Citrus Sinensis ID: 009322

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
Protein Sequence
MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQHSMETFNLPSPTPCSETERQPARTGEYGLQIKSADEPIAVSDDLVIACHSSPNNGVTFESSV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHccccccccHHHHHHccccccEEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEccc
Coil and Loop (DISEMBL)
maskligtapreaenpyeLSIRQAFDALesklrppfaltvpnpqeyMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIvggdfsdgnLWLCFELVSLFLGkwdclleeepLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDlvlnpsefktpgfsdisqlyhlrtssryfltritPEMETQLRFLLTHVKLGSQKRYQAWFAKKflfgpereTLIVDIIRFIccghhpsneiiqsdiipRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVdnydvdrkdvIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQhsmetfnlpsptpcseterqpartgeyglqiksadepiavsdDLVIAchsspnngvtfessv
Flexible Loop (DISEMBL)
maskligtapreaenpyeLSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEfktpgfsdisqlyHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATlvhkgvvqsldvlvSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQHSMETFNLPSPTPCSETERQPARTGEYGLQIKSADEPIAVSDDLVIACHsspnngvtfessv
Low Complexity Region (SEG)
MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYAlfvsllvkvvkelyvklFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQHSMETFNLPSPTPCSETERQPARTGEYGLQIKSADEPIAVSDDLVIACHSSPNNGVTFESSV
Disordered region (IsUnstruct)
***********************AFDAL**KLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQ*************************************IAVSDDLVIAC**************
Disordered Region (DISOPRED)
*ASKLIGTAPREAENPYELSIRQAFDALESKLRPP*****P**QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQV******************************************************************************
Disordered Region (DISEMBL)
MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQHSMETFN*****************GEYGLQIKSADEPIAVSDDLVIACHSSPNNGVTFESSV
Disordered Region (DISPRO)
*ASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPN***********************************************AVSDDLVIACHSSPNN**TF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQHSMETFNLPSPTPCSETERQPARTGEYGLQIKSADEPIAVSDDLVIACHSSPNNGVTFESSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	537	2.2.26 [Sep-21-2011]
Q55EZ4	1520	Integrator complex subuni	yes	no	0.744	0.263	0.426	4e-91
Q7TPD0	1041	Integrator complex subuni	yes	no	0.793	0.409	0.383	2e-89
Q5RE70	1043	Integrator complex subuni	yes	no	0.735	0.378	0.397	4e-88
Q68E01	1043	Integrator complex subuni	yes	no	0.735	0.378	0.396	1e-86
Q1LXC9	1017	Integrator complex subuni	yes	no	0.791	0.417	0.385	1e-85
B4JPR2	1083	Integrator complex subuni	N/A	no	0.752	0.373	0.386	3e-82
B4KJ11	1079	Integrator complex subuni	N/A	no	0.752	0.374	0.384	3e-82
B4LQY8	1079	Integrator complex subuni	N/A	no	0.811	0.404	0.373	4e-82
B4NP05	1086	Integrator complex subuni	N/A	no	0.752	0.372	0.386	5e-82
B4ISV0	1072	Integrator complex subuni	N/A	no	0.752	0.376	0.388	3e-81

>sp|Q55EZ4|INT3_DICDI Integrator complex subunit 3 homolog OS=Dictyostelium discoideum GN=ints3 PE=3 SV=1

 Score =  335 bits (860), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/408 (42%), Positives = 254/408 (62%), Gaps = 8/408 (1%)

Query: 52  AILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKE 111
           AIL G       +  + K L     D  ALF SLL K++ + + KL D+ + Q++W+  E
Sbjct: 106 AILLGSPQNIALSHQYFKSLTFFTKDSLALFCSLLKKLIADKFQKLNDTPRQQVVWIINE 165

Query: 112 MINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLG--KWDCLLEEEPLVLSSA 169
           +I  +    + +   +LR I GG+F+  NL L   ++++FL   +W   L   PL++ + 
Sbjct: 166 LIATNHQDCESVTSIILRHIYGGNFTSKNLSLSHSMLNMFLTHRQW---LNSRPLLIPTI 222

Query: 170 LYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVP 229
           LY FLRL+ DH               EI+FC+ +L+ +FQ CL IGRDLIRLLQ L    
Sbjct: 223 LYNFLRLIQDHISRPQGLHNPTHLKDEINFCLDLLKNKFQECLVIGRDLIRLLQYLSTKT 282

Query: 230 V-FRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLG 288
           + F  +WKDL   P+ F  PG+ DI Q     T   +  +R++PEME Q+ ++L  VK G
Sbjct: 283 IEFEQLWKDLNSKPTTF-APGYYDIIQSMKTPTPKHFLQSRLSPEMELQVLYILKEVKFG 341

Query: 289 SQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQ 348
           +QKRYQ WF  K+L  PE E+LI DIIR+ICC +HP N ++ SDI+PRWA+IGWLLK C+
Sbjct: 342 NQKRYQQWFVTKYLVTPESESLIPDIIRYICCVYHPPNHVLCSDIVPRWAIIGWLLKHCK 401

Query: 349 KNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF-LLVD 407
            +     +KL+LF DWL+F+  +D+IMNIEPA+LLM  S+ +Y DMT  L++F+   L+D
Sbjct: 402 SDAWRNYSKLSLFLDWLYFEPKIDSIMNIEPAILLMAGSVKKYADMTIDLVEFIVGTLLD 461

Query: 408 NYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLR 455
           +YD+ RKD I +G+ ++FAT++ KGVVQSL  +    +L P L E+++
Sbjct: 462 SYDIQRKDAIRQGIHNSFATVLEKGVVQSLSHVFPPDSLGPSLFEKVK 509

Dictyostelium discoideum (taxid: 44689)

>sp|Q7TPD0|INT3_MOUSE Integrator complex subunit 3 OS=Mus musculus GN=Ints3 PE=1 SV=2

 Score =  330 bits (845), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/438 (38%), Positives = 271/438 (61%), Gaps = 12/438 (2%)

Query: 19  LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
           +S R+A DAL        A     P ++ ++   +   VL EP  A+   + L  +  DG
Sbjct: 65  VSEREANDALN-------AYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDG 117

Query: 79  YALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
             + ++ + +++ E Y+KL D+ + QL+W+ +E++    +G DG+ ++ ++QI GGD + 
Sbjct: 118 MNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTA 177

Query: 139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
            N+WL   ++ +   + + +L+   ++++ A+YT+LRL+ DH      ++L  L+  E+D
Sbjct: 178 KNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRLIVDH---HGTAQLQTLRQKEVD 233

Query: 199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
           FC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +WKD++ NP    +P F+ I QL  
Sbjct: 234 FCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQAL-SPQFTGILQLLQ 292

Query: 259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
            RTS ++   R+TP+MET+L F+ + V+ G QKRYQ WF +++L  P+ ++L  D+IR+I
Sbjct: 293 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYI 352

Query: 319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
           C   HPSNE++ SDI+PRWA+IGWLL +C  N   +NAKLALFYDWLFF    D+IMNIE
Sbjct: 353 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPEKDSIMNIE 412

Query: 379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
           PA+L+M  S+  +  +T TLLDF+  ++ N+    +  + +GV S+   +V K V+  L 
Sbjct: 413 PAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLA 472

Query: 439 VLVSCKTLSPYLKERLRK 456
            L     L   L+  LR+
Sbjct: 473 PLFDNPKLDKELRSMLRE 490

Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. The SOSS complex is required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) and ATM-dependent signaling pathways. In the SOSS complex, it is required for the assembly of the complex and for stabilization of the complex at DNA damage sites.

Mus musculus (taxid: 10090)

>sp|Q5RE70|INT3_PONAB Integrator complex subunit 3 OS=Pongo abelii GN=INTS3 PE=2 SV=1

 Score =  325 bits (834), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 159/400 (39%), Positives = 256/400 (64%), Gaps = 5/400 (1%)

Query: 57  VLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVS 116
           +L EP  A+   + L  +  DG  + ++ + +++ E Y+KL D+ + QL+W+ +E++   
Sbjct: 98  ILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSG 157

Query: 117 AVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRL 176
            +G DG+ ++ ++QI GGD +  N+WL   ++ +   + + +L+   ++++ A+YT+LRL
Sbjct: 158 VLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRL 216

Query: 177 LADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWK 236
           + DH      ++L  L+  E+DFC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +WK
Sbjct: 217 IVDH---HGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWK 273

Query: 237 DLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAW 296
           D++ NP    +P F+ I QL   RTS ++   R+TP+MET+L F+ + V+ G QKRYQ W
Sbjct: 274 DIIHNPQAL-SPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDW 332

Query: 297 FAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNA 356
           F +++L  P+ ++L  D+IR+IC   HPSNE++ SDI+PRWA+IGWLL +C  N   +NA
Sbjct: 333 FQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTACTSNVAASNA 392

Query: 357 KLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDV 416
           KLALFYDWLFF    D+IMNIEPA+L+M  S+  +  +T TLLDF+  ++ N+    +  
Sbjct: 393 KLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGH 452

Query: 417 IARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRK 456
           + +GV S+   +V K V+  L  L     L   L+  LR+
Sbjct: 453 VRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLRE 492

Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. The SOSS complex is required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) and ATM-dependent signaling pathways. In the SOSS complex, it is required for the assembly of the complex and for stabilization of the complex at DNA damage sites.

Pongo abelii (taxid: 9601)

>sp|Q68E01|INT3_HUMAN Integrator complex subunit 3 OS=Homo sapiens GN=INTS3 PE=1 SV=1

 Score =  321 bits (822), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/401 (39%), Positives = 256/401 (63%), Gaps = 6/401 (1%)

Query: 57  VLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVS 116
           +L EP  A+   + L  +  DG  + ++ + +++ E Y+KL D+ + QL+W+ +E++   
Sbjct: 97  ILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSG 156

Query: 117 AVGFDGLLVSLLRQIVGG-DFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLR 175
            +G DG+ ++ ++QI GG D +  N+WL   ++ +   + + +L+   ++++ A+YT+LR
Sbjct: 157 VLGADGVCMTFMKQIAGGGDVTAKNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLR 215

Query: 176 LLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIW 235
           L+ DH      ++L  L+  E+DFC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +W
Sbjct: 216 LIVDH---HGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLW 272

Query: 236 KDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQA 295
           KD++ NP    +P F+ I QL   RTS ++   R+TP+MET+L F+ + V+ G QKRYQ 
Sbjct: 273 KDIIHNPQAL-SPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQD 331

Query: 296 WFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETN 355
           WF +++L  P+ ++L  D+IR+IC   HPSNE++ SDI+PRWA+IGWLL +C  N   +N
Sbjct: 332 WFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASN 391

Query: 356 AKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKD 415
           AKLALFYDWLFF    D+IMNIEPA+L+M  S+  +  +T TLLDF+  ++ N+    + 
Sbjct: 392 AKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEG 451

Query: 416 VIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRK 456
            + +GV S+   +V K V+  L  L     L   L+  LR+
Sbjct: 452 HVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLRE 492

Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. The SOSS complex is required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) and ATM-dependent signaling pathways. In the SOSS complex, it is required for the assembly of the complex and for stabilization of the complex at DNA damage sites.

