
T Consensus       157 GW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~--~~a~~~~~P~~~~~~~~~~~~~~~  234 (539)
T PLN02518        157 GWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGW--ERAQATKPPMLPDEFDDPEFSTVT  234 (539)
T ss_pred             CCEEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccc--cccccccCCCCcccccCCCceeEE
Confidence            9999999999999986543221  134567899999999999999999985421  112234567764 78888888777


Q ss_pred             eEEEEecChhhHhhhCCCCCCcccccccccccCCCceEEeccCCeeEEEEEeecCCCccccc---CCcceeEEeccEEEE
Q 009261          233 GSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRKPKVMLDREGGRPIKISFEKIDINGFIAK---QDSESAKFLAPCVFV  309 (539)
Q Consensus       233 ~~~~~~~~~~~~vEN~lD~~H~~~~H~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~~gf~~~---~~~~~~~F~~P~~~~  309 (539)
                      ..++++|+|++++||++|++|++|+|++++|        +++.+.+..++++..+..||.+.   ..+...+|.+||+++
T Consensus       235 ~~~~~~~~~~~l~EN~lD~sH~pfvH~~~~G--------~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~  306 (539)
T PLN02518        235 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTG--------RRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYI  306 (539)
T ss_pred             EEEEEecCchhHHHhCCccchhceecccccc--------CccccccccceEEEcCCCcccccccCCCceEEEEECCeEEE
Confidence            7889999999999999999999999999995        34444555566666666677652   234568899999877


Q ss_pred             EeeeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcc-------cchhccchhHHHHHhhhhhh
Q 009261          310 VYFDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQ-------IWIDKVVPRWIFHIGQNLIL  382 (539)
Q Consensus       310 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~-------~~~~~~~prw~~h~~~~~Vl  382 (539)
                      .........   +      ........+.+++++||+++|+||+||++.|||.       .|+ +++|||+.|+.+|+|+
T Consensus       307 ~~~~~~~~~---~------~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~-k~~PrW~~h~~~n~Vl  376 (539)
T PLN02518        307 NKIEIDTKL---P------IVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWW-QLVPRWYEHWTSNKVY  376 (539)
T ss_pred             Eeeeeeccc---c------CCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhh-hcCchHHHHhhhccch
Confidence            654321100   0      0011234566789999999999999999999983       344 7899999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcCC-------ccccccccccCCCchHHHHHHHHHHHHhCCCCCCCCCC--CCCCCCC-CChhhh
Q 009261          383 DSDLCLLHVEERKIMAVGP-------ANWQKACFVPTKSDNLVVGFRMWLKKYSGGQFNWGGKF--DATLPPT-LPREQL  452 (539)
Q Consensus       383 dqD~~iL~~qe~~l~~~g~-------~~w~~~~~vpt~aD~~VvafRrWl~k~~~g~p~w~~~~--~~~lp~~-~~~~~l  452 (539)
                      |||+.+||.||+.++..+.       ++|+++||+|+++|++|++||||+++|++|+++|++++  ..+||++ ++||||
T Consensus       377 ~~D~~~lh~Qe~~~~~~~~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~~~~~~~l  456 (539)
T PLN02518        377 DGDMIVLQGQEKIFLSKSGEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQM  456 (539)
T ss_pred             HhHHHHHHHHHHHHhhccccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCCCCCHHHH
Confidence            9999999999999987765       58999999999999999999999999999999999875  3568888 599999


Q ss_pred             hHhHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhhcceEEe
Q 009261          453 MDRYWSHVVNCKSCNAAHKSLNALEVILQVVSVVSVGIVAATKQNAMSMATRATIVSFAVICFAASKWLSHFVYKTFHYH  532 (539)
Q Consensus       453 ldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~l~~~~~~~f~f~  532 (539)
                      ||||||||+||+||++|||+|+++|+++++++++++|+++++...     ...+++++++++++++.|+.++++|+|||+
T Consensus       457 ldRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~  531 (539)
T PLN02518        457 LDRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDV-----QLRLILAGLALISAASAYALKELEKNFVFV  531 (539)
T ss_pred             hHHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHhhceec
Confidence            999999999999999999999999999999888877776555421     223455555677788899999999999999


Q ss_pred             ccCCCCC
Q 009261          533 DYNHALR  539 (539)
Q Consensus       533 dy~ha~~  539 (539)
                      ||+||++
T Consensus       532 ~~~~~~~  538 (539)
T PLN02518        532 DYVHAEI  538 (539)
T ss_pred             CccCccC
Confidence            9999985

>PLN02281 chlorophyllide a oxygenase Back     alignment and domain information
>PLN00095 chlorophyllide a oxygenase; Provisional Back     alignment and domain information
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit Back     alignment and domain information
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit Back     alignment and domain information
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) Back     alignment and domain information
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane Back     alignment and domain information
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) Back     alignment and domain information
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b Back     alignment and domain information
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) Back     alignment and domain information
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) Back     alignment and domain information
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins Back     alignment and domain information
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) Back     alignment and domain information
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) Back     alignment and domain information
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms Back     alignment and domain information
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) Back     alignment and domain information
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) Back     alignment and domain information
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain Back     alignment and domain information
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium Back     alignment and domain information
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily Back     alignment and domain information
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit Back     alignment and domain information
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional Back     alignment and domain information
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) Back     alignment and domain information
>PRK09511 nirD nitrite reductase small subunit; Provisional Back     alignment and domain information
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A Back     alignment and domain information
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types Back     alignment and domain information
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes Back     alignment and domain information
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain Back     alignment and domain information
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO) Back     alignment and domain information
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate Back     alignment and domain information
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit Back     alignment and domain information
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional Back     alignment and domain information
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit Back     alignment and domain information
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols [] Back     alignment and domain information
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp Back     alignment and domain information
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium Back     alignment and domain information
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] Back     alignment and domain information
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion] Back     alignment and domain information
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 Back     alignment and domain information
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
3gke_A349 Crystal Structure Of Dicamba Monooxygenase Length = 3e-14
2zyl_A386 Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl 5e-11
3vca_A412 Quaternary Ammonium Oxidative Demethylation: X-Ray 1e-06
3n0q_A409 Crystal Structure Of A Putative Aromatic-Ring Hydro 6e-06
3gcf_A394 Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr 2e-04
2bmo_A447 The Crystal Structure Of Nitrobenzene Dioxygenase L 6e-04
2hmj_A449 Crystal Structure Of The Naphthalene 1,2-Dioxygenas 8e-04
1ndo_A449 Napthalene 1,2-Dioxygenase Length = 449 9e-04
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 130 DACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVY 189
           D CPHR APLS+G I   G LQCPYHG  F G G C   P      P     +      +
Sbjct: 47  DICPHRFAPLSDG-ILVNGHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRS-----F 100
Query: 190 PSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELD---DPSFTKMFGSRDVPYGYEVLME 246
           P   ++ ++W WP   P   D      P  IP+     DP++  + G   V   Y++L++
Sbjct: 101 PVVERDALIWIWPG-DPALAD------PGAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVD 153
Query: 247 NLMDPAHLTYAHYGMMRT 264
           NLMD  H  Y H    +T
Sbjct: 154 NLMDLGHAQYVHRANAQT 171
>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386 Back     alignment and structure
>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412 Back     alignment and structure
>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409 Back     alignment and structure
>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394 Back     alignment and structure
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase Length = 447 Back     alignment and structure
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase Phe-352-Val Mutant. Length = 449 Back     alignment and structure
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase Length = 449 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
3gke_A349 DDMC; rieske cluster, non-heme mononuclear iron, o 9e-78
2zyl_A386 Possible oxidoreductase; KSHA, cholesterol, rieske 3e-70
3gkq_A389 Terminal oxygenase component of carbazole 1,9A- di 7e-56
3gcf_A394 Terminal oxygenase component of carbazole 1,9A- di 5e-55
2de6_A392 Terminal oxygenase component of carbazole; electro 1e-54
1z01_A446 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen 1e-50
3d89_A157 Rieske domain-containing protein; CAsp target, rie 5e-18
2i7f_A108 Ferredoxin component of dioxygenase; rieske ferred 3e-14
2qpz_A103 Naphthalene 1,2-dioxygenase system ferredoxin subu 9e-14
3dqy_A106 Toluene 1,2-dioxygenase system ferredoxin subunit; 1e-13
1fqt_A112 Rieske-type ferredoxin of biphenyl dioxygenase; 2F 2e-13
1vm9_A111 Toluene-4-monooxygenase system protein C; structur 9e-13
3gce_A121 Ferredoxin component of carbazole 1,9A- dioxygenas 2e-12
2de6_D115 Ferredoxin component of carbazole; electron transf 2e-12
2jza_A130 Nitrite reductase [NAD(P)H] small subunit; ISP dom 2e-11
2jo6_A113 Nitrite reductase [NAD(P)H] small subunit; all bet 3e-11
3n0q_A409 Putative aromatic-ring hydroxylating dioxygenase; 4e-10
3vca_A412 Ring-hydroxylating dioxygenase; rieske-type, monon 5e-09
2b1x_A470 Naphthalene dioxygenase large subunit; rieske non- 3e-08
3gzx_A457 Biphenyl dioxygenase subunit alpha; rieskie, non-h 4e-08
1uli_A460 Biphenyl dioxygenase large subunit; alpha3 BETA3 h 4e-08
3c0d_A119 Putative nitrite reductase NADPH (small subunit) o 4e-08
2gbw_A454 Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy 6e-08
2bmo_A447 Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 Back     alignment and structure
 Score =  247 bits (633), Expect = 9e-78
 Identities = 70/352 (19%), Positives = 120/352 (34%), Gaps = 39/352 (11%)