Homo sapiens (taxid: 9606)

>sp|Q1LXC9|INT3_DANRE Integrator complex subunit 3 OS=Danio rerio GN=ints3 PE=2 SV=1

 Score =  317 bits (812), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/438 (38%), Positives = 268/438 (61%), Gaps = 13/438 (2%)

Query: 19  LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
           LS R+A DAL        A     PQ++ ++   +   +L EP  A+   + L  +  DG
Sbjct: 44  LSEREANDALT-------AHVCKGPQQHEEVCLGLFTLLLTEPPQAQRCYRDLTLVNRDG 96

Query: 79  YALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
             + +  + +++ E ++KL D  + QL+W+ +E++    +G DG+L++L++QI GGD S 
Sbjct: 97  MNVVLMKINQILMEKFLKLQDVCRTQLVWLVRELVKSGVIGADGVLMTLMKQIAGGDISS 156

Query: 139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
            NLWL   ++ + + + + +L+   LV  S LYT+LRL+ DH      + L  L+  E+D
Sbjct: 157 KNLWLAENVLDILVDQREWVLKSGMLVAMS-LYTYLRLIVDH----GTTSLLPLRQREVD 211

Query: 199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
           FC+ +LRE+F  C  IGRDL+RLLQ++  +P    +W+DL+ +P    +P F+ I QL  
Sbjct: 212 FCIGLLRERFMECFIIGRDLVRLLQNVARIPEMELVWRDLLHSPQTL-SPQFTGILQLLT 270

Query: 259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
            RTS ++   R+TP+MET+L F+ + V+ G QKRYQ WF +++L   E ++L  D+IR+I
Sbjct: 271 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTAESQSLRCDLIRYI 330

Query: 319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
           C   HPSNE++ SDI+PRWA+IGWLL +C  N   +NAKLALFYDWLFF+   D+IMNIE
Sbjct: 331 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFNPEKDSIMNIE 390

Query: 379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
           PA+L+M  S+  +  +T TLLDF+  ++ ++    +  + +GV ++   ++ K V+  L 
Sbjct: 391 PAILVMHHSMKPHPAITATLLDFMCRIIPHFFPPLEGQVRQGVFNSLNFIMEKRVLAHLA 450

Query: 439 VLVSCKTLSPYLKERLRK 456
            L     L   L+  LR+
Sbjct: 451 PLFDNPKLDRELRSMLRE 468

Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. Required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs). In the SOSS complex, it is required for the assembly of the complex and for stabilization of the complex at DNA damage sites.

Danio rerio (taxid: 7955)

>sp|B4JPR2|INT3_DROGR Integrator complex subunit 3 homolog OS=Drosophila grimshawi GN=IntS3 PE=3 SV=1

 Score =  306 bits (783), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/414 (38%), Positives = 247/414 (59%), Gaps = 10/414 (2%)

Query: 44  QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
           +++ +++   LY +L +P  A    + +  +  DG  + V+ L  +V E Y KL ++ + 
Sbjct: 67  KQHEEISIGFLYIILTDPAMAPKTYRDITLVSRDGMNVIVANLTLLVAEKYAKLTETARR 126

Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
           QLIWV +E +    +  + ++ + LRQ  GGD S  NL+L   L+ +F+ ++   LE  P
Sbjct: 127 QLIWVLREFVKHQVLSVENVIWNCLRQAGGGDVSHKNLYLVESLLDIFI-EYRAWLETNP 185

Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
            ++ S++Y+F+RL+ DH     N  L  L+  E+ F + ++R++F   + +GRD +RLLQ
Sbjct: 186 FLVQSSVYSFVRLIEDHA----NPALISLRQKEVKFTISLIRDRFHDIIPLGRDFVRLLQ 241

Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
           ++  +P F  +W+D++ NP     P F+ I  L  +RTS R+   R+ PEME +L FL +
Sbjct: 242 NVARIPEFELLWRDILYNPKSLH-PTFNGIWHLLQIRTSRRFLQCRLLPEMERKLHFLAS 300

Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
            VK G+QKRYQ WF  K+   PE  +L  D+IRFI    HP+N+++ SDIIPRWA+IGWL
Sbjct: 301 SVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 360

Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
           + SC       NAKL+LFYDWLFFD + DNIMNIEP +L+M  SI  +  ++ TLLDFL 
Sbjct: 361 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 420

Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
            +  N+ V  +D I  GV ++   ++ K V+ +L  L      SP L   LR +
Sbjct: 421 RITKNFYVKNEDRIRLGVYNSLKLILDKQVIPNLHPLFE----SPKLDRELRNL 470

Drosophila grimshawi (taxid: 7222)

>sp|B4KJ11|INT3_DROMO Integrator complex subunit 3 homolog OS=Drosophila mojavensis GN=IntS3 PE=3 SV=1

 Score =  306 bits (783), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 247/414 (59%), Gaps = 10/414 (2%)

Query: 44  QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
           +++ +++   LY +L +P  A    + +  +  DG  + V+ L  +V E Y KL ++ + 
Sbjct: 62  KQHEEISIGFLYIILTDPAMAPKTYRDITLVSRDGMNVIVANLTLLVAEKYTKLTETARR 121

Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
           QLIWV +E +    +  + ++ + LRQ  GGD S  NL+L   L+ +F+ ++   LE  P
Sbjct: 122 QLIWVLREFVKHQVLSVENVIWNCLRQAGGGDVSHKNLFLVESLLDIFI-EYRAWLETNP 180

Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
            ++ S++Y+F+RL+ DH     N  L  L+  E+ F + ++R++F   + +GRD +RLLQ
Sbjct: 181 FLVQSSVYSFVRLIEDHA----NPALISLRQKEVKFTISLIRDRFHDIIPLGRDFVRLLQ 236

Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
           ++  +P F  +W+D++ NP     P F+ I  L  +RTS R+   R+ PEME +L FL +
Sbjct: 237 NVARIPEFEQLWRDILYNPKSLH-PTFNGIWHLLQIRTSRRFLQCRLLPEMERKLHFLAS 295

Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
            VK G+QKRYQ WF  K+   PE  +L  D+IRFI    HP+N+++ SDIIPRWA+IGWL
Sbjct: 296 SVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 355

Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
           + SC       NAKL+LFYDWLFFD + DNIMNIEP +L+M  SI  +  ++ TLLDFL 
Sbjct: 356 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 415

Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
            +  N+ +  +D I  GV ++   ++ K V+ +L  L      SP L   LR +
Sbjct: 416 RITKNFYIKNEDKIRLGVYNSLKLILDKQVIPNLHPLFE----SPKLDRELRNL 465

Drosophila mojavensis (taxid: 7230)

>sp|B4LQY8|INT3_DROVI Integrator complex subunit 3 homolog OS=Drosophila virilis GN=IntS3 PE=3 SV=1

 Score =  305 bits (782), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/450 (37%), Positives = 261/450 (58%), Gaps = 14/450 (3%)

Query: 12  EAENPYE---LSIRQAFDALESK-LRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVH 67
           E E  +E   +S++Q    L  K +       V   +++ +++   LY +L +P  A   
Sbjct: 26  EIEEKFERSYVSLQQQIAGLSDKEMHDMLTQIVCKEKQHEEISIGFLYIILTDPAMAPKT 85

Query: 68  IKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSL 127
            + +  +  DG  + V+ L  +V E Y KL ++ + QLIWV +E +    +  + ++ + 
Sbjct: 86  YRDITLVSRDGMNVIVANLTLLVAEKYAKLTETARRQLIWVLREFVKHQVLSVENVIWNC 145

Query: 128 LRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNS 187
           LRQ  GGD S  NL+L   L+ +F+ ++   LE  P ++ S++Y+F+RL+ DH     N 
Sbjct: 146 LRQAGGGDVSHKNLFLVESLLDIFI-EYRAWLEAIPFLVQSSVYSFVRLIEDHA----NP 200

Query: 188 KLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKT 247
            L  L+  E+ F + ++R++FQ  + +GRD +RLLQ++  +P F  +W+D++ NP     
Sbjct: 201 ALMPLRQKEVKFTISLIRDRFQDIIPLGRDFVRLLQNVARIPEFELLWRDILCNPKSLH- 259

Query: 248 PGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPER 307
           P F+ I  L  +RTS R+   R+ PEME +L FL + VK G+QKRYQ WF  K+   PE 
Sbjct: 260 PTFNGIWHLLQIRTSRRFLQCRLLPEMERKLHFLASSVKFGNQKRYQDWFQDKYFATPES 319

Query: 308 ETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFF 367
            +L  D+IRFI    HP+N+++ SDIIPRWA+IGWL+ SC       NAKL+LFYDWLFF
Sbjct: 320 HSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWLISSCTNPIASANAKLSLFYDWLFF 379

Query: 368 DESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFAT 427
           D + DNIMNIEP +L+M  SI  +  ++ TLLDFL  +  N+ +  +D I  GV ++   
Sbjct: 380 DPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLCRITKNFYIKNEDKIRLGVYNSLKL 439

Query: 428 LVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
           ++ K V+ +L  L      SP L   LR +
Sbjct: 440 ILDKQVIPNLHPLFE----SPKLDRELRNL 465

Drosophila virilis (taxid: 7244)

>sp|B4NP05|INT3_DROWI Integrator complex subunit 3 homolog OS=Drosophila willistoni GN=IntS3 PE=3 SV=1

 Score =  305 bits (782), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/414 (38%), Positives = 250/414 (60%), Gaps = 10/414 (2%)

Query: 44  QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
           +++ +++  +LY +L +P  A    + +  +  DG ++ V+ L  +V E Y KL +    
Sbjct: 64  KQHDEMSIGLLYIMLTDPIMAPKTYRDITLVSRDGMSVIVANLTLLVAEKYSKLTEGACR 123

Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
           Q+IWV +E +    +  + ++ + LRQ  GGD S  NL+L   L+ +F+ ++   LE  P
Sbjct: 124 QIIWVLREFVKHQVLSVENVIWNCLRQAGGGDVSHKNLYLVENLLDIFI-EYRNWLETNP 182

Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
            ++ S +Y+++RL+ DH    +N  L  L+  E++F + ++R++FQ  + +GRD +RLLQ
Sbjct: 183 FLVQSIVYSYVRLIEDH----SNPALASLRQKEVNFTISLIRDRFQDVIPLGRDFVRLLQ 238

Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
           ++  +P F  +W+D++ NP     P F+ I QL  +RTS R+   R+ PEME +L FL +
Sbjct: 239 NVARIPEFEQLWRDVLYNPKSLH-PTFNGIWQLLQIRTSRRFLQCRLLPEMERKLHFLAS 297

Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
            VK G+QKRYQ WF  K+   PE  +L  D+IRFI    HP+N+++ SDIIPRWA+IGWL
Sbjct: 298 SVKFGNQKRYQDWFQDKYFSTPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 357

Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
           + SC       NAKL+LFYDWLFFD + DNIMNIEP +L+M  SI  +  ++ TLLDFL 
Sbjct: 358 ISSCTNPIASANAKLSLFYDWLFFDPTKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 417

Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
            +  N+ V  +D I  GV ++   ++ K V+ +L  L      SP L   LR +
Sbjct: 418 RITKNFYVKYEDKIRMGVYNSLKLILDKQVIPNLQPLFE----SPKLDRELRNL 467

Drosophila willistoni (taxid: 7260)

>sp|B4ISV0|INT3_DROYA Integrator complex subunit 3 homolog OS=Drosophila yakuba GN=IntS3 PE=3 SV=1

 Score =  303 bits (775), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/414 (38%), Positives = 246/414 (59%), Gaps = 10/414 (2%)

Query: 44  QEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKN 103
           +++ +++   LY +L +P  A    + +  +  DG    V+ L  +V E Y KL +  + 
Sbjct: 62  KQHEEISIGFLYIMLTDPSMAPKTYRDVTLVSRDGMNGIVTNLTFLVAEKYTKLTEVARR 121

Query: 104 QLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEP 163
           QLIW+ +E +    +  + ++ + LRQ  GGD S  NL+L   L+ +F+ ++   LE  P
Sbjct: 122 QLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVSSRNLFLIESLLDIFI-EFRTWLEGNP 180

Query: 164 LVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQ 223
            ++ S +Y+F+RL+ DH     N  L  L+  E+ F + ++RE+F   + +GRD +RLLQ
Sbjct: 181 FLVQSTVYSFVRLIEDHA----NPALMSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQ 236

Query: 224 DLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLT 283
           ++  +P F  +W+DL+ NP       F+ I QL H+RTS R+   R+ PEME ++ FL +
Sbjct: 237 NVARIPEFEQLWRDLIFNPKILHQ-TFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLAS 295

Query: 284 HVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWL 343
            VK G+QKRYQ WF +K+   PE  +L  D+IRFI    HP+N+++ SDIIPRWA+IGWL
Sbjct: 296 SVKFGNQKRYQDWFQEKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWL 355

Query: 344 LKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLF 403
           + SC       NAKL+LFYDWLFFD + DNIMNIEP +L+M  SI  +  ++ TLLDFL 
Sbjct: 356 ISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLC 415

Query: 404 LLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
            +  N+ V  +D I  GV ++   ++ K V+ +L  L      SP L   LR +
Sbjct: 416 RITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFE----SPKLDRELRNL 465

Drosophila yakuba (taxid: 7245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
224055319	995	predicted protein [Populus trichocarpa]	0.988	0.533	0.679	0.0
449442713	1058	PREDICTED: uncharacterized protein LOC10	0.918	0.465	0.669	0.0
449476269	588	PREDICTED: integrator complex subunit 3	0.975	0.891	0.640	0.0
225436606	928	PREDICTED: integrator complex subunit 3	0.940	0.544	0.649	0.0
255572201	982	conserved hypothetical protein [Ricinus	0.891	0.487	0.631	1e-180
357480433	560	Integrator complex subunit-like protein	0.849	0.814	0.672	1e-177
297804840	726	hypothetical protein ARALYDRAFT_355343 [	0.873	0.646	0.616	1e-170
15233503	508	integrator complex subunit 3 [Arabidopsi	0.798	0.844	0.615	1e-158
302786760	452	hypothetical protein SELMODRAFT_102541 [	0.817	0.971	0.461	1e-115
296083836	563	unnamed protein product [Vitis vinifera]	0.506	0.483	0.639	3e-93

>gi|224055319|ref|XP_002298478.1| predicted protein [Populus trichocarpa] gi|222845736|gb|EEE83283.1| predicted protein [Populus trichocarpa]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/540 (67%), Positives = 432/540 (80%), Gaps = 9/540 (1%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           MASKL+     EA+N  ELS++QAF+ LE KLRPPF LT+P+PQEY +LN AILYGVL E
Sbjct: 1   MASKLLKLTAYEAKNELELSLKQAFEELEPKLRPPFPLTIPSPQEYSRLNLAILYGVLTE 60

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
           P  AK HIKHLHAIVTDGYALFVSL+VK+V +LY KL DSVK+QL+WV KEM++V  VGF
Sbjct: 61  PLLAKTHIKHLHAIVTDGYALFVSLIVKIVNDLYGKLVDSVKDQLVWVVKEMVDVLGVGF 120

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           DG LV LLRQIVGGDFSDGNLWLCFELVSLF  KWDCL+E+ P VL+SALY +LR+LADH
Sbjct: 121 DGFLVCLLRQIVGGDFSDGNLWLCFELVSLFSSKWDCLVEDAPFVLTSALYVYLRVLADH 180

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
           C++ T++K++ LK LEI+FCVKMLREQF LC+KIGRDLIRLL+DLVHVP FRAIW DLV 
Sbjct: 181 CKVSTDAKMESLKRLEIEFCVKMLREQFNLCMKIGRDLIRLLRDLVHVPEFRAIWNDLVS 240

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           NPSEF+T GFSDISQLY  RTSSRYFL RITPEMETQLRFLL HVK G+QKRYQ WFAKK
Sbjct: 241 NPSEFRTEGFSDISQLYCSRTSSRYFLLRITPEMETQLRFLLMHVKFGNQKRYQVWFAKK 300

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLAL 360
           FLFG ERETL+VDIIRFICC HHPSNEIIQSDI+PRWAVIGWLLKSC++ +VE N KLAL
Sbjct: 301 FLFGQERETLVVDIIRFICCAHHPSNEIIQSDIVPRWAVIGWLLKSCREKYVEANMKLAL 360

Query: 361 FYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARG 420
           FYDWLFFDE +DNIMNIEPAMLLMVCSIP+YID+TH+LL+FL  + +NY+ DR  VI RG
Sbjct: 361 FYDWLFFDEKIDNIMNIEPAMLLMVCSIPKYIDITHSLLEFLLFIAENYEEDRNYVIRRG 420

Query: 421 VKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVP-NELHLLHISQHSME 479
           + SA   LV KGVV+S+D+L SC  LSP+L+E LRK+ +L + +  NEL   H+  HS+ 
Sbjct: 421 LSSAMRMLVQKGVVRSMDILTSCDALSPFLREGLRKL-ILRLNIERNELQPAHLPPHSVS 479

Query: 480 TFNLPSPTPCSET----ERQPARTGEYGLQIKSADEPIAVSDDLVIACHSSPNNGVTFES 535
             +L + +  + T    E+Q A+  E  L  + A   I +S DL     S P+N VT ES
Sbjct: 480 RSSLQNVSHLAITTPAPEQQSAKIVEVRLSKEPAGSSIPISGDLFTT--SCPSN-VTIES 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442713|ref|XP_004139125.1| PREDICTED: uncharacterized protein LOC101216642 [Cucumis sativus]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/502 (66%), Positives = 391/502 (77%), Gaps = 9/502 (1%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           M SKLI  A  EAEN +E+S+RQAF+ LE KLRPPF L +P+PQEY +LN AILYG+LCE
Sbjct: 1   MVSKLIHVAAYEAENHFEVSLRQAFELLEPKLRPPFCLKIPDPQEYKELNWAILYGILCE 60

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
           PH  K HIKHLHAIVTDGY L   LL KVV ELY+KL D  K Q+  VTKEMI V AVG 
Sbjct: 61  PHLGKTHIKHLHAIVTDGYGLICYLLRKVVNELYLKLIDGAKCQIFMVTKEMIKVCAVGV 120

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           D +L+SLLRQIVGGDF +GNLWLCFEL SL L  W  LLEE P V+ SALYTFLRLLADH
Sbjct: 121 DAVLISLLRQIVGGDFGEGNLWLCFELTSLLLNSWSYLLEELPEVMPSALYTFLRLLADH 180

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
           CR  ++ KL  LK LEI FC+K++REQF  CLKIGRD IRLLQDLV+VP FR +WKDL++
Sbjct: 181 CRF-SDEKLGPLKQLEIAFCIKVIREQFHFCLKIGRDFIRLLQDLVYVPEFRDVWKDLLI 239

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           NPS F++PGFSDIS  YH RTSSRYFL RI+PEME QLRFL+T+VKLGSQ RYQ WFAKK
Sbjct: 240 NPSNFRSPGFSDISNFYHTRTSSRYFLLRISPEMEAQLRFLMTNVKLGSQNRYQIWFAKK 299

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLAL 360
           FL GPE ET+I DI+RFICC HHP NE+IQSDIIPRWAVIGWLL  C+KN+++ N KLAL
Sbjct: 300 FLHGPESETIISDIVRFICCAHHPPNEVIQSDIIPRWAVIGWLLTCCRKNYIKANVKLAL 359

Query: 361 FYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARG 420
           FYDWLFFD+  D IMNIEPAMLLMV SIPRYID+ HTLL+FLFLLVDNYDV RKD IA G
Sbjct: 360 FYDWLFFDDKTDKIMNIEPAMLLMVFSIPRYIDIVHTLLEFLFLLVDNYDVQRKDKIALG 419

Query: 421 VKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVL-EVRVPNELHLLHISQHSME 479
           V SAF+ L+ KGV+ SLD L+S   +SP L++RLR +    + +V NE+ L  +  HS +
Sbjct: 420 VSSAFSALIEKGVISSLDNLISFGGISPLLRDRLRVLSSCKKFQVSNEVQLF-VPDHSAK 478

Query: 480 TFNLPSPT-PCS---ETERQPA 497
              LPS T  C+   ++E  P+
Sbjct: 479 P--LPSLTKSCAGMIDSESHPS 498

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476269|ref|XP_004154690.1| PREDICTED: integrator complex subunit 3 homolog [Cucumis sativus]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/534 (64%), Positives = 401/534 (75%), Gaps = 10/534 (1%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           M SKLI  A  EAEN +E+S+RQAF+ LE KLRPPF L +P+PQEY +LN AILYG+LCE
Sbjct: 1   MVSKLIHVAAYEAENHFEVSLRQAFELLEPKLRPPFCLKIPDPQEYKELNWAILYGILCE 60

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
           PH  K HIKHLHAIVTDGY L   LL KVV ELY+KL D  K Q+  VTKEMI V AVG 
Sbjct: 61  PHLGKTHIKHLHAIVTDGYGLICYLLRKVVNELYLKLIDGAKCQIFMVTKEMIKVCAVGV 120

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           D +L+SLLRQIVGGDF +GNLWLCFEL SL L  W  LLEE P V+ SALYTFLRLLADH
Sbjct: 121 DAVLISLLRQIVGGDFGEGNLWLCFELASLLLNSWSYLLEELPEVMPSALYTFLRLLADH 180

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
           CR  ++ KL  LK LEI FC+K++REQF  CLKIGRD IRLLQDLV+VP FR +WKDL++
Sbjct: 181 CRF-SDEKLGPLKQLEIAFCIKVIREQFHFCLKIGRDFIRLLQDLVYVPEFRDVWKDLLI 239

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           NPS F++PGFSDIS  YH RTSSRYFL RI+PEME QLRFL+T+VKLGSQ RYQ WFAKK
Sbjct: 240 NPSNFRSPGFSDISNFYHTRTSSRYFLLRISPEMEAQLRFLMTNVKLGSQNRYQIWFAKK 299

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLAL 360
           FL GPE ET+I DI+RFICC HHP NE+IQSDIIPRWAVIGWLL  C+KN+++ N KLAL
Sbjct: 300 FLHGPESETIISDIVRFICCAHHPPNEVIQSDIIPRWAVIGWLLTCCRKNYIKANVKLAL 359

Query: 361 FYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARG 420
           FYDWLFFD+  D IMNIEPAMLLMV SIPRYID+ HTLL+FLFLLVDNYDV RKD IA G
Sbjct: 360 FYDWLFFDDKTDKIMNIEPAMLLMVFSIPRYIDIVHTLLEFLFLLVDNYDVQRKDKIALG 419

Query: 421 VKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVL-EVRVPNELHLLHISQHSME 479
           V SAF+ L+ KGV+ SLD L+S   +SP L++RLR +    + +V NE+ L  +  HS +
Sbjct: 420 VSSAFSALIEKGVISSLDNLISFGGISPLLRDRLRVLSSCKKFQVSNEVQLF-VPDHSAK 478