Query: 89  QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWG 148
            WY      +L ++ P  + +L   + ++    +       D CPHR APLS+G +   G
Sbjct: 8   AWYVAALPEELSEK-PLGRTILDTPLALYRQP-DGVVAALLDICPHRFAPLSDGILVN-G 64

Query: 149 RLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQC 208
            LQCPYHG  F G G C   P      P            +P   ++ ++W WP   P  
Sbjct: 65  HLQCPYHGLEFDGGGQCVHNPHGNGARPA-----SLNVRSFPVVERDALIWIWPG-DPAL 118

Query: 209 KDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVLMENLMDPAHLTYAHYGMMRTRK-- 266
            D       P      DP++  + G   V   Y++L++NLMD  H  Y H    +T    
Sbjct: 119 ADP---GAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQTDAFD 175

Query: 267 --PKVMLDREGGRPIKISFEKIDINGFIAKQDSESAK---------FLAPCVFVVYFDLL 315
              + ++  +G     +       +  +AK    +           +      + +    
Sbjct: 176 RLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFI--- 232

Query: 316 ENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFH 375
                  A  G  +E  +        I  P +  +    +   RNF I  D  +   +  
Sbjct: 233 -----AVAPEGTPKE--QSIHSRGTHILTPETEASCHYFFGSSRNFGID-DPEMDGVLRS 284