Query: 480 TFNLPSPT-PCS---ETERQPARTGEYGLQIKSADEPIAVSDDLVIACHSSPNN 529
              LPS T  C+   ++E  P+   E      S    + + +D   + HS   N
Sbjct: 479 P--LPSLTKSCAGMIDSESHPSCI-EGNADSTSVGVSVPIVEDASASYHSFATN 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436606|ref|XP_002275456.1| PREDICTED: integrator complex subunit 3 homolog [Vitis vinifera]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/534 (64%), Positives = 410/534 (76%), Gaps = 29/534 (5%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           MASKL+     EA++  ELS+RQAF+ LE +LRPPF LT+P P+EY+QLN AILYGVLCE
Sbjct: 1   MASKLLKIGSLEAQSQIELSLRQAFELLEPQLRPPFPLTIPTPEEYLQLNWAILYGVLCE 60

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
           PHFAK+ IK+LHAIVTDGY LFVSLL  +V ELY KL +S + QLIW+  EMI VSA G 
Sbjct: 61  PHFAKIQIKYLHAIVTDGYCLFVSLLTTIVNELYFKLVESARIQLIWLVSEMIYVSAEGI 120

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           DG+LVSLLRQI               LVSLFL KW+ L+EE PLVL S LYT+LR+LADH
Sbjct: 121 DGVLVSLLRQI---------------LVSLFLSKWNWLVEEGPLVLRSGLYTYLRVLADH 165

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
           CR   +SKL+ LK +EI+FC+++LREQF LCLKIGRDLIRLLQDLVHVP FRA+WKDLVL
Sbjct: 166 CRFPGDSKLEALKRIEIEFCIRVLREQFHLCLKIGRDLIRLLQDLVHVPEFRAVWKDLVL 225

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           NP EFK  GF D+SQLY  RTSSRYFL RITPEME+QLRFLLTHVKLGSQKR+QAWF +K
Sbjct: 226 NPGEFKIQGFEDVSQLYRERTSSRYFLLRITPEMESQLRFLLTHVKLGSQKRHQAWFMRK 285

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLAL 360
           FL G ERETLI DI+RFICCGHHPSN+IIQSD++PRWAVIGWLLKSC+K++VE N KLAL
Sbjct: 286 FLCGSERETLICDIVRFICCGHHPSNDIIQSDVMPRWAVIGWLLKSCRKSYVEANVKLAL 345

Query: 361 FYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARG 420
           FYDWLFFDE +DNIMNIEPAMLLMV S+P+Y+DMTHTLL+FL LLVDNYD++RKD+I RG
Sbjct: 346 FYDWLFFDERIDNIMNIEPAMLLMVNSVPKYVDMTHTLLEFLLLLVDNYDIERKDIIVRG 405

Query: 421 VKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQHSMET 480
           V SAF  LV +GVV S+ VL SC  LSP LKE L +   L+  V  E+   H+ + S+ +
Sbjct: 406 VASAFNMLVRRGVVGSIHVLTSCDALSPSLKEWLGRF--LKAGVSKEVQPAHLPRPSVPS 463

Query: 481 FNLPSPTPCSETERQPARTGEY---------GLQIKSADEPIAVSDDLVIACHS 525
             LPS T  SETE   A  GE          G+  K+ D  + +S + V++C S
Sbjct: 464 SILPSLT-TSETE--TAVMGELIASKCATNDGVGTKAFDASVPISVEPVMSCSS 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572201|ref|XP_002527040.1| conserved hypothetical protein [Ricinus communis] gi|223533602|gb|EEF35340.1| conserved hypothetical protein [Ricinus communis]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 332/526 (63%), Positives = 387/526 (73%), Gaps = 47/526 (8%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           MASK++     EA+N +ELS+ QAF+ LE KLRPPF+L +P+PQEY+QLNRAIL GVL +
Sbjct: 1   MASKILKIGNYEAKNHFELSLMQAFEELEPKLRPPFSLAIPSPQEYLQLNRAILCGVLTD 60

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
              AK +IK+LHAIVTDGYA FVSL VK+V +LYVKL DSVK QLIWV KEM++V AVGF
Sbjct: 61  SQMAKTYIKYLHAIVTDGYAFFVSLTVKIVNDLYVKLDDSVKGQLIWVAKEMVDVLAVGF 120

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           DGLLVSLLRQI+GGDFSDGNLWL                                     
Sbjct: 121 DGLLVSLLRQIIGGDFSDGNLWL------------------------------------- 143

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
              L N KL+ LK LEI+FCVKMLREQF LC+KIGRDLIRLLQDLVHVP FRAIWKDLVL
Sbjct: 144 ---LNNVKLESLKLLEIEFCVKMLREQFHLCMKIGRDLIRLLQDLVHVPAFRAIWKDLVL 200

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           NP EF+TPGFSDISQLY  RTSS YFL RITPEMETQLRFLL HVK GSQKR+Q WF KK
Sbjct: 201 NPGEFRTPGFSDISQLYCCRTSSCYFLLRITPEMETQLRFLLMHVKFGSQKRHQTWFFKK 260

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLAL 360
           FLF PERET+IVDI+RFICC HHPSNE IQSDIIPRWAV+GWLLK+C KN+V+ N KLAL
Sbjct: 261 FLFKPERETVIVDIVRFICCAHHPSNETIQSDIIPRWAVVGWLLKTCGKNYVQANVKLAL 320

Query: 361 FYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARG 420
           FYDWLFFDE +DNIMNIEP MLL+VCSI +YIDMT++LL+FL LLV+NYD+DR  VI+RG
Sbjct: 321 FYDWLFFDERIDNIMNIEPGMLLIVCSITKYIDMTNSLLEFLLLLVENYDLDRPHVISRG 380

Query: 421 VKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI-QVLEVRVPNELHLLHISQHSME 479
           + SAF  LV KGV+ SLDVL SC  LSP LK+RL ++    +  + ++L   ++  +S+ 
Sbjct: 381 ILSAFNVLVQKGVIHSLDVLTSCDALSPCLKQRLGRLWSSSKPGLTSKLQPANVPHYSVP 440

Query: 480 TFNLPSPTPCSET-----ERQPARTGEYGLQIKSADEPIAVSDDLV 520
              L + + C ET     E+ PA   +  L  K  D  I  SDDLV
Sbjct: 441 PLTLQNLS-CVETTKPSPEQSPACEEKVRLNTKPIDTSITASDDLV 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480433|ref|XP_003610502.1| Integrator complex subunit-like protein [Medicago truncatula] gi|355511557|gb|AES92699.1| Integrator complex subunit-like protein [Medicago truncatula]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 308/458 (67%), Positives = 371/458 (81%), Gaps = 2/458 (0%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           M   L  TAP EAEN  E+S++Q+  +L+  L+PPF+LT+PNP EY+QLN AIL+ +L +
Sbjct: 1   MVPNLTLTAPHEAENQIEISLKQSLQSLQPSLKPPFSLTIPNPDEYIQLNHAILHAILTQ 60

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
           PHF+K H+KHLHAI+TDGYA F++LL  +V  LY KL  SVK+QLIWVT EMI VS +G+
Sbjct: 61  PHFSKTHVKHLHAIITDGYATFLNLLFNIVHHLYPKLLGSVKHQLIWVTDEMIQVSGIGY 120

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           D LL+SLLRQIVGGDFSD NLWLC +LV+L L KWDCLLEE P VL S LY FLR+LADH
Sbjct: 121 DALLISLLRQIVGGDFSDDNLWLCEKLVTLLLDKWDCLLEEMPHVLCSGLYVFLRVLADH 180

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
           CR +   K + LK LE+ FCVK++RE+F LC+KIGRD IRLLQDLVHVP F++IWKDL+L
Sbjct: 181 CR-VNGEKFESLKRLEVHFCVKIVREEFHLCMKIGRDFIRLLQDLVHVPEFKSIWKDLML 239

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           NPS F T GFS +SQ+Y  RTSSRY L RITP METQLRFLLTHVKLG+QKR+  WFA+K
Sbjct: 240 NPSSFNTLGFSGVSQIYLTRTSSRYALLRITPAMETQLRFLLTHVKLGNQKRHLMWFARK 299

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNH-VETNAKLA 359
           FL  P++ET++VDI+RFICC HHP NEIIQSDI+PRWAVIGWLL + +K   VE NAKLA
Sbjct: 300 FLNEPDKETVVVDIVRFICCAHHPPNEIIQSDIVPRWAVIGWLLTTFRKKSCVEANAKLA 359

Query: 360 LFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIAR 419
           LFYDWLFFDE VDNIMNIEPA+LLMV SI +Y++MT+TLL+FL LLVDNYD++ KD+I +
Sbjct: 360 LFYDWLFFDEKVDNIMNIEPAILLMVHSITQYVEMTNTLLEFLLLLVDNYDMEHKDIIVK 419

Query: 420 GVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
           GV  AF  L  KGV+QSLD+L SC TLSP LKE L ++
Sbjct: 420 GVSLAFRFLESKGVIQSLDILTSCPTLSPSLKEGLSRL 457

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804840|ref|XP_002870304.1| hypothetical protein ARALYDRAFT_355343 [Arabidopsis lyrata subsp. lyrata] gi|297316140|gb|EFH46563.1| hypothetical protein ARALYDRAFT_355343 [Arabidopsis lyrata subsp. lyrata]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 298/483 (61%), Positives = 374/483 (77%), Gaps = 14/483 (2%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           + SKLI  +  E EN  ELSIRQAF++L+ KLRPPF+L +P PQEY++LN+AI+YGVLCE
Sbjct: 6   VTSKLIRDSLHEVENQLELSIRQAFESLQPKLRPPFSLEIPEPQEYLELNKAIVYGVLCE 65

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
           P+++K HIKHLHA+VTDGYA F SLL+ +V EL+VKL DS K QLIWVTKEMI+VS+VG 
Sbjct: 66  PNYSKTHIKHLHALVTDGYAFFTSLLIGIVVELHVKLVDSAKIQLIWVTKEMIDVSSVGI 125

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           + LLVSLLR+I  GD+ D N+WLC ELVSLFL KWDCLLE+ PL+L+SALY+FLRLLADH
Sbjct: 126 EDLLVSLLRRIGSGDYGDQNVWLCSELVSLFLEKWDCLLEDMPLMLTSALYSFLRLLADH 185

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
            R+L  +KL+ +K LEI FCVKM REQ  L +KIGRDLI LLQDL HV  FR IW DLV 
Sbjct: 186 YRVLGVAKLENVKRLEIKFCVKMFREQLHLSMKIGRDLILLLQDLSHVSEFREIWNDLVS 245

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           N            S +Y L+TSSRYFL RITPEMETQLRFLL +VKLGS KR+Q WF KK
Sbjct: 246 N----------HCSDIYQLKTSSRYFLLRITPEMETQLRFLLGNVKLGSHKRHQMWFLKK 295

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKN-HVETNAKLA 359
           FL GPE+ETL++DI+RF+CC  HP+NEII+S+I+PRWA+IGWLL+ C++N H+E + KLA
Sbjct: 296 FLLGPEKETLLIDIVRFVCCVIHPTNEIIRSEIMPRWAIIGWLLELCRQNHHIERSVKLA 355

Query: 360 LFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIAR 419
           LFYDWLFFDE  DNIMN+EPA LLMV SIP+Y  +TH+LL+F+  LV+ YD+  +D+I R
Sbjct: 356 LFYDWLFFDERFDNIMNVEPAALLMVWSIPQYPHITHSLLEFVLHLVETYDISSRDIIVR 415

Query: 420 GVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVL-EVRVPNELHLLHISQHSM 478
           G+ SAF  +  KGV++SLD+ ++   L+  LK++L  +    +V+VP  LH    S  S 
Sbjct: 416 GLTSAFREIERKGVIRSLDIFLTNPALAADLKKKLANLLTCHQVKVPVNLH--QFSVPSK 473

Query: 479 ETF 481
           +TF
Sbjct: 474 QTF 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233503|ref|NP_193195.1| integrator complex subunit 3 [Arabidopsis thaliana] gi|2244815|emb|CAB10238.1| hypothetical protein [Arabidopsis thaliana] gi|7268165|emb|CAB78501.1| hypothetical protein [Arabidopsis thaliana] gi|332658063|gb|AEE83463.1| integrator complex subunit 3 [Arabidopsis thaliana]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/455 (61%), Positives = 350/455 (76%), Gaps = 26/455 (5%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           + SKLI  +  E EN  ELS+RQAF+ L+ KLRPPF+L +P+PQEY++LN+AI+YGVLCE
Sbjct: 6   VTSKLIRVSLHEVENQLELSLRQAFENLQPKLRPPFSLELPDPQEYLELNKAIVYGVLCE 65

Query: 61  PHFAKVHIKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGF 120
           P+ +K HIKHLHA+VTDGYA F SLL+ +V ELYVKL DS K QLIWVTKEMI+VS+VG 
Sbjct: 66  PNSSKTHIKHLHALVTDGYAFFTSLLIGIVVELYVKLVDSAKIQLIWVTKEMIDVSSVGI 125

Query: 121 DGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADH 180
           + L+VSLLR+I                +SLFL KW+CLL++ PLVL+SALY+FLRLLADH
Sbjct: 126 EDLVVSLLRRIG---------------ISLFLEKWECLLDDSPLVLTSALYSFLRLLADH 170

Query: 181 CRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVL 240
            R+L   KL+ +K LEI FCVKM REQ  L LKIGRDLI LLQDL HV  FR IW DLV 
Sbjct: 171 YRVLGVVKLENVKRLEIKFCVKMFREQLHLSLKIGRDLILLLQDLSHVSEFREIWNDLVS 230

Query: 241 NPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKK 300
           N            S++Y L+TSSRYFL RITPEMETQLRFLL +VKLGS KR+Q WF KK
Sbjct: 231 N----------HCSEIYQLKTSSRYFLLRITPEMETQLRFLLGNVKLGSHKRHQIWFLKK 280

Query: 301 FLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKN-HVETNAKLA 359
           FL GPE+ETL++DI+RF+CC  HP+NEII+S+I+PRWA+IGWLL+ C++N H+E +  LA
Sbjct: 281 FLLGPEKETLLIDIVRFVCCVIHPTNEIIRSEIMPRWAIIGWLLELCRQNHHIERSVMLA 340

Query: 360 LFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIAR 419
           LFYDWLFFDE +DNIMN+EPA LLMV SIP+Y  +TH+LL+FL  LV+ YD+ R+D I R
Sbjct: 341 LFYDWLFFDERIDNIMNVEPAALLMVWSIPQYPHITHSLLEFLLHLVETYDITRRDTIVR 400

Query: 420 GVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERL 454
           G+ SAF  +  KGV++SLD+ ++   L+P LK++L
Sbjct: 401 GLTSAFREIERKGVIRSLDIFLANPALAPDLKKKL 435

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302786760|ref|XP_002975151.1| hypothetical protein SELMODRAFT_102541 [Selaginella moellendorffii] gi|302791577|ref|XP_002977555.1| hypothetical protein SELMODRAFT_53489 [Selaginella moellendorffii] gi|300154925|gb|EFJ21559.1| hypothetical protein SELMODRAFT_53489 [Selaginella moellendorffii] gi|300157310|gb|EFJ23936.1| hypothetical protein SELMODRAFT_102541 [Selaginella moellendorffii]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/470 (46%), Positives = 309/470 (65%), Gaps = 31/470 (6%)

Query: 1   MASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCE 60
           M SKL+     EA++  E+ + QA+   +++L   +  TVP P +   L +A+LY +L +
Sbjct: 1   MTSKLLHRGSHEAQDELEIILSQAYSTFQAQLSASYLSTVP-PAQRGPLTQALLYAILIQ 59

Query: 61  PHFAKVH-------------IKHLHAIVTDGYALFVSLLVKVVKELYVKLFDSVKNQLIW 107
           P                   I  L  I TDGYA FV LL+++V + Y KL +  + Q+IW
Sbjct: 60  PQGGGGAGASSATSSSATSLINQLTTITTDGYAAFVGLLLRLVNDSYAKLLEHPRGQIIW 119

Query: 108 VTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLS 167
           + K++I   A   D L + LLRQI+    +    W+                     +L+
Sbjct: 120 LLKQLIEFYATDVDNLCLLLLRQIMLEVLTTKISWVT----------------SNHGLLT 163

Query: 168 SALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVH 227
           SA+YT+LRLL DH  +  NS ++ L+  EI FC  M+RE FQ CL IGRDLIRLLQD+  
Sbjct: 164 SAVYTYLRLLPDHS-MAKNSSVNELRQAEIKFCASMIREHFQECLGIGRDLIRLLQDVSS 222

Query: 228 VPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKL 287
           +  F AIW+DL+ NP+ F+ P F+DI QLY ++T +RYF +R+TPEME Q++F+LTHV++
Sbjct: 223 IAEFDAIWRDLLANPASFRVPSFTDIGQLYVVKTHTRYFQSRLTPEMEAQIKFMLTHVRM 282

Query: 288 GSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSC 347
           GSQ+RYQ WF ++FL  PE ETL+ D+IR++CC HHPSN+I+QSDI+PRWA+IGWLLK C
Sbjct: 283 GSQRRYQGWFTQRFLSTPESETLVCDLIRYVCCVHHPSNQILQSDILPRWALIGWLLKCC 342

Query: 348 QKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVD 407
           + NHVE NAKLAL YDWLFF    DNIMNIEP +L+M  SIP+Y+DMT++LL+FLFLL++
Sbjct: 343 KSNHVEANAKLALLYDWLFFVPKTDNIMNIEPGILVMFQSIPKYVDMTNSLLEFLFLLME 402

Query: 408 NYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKI 457
           +YD  RK+++ RGV ++   LV KGVV++L+ L +   ++  L+E+L ++
Sbjct: 403 HYDPPRKELLHRGVAASVEILVGKGVVRNLEPLATAPAIALPLREKLSQL 452

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083836|emb|CBI24224.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/286 (63%), Positives = 218/286 (76%), Gaps = 14/286 (4%)

Query: 249 GFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERE 308
           GF D+SQLY  RTSSRYFL RITPEME+QLRFLLTHVKLGSQKR+QAWF +KFL G ERE
Sbjct: 134 GFEDVSQLYRERTSSRYFLLRITPEMESQLRFLLTHVKLGSQKRHQAWFMRKFLCGSERE 193

Query: 309 TLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFD 368
           TLI DI+RFICCGHHPSN+IIQSD++PRWAVIGWLLKSC+K++VE N KLALFYDWLFFD
Sbjct: 194 TLICDIVRFICCGHHPSNDIIQSDVMPRWAVIGWLLKSCRKSYVEANVKLALFYDWLFFD 253

Query: 369 ESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATL 428
           E +DNIMNIEPAMLLMV S+P+Y+DMTHTLL+FL LLVDNYD++RKD+I RGV SAF  L
Sbjct: 254 ERIDNIMNIEPAMLLMVNSVPKYVDMTHTLLEFLLLLVDNYDIERKDIIVRGVASAFNML 313

Query: 429 VHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRVPNELHLLHISQHSMETFNLPSPTP 488
           V +GVV S+ VL SC  LSP LKE L +   L+  V  E+   H+ + S+ +  LPS T 
Sbjct: 314 VRRGVVGSIHVLTSCDALSPSLKEWLGRF--LKAGVSKEVQPAHLPRPSVPSSILPSLT- 370

Query: 489 CSETERQPARTGEY---------GLQIKSADEPIAVSDDLVIACHS 525
            SETE   A  GE          G+  K+ D  + +S + V++C S
Sbjct: 371 TSETET--AVMGELIASKCATNDGVGTKAFDASVPISVEPVMSCSS 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
TAIR|locus:2129935	508	emb2739 "AT4G14590" [Arabidops	0.601	0.635	0.589	3.8e-101
UNIPROTKB|E1BN70	1040	INTS3 "Uncharacterized protein	0.793	0.409	0.372	6.8e-79
MGI|MGI:2140050	1041	Ints3 "integrator complex subu	0.793	0.409	0.374	8.7e-79
RGD|1304593	1041	Ints3 "integrator complex subu	0.793	0.409	0.374	8.7e-79
UNIPROTKB|F1SFW4	1040	INTS3 "Uncharacterized protein	0.793	0.409	0.374	4.8e-78
UNIPROTKB|Q5RE70	1043	INTS3 "Integrator complex subu	0.735	0.378	0.387	7.9e-78
UNIPROTKB|Q68E01	1043	INTS3 "Integrator complex subu	0.735	0.378	0.386	7.1e-77
ZFIN|ZDB-GENE-060503-634	1017	ints3 "integrator complex subu	0.791	0.417	0.381	1.9e-76
FB|FBgn0262117	1068	IntS3 "Integrator 3" [Drosophi	0.845	0.425	0.346	2.7e-72

TAIR|locus:2129935 emb2739 "AT4G14590" [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 197/334 (58%), Positives = 250/334 (74%)

Query:   148 VSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQ 207
             +SLFL KW+CLL++ PLVL+SALY+FLRLLADH R+L   KL+ +K LEI FCVKM REQ
Sbjct:   138 ISLFLEKWECLLDDSPLVLTSALYSFLRLLADHYRVLGVVKLENVKRLEIKFCVKMFREQ 197

Query:   208 FQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFL 267
               L LKIGRDLI LLQDL HV  FR IW DLV N            S++Y L+TSSRYFL
Sbjct:   198 LHLSLKIGRDLILLLQDLSHVSEFREIWNDLVSN----------HCSEIYQLKTSSRYFL 247

Query:   268 TRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNE 327
              RITPEMETQLRFLL +VKLGS KR+Q WF KKFL GPE+ETL++DI+RF+CC  HP+NE
Sbjct:   248 LRITPEMETQLRFLLGNVKLGSHKRHQIWFLKKFLLGPEKETLLIDIVRFVCCVIHPTNE 307

Query:   328 IIQSDIIPRWAVIGWLLKSCQKNH-VETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVC 386
             II+S+I+PRWA+IGWLL+ C++NH +E +  LALFYDWLFFDE +DNIMN+EPA LLMV 
Sbjct:   308 IIRSEIMPRWAIIGWLLELCRQNHHIERSVMLALFYDWLFFDERIDNIMNVEPAALLMVW 367

Query:   387 SIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTL 446
             SIP+Y  +TH+LL+FL  LV+ YD+ R+D I RG+ SAF  +  KGV++SLD+ ++   L
Sbjct:   368 SIPQYPHITHSLLEFLLHLVETYDITRRDTIVRGLTSAFREIERKGVIRSLDIFLANPAL 427

Query:   447 SPYLKERLRKIQVLEVRVPNELHLLHISQHSMET 480
             +P LK++L  +          ++L  +S  S +T
Sbjct:   428 APDLKKKLANLLSCHQEKTVHVNLNQVSVLSKQT 461