Query: 376 IGQNLILDSDLCLLHVEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKK 427
                ++  D  ++   ER+   V     +         D   V     ++K
Sbjct: 285 WQAQALVKEDKVVVEAIERRRAYVEANGIRP---AMLSCDEAAVRVSREIEK 333
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 Back     alignment and structure
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 Back     alignment and structure
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 Back     alignment and structure
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 Back     alignment and structure
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 Back     alignment and structure
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 Back     alignment and structure
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 Back     alignment and structure
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 Back     alignment and structure
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 Back     alignment and structure
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 Back     alignment and structure
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 Back     alignment and structure
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 Back     alignment and structure
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 Back     alignment and structure
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 Back     alignment and structure
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 Back     alignment and structure
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409 Back     alignment and structure
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412 Back     alignment and structure
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470 Back     alignment and structure
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457 Back     alignment and structure
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460 Back     alignment and structure
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 Back     alignment and structure
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454 Back     alignment and structure
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
3gke_A349 DDMC; rieske cluster, non-heme mononuclear iron, o 100.0
1z01_A446 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen 100.0
2zyl_A386 Possible oxidoreductase; KSHA, cholesterol, rieske 100.0
2de6_A392 Terminal oxygenase component of carbazole; electro 100.0
3n0q_A409 Putative aromatic-ring hydroxylating dioxygenase; 100.0
3vca_A412 Ring-hydroxylating dioxygenase; rieske-type, monon 100.0
3gcf_A394 Terminal oxygenase component of carbazole 1,9A- di 100.0
3gkq_A389 Terminal oxygenase component of carbazole 1,9A- di 100.0
2gbw_A454 Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy 100.0
2bmo_A447 Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni 100.0
2b1x_A470 Naphthalene dioxygenase large subunit; rieske non- 100.0
3gzx_A457 Biphenyl dioxygenase subunit alpha; rieskie, non-h 100.0
1uli_A460 Biphenyl dioxygenase large subunit; alpha3 BETA3 h 100.0
2qpz_A103 Naphthalene 1,2-dioxygenase system ferredoxin subu 99.93
2de6_D115 Ferredoxin component of carbazole; electron transf 99.93
1fqt_A112 Rieske-type ferredoxin of biphenyl dioxygenase; 2F 99.93
2i7f_A108 Ferredoxin component of dioxygenase; rieske ferred 99.93
3dqy_A106 Toluene 1,2-dioxygenase system ferredoxin subunit; 99.93
2jo6_A113 Nitrite reductase [NAD(P)H] small subunit; all bet 99.92
1vm9_A111 Toluene-4-monooxygenase system protein C; structur 99.92
3gce_A121 Ferredoxin component of carbazole 1,9A- dioxygenas 99.92
4aiv_A119 Probable nitrite reductase [NAD(P)H] small subuni; 99.92
3c0d_A119 Putative nitrite reductase NADPH (small subunit) o 99.92
2jza_A130 Nitrite reductase [NAD(P)H] small subunit; ISP dom 99.92
3d89_A157 Rieske domain-containing protein; CAsp target, rie 99.91
1rie_A129 Rieske iron-sulfur protein; oxidoreductase, cytoch 99.82
1rfs_A139 Rieske protein; iron-sulfur protein, electron tran 99.81
1g8k_B133 Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, 99.79
3azc_A133 Cytochrome B6-F complex iron-sulfur subunit; riesk 99.64
4aay_B175 AROB; oxidoreductase, rieske, iron sulfur, molybdo 99.76
2nwf_A141 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 99.69
1pp9_E196 Ubiquinol-cytochrome C reductase iron-sulfur SUBU 99.69
3cx5_E185 Cytochrome B-C1 complex subunit rieske, mitochondr 99.68
2qjy_C187 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 99.68
1nyk_A165 Rieske iron-sulfur protein; beta barrel, iron sulf 99.67
1vf5_D179 Rieske iron-sulfur protein; photosynthesis, membra 99.62
1jm1_A204 Rieske iron-sulfur protein SOXF; electron transpor 99.51
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-53  Score=442.75  Aligned_cols=320  Identities=20%  Similarity=0.312  Sum_probs=246.2

Q ss_pred             cccCCeEEeeecCCCCCCCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEEcccCCeEEcCCCc
Q 009261           85 DWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCPYHGWCFSGSGD  164 (539)
Q Consensus        85 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~CpyHGW~F~~~G~  164 (539)
                      .+++.||+||.++|| +|+++.++++|++|+|||+.+ |+++|++|+|||||++|+.|++++ +.|+||||||+||.+|+
T Consensus         4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~CpHrg~~L~~G~~~~-~~i~CpyHgw~fd~~G~   80 (349)
T 3gke_A            4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPD-GVVAALLDICPHRFAPLSDGILVN-GHLQCPYHGLEFDGGGQ   80 (349)
T ss_dssp             CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCGGGCEEET-TEEECTTTCCEECTTCC
T ss_pred             ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCC-CcEEEEeCcCCCCCcCCccCCccc-eEEEECCCCCEEcCCCC
Confidence            367899999999999 899999999999999999875 899999999999999999999975 79999999999999999


Q ss_pred             cccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCCCCcchhhhhcCCCCCCCCCCCCCCceEeeEEEEecChhhH
Q 009261          165 CKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDIAPQCKDIIKTKKPPHIPELDDPSFTKMFGSRDVPYGYEVL  244 (539)
Q Consensus       165 c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~~~~~~d~~~~~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~  244 (539)
                      |+.+|+...     ..+.+.++++|||++++|+||||+++++.. +   ...+|.++++++++|.......+++|||+.+
T Consensus        81 ~~~~P~~~~-----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~-~---~~~~p~~~~~~~~~~~~~~~~~~~~~nwk~~  151 (349)
T 3gke_A           81 CVHNPHGNG-----ARPASLNVRSFPVVERDALIWIWPGDPALA-D---PGAIPDFGCRVDPAYRTVGGYGHVDCNYKLL  151 (349)
T ss_dssp             EEECCSTTC-----CCCGGGCCCBCCEEEETTEEEECCSCGGGC-C---GGGSCCCGGGGCTTSEEEEEEEEESSCHHHH
T ss_pred             ccccCcccc-----ccccccccceeeEEEECCEEEEeeCCCCCC-c---ccccCCccccCCCCCEEEeEEEEEecCHHhH
Confidence            999996221     134568899999999999999999864321 1   1235666677777887665667999999999


Q ss_pred             hhhCCCCCCcccccccccccCC---CceEEeccCCe-eEEEEEeecCCCccc--------cc-CCcceeEEeccEEEEEe
Q 009261          245 MENLMDPAHLTYAHYGMMRTRK---PKVMLDREGGR-PIKISFEKIDINGFI--------AK-QDSESAKFLAPCVFVVY  311 (539)
Q Consensus       245 vEN~lD~~H~~~~H~~~~~~~~---p~~~~~r~~~~-~~~~~~~~~~~~gf~--------~~-~~~~~~~F~~P~~~~~~  311 (539)
                      +||++|++|++|+|+++++...   ...+++.++.. .....+......+|.        +. ..+...+|.+||++...
T Consensus       152 ~EN~~D~~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~  231 (349)
T 3gke_A          152 VDNLMDLGHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNF  231 (349)
T ss_dssp             HHHHHCGGGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEE
T ss_pred             HHhccccccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEE
Confidence            9999999999999999998654   23344444332 222333333322221        11 12357899999987765


Q ss_pred             eeecccccCCCCCCCCcccccccceEEEEEEEEeCCCCeEEEEEEeccCcccchhccchhHHHHHhhhhhh-hhhHHHHH
Q 009261          312 FDLLENQENGSASSGGAEEKLKQRRVAMIFICAPVSPGNSRVIWAFPRNFQIWIDKVVPRWIFHIGQNLIL-DSDLCLLH  390 (539)
Q Consensus       312 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~Pvspg~tr~~~~~~r~f~~~~~~~~prw~~h~~~~~Vl-dqD~~iL~  390 (539)
                      ....+.+          .....+..+.+++++||+++++||++|.+.|||..+...+.++|.  .++++|| +||+.+||
T Consensus       232 ~~~~~~g----------~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~~--~~~~~if~~ED~~ile  299 (349)
T 3gke_A          232 IAVAPEG----------TPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVLR--SWQAQALVKEDKVVVE  299 (349)
T ss_dssp             EEEEETT----------SCGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHHH--HHHHHHTTTHHHHHHH
T ss_pred             EecccCC----------CCCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHHH--HHHhhhhhhhhHHHHH
Confidence            5432221          111234457788999999999999999999999876555545554  4577888 99999999