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

UNIPROTKB|E1BN70 INTS3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 163/438 (37%), Positives = 260/438 (59%)

Query:    19 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
             +S R+A DAL        A     P ++ ++   +   VL EP  A+   + L  +  DG
Sbjct:    64 VSEREANDALN-------AYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDG 116

Query:    79 YAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
                                 D+ + QL+W+ +E++    +G DG+ ++ ++QI GGD + 
Sbjct:   117 MNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTA 176

Query:   139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
              N+WL   ++ + + + + +L+   ++++ A+YT+LRL+ DH      ++L  L+  E+D
Sbjct:   177 KNIWLAESVLDILMEQREWVLKSS-ILIAMAVYTYLRLIVDHHG---TAQLQALRQKEVD 232

Query:   199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
             FC+ +LRE+F  CL +GRDL+RLLQ++  +P F  +WKD++ NP    +P F+ I QL  
Sbjct:   233 FCISLLRERFMECLMVGRDLVRLLQNVARIPEFELLWKDIIHNPQAL-SPQFTGILQLLQ 291

Query:   259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
              RTS ++   R+TP+MET+L F+ + V+ G QKRYQ WF +++L  P+ ++L  D+IR+I
Sbjct:   292 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYI 351

Query:   319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
             C   HPSNE++ SDI+PRWA+IGWLL +C  N   +NAKLALFYDWLFF    D+IMNIE
Sbjct:   352 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIE 411

Query:   379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
             PA+L+M  S+  +  +T TLLDF+  ++ N+    +  + +GV S+   +V K V+  L 
Sbjct:   412 PAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLA 471

Query:   439 VLVSCKTLSPYLKERLRK 456
              L     L   L+  LR+
Sbjct:   472 PLFDNPKLDKELRAMLRE 489

GO:0070876 "SOSS complex" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

MGI|MGI:2140050 Ints3 "integrator complex subunit 3" [Mus musculus (taxid:10090)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 164/438 (37%), Positives = 259/438 (59%)

Query:    19 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
             +S R+A DAL        A     P ++ ++   +   VL EP  A+   + L  +  DG
Sbjct:    65 VSEREANDALN-------AYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDG 117

Query:    79 YAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
                                 D+ + QL+W+ +E++    +G DG+ ++ ++QI GGD + 
Sbjct:   118 MNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTA 177

Query:   139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
              N+WL   ++ +   + + +L+   ++++ A+YT+LRL+ DH      ++L  L+  E+D
Sbjct:   178 KNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRLIVDHHG---TAQLQTLRQKEVD 233

Query:   199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
             FC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +WKD++ NP    +P F+ I QL  
Sbjct:   234 FCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQAL-SPQFTGILQLLQ 292

Query:   259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
              RTS ++   R+TP+MET+L F+ + V+ G QKRYQ WF +++L  P+ ++L  D+IR+I
Sbjct:   293 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYI 352

Query:   319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
             C   HPSNE++ SDI+PRWA+IGWLL +C  N   +NAKLALFYDWLFF    D+IMNIE
Sbjct:   353 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPEKDSIMNIE 412

Query:   379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
             PA+L+M  S+  +  +T TLLDF+  ++ N+    +  + +GV S+   +V K V+  L 
Sbjct:   413 PAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLA 472

Query:   439 VLVSCKTLSPYLKERLRK 456
              L     L   L+  LR+
Sbjct:   473 PLFDNPKLDKELRSMLRE 490

GO:0000075 "cell cycle checkpoint" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0010212 "response to ionizing radiation" evidence=ISO

GO:0016180 "snRNA processing" evidence=ISO

GO:0032039 "integrator complex" evidence=ISO

GO:0070876 "SOSS complex" evidence=ISO

RGD|1304593 Ints3 "integrator complex subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 164/438 (37%), Positives = 259/438 (59%)

Query:    19 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
             +S R+A DAL        A     P ++ ++   +   VL EP  A+   + L  +  DG
Sbjct:    65 VSEREANDALN-------AYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDG 117

Query:    79 YAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
                                 D+ + QL+W+ +E++    +G DG+ ++ ++QI GGD + 
Sbjct:   118 MNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTA 177

Query:   139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
              N+WL   ++ +   + + +L+   ++++ A+YT+LRL+ DH      ++L  L+  E+D
Sbjct:   178 KNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRLIVDHHG---TAQLQTLRQKEVD 233

Query:   199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
             FC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +WKD++ NP    +P F+ I QL  
Sbjct:   234 FCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQAL-SPQFTGILQLLQ 292

Query:   259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
              RTS ++   R+TP+MET+L F+ + V+ G QKRYQ WF +++L  P+ ++L  D+IR+I
Sbjct:   293 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYI 352

Query:   319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
             C   HPSNE++ SDI+PRWA+IGWLL +C  N   +NAKLALFYDWLFF    D+IMNIE
Sbjct:   353 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIE 412

Query:   379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
             PA+L+M  S+  +  +T TLLDF+  ++ N+    +  + +GV S+   +V K V+  L 
Sbjct:   413 PAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLA 472

Query:   439 VLVSCKTLSPYLKERLRK 456
              L     L   L+  LR+
Sbjct:   473 PLFDNPKLDKELRSMLRE 490

GO:0000075 "cell cycle checkpoint" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0010212 "response to ionizing radiation" evidence=IEA;ISO

GO:0016180 "snRNA processing" evidence=IEA;ISO

GO:0032039 "integrator complex" evidence=IEA;ISO

GO:0070876 "SOSS complex" evidence=IEA;ISO

UNIPROTKB|F1SFW4 INTS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 164/438 (37%), Positives = 258/438 (58%)

Query:    19 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
             +S R+A DAL        A     P ++ ++   +   VL EP  A+   + L  +  DG
Sbjct:    64 VSEREANDALN-------AYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDG 116

Query:    79 YAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
                                 D+ + QL+W+ +E++    +G DG+ ++ ++QI GGD + 
Sbjct:   117 MNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTA 176

Query:   139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
              N+WL   ++ +   + + +L+   ++++ A+YT+LRL+ DH      + L  L+  E+D
Sbjct:   177 KNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRLIVDHHG---TTPLLALRQKEVD 232

Query:   199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
             FC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +WKD++ NP    +P F+ I QL  
Sbjct:   233 FCISLLRERFMECLMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQAL-SPQFTGILQLLQ 291

Query:   259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
              RTS ++   R+TP+MET+L F+ + V+ G QKRYQ WF +++L  P+ ++L  D+IR+I
Sbjct:   292 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYI 351

Query:   319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
             C   HPSNE++ SDI+PRWA+IGWLL +C  N   +NAKLALFYDWLFF    D+IMNIE
Sbjct:   352 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIE 411

Query:   379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
             PA+L+M  S+  +  +T TLLDF+  ++ N+    +  + +GV S+   +V K V+  L 
Sbjct:   412 PAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLA 471

Query:   439 VLVSCKTLSPYLKERLRK 456
              L     L   L+  LR+
Sbjct:   472 PLFDNPKLDKELRAMLRE 489

GO:0070876 "SOSS complex" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|Q5RE70 INTS3 "Integrator complex subunit 3" [Pongo abelii (taxid:9601)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 155/400 (38%), Positives = 244/400 (61%)

Query:    57 VLCEPHFAKVHIKHLHAIVTDGYAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVS 116
             +L EP  A+   + L  +  DG                    D+ + QL+W+ +E++   
Sbjct:    98 ILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSG 157

Query:   117 AVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRL 176
              +G DG+ ++ ++QI GGD +  N+WL   ++ +   + + +L+   ++++ A+YT+LRL
Sbjct:   158 VLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLRL 216

Query:   177 LADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWK 236
             + DH      ++L  L+  E+DFC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +WK
Sbjct:   217 IVDHHG---TAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWK 273

Query:   237 DLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAW 296
             D++ NP    +P F+ I QL   RTS ++   R+TP+MET+L F+ + V+ G QKRYQ W
Sbjct:   274 DIIHNPQAL-SPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDW 332

Query:   297 FAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNA 356
             F +++L  P+ ++L  D+IR+IC   HPSNE++ SDI+PRWA+IGWLL +C  N   +NA
Sbjct:   333 FQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTACTSNVAASNA 392

Query:   357 KLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDV 416
             KLALFYDWLFF    D+IMNIEPA+L+M  S+  +  +T TLLDF+  ++ N+    +  
Sbjct:   393 KLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGH 452

Query:   417 IARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRK 456
             + +GV S+   +V K V+  L  L     L   L+  LR+
Sbjct:   453 VRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLRE 492

GO:0000075 "cell cycle checkpoint" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0010212 "response to ionizing radiation" evidence=ISS

GO:0070876 "SOSS complex" evidence=ISS

UNIPROTKB|Q68E01 INTS3 "Integrator complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 155/401 (38%), Positives = 244/401 (60%)

Query:    57 VLCEPHFAKVHIKHLHAIVTDGYAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVS 116
             +L EP  A+   + L  +  DG                    D+ + QL+W+ +E++   
Sbjct:    97 ILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSG 156

Query:   117 AVGFDGLLVSLLRQIVGG-DFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLR 175
              +G DG+ ++ ++QI GG D +  N+WL   ++ +   + + +L+   ++++ A+YT+LR
Sbjct:   157 VLGADGVCMTFMKQIAGGGDVTAKNIWLAESVLDILTEQREWVLKSS-ILIAMAVYTYLR 215

Query:   176 LLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIW 235
             L+ DH      ++L  L+  E+DFC+ +LRE+F  CL IGRDL+RLLQ++  +P F  +W
Sbjct:   216 LIVDHHG---TAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLW 272

Query:   236 KDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQA 295
             KD++ NP    +P F+ I QL   RTS ++   R+TP+MET+L F+ + V+ G QKRYQ 
Sbjct:   273 KDIIHNPQAL-SPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQD 331

Query:   296 WFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETN 355
             WF +++L  P+ ++L  D+IR+IC   HPSNE++ SDI+PRWA+IGWLL +C  N   +N
Sbjct:   332 WFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASN 391

Query:   356 AKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKD 415
             AKLALFYDWLFF    D+IMNIEPA+L+M  S+  +  +T TLLDF+  ++ N+    + 
Sbjct:   392 AKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEG 451

Query:   416 VIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRK 456
              + +GV S+   +V K V+  L  L     L   L+  LR+
Sbjct:   452 HVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLRE 492

GO:0070876 "SOSS complex" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000075 "cell cycle checkpoint" evidence=IMP

GO:0010212 "response to ionizing radiation" evidence=IMP

GO:0016180 "snRNA processing" evidence=IDA

GO:0032039 "integrator complex" evidence=IDA

ZFIN|ZDB-GENE-060503-634 ints3 "integrator complex subunit 3" [Danio rerio (taxid:7955)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 167/438 (38%), Positives = 259/438 (59%)

Query:    19 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDG 78
             LS R+A DAL + +          PQ++ ++   +   +L EP  A+   + L  +  DG
Sbjct:    44 LSEREANDALTAHV-------CKGPQQHEEVCLGLFTLLLTEPPQAQRCYRDLTLVNRDG 96

Query:    79 YAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSD 138
                                 D  + QL+W+ +E++    +G DG+L++L++QI GGD S 
Sbjct:    97 MNVVLMKINQILMEKFLKLQDVCRTQLVWLVRELVKSGVIGADGVLMTLMKQIAGGDISS 156

Query:   139 GNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEID 198
              NLWL   ++ + + + + +L+   LV  S LYT+LRL+ DH    T S L  L+  E+D
Sbjct:   157 KNLWLAENVLDILVDQREWVLKSGMLVAMS-LYTYLRLIVDHG---TTSLLP-LRQREVD 211

Query:   199 FCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLYH 258
             FC+ +LRE+F  C  IGRDL+RLLQ++  +P    +W+DL+ +P    +P F+ I QL  
Sbjct:   212 FCIGLLRERFMECFIIGRDLVRLLQNVARIPEMELVWRDLLHSPQTL-SPQFTGILQLLT 270

Query:   259 LRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFI 318
              RTS ++   R+TP+MET+L F+ + V+ G QKRYQ WF +++L   E ++L  D+IR+I
Sbjct:   271 SRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTAESQSLRCDLIRYI 330

Query:   319 CCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIE 378
             C   HPSNE++ SDI+PRWA+IGWLL +C  N   +NAKLALFYDWLFF+   D+IMNIE
Sbjct:   331 CGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFNPEKDSIMNIE 390

Query:   379 PAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLD 438
             PA+L+M  S+  +  +T TLLDF+  ++ ++    +  + +GV ++   ++ K V+  L 
Sbjct:   391 PAILVMHHSMKPHPAITATLLDFMCRIIPHFFPPLEGQVRQGVFNSLNFIMEKRVLAHLA 450

Query:   439 VLVSCKTLSPYLKERLRK 456
              L     L   L+  LR+
Sbjct:   451 PLFDNPKLDRELRSMLRE 468

GO:0010212 "response to ionizing radiation" evidence=ISS

GO:0070876 "SOSS complex" evidence=ISS

GO:0000075 "cell cycle checkpoint" evidence=ISS

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

FB|FBgn0262117 IntS3 "Integrator 3" [Drosophila melanogaster (taxid:7227)]

 Score = 734 (263.4 bits), Expect = 2.7e-72, P = 2.7e-72
 Identities = 161/464 (34%), Positives = 253/464 (54%)

Query:    19 LSIRQAFDALESK-LRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTD 77
             ++++     L  K +    +  V   +++ +++   LY +L +P  A    + +  +  D
Sbjct:    36 VTLQMQISGLSDKEMHDMLSQAVCKEKQHEEISIGFLYIMLTDPSMASKTYRDVTLVSRD 95

Query:    78 GYAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFS 137
             G                    +  + QLIW+ +E +    +  + ++ + LRQ  GGD S
Sbjct:    96 GMNGIVTNLTFLVAEKYTKLTEVARRQLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVS 155

Query:   138 DGNLWLCFELVSLFLGKWDCLLEEEPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEI 197
               NL+L   L+ +F+ ++   LE  P ++ S +Y+F+RL+ DH     N  L  L+  E+
Sbjct:   156 SRNLFLIESLLDIFI-EFRTWLETNPFLVQSTVYSFVRLIEDHA----NPALLSLRQKEV 210

Query:   198 DFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLNPSEFKTPGFSDISQLY 257
              F + ++RE+F   + +GRD +RLLQ++  +P F  +W+D++ NP       F+ I QL 
Sbjct:   211 KFTISLIRERFHDIIPLGRDFVRLLQNVARIPEFEQLWRDILFNPKMLHQT-FNGIWQLL 269

Query:   258 HLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRF 317
             H+RTS R+   R+ PEME ++ FL + VK G+QKRYQ WF  K+   PE  +L  D+IRF
Sbjct:   270 HIRTSRRFLQCRLLPEMERKISFLASSVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRF 329

Query:   318 ICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNI 377
             I    HP+N+++ SDIIPRWA+IGWL+ SC       NAKL+LFYDWLFFD + DNIMNI
Sbjct:   330 IINVIHPTNDMLCSDIIPRWAIIGWLISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNI 389

Query:   378 EPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSL 437
             EP +L+M  SI  +  ++ TLLDFL  +  N+ V  +D I  GV ++   ++ K V+ +L
Sbjct:   390 EPGILVMYHSIRNHPFVSSTLLDFLCRITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNL 449

Query:   438 DVLVSCKTLSPYLKERLRKIQVLEVRVPNELH--LLHISQHSME 479
               L     L   L+  +R     E   P   H  LL  S H ++
Sbjct:   450 QPLFESPKLDRELRNLIRD-NFREFLSPPANHGQLLFTSLHPVQ 492


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      537       520   0.00089  119 3  11 22  0.46    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  321 KB (2164 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.89u 0.12s 45.01t   Elapsed:  00:00:03
  Total cpu time:  44.89u 0.12s 45.01t   Elapsed:  00:00:03
  Start:  Mon May 20 20:41:22 2013   End:  Mon May 20 20:41:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0032039 "integrator complex" evidence=ISS

GO:0016180 "snRNA processing" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I002019 hypothetical protein (995 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	537
pfam10189	230	pfam10189, DUF2356, Conserved protein (DUF2356)	1e-108

>gnl|CDD|192478 pfam10189, DUF2356, Conserved protein (DUF2356)

 Score =  323 bits (829), Expect = e-108
 Identities = 128/224 (57%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 233 AIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKR 292
            +W+DL+L P     P F  +SQL  +RTS R+   R++PEME +L F+L++VK G+QKR
Sbjct: 1   QLWRDLLLKPIVL-NPAFFGVSQLMRIRTSRRFLQCRLSPEMERKLLFMLSNVKFGNQKR 59

Query: 293 YQAWFAKKFLFGPERETLIVDIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHV 352
           YQ WF +K+L  PE E+L  DIIRFICC  HP+N+++ SDIIPRWA+IGWLL SCQ    
Sbjct: 60  YQDWFQRKYLRTPESESLRPDIIRFICCVIHPTNKVLCSDIIPRWAIIGWLLTSCQSGVA 119

Query: 353 ETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVD 412
           + NAKLALFYDWLFFD   DNIMNIEPA+L+MV SI +Y D+T+TLL+FL  LV+NYD  
Sbjct: 120 QANAKLALFYDWLFFDPKKDNIMNIEPAILVMVHSIKQYPDITNTLLEFLCRLVENYDPA 179

Query: 413 RKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRK 456
           R+D I RGV++AF  ++ KGVV SLD L+    L   L E LRK
Sbjct: 180 REDAIRRGVRNAFRFILEKGVVPSLDPLLENPKLDRELSELLRK 223

This is a 200 amino acid region of a family of proteins conserved from plants to humans. Some members have been putatively annotated as being integrator complex subunit 3 but this could not be confirmed. The function is unknown. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	537
PF10189	230	DUF2356: Conserved protein (DUF2356); InterPro: IP	100.0
KOG4262	496	consensus Uncharacterized conserved protein [Funct	100.0

>PF10189 DUF2356: Conserved protein (DUF2356); InterPro: IPR019333 The Integrator complex is involved in small nuclear RNA (snRNA) U1 and U2 transcription, and in their 3'-box-dependent processing

Probab=100.00  E-value=1.3e-99  Score=740.31  Aligned_cols=229  Identities=56%  Similarity=0.982  Sum_probs=226.3

Q ss_pred             HHHHHHhhCCCCCCCCCcccchhhhhccCCccchhccCChHHHHHHHHHHhhccCchhHHHHHHHHHhhcCCCCCccchh
Q 009322          233 AIWKDLVLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIV  312 (537)
Q Consensus       233 ~iWkDll~nP~~~~~~~f~~i~qll~~rTs~~~l~~RIspeME~kL~Fml~~Vk~Gn~kryq~WF~kkyL~tpesesL~~  312 (537)
                      +||||+++||+++ +|+|+||+|+|+++||+||+++|||||||+||.||+++||+|+|||||+||++|||+|||||+|||
T Consensus         1 ~lwrDll~np~~l-~p~f~gv~ql~~~~T~~~fl~~RispemE~kl~Fml~~Vk~G~~kryq~WF~~kyL~~pesesL~~   79 (230)
T PF10189_consen    1 QLWRDLLLNPSSL-SPTFTGVSQLMQIRTSRRFLQSRISPEMERKLRFMLSNVKFGNQKRYQDWFAKKYLSTPESESLRP   79 (230)
T ss_pred             CcHHHHhhCcccc-CCCccCHHHHHhCCCCchhhhhhCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHhcCCCCcchHHH
Confidence            4899999999999 589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCCCchhhhcccchhHHHHHHHHHhcCChHHHHHhHHHHHHhhhcccCCCCCccccchhHHHHHhhcCCCh
Q 009322          313 DIIRFICCGHHPSNEIIQSDIIPRWAVIGWLLKSCQKNHVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYI  392 (537)
Q Consensus       313 DlIRfIc~v~hP~Nevl~SdiiPRWavIgWLL~sc~~~~~~~~aKLALFyDWLffd~~~dniMnIEPaiLlm~~s~~~~p  392 (537)
                      |+||||||+|||+|||+||||+||||+||||+++|++++++||||||||||||||||++|||||||||||||+||+++||
T Consensus        80 DlIRfIc~~~hP~Nevl~S~i~pRwavIgwLl~~c~~~~~~~~~KLaLfyDWLffd~~~dniMnIEPaiLvm~~sl~~~p  159 (230)
T PF10189_consen   80 DLIRFICCVYHPTNEVLQSDIIPRWAVIGWLLTTCKSNVEQQNAKLALFYDWLFFDPRNDNIMNIEPAILVMRHSLKSHP  159 (230)
T ss_pred             HHHHHHHHhcCChhcccccchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCCCCCceeeecHHHHHHHHHcccCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhccCCchHHHHHHhHHHHHHHHHHcCCcccccccccCCCCCHHHHHHHHHhhcccc
Q 009322          393 DMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEV  462 (537)
Q Consensus       393 ~it~sLLeFL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k~Vv~sL~~l~~~pkLd~~L~~~lr~~f~~~~  462 (537)
                      +||+|||||||+++++|+|+++++||+||+|||++|+||||++||+||++|||||++|||++|++|+++.
T Consensus       160 ~it~sLLeFL~~~v~~~~p~~~~~I~~gV~~a~~~i~~k~vv~sl~~l~~~~~ld~~lre~lr~~F~~f~  229 (230)
T PF10189_consen  160 QITNSLLEFLCRIVENFDPPRRDRIRRGVRNAFRTIVEKGVVPSLSPLFDNPKLDPELRELLRETFPEFC  229 (230)
T ss_pred             HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHcCCcCChHHhcCCcccCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999874

This complex associates with the C-terminal domain of RNA polymerase II largest subunit and is recruited to the U1 and U2 snRNAs genes []. This entry represents subunit 3 of this complex. The function of this subunit is unknown.

>KOG4262 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.9e-50  Score=411.85  Aligned_cols=459  Identities=42%  Similarity=0.644  Sum_probs=431.2

Q ss_pred             cccccccCCCCCCChHHHHHHHHHHHHHhccCCCccccCCCchhhhHHHHHHHHHHhcCCCchHHHHHHHHHHhhccHHH
Q 009322            2 ASKLIGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYAL   81 (537)
Q Consensus         2 ~skL~~~~~~e~~delE~~le~~~~~l~~~l~~~~~~~v~~~~~~e~v~~gLLY~ILtep~~a~~~~r~L~~i~rDg~~~   81 (537)
                      +|++...+.+|+.+.+|-.+.+++.-+|+.+++.++.+++.+|+|-+.+.+..||+|.+|+..+...+.++.-..|||.+
T Consensus         7 ~s~~~~vs~~~~~~~~~~~~~~~~~~~~~f~~~qls~~~s~~qe~l~~~~~~~~~vl~e~~~ek~l~ks~~~ply~~frf   86 (496)
T KOG4262|consen    7 TSKLIRVSLHEVENQLELSLRQAFENLQPFLRPQLSLELSDPQEYLELNKAIVYGVLCEPNSEKTLIKSLHAPLYDGFRF   86 (496)
T ss_pred             hhHhHhhhHhhhhhHHHHHHhhccccccccccccceeecCCHHHHHHHhhhhhccccCCCcchhHHHHHhccHHHHHHHH
Confidence            57888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCCchhHHHHHHHHHhhhhhhhhcc
Q 009322           82 FVSLLVKVVKELYVKLFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEE  161 (537)
Q Consensus        82 vi~~L~~li~ekf~kL~d~~r~QLLwL~rElI~~~v~~iD~v~~~LLRqi~gGD~s~knv~L~e~lldil~~~~~~~l~~  161 (537)
                      +..++..++.++|.++.++.+.|++|.+.+|+-+.-.|+..+...+.|++.               ...+.+.|++.++.
T Consensus        87 l~~~~~d~~s~~~~~~llSe~~q~ip~igy~lly~~~~~~~l~~~~n~~~s---------------~~~~t~~~~~~~d~  151 (496)
T KOG4262|consen   87 LTSLLIDIVSELYVKLLLSEKIQLIPVIGYMLLYSSVGIEDLVVSLNRRIS---------------ISLFTEKWECLLDD  151 (496)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHccc
Confidence            999999999999999999999999999999999999999999999999984               45788899999999


Q ss_pred             CchhHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhHHHHHHHHhhC
Q 009322          162 EPLVLSSALYTFLRLLADHCRLLTNSKLDVLKCLEIDFCVKMLREQFQLCLKIGRDLIRLLQDLVHVPVFRAIWKDLVLN  241 (537)
Q Consensus       162 ~p~Ll~~~vytfLRLI~DH~~~~~~~~~~~Lrq~Ev~fc~~lir~rf~dC~~IGRDlVRlL~~v~~iPef~~iWkDll~n  241 (537)
                      .|..+.+++|.++|+++||.....--.+....+.+++||+.+-|.--+-.+.||||+||.|++..+.-+|..+|+|++.|
T Consensus       152 ~~~~l~scL~~dl~ll~~~~~~l~~~llp~iyref~~~~~~~~~ll~~~~~~Id~~~i~~l~~~~~~g~l~~f~~D~v~n  231 (496)
T KOG4262|consen  152 SPLVLTSCLYSDLRLLADHYRVLGVVLLPNIYREFIKFCVKMFRLLLHLSLKIDRDLILLLQDLSHVGELREFWNDLVSN  231 (496)
T ss_pred             cHHHHHHHHHHHHHHHHhhceEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhhhhhHhhHHHH
Confidence            99999999999999999998765555678899999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCcccchhhhhccCCccchhccCChHHHHHHHHHHhhccCchhHHHHHHHHHhhcCCCCCccchhhhhhhhhcc
Q 009322          242 PSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRFLLTHVKLGSQKRYQAWFAKKFLFGPERETLIVDIIRFICCG  321 (537)
Q Consensus       242 P~~~~~~~f~~i~qll~~rTs~~~l~~RIspeME~kL~Fml~~Vk~Gn~kryq~WF~kkyL~tpesesL~~DlIRfIc~v  321 (537)
                                -+.|.+.-.|+.+|..-||.|+||..|+|++..++.|.+++|++||.+++|..++-+..-.|+|||+||.
T Consensus       232 ----------~~~qsldweT~eQyclwqiv~Ah~vpLr~il~ilp~l~ak~Hpeals~~LLllkre~ep~~eiVR~vlsr  301 (496)
T KOG4262|consen  232 ----------HCSQSLDWETSEQYCLWQIVPAHEVPLRFILGILPLLSAKRHPEALSKKLLLLKREEEPLIEIVRFVLSR  301 (496)
T ss_pred             ----------HHHHHHhhhhhhhhHhhhhhhhcCCcHHHHhhhhhhcccccCHHHHHHHHHhcccccccHHHHHHHHHcC
Confidence                      4778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhhcccchhHHHHHHHHHhcCCh-HHHHHhHHHHHHhhhcccCCCCCccccchhHHHHHhhcCCChhHHHHHHH
Q 009322          322 HHPSNEIIQSDIIPRWAVIGWLLKSCQKN-HVETNAKLALFYDWLFFDESVDNIMNIEPAMLLMVCSIPRYIDMTHTLLD  400 (537)
Q Consensus       322 ~hP~Nevl~SdiiPRWavIgWLL~sc~~~-~~~~~aKLALFyDWLffd~~~dniMnIEPaiLlm~~s~~~~p~it~sLLe  400 (537)
                      +||+|+..-+.+++|||+  |++-.|+.. ...+..-.+|||||+|  +..+|+||.||+-+.|+.|.+++|+|++.|++
T Consensus       302 ~~p~kdd~fttsalR~~i--~~~ewCqk~~eilaevIksLL~~n~~--~s~pnkr~~~pk~~s~~~s~ptl~QIlehL~h  377 (496)
T KOG4262|consen  302 IHPTKDDIFTTSALRWAI--WLLEWCQKNHEILAEVIKSLLYDNLF--ESIPNKRNVEPKALSMVWSIPTLPQILEHLLH  377 (496)
T ss_pred             CCCCCCchhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCc--ccCCccccCCccccccccccccHHHHHHHHHH
Confidence            999999999999999999  999999998 6677888999999999  67799999999999999999999999999999


Q ss_pred             HHHHhhhccCCchHHHHHHhHHHHHHHHHHcCCcccccccccCCCCCHHHHHHHHHhhcccccc--ccccccccccCCCC
Q 009322          401 FLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVLVSCKTLSPYLKERLRKIQVLEVRV--PNELHLLHISQHSM  478 (537)
Q Consensus       401 FL~~~v~~f~P~~~~~Ir~gV~~af~~i~~k~Vv~sL~~l~~~pkLd~~L~~~lr~~f~~~~~~--~~~~~~~~~~~~~~  478 (537)
                      |....++.  -..++.+.+++.+||+.+-.+||..++....+++.|.++...++.+..++++..  +++.+.-++-+.+.
T Consensus       378 frl~lve~--tkqr~t~~~m~~sALQea~as~~~~~kk~F~dlfaLA~ey~~~~g~~~~s~q~~k~hss~~~vn~~~~~~  455 (496)
T KOG4262|consen  378 FRLHLVET--TKQRDTIVRMLTSALQEAEASGVIRSKKIFLDLFALAPEYKKKLGNLLSSHQEKKVHSSLNQVNVLSKQT  455 (496)
T ss_pred             HHHHHHhc--cccceeehHHHHHHHHHHHhhccHHHHHHHhhhhhhhHHHhhhhcCCcccccccccCCcHHhhhhccccc
Confidence            99999987  567788999999999999999999999999999999999999999999999866  55566666667777


Q ss_pred             CCCCCCCCCCCCc
Q 009322          479 ETFNLPSPTPCSE  491 (537)
Q Consensus       479 ~~~~~~~~~~~~~  491 (537)
                      -+++..+++-||.
T Consensus       456 ~~p~~a~~~~~S~  468 (496)
T KOG4262|consen  456 VLPSEANLKDCST  468 (496)
T ss_pred             cCccccccccccc
Confidence            8888888887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	537
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 80/558 (14%), Positives = 162/558 (29%), Gaps = 172/558 (30%)

Query: 6   IGTAPREAENPYELSIRQAFDALESKLRPPFALTVPNPQEYMQLNRA----------ILY 55
           I T  R+      + I Q  D L +  +      V   Q Y++L +A          ++ 
Sbjct: 98  IKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 56  G-------VL----CEPHFAKVHIKHLHAI--VTDGYALFVSLLVKVVKELYVKL----- 97
           G        +    C  +  KV  K    I  +          +++++++L  ++     
Sbjct: 157 GVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 98  ------------FDSVKNQL------------------IWVTKEMINVSAVGFDG---LL 124
                         S++ +L                  +    +  N     F+    +L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNA----FNLSCKIL 269

Query: 125 V-----SLLRQIVGG---DFSDGNLWLCF---ELVSLFLGKW-----DCLLEEE----PL 164
           +      +   +        S  +  +     E+ SL L K+       L  E     P 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPR 328

Query: 165 VLSSALYTFLRLLADHCRLLTNSKLDVLKCLE--IDFCVKML-----REQFQLCLKIGRD 217
            LS         + D      N K      L   I+  + +L     R+ F         
Sbjct: 329 RLS----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----- 379

Query: 218 LIRLLQDLVHVP--VFRAIWKDLVLNPSEFKTPGFSDISQL------YHLRTSSRYFLTR 269
              +     H+P  +   IW D++ +            S +        +   S Y   +
Sbjct: 380 ---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 270 ITPEMETQL-RFLLTHVKLGSQKRYQAW-FAKKFLFGPERETLIVDIIRFICCGHHPSN- 326
           +  E E  L R ++ H  +   K + +      +L               I  GHH  N 
Sbjct: 437 VKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQY--------FYSHI--GHHLKNI 484

Query: 327 EIIQS-DIIPRWAV-IGWL---LKSCQKNHVETNAKLALFYDWLFFDESV-DNIMNIEPA 380
           E  +   +     +   +L   ++        + + L       F+   + DN       
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN------- 537

Query: 381 MLLMVCSIPRYIDMTHTLLDFLFLLVDNYDVDRKDVIARGVKSAFATLVHKGVVQSLDVL 440
                   P+Y  + + +LDFL  + +N            + S +  L+   ++   +  
Sbjct: 538 -------DPKYERLVNAILDFLPKIEENL-----------ICSKYTDLLRIALMAEDE-- 577

Query: 441 VSCKTLSPYLKERLRKIQ 458
                     +E  +++Q
Sbjct: 578 -------AIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 51/336 (15%), Positives = 94/336 (27%), Gaps = 107/336 (31%)

Query: 223 QDLVHVPVFR-AIWKDL-VLNPSEFKTPGFSDISQLYHLRTSSRYFLTRITPEMETQLRF 280
           +D++   VF  A   +    +  +      S   ++ H+  S          +  +    
Sbjct: 19  KDIL--SVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMS---------KDAVSGTLR 66

Query: 281 LLTHVKLGSQKRYQAWFAK------KFLFGPERETLI---VDIIRFICCGH--HPSNEII 329
           L   +    ++  Q +  +      KFL  P +       +    +I      +  N++ 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 330 QSDIIPR----WAVIGWLL-----------------KS------CQKNHVETNAKLALFY 362
               + R      +   LL                 K+      C    V+      +F 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185

Query: 363 DWLFF--DESVDNIMNIEPAMLLMV-----------CSIPRYIDMTHTLLDFLF------ 403
            WL      S + ++ +   +L  +            +I   I      L  L       
Sbjct: 186 -WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 404 --LLV-DNYDVDRKDVIARGVKSAFA----TLV---HKGVVQSLDVLVSC--------KT 445
             LLV    +V           +AF      L+    K V   L    +          T
Sbjct: 245 NCLLVLL--NVQNAKAW-----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 446 LSP-YLKERLRKIQVLEVRV---PNE---LHLLHIS 474
           L+P  +K  L K   L+ R    P E    +   +S
Sbjct: 298 LTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLS 331

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00