Q ss_pred             HHHHHhhhcCCccccccccccCCCchHHHHHHHHHHHHhCC
Q 009261          391 VEERKIMAVGPANWQKACFVPTKSDNLVVGFRMWLKKYSGG  431 (539)
Q Consensus       391 ~qe~~l~~~g~~~w~~~~~vpt~aD~~VvafRrWl~k~~~g  431 (539)
                      .||+++...+   ....+++++++|+++++|||||++++..
T Consensus       300 ~Qq~~l~~~~---~~~~~~~~~~~D~~~v~~Rr~l~~l~~~  337 (349)
T 3gke_A          300 AIERRRAYVE---ANGIRPAMLSCDEAAVRVSREIEKLEQL  337 (349)
T ss_dssp             HHHHTHHHHH---HTTCCCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCC---ccccccccccccHHHHHHHHHHHHHHHH
Confidence            9999987642   1233568999999999999999999864
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Back     alignment and structure
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Back     alignment and structure
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Back     alignment and structure
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Back     alignment and structure
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Back     alignment and structure
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Back     alignment and structure
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Back     alignment and structure
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Back     alignment and structure
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Back     alignment and structure
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* Back     alignment and structure
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Back     alignment and structure
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Back     alignment and structure
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Back     alignment and structure
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Back     alignment and structure
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Back     alignment and structure
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* Back     alignment and structure
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Back     alignment and structure
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Back     alignment and structure
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Back     alignment and structure
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Back     alignment and structure
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Back     alignment and structure
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Back     alignment and structure
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 Back     alignment and structure
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* Back     alignment and structure
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* Back     alignment and structure
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} Back     alignment and structure
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} Back     alignment and structure
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A Back     alignment and structure
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... Back     alignment and structure
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* Back     alignment and structure
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* Back     alignment and structure
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A Back     alignment and structure
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* Back     alignment and structure
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 539
d1z01a1148 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m 4e-21
d2de6a1142 b.33.1.2 (A:1-142) Terminal oxygenase component of 1e-20
d1fqta_109 b.33.1.1 (A:) Rieske-type ferredoxin associated wi 2e-13
d2jo6a1108 b.33.1.3 (A:1-108) NADH-nitrite reductase small su 2e-12
d1ulia1154 b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub 4e-12
d2jzaa1122 b.33.1.3 (A:1-122) NADH-nitrite reductase small su 2e-10
d1rfsa_127 b.33.1.1 (A:) ISP subunit from chloroplast cytochr 2e-10
d1vm9a_109 b.33.1.1 (A:) Toluene-4-monooxygenase system prote 4e-09
d2b1xa1162 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp 8e-09
d1g8kb_133 b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc 1e-08
d2e74d1134 b.33.1.1 (D:46-179) ISP subunit from the cytochrom 8e-08
d2bmoa1150 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha 2e-07
d1nyka_156 b.33.1.1 (A:) Soluble Rieske protein {Thermus ther 1e-06
d1z01a2279 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8 0.002
>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 Back     information, alignment and structure

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

 Score = 87.5 bits (216), Expect = 4e-21
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 69  DPPETEPETNSQ-----EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNEN 123
           D      +T SQ     +  + + + WYP +   +L++      ++ G+ +V+       
Sbjct: 3   DARANNAKTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRRV--NG 60

Query: 124 EWRVFADACPHRLAPLSEGRID-QWGRLQCPYHGWCFSGSGDCKFIPQAPPDGPPVHTSK 182
           +     D C HR   LSE         + C YHG+ F                P      
Sbjct: 61  KVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKL---VTIVANPEDKLIG 117

Query: 183 KACAAVYPSAVQNGILWFWPD 203
                 YP    NG+++ +  
Sbjct: 118 TTGVTTYPVHEVNGMIFVFVR 138
>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 Back     information, alignment and structure
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 Back     information, alignment and structure
>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 Back     information, alignment and structure
>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154 Back     information, alignment and structure
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122 Back     information, alignment and structure
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 Back     information, alignment and structure
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 Back     information, alignment and structure
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162 Back     information, alignment and structure
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 Back     information, alignment and structure
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134 Back     information, alignment and structure
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150 Back     information, alignment and structure
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 Back     information, alignment and structure
>d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 279 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
d1ulia1154 Biphenyl dioxygenase large subunit BphA1, N-termin 99.97
d2de6a1142 Terminal oxygenase component of carbazole CarAa {J 99.96
d2b1xa1162 Naphthalene 1,2-dioxygenase alpha subunit, N-domai 99.96
d2bmoa1150 Nitrobenzene dioxygenase alpha subunit, NBDO-alpha 99.96
d1z01a1148 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen 99.96
d2jzaa1122 NADH-nitrite reductase small subunit NirD {Erwinia 99.92
d2jo6a1108 NADH-nitrite reductase small subunit NirD {Escheri 99.92
d1vm9a_109 Toluene-4-monooxygenase system protein C, TmoC {Ps 99.9
d1fqta_109 Rieske-type ferredoxin associated with biphenyl di 99.9
d3c0da1108 NADH-nitrite reductase small subunit NirD {Vibrio 99.88
d1rfsa_127 ISP subunit from chloroplast cytochrome bf complex 99.71
d2e74d1134 ISP subunit from the cytochrome b6f complex, solub 99.66
d1g8kb_133 Arsenite oxidase Rieske subunit {Alcaligenes faeca 99.64
d1z01a2279 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen 99.46
d1nyka_156 Soluble Rieske protein {Thermus thermophilus [TaxI 99.45
d3cx5e1129 ISP subunit of the mitochondrial cytochrome bc1-co 99.05
d1riea_127 ISP subunit of the mitochondrial cytochrome bc1-co 98.91
d1jm1a_202 Rieske protein II (SoxF) {Archaeon Sulfolobus acid 98.62
d2de6a2242 Terminal oxygenase component of carbazole CarAa {J 97.8
d2bmoa2287 Nitrobenzene dioxygenase alpha subunit, NBDO-alpha 97.32
d2b1xa2279 Naphthalene 1,2-dioxygenase alpha subunit, C-domai 97.14
d1ulia2281 Biphenyl dioxygenase large subunit BphA1, C-termin 93.54
d1wqla2279 Large subunit of cumene dioxygenase cumA1 {Pseudom 91.57
>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Back     information, alignment and structure
class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=99.97  E-value=3.3e-31  Score=242.51  Aligned_cols=130  Identities=19%  Similarity=0.239  Sum_probs=113.6

Q ss_pred             CCCCcccccccccccCCeEEeeecCCCCC-CCCEEEEEcCeEEEEEEeCCCCeEEEEccCCCCCCCCCCcccccCCCeEE
Q 009261           73 TEPETNSQEEKFDWFSQWYPLMPVCDLDK-RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ  151 (539)
Q Consensus        73 ~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~r~~~~G~~~a~~d~CpHrgapLs~G~v~~~g~l~  151 (539)
                      ..++.++.|.+.+|++.||+||+++||++ |+.++++++|++|+|+|+++ |+++||.|+|||||++|++|.....+.|+
T Consensus        23 ~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~-g~i~af~N~C~HRG~~L~~~~~g~~~~l~  101 (154)
T d1ulia1          23 TDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKN-GEIRVFLNQCRHRGMRICRADGGNAKSFT  101 (154)
T ss_dssp             TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSCEE
T ss_pred             CCHHHHHHHHHHHhccCCEEEEEhhhCCCCcceeeeecCCcceeEEeecc-cceeeeecccccCCceeeecCCCccceEE
Confidence            35788899999999999999999999975 89999999999999999875 99999999999999999987765447899


Q ss_pred             cccCCeEEcCCCccccCCCCCCCCCCCCCcccccceeeeEEEeCCeEEEcCCC
Q 009261          152 CPYHGWCFSGSGDCKFIPQAPPDGPPVHTSKKACAAVYPSAVQNGILWFWPDI  204 (539)
Q Consensus       152 CpyHGW~F~~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~g~vwV~~~~  204 (539)
                      ||||||+|+.+|+|+.+|..+...+ ....++.+|..++|.+++|+||||+++
T Consensus       102 CpYHgW~f~~~G~~~~iP~~~~~~~-~~~~~~~~L~~~~v~~~~G~Ifv~~d~  153 (154)
T d1ulia1         102 CSYHGWAYDTGGNLVSVPFEEQAFP-GLRKEDWGPLQARVETYKGLIFANWDA  153 (154)
T ss_dssp             CTTTCCEECTTCCEEECTTHHHHCT-TCCGGGSSCCEEEEEEETTEEEEECCT
T ss_pred             eeeceeEEecCCccccCCcccccCC-CCChHHCCCeEEeEEEECCEEEEEeCC
Confidence            9999999999999999997543211 134556889999999999999999974
>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Back     information, alignment and structure
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Back     information, alignment and structure
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Back     information, alignment and structure
>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Back     information, alignment and structure
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Back     information, alignment and structure
>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Back     information, alignment and structure
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Back     information, alignment and structure
>d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Back     information, alignment and structure
>d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Back     information, alignment and structure
>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Back     information, alignment and structure
>d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Back     information, alignment and structure
>d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure