Citrus Sinensis ID: 009424
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPS6 | 524 | Pentatricopeptide repeat- | yes | no | 0.970 | 0.990 | 0.610 | 0.0 | |
| O22714 | 491 | Pentatricopeptide repeat- | no | no | 0.732 | 0.798 | 0.349 | 6e-71 | |
| Q9SY07 | 532 | Pentatricopeptide repeat- | no | no | 0.807 | 0.812 | 0.329 | 1e-68 | |
| Q9SKU6 | 490 | Pentatricopeptide repeat- | no | no | 0.786 | 0.859 | 0.343 | 3e-68 | |
| Q84JR3 | 492 | Pentatricopeptide repeat- | no | no | 0.856 | 0.930 | 0.308 | 8e-66 | |
| Q93WC5 | 502 | Pentatricopeptide repeat- | no | no | 0.854 | 0.910 | 0.329 | 2e-65 | |
| Q9FZ24 | 537 | Pentatricopeptide repeat- | no | no | 0.766 | 0.763 | 0.334 | 1e-64 | |
| Q3E911 | 491 | Pentatricopeptide repeat- | no | no | 0.8 | 0.871 | 0.327 | 4e-62 | |
| Q94B59 | 409 | Pentatricopeptide repeat- | no | no | 0.557 | 0.728 | 0.312 | 1e-41 | |
| Q9C7F1 | 566 | Putative pentatricopeptid | no | no | 0.654 | 0.618 | 0.322 | 7e-41 |
| >sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/534 (61%), Positives = 420/534 (78%), Gaps = 15/534 (2%)
Query: 1 MILQPSLHNHH-KICLSQSRTQPLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHS 59
M+LQ ++ N + + S S ++ L C+ P ++ +K I CS+SQ++
Sbjct: 1 MLLQAAVQNRNVPLASSASYSRLLRCRSPVV--------SVAALSKKTAAIVCSISQVYG 52
Query: 60 YGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKF 119
YGTVD+ERRP+++WNAI++K+SLM+ P+LG+ASVLN WEK GR LTKWELCRVVKELRK+
Sbjct: 53 YGTVDYERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKY 112
Query: 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVY 179
+R ALEVYDWMNNRGERFRLSASDAAIQLDLI KV G+ AE+FFL LP+ KDRRVY
Sbjct: 113 KRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVY 172
Query: 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239
G+LLNAYVRA+ R AE L++ MRDKGYA+H LP+NVMMTLYM ++EYD+V++MV EMK+
Sbjct: 173 GSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQ 232
Query: 240 KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299
K IRLD+YSYNIWLSSCGS GS EKME V++ MK D ++ PNWTTFSTMATMYIKMG+ E
Sbjct: 233 KDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETE 292
Query: 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
KAE++LR+VE+RITGR+R+PYHYLLSLYGS+G K+E+YRVW++Y+SV P + NLGYHA++
Sbjct: 293 KAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALV 352
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
SSL R+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK + AE F+ ++E GGK
Sbjct: 353 SSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGK 412
Query: 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479
P+S++WE LA GH R+R I EAL+CL+ AF+AEG+ +WRPK + + FFK CEEESD+ S
Sbjct: 413 PSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTS 472
Query: 480 KEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDEDSD-EDSEMLLSQLQ 532
KEA + LLRQ G ++K Y++LI V EN N+ + D +++ LL+QLQ
Sbjct: 473 KEAVLELLRQSGDLEDKSYLALID-----VDENRTVNNSEIDAHETDALLTQLQ 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 223/398 (56%), Gaps = 6/398 (1%)
Query: 94 LNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLI 153
LN + KG + + KWE+ +K+LR Y AL++ + M RG + SD AI LDL+
Sbjct: 43 LNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERG--MNKTVSDQAIHLDLV 100
Query: 154 AKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP 213
AK + + E++F+ LP+T K YG+LLN Y + + AE L++KM++ S+
Sbjct: 101 AKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMS 160
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273
YN +MTLY K E ++V +M+ E+K + + D Y+YN+W+ + + +E V E M
Sbjct: 161 YNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMN 220
Query: 274 VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333
D V P+WTT+S MA++Y+ G +KAE++L+ +E + T RD Y +L++LYG +GK
Sbjct: 221 RDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKL 280
Query: 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393
EVYR+W R P +N+ Y MI L ++ D+ G E +F+EW + S+YD RI N++
Sbjct: 281 TEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVL 340
Query: 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA--- 450
+ Y +EG KA GGK N+ +WE + +++ + AL C+ A +
Sbjct: 341 IGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGK 400
Query: 451 AEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488
+G K W P P V E++ D+ E + +L+
Sbjct: 401 GDGGK-WLPSPETVRALMSYFEQKKDVNGAENLLEILK 437
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 263/458 (57%), Gaps = 26/458 (5%)
Query: 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152
+ W++ G S+ K+EL R+V+ELRK +RYKHALE+ +WM + E +L A D A+ LDL
Sbjct: 80 TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQ-EDIKLQAGDYAVHLDL 138
Query: 153 IAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSL 212
I+K+ G+ SAE FF +PD ++ +LL++YV+ ++ AE L +KM + G+ L
Sbjct: 139 ISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCL 198
Query: 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL--DVYSYNIWLSSCGSQGSTEKMEGVFE 270
PYN M+++Y+ ++++V ++ E+K IR D+ +YN+WL++ S E E V+
Sbjct: 199 PYNHMLSMYISRGQFEKVPVLIKELK---IRTSPDIVTYNLWLTAFASGNDVEGAEKVYL 255
Query: 271 LMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330
K +K +NP+W T+S + +Y K VEKA +L+ +E ++ ++RV Y L+SL+ ++
Sbjct: 256 KAKEEK-LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANL 314
Query: 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
G K+ V W +S F + + Y +MIS++ ++G+ E + +++EW SV + D RI
Sbjct: 315 GDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIP 374
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA 450
NL+++ Y+ E F+ I+E+G P+ ++WE L +++ + + + L C A
Sbjct: 375 NLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAI- 433
Query: 451 AEGAKSWRPKPVNVINFFKAC---EEESDMGSKEAFVALLRQPGYRKEKDYMSLIG---- 503
+ K W VNV AC EE+ ++ E + LL++ GY + Y SL+
Sbjct: 434 -DSVKKW---TVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAK 489
Query: 504 ------LTDEAVAENNKKNDEDSDEDSEMLLSQLQFAE 535
+ +E +A++N + DE++ E L SQ++ E
Sbjct: 490 AGEMALIVEERMAKDNVELDEETKELIR-LTSQMRVTE 526
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/425 (34%), Positives = 242/425 (56%), Gaps = 4/425 (0%)
Query: 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEV 128
P+ ++ + R+++ +P VL+ W G + EL ++K LRKF R+ HAL++
Sbjct: 33 PLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQI 92
Query: 129 YDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVR 188
DWM+ +S D AI+LDLIAKV G+ AE FF ++P ++ +YGALLN Y
Sbjct: 93 SDWMSEH-RVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYAS 151
Query: 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS 248
++ AE + +M++ G+ LPYNVM+ LY++ +Y VE ++ EM+++ ++ D+++
Sbjct: 152 KKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFT 211
Query: 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308
N L + E ME + D+ ++ +W T++ A YIK G EKA E LR+
Sbjct: 212 VNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKS 271
Query: 309 ESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD 367
E + + R Y L+S YG+ GKKEEVYR+W+LY+ + G N GY ++IS+L ++ D
Sbjct: 272 EQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKEL-DGFYNTGYISVISALLKMDD 330
Query: 368 IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWET 427
IE +EKI EEW + S +D RI +L+++ Y K+G +KAE N ++++ ++++WE
Sbjct: 331 IEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWER 390
Query: 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487
LA G+ ++ +A+ K A WRP V +++ E + DM + LL
Sbjct: 391 LALGYKMAGKMEKAVEKWKRAIEV-SKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLL 449
Query: 488 RQPGY 492
+ G+
Sbjct: 450 SERGH 454
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 252/467 (53%), Gaps = 9/467 (1%)
Query: 71 IKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYD 130
+K ++ K+S + +P+ L +W + G+ ++ EL R+V +LR+ +R+ HALEV
Sbjct: 22 VKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSK 81
Query: 131 WMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR 190
WMN G S ++ A+ LDLI +V+G +AE++F +L + K+ + YGALLN YVR +
Sbjct: 82 WMNETGVCV-FSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQ 140
Query: 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN 250
+ L +KM++ G+ SL YN +M LY I ++++V ++ EMKE+ + D YSY
Sbjct: 141 NVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYR 200
Query: 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310
I +++ G+ E++ G M+ + + +W T++ A YI G ++A E L+ E+
Sbjct: 201 ICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSEN 260
Query: 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370
R+ +D Y++L++LY +GKK EV R+W+L + V N Y ++ SL +I +
Sbjct: 261 RLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVE 320
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
E++ EW S + YD R+ N ++ Y+ + +KAEA + G SWE +A
Sbjct: 321 AEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVAT 380
Query: 431 GHIRERRILEALSCLKGAFAAE-GAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489
+ + + A C+K A E G++ WRP V + +E + E+FVA LR
Sbjct: 381 AYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRN 440
Query: 490 PGYRKEKDYMSLI-------GLTDEAVAENNKKNDEDSDEDSEMLLS 529
++ Y +L+ G + + + K + + DE++ ++LS
Sbjct: 441 CIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILS 487
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 260/467 (55%), Gaps = 10/467 (2%)
Query: 72 KWNAIFRKLSLMDNPQLGSAS-VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYD 130
K +I++KLS + G LN + G + K +L R K+LRKFR+ + ALE+++
Sbjct: 37 KHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFE 96
Query: 131 WMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR 190
WM + F + SD AI+L+LIAK G+ +AE +F SL D++K++ YG+LLN Y +
Sbjct: 97 WMERKEIAF--TGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEK 154
Query: 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN 250
A+ + M D + +SLP+N +M +YM + + ++V ++V MKEK I +Y+
Sbjct: 155 EEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYS 214
Query: 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310
+W+ SCGS + +E V + MK + +W TF+ +A +YIK+G KAEE+L+ +E+
Sbjct: 215 MWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLEN 274
Query: 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370
+ R YH+L++LY + EVYRVW+L + +P V N Y M+ +L+++ DI+G
Sbjct: 275 NMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDG 334
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
++K+F EW S +YD R+AN+ +S Y+K+ +++AEA FN +++ S + + L
Sbjct: 335 VKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMM 394
Query: 431 GHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP 490
++ + AL + A + K+W + +FF EE D+ E F L +
Sbjct: 395 HLLKNDQADLALKHFEAAVLDQD-KNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKW 453
Query: 491 GYRKEKDYMSLIGL---TDEAVAENNKKNDEDS---DEDSEMLLSQL 531
+ Y L+ +A + K+ +E DE+ E LLS++
Sbjct: 454 SPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKI 500
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 231/415 (55%), Gaps = 5/415 (1%)
Query: 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR 135
+++KLS++ A LN + G ++ K +L R K LRKFRR +HA E++DWM R
Sbjct: 73 LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKR 132
Query: 136 GERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRR-VYGALLNAYVRARMRGN 194
+ S SD AI LDLI K G+ +AE++F +L + K+ + YGAL+N Y
Sbjct: 133 --KMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEK 190
Query: 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254
A+ + M + + +SLP+N MM++YM++ + ++V +V MK++GI +Y+IW+
Sbjct: 191 AKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQ 250
Query: 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITG 314
SCGS + +E + + M D W TFS +A +Y K G EKA+ +L+ +E ++
Sbjct: 251 SCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNP 310
Query: 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374
+R +H+L+SLY + K EVYRVW + P V NL Y M+ +++++GD++G++KI
Sbjct: 311 NNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKI 370
Query: 375 FEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434
F EW S +YD R+AN+ ++ Y+K +++AE + +++ P S + + L +
Sbjct: 371 FTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLE 430
Query: 435 ERRILEALSCLKGAF--AAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487
+ A+ L+ A +AE W V FF E+ D+ E F +L
Sbjct: 431 NDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKIL 485
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 233/437 (53%), Gaps = 9/437 (2%)
Query: 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR 135
I RK + P+ S+L + G +++ EL + K L + RY AL++ +WM N+
Sbjct: 44 ILRK----NGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQ 99
Query: 136 GERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV----YGALLNAYVRARM 191
+ S D A++LDLI K HG+ E++F L + RV Y LL AYV+ +M
Sbjct: 100 KD-IEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKM 158
Query: 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI 251
AE L++K+ G+ V P+N MM LY +Y++V +VS MK I +V SYN+
Sbjct: 159 VKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNL 218
Query: 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR 311
W+++C +E V++ M DK+V W++ T+A +YIK G EKA L E
Sbjct: 219 WMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKM 278
Query: 312 ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371
+ +R+ Y +L++LY S+G KE V R+W + +SV ++ + Y ++SSL + GD+E
Sbjct: 279 LNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEA 338
Query: 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431
E++F EW + +YD R++N+++ YV+ G KAE+ ++E GG PN +WE L EG
Sbjct: 339 ERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEG 398
Query: 432 HIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPG 491
++ + +A+ + F WRP V+ + E+E + A+V L + G
Sbjct: 399 WVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLG 458
Query: 492 YRKEKDYMSLIGLTDEA 508
Y L+ + + A
Sbjct: 459 LASLPLYRLLLRMHEHA 475
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 167/301 (55%), Gaps = 3/301 (0%)
Query: 86 PQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASD 145
P+ + +VL W G +T EL + KELR+ RRYKHALEV +WM E ++S +D
Sbjct: 67 PKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQH-EESKISDAD 125
Query: 146 AAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKM-RD 204
A ++DLI+KV G+ +AE +F L K Y +LL+AY ++ AE L ++
Sbjct: 126 YASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIES 185
Query: 205 KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEK 264
++ YN MMTLYM + + ++V ++ +K+K + D+++YN+WLSSC + + ++
Sbjct: 186 DSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDE 245
Query: 265 MEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL-RRVESRITGRDRVPYHYL 323
+ + E M+ D + N W + + ++YI +V AE +L E I+ R+ + Y +L
Sbjct: 246 LRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFL 305
Query: 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383
+ L+ +G K + ++W R+ +++ Y ++SS +G + E+I +W K+
Sbjct: 306 MILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKT 365
Query: 384 S 384
+
Sbjct: 366 T 366
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 180/366 (49%), Gaps = 16/366 (4%)
Query: 49 VIKCSMSQIHSYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWE 108
VI SMS + +G+ P +A+ R N Q+ VL W + G +
Sbjct: 24 VITVSMSWLKIHGSC-----PHRITDALHR------NAQI--IPVLEQWRQQGNQVNPSH 70
Query: 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168
+ ++K+LR + AL+V +WM+ + + L D A +L LI V G+ AE FF S
Sbjct: 71 VRVIIKKLRDSDQSLQALQVSEWMS-KEKICNLIPEDFAARLHLIENVVGLEEAEKFFES 129
Query: 169 LPDTLKDRRVYGALLNAYVRA-RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227
+P + VY +LLN+Y R+ + AE KMRD G + +PYN MM+LY +K
Sbjct: 130 IPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNR 189
Query: 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFST 287
++VE ++ EMK+ + D + N L + +ME + + W T
Sbjct: 190 EKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLD 249
Query: 288 MATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV 346
MA Y++ KA + LR E + + + Y +L+ LYG G +EEV RVW LY+S
Sbjct: 250 MAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSK 309
Query: 347 FPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406
N GY +I SL ++ DI G E+I++ W S+ +D RI ++ S Y G +KA
Sbjct: 310 IGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKA 369
Query: 407 EAFFNS 412
E NS
Sbjct: 370 EKLMNS 375
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| 224063635 | 497 | predicted protein [Populus trichocarpa] | 0.925 | 0.995 | 0.714 | 0.0 | |
| 224137116 | 539 | predicted protein [Populus trichocarpa] | 0.981 | 0.974 | 0.666 | 0.0 | |
| 255571041 | 533 | pentatricopeptide repeat-containing prot | 0.979 | 0.983 | 0.659 | 0.0 | |
| 449432307 | 537 | PREDICTED: pentatricopeptide repeat-cont | 0.968 | 0.964 | 0.633 | 0.0 | |
| 297848282 | 523 | pentatricopeptide repeat-containing prot | 0.970 | 0.992 | 0.624 | 0.0 | |
| 22329290 | 524 | pentatricopeptide repeat-containing prot | 0.970 | 0.990 | 0.610 | 0.0 | |
| 20453085 | 524 | At1g02150/T7I23.8 [Arabidopsis thaliana] | 0.970 | 0.990 | 0.608 | 0.0 | |
| 225453344 | 527 | PREDICTED: pentatricopeptide repeat-cont | 0.897 | 0.910 | 0.657 | 0.0 | |
| 356503236 | 555 | PREDICTED: pentatricopeptide repeat-cont | 0.908 | 0.875 | 0.618 | 0.0 | |
| 356522970 | 546 | PREDICTED: pentatricopeptide repeat-cont | 0.936 | 0.917 | 0.609 | 0.0 |
| >gi|224063635|ref|XP_002301239.1| predicted protein [Populus trichocarpa] gi|222842965|gb|EEE80512.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/504 (71%), Positives = 417/504 (82%), Gaps = 9/504 (1%)
Query: 1 MILQPSLHNHHKICLSQ--SRTQPLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIH 58
M+LQPSLH HHK+ LS S + PLP K P FT LHQ K KLPVI CS+SQIH
Sbjct: 1 MLLQPSLH-HHKVSLSSTISYSHPLPWKNPN-FT-LHQTVNYK----KLPVITCSISQIH 53
Query: 59 SYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRK 118
+YGTVD+ERRPM+KWNAI+R++SLM+NP+LGS SVLN WE G+ LTKWELCRVVKELRK
Sbjct: 54 NYGTVDYERRPMMKWNAIYRRISLMENPELGSGSVLNQWENDGKRLTKWELCRVVKELRK 113
Query: 119 FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV 178
++RY+ ALEVYDWMNNR ERF LS SDAAIQLDLIAKV GV+SAEDFFL LP+T KDRR+
Sbjct: 114 YKRYQQALEVYDWMNNRQERFGLSPSDAAIQLDLIAKVRGVSSAEDFFLRLPNTFKDRRI 173
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
YGALLNAYVR RMR AE LID+MR K Y H+LPYNVMMTLYM I EYD+V+ ++SEM
Sbjct: 174 YGALLNAYVRNRMREKAESLIDEMRGKDYVTHALPYNVMMTLYMNINEYDKVDLIISEMN 233
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
EK I+LD+YSYNIWLSSCG QGS +KME VFE MK D ++NPNWTTFSTMATMYIKMG+
Sbjct: 234 EKNIKLDIYSYNIWLSSCGLQGSADKMEQVFEQMKSDGSINPNWTTFSTMATMYIKMGKF 293
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358
EKAE+ LRRVESRITGRDR+PYHYLLSLYG+VG KEEVYRVWN+Y+S+FP + NLGYHAM
Sbjct: 294 EKAEDCLRRVESRITGRDRIPYHYLLSLYGNVGNKEEVYRVWNIYKSIFPSIPNLGYHAM 353
Query: 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418
ISSL R+ DIEG EKI+EEWLS+K+SYDPRIANL M+ +V +GN DKAE+FF+ ++EEGG
Sbjct: 354 ISSLVRMDDIEGAEKIYEEWLSIKTSYDPRIANLFMAAFVYQGNLDKAESFFDHMLEEGG 413
Query: 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMG 478
KPNS SWE LA+GHI ERR EALSCLK AFA G+KSW+P P NV +FFK CEEE DM
Sbjct: 414 KPNSHSWEILAQGHISERRTSEALSCLKEAFATPGSKSWKPNPANVSSFFKLCEEEVDMA 473
Query: 479 SKEAFVALLRQPGYRKEKDYMSLI 502
SKEA + LRQ G+ K+K Y L+
Sbjct: 474 SKEALASFLRQSGHLKDKAYALLL 497
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137116|ref|XP_002327026.1| predicted protein [Populus trichocarpa] gi|222835341|gb|EEE73776.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/543 (66%), Positives = 440/543 (81%), Gaps = 18/543 (3%)
Query: 1 MILQPSLHNHHKICLSQSRTQP--LPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIH 58
M+LQP+LH HHK+ LS S + +P K P+ + LHQ + H+ KLPVI CS+SQ+H
Sbjct: 1 MLLQPALH-HHKVSLSSSISYSHSVPWKSPK--STLHQ--TVNHK--KLPVIICSISQVH 53
Query: 59 SYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRK 118
+YGTVD+ERRPMIKWN I+R++SLM+NP+LGS SVLN WE G+ LTKWELCRVVKELRK
Sbjct: 54 NYGTVDYERRPMIKWNGIYRRISLMENPELGSGSVLNRWENEGKRLTKWELCRVVKELRK 113
Query: 119 FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV 178
++RY+ ALEVYDWM NR ERFRLS SDAAIQLDLIAKV GV++AEDFFLSLP+T KDRRV
Sbjct: 114 YKRYQQALEVYDWMKNRQERFRLSPSDAAIQLDLIAKVRGVSTAEDFFLSLPNTFKDRRV 173
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
YGALLNAYV+ RMR AE L D+MRDKGY H+LP+NV MTLYM IKEYD+V+ M+SEM
Sbjct: 174 YGALLNAYVQNRMREKAETLFDEMRDKGYVTHALPFNVTMTLYMNIKEYDKVDLMISEMN 233
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
EK I+LD+YSYNIWLSSCGSQGS +KME V+E MK D+++NPNWTTFSTMATMYIKMGQ
Sbjct: 234 EKNIKLDIYSYNIWLSSCGSQGSADKMEQVYEQMKSDRSINPNWTTFSTMATMYIKMGQF 293
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358
EKAE+ LRRVESRITGRDR+PYHYLLSLYG+VG KEEVYRVWN+Y+S+FP + NLGYHA+
Sbjct: 294 EKAEDCLRRVESRITGRDRIPYHYLLSLYGNVGNKEEVYRVWNIYKSIFPSIPNLGYHAI 353
Query: 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418
ISSL R+ DIEG EKI+EEWLS+K+SYDPRIANL ++ YV +GN D+A++FF+ ++E+GG
Sbjct: 354 ISSLVRLDDIEGAEKIYEEWLSIKTSYDPRIANLFIAAYVYQGNLDEAKSFFDHMLEDGG 413
Query: 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMG 478
KPNS +WE LA+GHI ERR EALSCLK AF G+KSW+P P NV +FFK CEEE+DM
Sbjct: 414 KPNSNTWEILAQGHISERRTSEALSCLKEAFVTPGSKSWKPNPANVTSFFKLCEEEADMA 473
Query: 479 SKEAFVALLRQPGYRKEKDYMSLIGLT---DEAVAENNKKNDE------DSDEDSEMLLS 529
+KEA LRQ G+ K+K Y SL+G+ DE + + D+ D D+ +EML+S
Sbjct: 474 NKEALEGFLRQSGHLKDKAYASLLGMPVTGDELSTKEDGTGDQIDNEEDDEDDGAEMLVS 533
Query: 530 QLQ 532
LQ
Sbjct: 534 HLQ 536
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571041|ref|XP_002526471.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534146|gb|EEF35862.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/537 (65%), Positives = 435/537 (81%), Gaps = 13/537 (2%)
Query: 1 MILQPSLHNHHKICLSQ--SRTQPLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIH 58
M+LQPSL NH + LS S ++PLP K P +T LHQ + KLP I CS+S++H
Sbjct: 2 MLLQPSL-NHQQASLSSTISYSRPLPWKNPH-YT-LHQTVNYR----KLP-ITCSISKVH 53
Query: 59 SYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRK 118
SYGTVD+ERRPMIKWN+++R++SLM+ P+LG+A+VLN+ EK G+ LTKWELCRVVKELRK
Sbjct: 54 SYGTVDYERRPMIKWNSVYRRISLMEKPELGAATVLNEMEKDGKKLTKWELCRVVKELRK 113
Query: 119 FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV 178
++R+K ALEVYDWMNNR ERFRLSASDAAIQLDL+AKV GV+SAED+F+ L D +KDRRV
Sbjct: 114 YKRHKQALEVYDWMNNREERFRLSASDAAIQLDLVAKVRGVSSAEDYFMRLSDNVKDRRV 173
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
YGALLN+YV+ARMR AE LI+KMR K Y H+LP+NVMMTLYM +KEYD+V+ M+SEM
Sbjct: 174 YGALLNSYVKARMREKAESLIEKMRKKDYTTHALPFNVMMTLYMNLKEYDKVDMMISEMM 233
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
K IRLD+YSYNIWLSS GSQGS E+ME V+E MK+D +NPNWTTFSTMATMYIKMGQ+
Sbjct: 234 AKNIRLDIYSYNIWLSSRGSQGSIERMEEVYEQMKLDSTINPNWTTFSTMATMYIKMGQL 293
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358
EKAE+ LRRVESRITGRDR+PYHYLLSLYG+VG KEE+YRVWN+Y+S+F + NLGYHA+
Sbjct: 294 EKAEDCLRRVESRITGRDRIPYHYLLSLYGNVGNKEEIYRVWNIYKSIFATIPNLGYHAI 353
Query: 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418
ISSL R+ DIEG EKI+EEWL VKSSYDPRI NL+M WYV+ GN DKAE+FF+ ++E GG
Sbjct: 354 ISSLVRMDDIEGAEKIYEEWLPVKSSYDPRIGNLLMGWYVRGGNLDKAESFFDHMMEVGG 413
Query: 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMG 478
KPNS++WE LA+GH RE+RI EALSC K AF A+G+KSW+PKPV + +FFK CEEE+DM
Sbjct: 414 KPNSSTWEILADGHTREKRISEALSCFKEAFLAQGSKSWKPKPVIISSFFKLCEEEADMA 473
Query: 479 SKEAFVALLRQPGYRKEKDYMSLIGL---TDEAVAENNKKNDEDSDEDSEMLLSQLQ 532
S LL Q GY ++K Y SLIG ++E E ++ D + E++E L+QLQ
Sbjct: 474 STGVLEDLLAQSGYLEDKTYASLIGSSVPSNELSTEKDRTGDRNEVEENETFLNQLQ 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432307|ref|XP_004133941.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150-like [Cucumis sativus] gi|449525818|ref|XP_004169913.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/529 (63%), Positives = 423/529 (79%), Gaps = 11/529 (2%)
Query: 1 MILQPSLHNHHKICLSQSRTQPLPCKIPRCFTRLHQQSAIKHQ--RQKLPV-IKCSMSQI 57
M+LQ S+H H + L P P R F L Q H ++LP+ + CS+SQ+
Sbjct: 1 MLLQTSVH-HRTVSL------PSPISYSRKFLPLIQSQPFFHNVNYRRLPLSVTCSISQV 53
Query: 58 HSYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELR 117
HSYGTVDFERRPM KWNAI+R++SLM+NP+LGSASVLN WE G+++TKWEL RVVKELR
Sbjct: 54 HSYGTVDFERRPMFKWNAIYRRISLMENPELGSASVLNQWENEGKNITKWELSRVVKELR 113
Query: 118 KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRR 177
K++R++ ALE+YDWM+NR ERFRL+ SDAAIQLDLI+KV G+ SAE++FL LP+ LKDRR
Sbjct: 114 KYKRFERALEIYDWMSNREERFRLTTSDAAIQLDLISKVRGIKSAEEYFLRLPNHLKDRR 173
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
+YGALLNAY + R R AE L++KMR KG+ H LP+NVMMTLYM +KEY++VES+VSEM
Sbjct: 174 IYGALLNAYAKGRQREKAENLLEKMRTKGFTTHPLPFNVMMTLYMNVKEYEKVESLVSEM 233
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
E I+LD+YSYNIWLSSCG QGSTEKME V+E MK D+ +N NWTTFSTMATMYIKMG
Sbjct: 234 TENSIQLDIYSYNIWLSSCGLQGSTEKMEEVYEQMKQDRTINANWTTFSTMATMYIKMGL 293
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA 357
+EKAEE LRRVESRI GRDR+PYHYL+SLYGSVG KEE+YRVWN+Y++VFP + NLGYHA
Sbjct: 294 MEKAEECLRRVESRIVGRDRIPYHYLISLYGSVGNKEEMYRVWNIYKNVFPTIPNLGYHA 353
Query: 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417
+IS+L R+GD+EG EKI+EEWL+VKS+YDPRIANL + WYVKEGN KAE+FF+ ++E G
Sbjct: 354 IISALIRVGDVEGAEKIYEEWLTVKSTYDPRIANLFIGWYVKEGNTSKAESFFDHMVEVG 413
Query: 418 GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM 477
GKPNS++WE L + H +E R+ +AL+ K AF+AEG+KSWRPKP NV+ +F CE+E D+
Sbjct: 414 GKPNSSTWEILVDRHTKEGRVSDALASWKEAFSAEGSKSWRPKPYNVLAYFDLCEKEGDI 473
Query: 478 GSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDEDSDEDSEM 526
SKE V LLRQP Y ++K Y SLIGL DE + +NN+ +++ S+ + E+
Sbjct: 474 ASKEVLVGLLRQPKYLQDKTYASLIGLLDETI-DNNEVSEKGSNINDEI 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848282|ref|XP_002892022.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337864|gb|EFH68281.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/533 (62%), Positives = 424/533 (79%), Gaps = 14/533 (2%)
Query: 1 MILQPSLHNHHKICLSQSRTQPLP-CKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHS 59
M+L ++ N + S + LP C+ P L +++A I CS+SQ++
Sbjct: 1 MLLPAAVQNSNVPLASSASYSRLPRCRSPVLSVALSKKTA---------AIVCSISQVYG 51
Query: 60 YGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKF 119
YGTVD+ERRP+++WNAI++K+SLM+ P+LG+ASVLN WEKGGR LTKWELCRVVKELRK+
Sbjct: 52 YGTVDYERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKGGRKLTKWELCRVVKELRKY 111
Query: 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVY 179
+R ALEVYDWMNNRGERFRLSASDAAIQLDLI KV G++ AE FFL+LP+ KDRRVY
Sbjct: 112 KRPNQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGISDAEQFFLTLPENFKDRRVY 171
Query: 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239
G+LLNAYVRA+ R AE L+ MRDKGYA+H LP+NVMMTLYM ++EYD+V++MV EMK+
Sbjct: 172 GSLLNAYVRAKSREKAEALLHTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQ 231
Query: 240 KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299
K IRLD+YSYNIWLSSCGS GS EKME V++ MK D ++NPNWTTFSTMATMYIKMG+ E
Sbjct: 232 KDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSINPNWTTFSTMATMYIKMGETE 291
Query: 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
KAE++LR+VE+RITGR+R+PYHYLLSLYGSVG K+E+YRVWN+Y+SV P + NLGYHA++
Sbjct: 292 KAEDALRKVEARITGRNRIPYHYLLSLYGSVGNKKELYRVWNVYKSVVPSIPNLGYHALV 351
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
SSLAR+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK +KAE F+ ++E GGK
Sbjct: 352 SSLARMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNVYVKNDQLEKAEGLFDHMVEMGGK 411
Query: 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479
P+S++WE LA+GH R+R I EAL+CL+ AF+AEG+ +WRPK + + FFK CEEESD+ S
Sbjct: 412 PSSSTWEILADGHTRKRCIPEALTCLRKAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTS 471
Query: 480 KEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQ 532
KEA + LLRQ G+ ++K Y +LI + DE ENN + D +++ LL+QLQ
Sbjct: 472 KEAVLELLRQSGHLEDKAYQALIDV-DENRTENNSEIDA---HETDALLTQLQ 520
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329290|ref|NP_171717.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806400|sp|Q8LPS6.2|PPR3_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g02150 gi|2317908|gb|AAC24372.1| Unknown protein [Arabidopsis thaliana] gi|332189272|gb|AEE27393.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/534 (61%), Positives = 420/534 (78%), Gaps = 15/534 (2%)
Query: 1 MILQPSLHNHH-KICLSQSRTQPLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHS 59
M+LQ ++ N + + S S ++ L C+ P ++ +K I CS+SQ++
Sbjct: 1 MLLQAAVQNRNVPLASSASYSRLLRCRSPVV--------SVAALSKKTAAIVCSISQVYG 52
Query: 60 YGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKF 119
YGTVD+ERRP+++WNAI++K+SLM+ P+LG+ASVLN WEK GR LTKWELCRVVKELRK+
Sbjct: 53 YGTVDYERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKY 112
Query: 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVY 179
+R ALEVYDWMNNRGERFRLSASDAAIQLDLI KV G+ AE+FFL LP+ KDRRVY
Sbjct: 113 KRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVY 172
Query: 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239
G+LLNAYVRA+ R AE L++ MRDKGYA+H LP+NVMMTLYM ++EYD+V++MV EMK+
Sbjct: 173 GSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQ 232
Query: 240 KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299
K IRLD+YSYNIWLSSCGS GS EKME V++ MK D ++ PNWTTFSTMATMYIKMG+ E
Sbjct: 233 KDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETE 292
Query: 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
KAE++LR+VE+RITGR+R+PYHYLLSLYGS+G K+E+YRVW++Y+SV P + NLGYHA++
Sbjct: 293 KAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALV 352
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
SSL R+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK + AE F+ ++E GGK
Sbjct: 353 SSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGK 412
Query: 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479
P+S++WE LA GH R+R I EAL+CL+ AF+AEG+ +WRPK + + FFK CEEESD+ S
Sbjct: 413 PSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTS 472
Query: 480 KEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDEDSD-EDSEMLLSQLQ 532
KEA + LLRQ G ++K Y++LI V EN N+ + D +++ LL+QLQ
Sbjct: 473 KEAVLELLRQSGDLEDKSYLALID-----VDENRTVNNSEIDAHETDALLTQLQ 521
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20453085|gb|AAM19786.1| At1g02150/T7I23.8 [Arabidopsis thaliana] gi|29028736|gb|AAO64747.1| At1g02150/T7I23.8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/534 (60%), Positives = 420/534 (78%), Gaps = 15/534 (2%)
Query: 1 MILQPSLHNHH-KICLSQSRTQPLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHS 59
M+LQ ++ N + + S S ++ L C+ P ++ +K I CS+SQ++
Sbjct: 1 MLLQAAVQNRNVPLASSASYSRLLRCRSPVV--------SVAALSKKTAAIVCSISQVYG 52
Query: 60 YGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKF 119
YGTVD+ERRP+++WNAI++K+SLM+ P+LG+ASVLN WEK GR LTKWELCRVVKELRK+
Sbjct: 53 YGTVDYERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKY 112
Query: 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVY 179
+R A+EVYDWMNNRGERFRLSASDAAIQLDLI KV G+ AE+FFL LP+ KDRRVY
Sbjct: 113 KRANQAIEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVY 172
Query: 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239
G+LLNAYVRA+ R AE L++ MRDKGYA+H LP+NVMMTLYM ++EYD+V++MV EMK+
Sbjct: 173 GSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQ 232
Query: 240 KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299
K IRLD+YSYNIWLSSCGS GS EKME V++ MK D ++ PNWTTFSTMATMYIKMG+ E
Sbjct: 233 KDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETE 292
Query: 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
KAE++LR+VE+RITGR+R+PYHYLLSLYGS+G K+E+YRVW++Y+SV P + NLGYHA++
Sbjct: 293 KAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALV 352
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
SSL R+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK + AE F+ ++E GGK
Sbjct: 353 SSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGK 412
Query: 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479
P+S++WE LA GH R+R I EAL+CL+ AF+AEG+ +WRPK + + FFK CEEESD+ S
Sbjct: 413 PSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTS 472
Query: 480 KEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDEDSD-EDSEMLLSQLQ 532
KEA + LLRQ G ++K Y++LI V EN N+ + D +++ LL+QLQ
Sbjct: 473 KEAVLELLRQSGDLEDKSYLALID-----VDENRTVNNSEIDAHETDALLTQLQ 521
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453344|ref|XP_002270492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/494 (65%), Positives = 399/494 (80%), Gaps = 14/494 (2%)
Query: 50 IKCSMSQIHSYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWEL 109
I CS+SQIHSYGTVD+ERRP++KWNA++R++SLM+NP++GSASVLN WE G+ LTKWEL
Sbjct: 34 ITCSISQIHSYGTVDYERRPLVKWNAVYRRISLMENPEMGSASVLNQWENEGKRLTKWEL 93
Query: 110 CRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSL 169
CRVVKELRKF+R+K ALEVY+WMNNRGERFRLS+SDAAIQLDLIAKV GV+SAED+F L
Sbjct: 94 CRVVKELRKFKRFKMALEVYEWMNNRGERFRLSSSDAAIQLDLIAKVCGVSSAEDYFSRL 153
Query: 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229
PDTLKD+R+YGALLNAYV+A+MR AE+LI+K+R+KGYA LP+NVMMTLYM +KE D+
Sbjct: 154 PDTLKDKRIYGALLNAYVQAKMRDKAEILIEKLRNKGYATTPLPFNVMMTLYMNLKELDK 213
Query: 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289
V+SM+SEM K I+LD+YSYNIWLSSC S TE+ME VFE MK+++ +NPNWTTFSTMA
Sbjct: 214 VQSMISEMMNKNIQLDIYSYNIWLSSCES---TERMEQVFEQMKLERTINPNWTTFSTMA 270
Query: 290 TMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349
TMYIK+GQ EKAEE L++VESRIT RDR+PYHYL+SLYGS G K EVYR WN+Y+S FP
Sbjct: 271 TMYIKLGQFEKAEECLKKVESRITNRDRMPYHYLISLYGSTGNKAEVYRAWNIYKSKFPN 330
Query: 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAF 409
+ NLGYHA+ISSL R+GD+EG EKI+EEWLSVKSSYDPRI NL++ YVKEG +KAE F
Sbjct: 331 IPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPRIGNLLLGCYVKEGFLEKAEGF 390
Query: 410 FNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFK 469
+ +IE GGKPNST+WE LAEG+ ++I +ALSC K A AEG+ W+PKPVNV F
Sbjct: 391 LDHMIEAGGKPNSTTWEILAEGNTGVKKISDALSCFKRAVLAEGSNGWKPKPVNVSAFLD 450
Query: 470 ACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDED---------- 519
CEEE+D +KEA + LLRQ G +++ Y SL GL +V N N++D
Sbjct: 451 LCEEEADTATKEALMGLLRQMGCLEDEPYASLFGLHTGSVTGNELSNEKDRTGADKDIDE 510
Query: 520 -SDEDSEMLLSQLQ 532
D+ +EMLL+Q Q
Sbjct: 511 DEDDGAEMLLNQFQ 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503236|ref|XP_003520417.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/500 (61%), Positives = 384/500 (76%), Gaps = 14/500 (2%)
Query: 46 KLPVIKCSMSQIHSYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLT 105
+L V+ CS+S IHSYGTVD+ERRP+++WN ++R++SL NPQ+GSA VLN WE GR LT
Sbjct: 52 RLSVVTCSISNIHSYGTVDYERRPIVRWNDVYRRISLNQNPQVGSAEVLNQWENEGRHLT 111
Query: 106 KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDF 165
KWEL RVVKELRK++R+ ALEVYDWMNNR ERFR+S SDAAIQLDLIAKV GV+SAE F
Sbjct: 112 KWELSRVVKELRKYKRFPRALEVYDWMNNRPERFRVSESDAAIQLDLIAKVRGVSSAEAF 171
Query: 166 FLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK 225
FLSL D LKD+R YGALLN YV +R + AE L D MR KGY +H+LP NVMMTLYM +
Sbjct: 172 FLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLFDTMRSKGYVIHALPINVMMTLYMNLN 231
Query: 226 EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTF 285
EY +V+ + SEM EK I+LD+Y+YNIWLSSCGSQGS EKME VFE M+ D + PNW+TF
Sbjct: 232 EYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFEQMERDPTIVPNWSTF 291
Query: 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345
ST+A+MYI+M Q EKAE+ LR+VE RI GRDR+P+HYLLSLYGSVGKK+EVYRVWN Y+S
Sbjct: 292 STLASMYIRMNQNEKAEKCLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVYRVWNTYKS 351
Query: 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
+FP + NLGYHA+ISSL ++ DIEG EK++EEW+SVKSSYDPRI NL+M WYVK+ + DK
Sbjct: 352 IFPRIPNLGYHAIISSLVKLDDIEGAEKLYEEWISVKSSYDPRIGNLLMGWYVKKDDTDK 411
Query: 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF-AAEGAKSWRPKPVNV 464
A +FF I +G PNS +WE L+EGHI ++RI EALSCLK AF A G+KSWRPKP +
Sbjct: 412 ALSFFEQISNDGCIPNSNTWEILSEGHIADKRISEALSCLKEAFMVAGGSKSWRPKPSYL 471
Query: 465 INFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAE------------- 511
F + C+E++DM S E + LLRQ + K K Y S+IG D +
Sbjct: 472 SAFLELCQEQNDMESAEVLIGLLRQSKFSKIKVYASIIGSPDCTIDNGELQSKIDITDRT 531
Query: 512 NNKKNDEDSDEDSEMLLSQL 531
++ + E+ D+DS+MLL+QL
Sbjct: 532 DDAVDSENMDDDSQMLLNQL 551
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522970|ref|XP_003530115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/505 (60%), Positives = 386/505 (76%), Gaps = 4/505 (0%)
Query: 31 FTRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVDFERRPMIKWNAIFRKLSLMDNPQLGS 90
T H QS + + V CS+S+IHSYGTVD+ERRP++ WN ++R++SL NPQ+GS
Sbjct: 38 ITHGHTQSLCFYHPRLSVVTTCSISKIHSYGTVDYERRPIVGWNDVYRRISLNPNPQVGS 97
Query: 91 ASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQL 150
A VLN WE GR LTKWEL RVVKELRK++R++ ALEVYDWMNNR ERFR+S SDAAIQL
Sbjct: 98 AEVLNQWENEGRHLTKWELSRVVKELRKYKRFRRALEVYDWMNNRPERFRVSESDAAIQL 157
Query: 151 DLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH 210
DLIAKV G++SAE FFLSL D LKD++ YGALLN YV +R + AE L D MR KGY +H
Sbjct: 158 DLIAKVRGLSSAEAFFLSLEDKLKDKKTYGALLNVYVHSRSKEKAESLFDTMRSKGYVIH 217
Query: 211 SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFE 270
+LP+NVMMTLYM + EY +V+ + SEM EK I+LD+Y+YNIWLSSCGSQGS EKME VFE
Sbjct: 218 ALPFNVMMTLYMNLNEYAKVDILASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFE 277
Query: 271 LMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330
M+ D ++ PNW+TFSTMA+MYI+M Q EKAEE LR+VE RI GRDR+P+HYLLSLYGSV
Sbjct: 278 QMEKDPSIIPNWSTFSTMASMYIRMDQNEKAEECLRKVEGRIKGRDRIPFHYLLSLYGSV 337
Query: 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
GKK+EV RVWN Y+S+FP + NLGYHA+ISSL ++ DIE EK++EEW+SVKSSYDPRI
Sbjct: 338 GKKDEVCRVWNTYKSIFPSIPNLGYHAIISSLVKLDDIEVAEKLYEEWISVKSSYDPRIG 397
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF- 449
NL++ WYVK+G+ DKA +FF ++ +G PNS +WE L+EGHI ++RI EA+SCLK AF
Sbjct: 398 NLLIGWYVKKGDTDKALSFFEQMLNDGCIPNSNTWEILSEGHIADKRISEAMSCLKEAFM 457
Query: 450 AAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAV 509
AA G+KSWRPKP + F + C+E+ DM S E + LLRQ + K K Y SLIG +DE
Sbjct: 458 AAGGSKSWRPKPSYLSAFLELCQEQDDMESAEVLIGLLRQSKFNKSKVYASLIGSSDELP 517
Query: 510 AENNKKNDEDSDEDSEM---LLSQL 531
+ +D+ + M LL+QL
Sbjct: 518 KIDTADRTDDAVDSENMDNDLLNQL 542
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| TAIR|locus:2204793 | 524 | AT1G02150 [Arabidopsis thalian | 0.932 | 0.952 | 0.627 | 4.6e-176 | |
| TAIR|locus:2036586 | 491 | AT1G60770 [Arabidopsis thalian | 0.807 | 0.879 | 0.329 | 9.2e-68 | |
| TAIR|locus:2051379 | 490 | AT2G20710 [Arabidopsis thalian | 0.786 | 0.859 | 0.343 | 5.1e-67 | |
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.783 | 0.787 | 0.331 | 1.7e-66 | |
| TAIR|locus:504955535 | 492 | AT4G21705 "AT4G21705" [Arabido | 0.803 | 0.873 | 0.322 | 2.6e-63 | |
| TAIR|locus:2204808 | 537 | AT1G02370 "AT1G02370" [Arabido | 0.764 | 0.761 | 0.341 | 6.9e-63 | |
| TAIR|locus:2141360 | 502 | AT4G01990 [Arabidopsis thalian | 0.771 | 0.822 | 0.342 | 6.9e-63 | |
| TAIR|locus:2146390 | 491 | AT5G27460 "AT5G27460" [Arabido | 0.792 | 0.863 | 0.326 | 5.5e-61 | |
| TAIR|locus:2184807 | 409 | AT5G09450 "AT5G09450" [Arabido | 0.585 | 0.765 | 0.314 | 2.2e-43 | |
| TAIR|locus:2010459 | 566 | AT1G28020 "AT1G28020" [Arabido | 0.596 | 0.563 | 0.332 | 1.2e-42 |
| TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1710 (607.0 bits), Expect = 4.6e-176, P = 4.6e-176
Identities = 318/507 (62%), Positives = 410/507 (80%)
Query: 1 MILQPSLHNHHKICLSQSRTQPLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHSY 60
M+LQ ++ N + + L+ S + ++ RC + + +A+ +K I CS+SQ++ Y
Sbjct: 1 MLLQAAVQNRN-VPLASSASYS---RLLRCRSPVVSVAALS---KKTAAIVCSISQVYGY 53
Query: 61 GTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFR 120
GTVD+ERRP+++WNAI++K+SLM+ P+LG+ASVLN WEK GR LTKWELCRVVKELRK++
Sbjct: 54 GTVDYERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYK 113
Query: 121 RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYG 180
R ALEVYDWMNNRGERFRLSASDAAIQLDLI KV G+ AE+FFL LP+ KDRRVYG
Sbjct: 114 RANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYG 173
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
+LLNAYVRA+ R AE L++ MRDKGYA+H LP+NVMMTLYM ++EYD+V++MV EMK+K
Sbjct: 174 SLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQK 233
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300
IRLD+YSYNIWLSSCGS GS EKME V++ MK D ++ PNWTTFSTMATMYIKMG+ EK
Sbjct: 234 DIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEK 293
Query: 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360
AE++LR+VE+RITGR+R+PYHYLLSLYGS+G K+E+YRVW++Y+SV P + NLGYHA++S
Sbjct: 294 AEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVS 353
Query: 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420
SL R+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK + AE F+ ++E GGKP
Sbjct: 354 SLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKP 413
Query: 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSK 480
+S++WE LA GH R+R I EAL+CL+ AF+AEG+ +WRPK + + FFK CEEESD+ SK
Sbjct: 414 SSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSK 473
Query: 481 EAFVALLRQPGYRKEKDYMSLIGLTDE 507
EA + LLRQ G ++K Y++LI + DE
Sbjct: 474 EAVLELLRQSGDLEDKSYLALIDV-DE 499
|
|
| TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 145/440 (32%), Positives = 238/440 (54%)
Query: 54 MSQIHSYGTVDFERRPMIKW--NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCR 111
M+ H + D +R K+ ++ +L ++ LN + KG + + KWE+
Sbjct: 1 MAMRHLSRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGD 60
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD 171
+K+LR Y AL++ + M RG + SD AI LDL+AK + + E++F+ LP+
Sbjct: 61 TIKKLRNRGLYYPALKLSEVMEERG--MNKTVSDQAIHLDLVAKAREITAGENYFVDLPE 118
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
T K YG+LLN Y + + AE L++KM++ S+ YN +MTLY K E ++V
Sbjct: 119 TSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVP 178
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
+M+ E+K + + D Y+YN+W+ + + +E V E M D V P+WTT+S MA++
Sbjct: 179 AMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASI 238
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351
Y+ G +KAE++L+ +E + T RD Y +L++LYG +GK EVYR+W R P +
Sbjct: 239 YVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTS 298
Query: 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411
N+ Y MI L ++ D+ G E +F+EW + S+YD RI N+++ Y +EG KA
Sbjct: 299 NVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKE 358
Query: 412 SIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA---AEGAKSWRPKPVNVINFF 468
GGK N+ +WE + +++ + AL C+ A + +G K W P P V
Sbjct: 359 KAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGK-WLPSPETVRALM 417
Query: 469 KACEEESDMGSKEAFVALLR 488
E++ D+ E + +L+
Sbjct: 418 SYFEQKKDVNGAENLLEILK 437
|
|
| TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 146/425 (34%), Positives = 242/425 (56%)
Query: 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEV 128
P+ ++ + R+++ +P VL+ W G + EL ++K LRKF R+ HAL++
Sbjct: 33 PLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQI 92
Query: 129 YDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVR 188
DWM+ +S D AI+LDLIAKV G+ AE FF ++P ++ +YGALLN Y
Sbjct: 93 SDWMSEHRVH-EISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYAS 151
Query: 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS 248
++ AE + +M++ G+ LPYNVM+ LY++ +Y VE ++ EM+++ ++ D+++
Sbjct: 152 KKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFT 211
Query: 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308
N L + E ME + D+ ++ +W T++ A YIK G EKA E LR+
Sbjct: 212 VNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKS 271
Query: 309 ESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD 367
E + + R Y L+S YG+ GKKEEVYR+W+LY+ + G N GY ++IS+L ++ D
Sbjct: 272 EQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKEL-DGFYNTGYISVISALLKMDD 330
Query: 368 IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWET 427
IE +EKI EEW + S +D RI +L+++ Y K+G +KAE N ++++ ++++WE
Sbjct: 331 IEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWER 390
Query: 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487
LA G+ ++ +A+ K A WRP V +++ E + DM + LL
Sbjct: 391 LALGYKMAGKMEKAVEKWKRAIEVS-KPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLL 449
Query: 488 RQPGY 492
+ G+
Sbjct: 450 SERGH 454
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| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 141/425 (33%), Positives = 247/425 (58%)
Query: 78 RKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGE 137
R LSL+ + + + W++ G S+ K+EL R+V+ELRK +RYKHALE+ +WM + E
Sbjct: 66 RLLSLVYTKR-SAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQ-E 123
Query: 138 RFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAEL 197
+L A D A+ LDLI+K+ G+ SAE FF +PD ++ +LL++YV+ ++ AE
Sbjct: 124 DIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEA 183
Query: 198 LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257
L +KM + G+ LPYN M+++Y+ ++++V ++ E+K + D+ +YN+WL++
Sbjct: 184 LFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFA 242
Query: 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR 317
S E E V+ K +K +NP+W T+S + +Y K VEKA +L+ +E ++ ++R
Sbjct: 243 SGNDVEGAEKVYLKAKEEK-LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNR 301
Query: 318 VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377
V Y L+SL+ ++G K+ V W +S F + + Y +MIS++ ++G+ E + +++E
Sbjct: 302 VAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDE 361
Query: 378 WLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437
W SV + D RI NL+++ Y+ E F+ I+E+G P+ ++WE L +++ +
Sbjct: 362 WESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKD 421
Query: 438 ILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKD 497
+ + L C G A + K W V K EE+ ++ E + LL++ GY +
Sbjct: 422 MEKVLDCF-GK-AIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQL 479
Query: 498 YMSLI 502
Y SL+
Sbjct: 480 YNSLL 484
|
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| TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 140/434 (32%), Positives = 238/434 (54%)
Query: 71 IKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYD 130
+K ++ K+S + +P+ L +W + G+ ++ EL R+V +LR+ +R+ HALEV
Sbjct: 22 VKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSK 81
Query: 131 WMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR 190
WMN G S ++ A+ LDLI +V+G +AE++F +L + K+ + YGALLN YVR +
Sbjct: 82 WMNETGVCV-FSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQ 140
Query: 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN 250
+ L +KM++ G+ SL YN +M LY I ++++V ++ EMKE+ + D YSY
Sbjct: 141 NVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYR 200
Query: 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310
I +++ G+ E++ G M+ + + +W T++ A YI G ++A E L+ E+
Sbjct: 201 ICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSEN 260
Query: 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370
R+ +D Y++L++LY +GKK EV R+W+L + V N Y ++ SL +I +
Sbjct: 261 RLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVE 320
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
E++ EW S + YD R+ N ++ Y+ + +KAEA + G SWE +A
Sbjct: 321 AEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVAT 380
Query: 431 GHIRERRILEALSCLKGAFAAE-GAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489
+ + + A C+K A E G++ WRP V + +E + E+FVA LR
Sbjct: 381 AYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRN 440
Query: 490 P-GYRKEKDYMSLI 502
G K+ Y +L+
Sbjct: 441 CIGVNKQM-YHALV 453
|
|
| TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 142/416 (34%), Positives = 233/416 (56%)
Query: 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR 135
+++KLS++ A LN + G ++ K +L R K LRKFRR +HA E++DWM R
Sbjct: 73 LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKR 132
Query: 136 GERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRR-VYGALLNAYVRARMRGN 194
F S SD AI LDLI K G+ +AE++F +L + K+ + YGAL+N Y
Sbjct: 133 KMTF--SVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEK 190
Query: 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254
A+ + M + + +SLP+N MM++YM++ + ++V +V MK++GI +Y+IW+
Sbjct: 191 AKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQ 250
Query: 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITG 314
SCGS + +E + + M D W TFS +A +Y K G EKA+ +L+ +E ++
Sbjct: 251 SCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNP 310
Query: 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374
+R +H+L+SLY + K EVYRVW + P V NL Y M+ +++++GD++G++KI
Sbjct: 311 NNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKI 370
Query: 375 FEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434
F EW S +YD R+AN+ ++ Y+K +++AE + +++ P S + + L H+
Sbjct: 371 FTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMI-HLL 429
Query: 435 ERRILE-ALSCLKGAFA--AEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487
E + A+ L+ A + AE W V FF E+ D+ E F +L
Sbjct: 430 ENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKIL 485
|
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| TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 143/417 (34%), Positives = 239/417 (57%)
Query: 72 KWNAIFRKLSLMDNPQLGSAS-VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYD 130
K +I++KLS + G LN + G + K +L R K+LRKFR+ + ALE+++
Sbjct: 37 KHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFE 96
Query: 131 WMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR 190
WM + F + SD AI+L+LIAK G+ +AE +F SL D++K++ YG+LLN Y +
Sbjct: 97 WMERKEIAF--TGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEK 154
Query: 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN 250
A+ + M D + +SLP+N +M +YM + + ++V ++V MKEK I +Y+
Sbjct: 155 EEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYS 214
Query: 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310
+W+ SCGS + +E V + MK + +W TF+ +A +YIK+G KAEE+L+ +E+
Sbjct: 215 MWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLEN 274
Query: 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370
+ R YH+L++LY + EVYRVW+L + +P V N Y M+ +L+++ DI+G
Sbjct: 275 NMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDG 334
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
++K+F EW S +YD R+AN+ +S Y+K+ +++AEA FN +++ S + + L
Sbjct: 335 VKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMM 394
Query: 431 GHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487
++ + AL + A + K+W + +FF EE D+ E F L
Sbjct: 395 HLLKNDQADLALKHFEAAVLDQD-KNWTWSSELISSFFLHFEEAKDVDGAEEFCKTL 450
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| TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 140/429 (32%), Positives = 230/429 (53%)
Query: 84 DNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSA 143
+ P+ S+L + G +++ EL + K L + RY AL++ +WM N+ + S
Sbjct: 48 NGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKD-IEFSV 106
Query: 144 SDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV----YGALLNAYVRARMRGNAELLI 199
D A++LDLI K HG+ E++F L + RV Y LL AYV+ +M AE L+
Sbjct: 107 YDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALM 166
Query: 200 DKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ 259
+K+ G+ V P+N MM LY +Y++V +VS MK I +V SYN+W+++C
Sbjct: 167 EKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEV 226
Query: 260 GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVP 319
+E V++ M DK+V W++ T+A +YIK G EKA L E + +R+
Sbjct: 227 SGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLG 286
Query: 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379
Y +L++LY S+G KE V R+W + +SV ++ + Y ++SSL + GD+E E++F EW
Sbjct: 287 YFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWE 346
Query: 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439
+ +YD R++N+++ YV+ G KAE+ ++E GG PN +WE L EG ++ +
Sbjct: 347 AQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENME 406
Query: 440 EALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYM 499
+A+ + F WRP V+ + E+E + A+V L + G Y
Sbjct: 407 KAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYR 466
Query: 500 SLIGLTDEA 508
L+ + + A
Sbjct: 467 LLLRMHEHA 475
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| TAIR|locus:2184807 AT5G09450 "AT5G09450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 101/321 (31%), Positives = 178/321 (55%)
Query: 66 ERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHA 125
E + +K + IFR L L P+ + +VL W G +T EL + KELR+ RRYKHA
Sbjct: 52 EEKDDLK-SRIFR-LRL---PKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHA 106
Query: 126 LEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNA 185
LEV +WM E ++S +D A ++DLI+KV G+ +AE +F L K Y +LL+A
Sbjct: 107 LEVTEWMVQH-EESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHA 165
Query: 186 YVRARMRGNAELLIDKMRDK-GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL 244
Y ++ AE L ++ + ++ YN MMTLYM + + ++V ++ +K+K +
Sbjct: 166 YAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSP 225
Query: 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304
D+++YN+WLSSC + + +++ + E M+ D + N W + + ++YI +V AE +
Sbjct: 226 DIFTYNLWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAEST 285
Query: 305 LR-RVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363
L E I+ R+ + Y +L+ L+ +G K + ++W R+ +++ Y ++SS
Sbjct: 286 LPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYL 345
Query: 364 RIGDIEGMEKIFEEWLSVKSS 384
+G + E+I +W K++
Sbjct: 346 MLGHLREAEEIIHQWKESKTT 366
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| TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 107/322 (33%), Positives = 162/322 (50%)
Query: 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152
VL W + G + + ++K+LR + AL+V +WM+ + L D A +L L
Sbjct: 55 VLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKE-KICNLIPEDFAARLHL 113
Query: 153 IAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRA-RMRGNAELLIDKMRDKGYAVHS 211
I V G+ AE FF S+P + VY +LLN+Y R+ + AE KMRD G +
Sbjct: 114 IENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRP 173
Query: 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271
+PYN MM+LY +K ++VE ++ EMK+ + D + N L + +ME
Sbjct: 174 VPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNK 233
Query: 272 MKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSV 330
+ + W T MA Y++ KA + LR E + + + Y +L+ LYG
Sbjct: 234 WEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEA 293
Query: 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
G +EEV RVW LY+S N GY +I SL ++ DI G E+I++ W S+ +D RI
Sbjct: 294 GNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIP 353
Query: 391 NLMMSWYVKEGNFDKAEAFFNS 412
++ S Y G +KAE NS
Sbjct: 354 TMLASGYRDRGMTEKAEKLMNS 375
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LPS6 | PPR3_ARATH | No assigned EC number | 0.6104 | 0.9700 | 0.9904 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.II.1459.1 | hypothetical protein (497 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 535 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256
YN ++ Y K + +E + +EMK++GI+ +VY+Y+I +
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 44/290 (15%)
Query: 155 KVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPY 214
+V A + L + R+ A+L+ +VR +A + KM ++ +
Sbjct: 107 RVCSRALSSHPSLGV-------RLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSW 155
Query: 215 NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGV------ 268
NV++ Y K +DE + M G+R DVY++ L +CG + V
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215
Query: 269 --FELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSL 326
FE + VD VN + TMY+K G V A R V R+ RD + ++ ++S
Sbjct: 216 FGFE-LDVD-VVN-------ALITMYVKCGDVVSA----RLVFDRMPRRDCISWNAMISG 262
Query: 327 YGSVGKKEEVYRVWNLYR--SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384
Y G+ E ++ R SV P + + ++IS+ +GD ++ VK+
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHG--YVVKTG 318
Query: 385 YDPRIA--NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432
+ ++ N ++ Y+ G++ +AE F+ + ++ SW + G+
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 7e-05
Identities = 51/243 (20%), Positives = 115/243 (47%), Gaps = 15/243 (6%)
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273
+N++M++ ++ D ++ ++E G++ D Y +S+C G + M VF M
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM- 498
Query: 274 VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333
V+ V N TF + + GQV KA + + S+ DRV ++ L+S G G
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 334 EEVYRVWNLYRS----VFPGVTNLGYHAMISSLARIGDIEGMEKIFE--EWLSVKSSYDP 387
+ + V ++ + P ++ A++ + A G ++ +++++ ++K + P
Sbjct: 559 DRAFDVLAEMKAETHPIDP--DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT--P 614
Query: 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL--AEGHIRERRILEALSCL 445
+ + ++ ++G++D A + ++ + ++G KP+ + L GH + +A L
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--AGDLDKAFEIL 672
Query: 446 KGA 448
+ A
Sbjct: 673 QDA 675
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432
N ++ Y K+G ++A FN + + G KPN ++ L +G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246
YN ++ K +E + EMKE+GI DV
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM 288
DV +YN + +G E+ +F MK + + PN T+S +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS 422
N ++ K G ++A F + E G +P+
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGI 242
YN +++ Y K + +E + EMKEKG+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.94 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.92 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.92 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.91 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.88 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.88 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.85 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.73 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.69 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.66 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.38 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.35 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.3 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.3 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.22 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.04 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.97 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.93 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.84 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.84 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.81 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.38 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.36 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.31 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.3 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.3 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.26 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.25 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.21 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.19 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.15 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.12 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.1 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.96 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.95 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.9 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.7 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.69 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.67 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.66 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.6 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.58 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.51 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.48 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.38 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.31 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.85 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.84 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.74 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.53 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.23 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.14 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.05 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.99 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.86 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.69 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.64 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.63 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.6 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.22 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.79 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.78 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.7 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.56 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.36 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.24 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.86 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.55 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.47 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.44 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.11 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.07 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.72 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 91.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.49 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.35 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.29 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.58 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.49 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.41 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.25 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.04 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.85 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.25 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.15 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.92 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.65 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.31 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.85 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.54 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.73 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.41 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.26 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.22 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.2 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.39 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.15 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.09 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.18 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.03 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.99 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.37 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 82.16 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.39 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.31 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.18 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.69 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.65 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.4 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 80.12 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.06 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=603.86 Aligned_cols=472 Identities=17% Similarity=0.206 Sum_probs=421.8
Q ss_pred CCCCCCcc---ccccchhhhhhhhccCccceeeccccccccccc--------cccccccchHHHHHHHhccCCCCccHHH
Q 009424 24 PCKIPRCF---TRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVD--------FERRPMIKWNAIFRKLSLMDNPQLGSAS 92 (535)
Q Consensus 24 ~c~~~~~~---~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~n~li~~~~~~g~~~~~a~~ 92 (535)
.|...+.+ .++|+++++.+...+..+.+.++++|+++|++. ++.||+++||++|++|++.|+++ +|+.
T Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~-~A~~ 173 (857)
T PLN03077 95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD-EALC 173 (857)
T ss_pred HHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHH-HHHH
Confidence 35444433 489999999999888899999999999999987 44599999999999999999999 9999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC
Q 009424 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT 172 (535)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 172 (535)
+|++|.+.|+.||.+||++++++|++.++++.+.++|..+.+.| +.++..+++++|.+|+++|++++|+++|++|+.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 250 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG--FELDVDVVNALITMYVKCGDVVSARLVFDRMPR- 250 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC--CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009424 173 LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIW 252 (535)
Q Consensus 173 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~l 252 (535)
||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++|
T Consensus 251 -~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 251 -RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred -CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK 332 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (535)
|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 999999999999999999996 468889999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHh--------------------------------
Q 009424 333 KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS-------------------------------- 380 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------------------- 380 (535)
+++|.++++.|.+.|..++..+|++++++|++.|++++|.++|++|.+
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 888888877777777777767777777777777666666666665532
Q ss_pred ---------------------------------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 009424 381 ---------------------------------VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWET 427 (535)
Q Consensus 381 ---------------------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 427 (535)
.|+.+|..++++||++|+++|++++|.++|+.+ .||..+|++
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~ 559 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNI 559 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHH
Confidence 233333334445556666666666666666665 579999999
Q ss_pred HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh-cCCCCChh-hHHHHHHHh
Q 009424 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR-QPGYRKEK-DYMSLIGLT 505 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~~~~~~-~~~~L~~~y 505 (535)
||.+|+++|+.++|+++|++|. +.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+. +|++|+++|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~----~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMV----ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999999999999999 78999998 999999999
Q ss_pred Hhhhhcccc
Q 009424 506 DEAVAENNK 514 (535)
Q Consensus 506 ~~~~~~~~~ 514 (535)
+++|+.+++
T Consensus 636 ~r~G~~~eA 644 (857)
T PLN03077 636 GRAGKLTEA 644 (857)
T ss_pred HhCCCHHHH
Confidence 999999883
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-71 Score=590.11 Aligned_cols=476 Identities=12% Similarity=0.106 Sum_probs=425.5
Q ss_pred CCCCCCCCCCcc---ccccchhhhhhhhccCccceeeccccccccccc--------cccccccchHHHHHHHhccCCCCc
Q 009424 20 TQPLPCKIPRCF---TRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVD--------FERRPMIKWNAIFRKLSLMDNPQL 88 (535)
Q Consensus 20 ~~~~~c~~~~~~---~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~n~li~~~~~~g~~~~ 88 (535)
+++..|.....+ +++|+++++.|...+.++.+.+|.+|+++|++. +++||+++||+||++|++.|+++
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~- 270 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL- 270 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHH-
Confidence 344456555444 599999999999999999999999999999987 45589999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
+|+++|++|.+.|+.||..||+.++++|++.|+++.|.++|..+.+.| +.++..+++.++.+|+++|++++|+++|++
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 009424 169 LPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
|.. ||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+
T Consensus 349 m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 349 MET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred CCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
|++||++|++.|++++|.++|+.|. .+|..+||++|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|+
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 9999999999999999999999997 35778888888888888888888888888874 47777777776666555
Q ss_pred hcCCHHHHHHHHHHHHhhCC------------------------------CCchhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFP------------------------------GVTNLGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~------------------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
+.|.++.+.+++..+.+.|. .+|..+|+++|.+|++.|+.++|.++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555444444444333 456778888888888899999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCC
Q 009424 379 LSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII-EEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSW 457 (535)
Q Consensus 379 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~ 457 (535)
.+.|+.||..+|+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|++++.+|++.|++++|.+++++|. +
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-------~ 653 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-------I 653 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-------C
Confidence 988999999999999999999999999999999998 57889999999999999999999999999988886 6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 458 RPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 458 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+||..+|.+++.+|...|+.+.++.+.+++.+..+.....|..|.++|+..|+|++
T Consensus 654 ~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 654 TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 89999999999999999999999999989888888777789999999999999998
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=552.77 Aligned_cols=427 Identities=15% Similarity=0.216 Sum_probs=413.6
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGR-SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDA 146 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (535)
+|...|..++..+++.|+.. +|+++|++|.+.|+ .++..++..++.+|.+.|.+++|..++..|.. ++..+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Ty 440 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTF 440 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHH
Confidence 67888999999999999999 99999999999985 56888889999999999999999999988853 789999
Q ss_pred HHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 147 AIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
+.++.+|++.|+++.|.++|++|.+. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999876 7899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD-KAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+. .++.||..+|++||.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999753 5789999999999999999999999999
Q ss_pred HHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 304 SLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|+++|++|...|..||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
.||..+|+++|.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|. ..|+.||..|
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~----~~Gi~Pd~~T 756 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK----RLGLCPNTIT 756 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh-hHHHHHHHh
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKEK-DYMSLIGLT 505 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~L~~~y 505 (535)
|..++.+|.+.|++++|.+++++|.+.|+.|+. +|++|+.++
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=556.30 Aligned_cols=448 Identities=13% Similarity=0.155 Sum_probs=386.9
Q ss_pred ceeeccccccccccc--------cccccccch-----HHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009424 50 IKCSMSQIHSYGTVD--------FERRPMIKW-----NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKEL 116 (535)
Q Consensus 50 ~~~~~~~~~~~~~~~--------~~~~~~~~~-----n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (535)
...++..+.++|++. +.+++++.| +.++.+|.+.|... +|+.+|+.|.. ||..||+.++++|
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~-eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK-EAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHH-HHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 344444555567765 333555544 45666788888888 89999988854 8999999999999
Q ss_pred HHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhH
Q 009424 117 RKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGN 194 (535)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 194 (535)
++.|+++.|.++|+.|.+.| +.++..+++.+|.+|+++|++++|.++|++|.+. .||.++||+||.+|++.|++++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAG--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999998 8889999999999999999999999999998865 5899999999999999999999
Q ss_pred HHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHh
Q 009424 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE--KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELM 272 (535)
Q Consensus 195 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~ 272 (535)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 578899999999999999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 009424 273 KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN 352 (535)
Q Consensus 273 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 352 (535)
.+ .++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..|+.
T Consensus 606 ~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 86 58889999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999889999999999999999
Q ss_pred HccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh----c-------------------CChhhHHHHHHHHhc
Q 009424 433 IRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE----E-------------------SDMGSKEAFVALLRQ 489 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~ 489 (535)
++.|++++|.++|.+|. +.|+.||..+|+.++..|.+ . +..+.|..+|++|++
T Consensus 765 ~k~G~le~A~~l~~~M~----k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAK----EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHCCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999998 88999999999988876542 1 123678889999999
Q ss_pred CCCCChh-hHHHHHHHhHhhh
Q 009424 490 PGYRKEK-DYMSLIGLTDEAV 509 (535)
Q Consensus 490 ~~~~~~~-~~~~L~~~y~~~~ 509 (535)
.|+.|+. +|+.++..+.+.+
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccc
Confidence 9999888 8888887664443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-66 Score=538.91 Aligned_cols=427 Identities=17% Similarity=0.220 Sum_probs=324.5
Q ss_pred ccccccchHHHHHHHhccCCCCccHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh
Q 009424 66 ERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGG-RSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 66 ~~~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
.+++.++||++|.+|.+.|++. +|+++|+.|...+ ..||..||+.++++|++.++++.|.++|..|.+.| +.++..
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~-~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g--~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHR-EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG--FEPDQY 159 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCcchH
Confidence 3467889999999999999999 9999999998864 78999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHH--------
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNV-------- 216 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------- 216 (535)
+++.++++|+++|++++|+++|++|++ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 999999999999999999999999998 9999999999999999999999999999988877776665554
Q ss_pred ---------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 009424 217 ---------------------------MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 217 ---------------------------li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~ 269 (535)
||++|++.|++++|.++|++|. ++|.++||++|.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555555555555553 235555555555555555555555555
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (535)
++|.+ .|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .
T Consensus 314 ~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 314 YEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 55553 355566666666666666666666666666666555656666666666666666666666666666653 2
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHhHHHHH
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE-EGGKPNSTSWETL 428 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l 428 (535)
+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 455666666666666666666666666666666666766677777777666777777777766654 4666666667777
Q ss_pred HHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 429 AEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+.+|++.|++++|.+++++|. +.||..+|++++.+|...|+++.|+++++++.+.++....+|..|+++|++.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~-------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAP-------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 777777777777766665543 6788888888888888888888888888888877776666899999999999
Q ss_pred hhccc
Q 009424 509 VAENN 513 (535)
Q Consensus 509 ~~~~~ 513 (535)
|+|++
T Consensus 542 G~~~~ 546 (697)
T PLN03081 542 GRQAE 546 (697)
T ss_pred CCHHH
Confidence 99887
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-65 Score=531.19 Aligned_cols=460 Identities=13% Similarity=0.174 Sum_probs=418.3
Q ss_pred CCCCCCCCCCcc---ccccchhhhhhhhccCccceeeccccccccccc--------cccccccchHHHHHHHhccCCCCc
Q 009424 20 TQPLPCKIPRCF---TRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVD--------FERRPMIKWNAIFRKLSLMDNPQL 88 (535)
Q Consensus 20 ~~~~~c~~~~~~---~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~n~li~~~~~~g~~~~ 88 (535)
.++..|...+.+ .++|..+.+.|+.++....+.++.+|+++|.++ ++.||+++||++|++|++.|+++
T Consensus 128 ~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~- 206 (697)
T PLN03081 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYR- 206 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHH-
Confidence 344445555444 599999999999999999999999999999987 44589999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
+|+++|++|.+.|+.||..||..++++|++.|..+.+.++|..+.+.| +.++..++++++++|+++|++++|.++|++
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 009424 169 LPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
|+. +|+++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 285 m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 285 MPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred CCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 998 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
|++|+++|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||.+||++++.+|+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999997 47999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHh-hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 329 SVGKKEEVYRVWNLYRS-VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
+.|++++|.++|+.|.+ .+..|+..+|++++++|++.|++++|.+++++| +..|+..+|++|+.+|+..|+++.|.
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999986 589999999999999999999999999998865 67899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHH-------HHHHhc----C
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFF-------KACEEE----S 475 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll-------~a~~~~----g 475 (535)
.+++++.+.++. +..+|..|+..|++.|++++|.++++.|. +.|+++.+ .+|..+- .....+ .
T Consensus 515 ~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~----~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 515 LAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLK----RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHH----HcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 999999764332 57899999999999999999999999999 78876432 2332211 000001 1
Q ss_pred ChhhHHHHHHHHhcCCCCChhh
Q 009424 476 DMGSKEAFVALLRQPGYRKEKD 497 (535)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~ 497 (535)
-++...++..+|.+.|..|+..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc
Confidence 2456677888899999988763
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-26 Score=252.61 Aligned_cols=425 Identities=9% Similarity=0.021 Sum_probs=327.3
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
+...|+.+...|...|+++ +|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 538 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLA-KAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID---PKNLRAILA 538 (899)
T ss_pred CcHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHH
Confidence 4556777777777777777 7777777776632 2234455566677777777888888887777664 445667777
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
+...|.+.|+.++|...|+++... +.+...+..+...|.+.|++++|..+++++.+.. +.+..+|..+...+.+.|++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 777777888888888888776554 3456677778888888888888888888877643 45667788888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
++|...|+.+.+.. +.+...+..+..++.+.|++++|..+++.+.+. .+.+..++..++..+...|++++|.++++.
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888887764 345667777888888888888888888888753 255677888888888888888888888888
Q ss_pred HHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH
Q 009424 308 VESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP 387 (535)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 387 (535)
+.+..+ .+...+..+...+...|++++|+..|+.+....+.. .++..+..++.+.|+.++|.+.++.+.+..+. +.
T Consensus 695 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~ 770 (899)
T TIGR02917 695 LQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DA 770 (899)
T ss_pred HHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 876543 456677778888888889999999998888765444 56677888888899999999988888876544 77
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
.++..+...|.+.|+.++|...|+++.+..+. +...++.+...+...|+ ++|+++++++.+ ..| +..++..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~------~~~~~~~~~~~ 842 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALK------LAPNIPAILDT 842 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHh------hCCCCcHHHHH
Confidence 88888889999999999999999998886543 78888888899999888 889999999882 334 3456667
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccc
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~ 514 (535)
+..++...|++++|.++++++++.++....++..+...|.+.|+.+++
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 777888999999999999999999887666888899999887766553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-25 Score=245.85 Aligned_cols=425 Identities=9% Similarity=0.007 Sum_probs=217.0
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
+...|+.+...+.+.|+++ +|..+|+++.+. .| +...+..+...+...|++++|.+.++.+.+.. +.......
T Consensus 362 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 435 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFE-KAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLD---PELGRADL 435 (899)
T ss_pred CHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC---CcchhhHH
Confidence 3445666666666666666 666666666553 22 33344455555555566666666666555543 11223333
Q ss_pred HHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC
Q 009424 148 IQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 226 (535)
.++..|.+.|++++|..+++.+... +.+..+|+.+...|.+.|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC
Confidence 4445555555555555555555443 2344556666666666666666666666555432 2233444555555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
+++|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|..+++++.+.. +.+...+..++..|.+.|++++|..+++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555543 2244455555555555555555555555554321 3344445555555555555555555555
Q ss_pred HHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 307 RVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
.+.+.. +.+...|..+..+|...|++++|+..|+.+....+. +...+..+...+...|++++|...++.+.+..+. +
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPD-N 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 554322 233445555555555555555555555555543222 2234445555555555555555555555543322 3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVIN 466 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ 466 (535)
...+..+...+...|++++|.++++.+.+.+.. +...+..+...+...|++++|++.|+++. ...|+..++..
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~ 741 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKAL------KRAPSSQNAIK 741 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHH------hhCCCchHHHH
Confidence 445555555555555555555555555544322 44444455555555555555555555555 12233344444
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+..++.+.|++++|.+.++.+.+..+.....+..+...|...|+..+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 44444445555555555554444444433344444444444444333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=190.58 Aligned_cols=299 Identities=12% Similarity=0.047 Sum_probs=159.2
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCCH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD---VYSYNIWLSSCGSQGST 262 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd---~~~~~~ll~~~~~~g~~ 262 (535)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555555555555542 22334555555555555555555555555554321111 13345555555556666
Q ss_pred hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc----chHHHHHHHHHhcCCHHHHHH
Q 009424 263 EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR----VPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~ 338 (535)
+.|..+|+.+.+. -+.+..+++.++..|.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|+.
T Consensus 124 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666655532 1334455555666666666666666666665543322211 123344445555666666666
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
.|+++.+..+. +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 66665554322 123444555566666666666666666654433222344556666666666666666666666553
Q ss_pred CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhcCCCCCh
Q 009424 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE---ESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
.|+...+..++..+.+.|++++|.++++++. ...|+..++..++..+.. .|+.+++..+++++.+.++.++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l------~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQL------RRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH------HhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 2344444556666666666666666666665 234666666655554443 3456666666666665544444
Q ss_pred h
Q 009424 496 K 496 (535)
Q Consensus 496 ~ 496 (535)
+
T Consensus 353 p 353 (389)
T PRK11788 353 P 353 (389)
T ss_pred C
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=191.42 Aligned_cols=310 Identities=14% Similarity=0.099 Sum_probs=247.1
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC---cchHHHHHHHHHhcCCh
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLK-DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH---SLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~ 227 (535)
.+...|++++|...|.++.+..| +..+|..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45667888888888888876634 556888898999999999999999999887542221 24678888899999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998763 456788899999999999999999999998864211111 22456677888899999999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
|+++.+... .+...+..+...|.+.|++++|+++|+++....+.....++..++.+|...|++++|...++.+.+..
T Consensus 203 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 203 LKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 999876432 23557778889999999999999999999886555444678889999999999999999999998764
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---cccHHHHHHHHHHhHHhccCCCCCCCH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR---ERRILEALSCLKGAFAAEGAKSWRPKP 461 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~g~~p~~ 461 (535)
|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.++++.++++|. +.+++|++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV----GEQLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH----HHHHhCCC
Confidence 45566788999999999999999999998875 5888899988887764 568999999999999 66777776
Q ss_pred HHHHHHHHHHHhcCCh
Q 009424 462 VNVINFFKACEEESDM 477 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~ 477 (535)
. .+|.+.|..
T Consensus 354 ~------~~c~~cg~~ 363 (389)
T PRK11788 354 R------YRCRNCGFT 363 (389)
T ss_pred C------EECCCCCCC
Confidence 6 236555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-18 Score=175.83 Aligned_cols=329 Identities=9% Similarity=-0.040 Sum_probs=194.4
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHH
Q 009424 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYV 187 (535)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 187 (535)
...++..+.+.|+++.|..+++.++... +-+......++......|++++|...|+++... +.+...|..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~---p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA---KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC---CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4455666777777777777777777664 333444444445555567777777777766555 334556666666667
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 7777777777777666542 223455666666677777777777777666554322 22222222 23556677777777
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHH----HHHHHHHH
Q 009424 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE----VYRVWNLY 343 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m 343 (535)
.++.+.+.. -.++...+..+...+.+.|++++|...|++..+..+ .+...+..+...|...|++++ |+..|++.
T Consensus 199 ~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 199 LARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 766665421 112233344445566666777777777776665432 234455566666666666664 56666666
Q ss_pred HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-
Q 009424 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS- 422 (535)
Q Consensus 344 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 422 (535)
....+. +...+..+...+...|++++|...+++..+..+. +...+..+..+|.+.|++++|...|+++.+.+ |+.
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 664433 2345666666666667777777776666655433 44555566666666777777777766666542 232
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+..+...+...|+.++|++.|+++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223334455666667777777776666
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-18 Score=187.27 Aligned_cols=415 Identities=11% Similarity=0.016 Sum_probs=296.4
Q ss_pred HHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh------------
Q 009424 78 RKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS------------ 144 (535)
Q Consensus 78 ~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------ 144 (535)
..+...|+++ +|+..|++.++ ..| +...+..+...+.+.|++++|+..|+..++...... ...
T Consensus 277 ~~~~~~g~~~-~A~~~l~~aL~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~-~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 277 LAAVDSGQGG-KAIPELQQAVR--ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS-NRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHCCCHH-HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-chhHHHHHHHhhhHH
Confidence 4456678888 88888888877 344 667777888888888999999998888887652111 111
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
........+.+.|++++|+..|++.... +.+...+..+...|.+.|++++|++.|++..+.. +.+...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 1112244567888889999888887766 3456677788888888899999999998888753 234455666666664
Q ss_pred cCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc
Q 009424 224 IKEYDEVESMVSEMKEKGIR--------LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295 (535)
Q Consensus 224 ~g~~~~a~~~~~~m~~~g~~--------pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 295 (535)
.++.++|+.+++.+...... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...|.+.
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 45778888877665332100 011234456667788999999999999988642 44567788888899999
Q ss_pred CCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---------hhHHHHHHHHHhcC
Q 009424 296 GQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN---------LGYHAMISSLARIG 366 (535)
Q Consensus 296 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---------~~~~~ll~~~~~~g 366 (535)
|++++|...|+++.+..+ .+...+..+...+...++.++|+..++.+......++. ..+......+...|
T Consensus 509 G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999999999876432 23334444555667788999999988876432221111 11234566788899
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (535)
+.++|.++++. .+.++..+..+...|.+.|++++|+..|++..+..+. +...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998872 2336667788899999999999999999999986554 68889999999999999999999999
Q ss_pred HhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh-----h-hHHHHHHHhHhhhhccc
Q 009424 447 GAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKE-----K-DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 447 ~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~-~~~~L~~~y~~~~~~~~ 513 (535)
... ...|+ ..++..+..++...|++++|.++++.+++..+..+ . .+..+..+|...|+..+
T Consensus 662 ~ll------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 662 KLP------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred HHh------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 887 34554 34556667788889999999999999987654322 1 45555666665555555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-17 Score=182.63 Aligned_cols=434 Identities=12% Similarity=0.031 Sum_probs=278.2
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHccChHHHHHHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWEL-----------------CRVVKELRKFRRYKHALEVYDW 131 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~-----------------~~ll~~~~~~~~~~~a~~~~~~ 131 (535)
|...+..++..+.+.|+.+ +|...++++.+. .|+...+ ....+.+...|++++|++.|+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~-~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSD-GAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5566788888889999999 999999998874 4544332 2223457788999999999999
Q ss_pred HHhcCCCcccCHhHH-HHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--
Q 009424 132 MNNRGERFRLSASDA-AIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGY-- 207 (535)
Q Consensus 132 ~~~~g~~~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-- 207 (535)
+.+.. +++.... ..........|+.++|.+.++++... +.+...+..+...+.+.|+.++|++.|+++....-
T Consensus 138 ~l~~~---p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 138 LFNGA---PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HccCC---CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 88765 2222211 11112223458899999999988876 44567788888888889999999999988754320
Q ss_pred ----------------C--------------cCcchH---------------------HHHHHHHHhcCChhHHHHHHHH
Q 009424 208 ----------------A--------------VHSLPY---------------------NVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 208 ----------------~--------------p~~~~~---------------------~~li~~~~~~g~~~~a~~~~~~ 236 (535)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 110000 0113345677899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHH
Q 009424 237 MKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS------------TMATMYIKMGQVEKAEES 304 (535)
Q Consensus 237 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~ 304 (535)
.++.. +.|...+..+..++.+.|++++|+..|++..+...-.++...|. .....+.+.|++++|...
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88864 33777888888899999999999999998875321111222222 223456788999999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHH---------------------------
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA--------------------------- 357 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------------------------- 357 (535)
|++..+..+ .+...+..+...+...|++++|++.|++..+..+... ..+..
T Consensus 374 ~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 999877532 3455677788888999999999999998887544422 11111
Q ss_pred ---------------HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 009424 358 ---------------MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 358 ---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 422 (535)
+...+...|++++|.+.+++.++..+. ++..+..+...|.+.|++++|...|+++.+.... +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 223345678899999999988877654 6777888888999999999999999988764332 33
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhHHhcc------------------------C-----------CCCCCCHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAFAAEG------------------------A-----------KSWRPKPVNVINF 467 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------------~-----------~g~~p~~~~~~~l 467 (535)
..+..+...+...++.++|+..++.+..... . ....++...+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 3332222223333444444333332210000 0 0011222334444
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
...+.+.|++++|...+++.++..+.....+..+..+|...|+.++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4555556666666666666666555544455555666655555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-17 Score=167.18 Aligned_cols=397 Identities=10% Similarity=-0.008 Sum_probs=279.4
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHH
Q 009424 75 AIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIA 154 (535)
Q Consensus 75 ~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~ 154 (535)
..-..+.+.|+++ .|+..|++... ..|+...|..+..++...|++++|++.+...++.. +.+...+..+..+|.
T Consensus 132 ~~G~~~~~~~~~~-~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 132 EKGNKAYRNKDFN-KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 4445667778888 88888888776 56777777788888888888888888888888775 445667777888888
Q ss_pred hhCCHhhHHHHHhhCCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH------------------
Q 009424 155 KVHGVASAEDFFLSLPDTL-KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN------------------ 215 (535)
Q Consensus 155 ~~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~------------------ 215 (535)
..|++++|...|....... .+......++..+.. ..+.....+..+.. +++..++.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhh
Confidence 8888888887765443211 111111111111111 01111111111110 01111111
Q ss_pred ---------------HHHHHH---HhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 216 ---------------VMMTLY---MKIKEYDEVESMVSEMKEKG-IRL-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 216 ---------------~li~~~---~~~g~~~~a~~~~~~m~~~g-~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
.+...+ ...+++++|.+.|+...+.+ ..| +...+..+...+...|++++|...++...+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 111000 12367889999999998865 233 4556777788888999999999999998853
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 276 KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 276 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
. +.+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|+..|++.....+. +...+
T Consensus 361 ~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 361 D--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 2 3346688888999999999999999999987653 235678888899999999999999999999886544 33567
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh------HHHHHH
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNST------SWETLA 429 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li 429 (535)
..+...+.+.|++++|...++..++..+. +...++.+...+...|++++|.+.|++..+.....+.. .++...
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 77888899999999999999998876433 67889999999999999999999999988753321111 122222
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
..+...|++++|.++++++. .+.|+. ..+..+...+...|++++|.+.+++..+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl------~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKAL------IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33344689999999999988 244544 46788888999999999999999999877554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-17 Score=170.74 Aligned_cols=333 Identities=11% Similarity=0.022 Sum_probs=270.4
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHH
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLI 153 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~ 153 (535)
--++..+.+.|++. +|+.++...+.....+ ...+..++.++...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 46 ~~~~~~~~~~g~~~-~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---P~~~~a~~~la~~l 120 (656)
T PRK15174 46 ILFAIACLRKDETD-VGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN---VCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHhcCCcc-hhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHH
Confidence 34677888999999 9999999998854333 3445556677778999999999999999886 55677788889999
Q ss_pred HhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHH
Q 009424 154 AKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVES 232 (535)
Q Consensus 154 ~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 232 (535)
...|++++|...|++.... +.+...|..+...+.+.|++++|...++.+....- .+...+..+ ..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998776 45678899999999999999999999998876532 223334333 45788999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 009424 233 MVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK----AEESLRRV 308 (535)
Q Consensus 233 ~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m 308 (535)
.++.+.+....++...+..+..++...|++++|...++...+.. +.+...+..+...|.+.|++++ |...|++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999887544455566666788899999999999999998642 5567888999999999999986 89999998
Q ss_pred HhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH
Q 009424 309 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR 388 (535)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 388 (535)
.+..+ .+...+..+...+.+.|++++|+..+++.....+.. ...+..+..++.+.|++++|...++.+.+..+. +..
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chH
Confidence 77432 245688899999999999999999999999865553 355677889999999999999999999876543 334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
.+..+..++...|+.++|...|++..+..+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 445567788999999999999999987543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-17 Score=174.06 Aligned_cols=411 Identities=8% Similarity=-0.026 Sum_probs=307.8
Q ss_pred HHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhh
Q 009424 77 FRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKV 156 (535)
Q Consensus 77 i~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~ 156 (535)
+......|+.. +|+.++.+.... -..+...+..+..++...|++++|.++++..++.. +.+......+...+...
T Consensus 22 ~~ia~~~g~~~-~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 22 LQIALWAGQDA-EVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE---PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHcCCHH-HHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHC
Confidence 44556789999 999999998762 23455568889999999999999999999999875 45566777888899999
Q ss_pred CCHhhHHHHHhhCCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHH
Q 009424 157 HGVASAEDFFLSLPDTL-KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVS 235 (535)
Q Consensus 157 g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 235 (535)
|+.++|...+++..... .+.. |..+...+...|+.++|+..+++..+.. +.+...+..+...+...+..++|++.++
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999987763 4556 8889999999999999999999999874 3345566777888888999999999887
Q ss_pred HHHHcCCCCCH------HHHHHHHHHHh-----cCCCH---hHHHHHHHHhHhCCCCCCCHH-HH----HHHHHHHHhcC
Q 009424 236 EMKEKGIRLDV------YSYNIWLSSCG-----SQGST---EKMEGVFELMKVDKAVNPNWT-TF----STMATMYIKMG 296 (535)
Q Consensus 236 ~m~~~g~~pd~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~-~~----~~li~~~~~~g 296 (535)
.... .|+. .....++.... ..+++ ++|+..++.+.+...-.|+.. .+ ...+..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6554 2221 11222222222 22234 778888888885322233321 11 11133456779
Q ss_pred CHHHHHHHHHHHHhcccC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhhHHHHHHHHHhcCCHhhHH
Q 009424 297 QVEKAEESLRRVESRITG-RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV---TNLGYHAMISSLARIGDIEGME 372 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~ 372 (535)
++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|+++....+.. .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999876532 322 12225678999999999999999987654332 1234566777889999999999
Q ss_pred HHHHHHHhcCC-----------CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH
Q 009424 373 KIFEEWLSVKS-----------SYD---PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438 (535)
Q Consensus 373 ~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 438 (535)
++++.+.+..+ .|+ ...+..+...+...|+.++|+++++++....+. +...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 99999886532 123 234567788899999999999999999886544 688899999999999999
Q ss_pred HHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh--hHHHHHHHh
Q 009424 439 LEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK--DYMSLIGLT 505 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~L~~~y 505 (535)
++|++.++++. .+.||. ..+......+...|++++|+.+++++++..+.... .+.-..+.+
T Consensus 410 ~~A~~~l~~al------~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~~~ 473 (765)
T PRK10049 410 RAAENELKKAE------VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARDVH 473 (765)
T ss_pred HHHHHHHHHHH------hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 99999999999 566875 45556666888999999999999999998888766 344444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-18 Score=159.08 Aligned_cols=381 Identities=12% Similarity=0.074 Sum_probs=315.1
Q ss_pred CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHH
Q 009424 105 TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLN 184 (535)
Q Consensus 105 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~ 184 (535)
-..+|+-+...+-..|++..|+..+..+++.. +.....+..+..++...|+.+.|...|.+..+..|+.+...+-+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~---p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK---PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC---chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 56788889999999999999999999999876 455677888888999999999999999988877677665544443
Q ss_pred -HHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCH
Q 009424 185 -AYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD-VYSYNIWLSSCGSQGST 262 (535)
Q Consensus 185 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~g~~ 262 (535)
.....|++++|...|.+..+.. +-=.+.|+.|...+-..|+...|+..|++.++.+ |+ ...|-.|-..|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence 4445799999999998887753 2236789999999999999999999999988764 33 45677888889999999
Q ss_pred hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 009424 263 EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
+.|...+....... +....++..|...|...|.+|.|++.+++..+ ..|+ ...|+.|..++-..|++.+|.+.|+
T Consensus 269 d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred hHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999998887432 34566788888889999999999999999876 3455 5589999999999999999999999
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN 421 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 421 (535)
+.....+... ...+.|...+...|.+++|..+|....+..+. -....+.|...|-..|++++|...+++... ++|+
T Consensus 345 kaL~l~p~ha-dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLCPNHA-DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhCCccH-HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 9988654432 56788999999999999999999988765433 345778899999999999999999999886 5665
Q ss_pred -HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHH
Q 009424 422 -STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYM 499 (535)
Q Consensus 422 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 499 (535)
...|+.+...|-..|+.+.|++.+.+++ .+.|.. ..++.|...+...|++.+|.+-++..++..++.+..|-
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAI------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHH------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 6789999999999999999999999999 567764 47888889999999999999999999999988777555
Q ss_pred HHHHHh
Q 009424 500 SLIGLT 505 (535)
Q Consensus 500 ~L~~~y 505 (535)
.|....
T Consensus 495 Nllh~l 500 (966)
T KOG4626|consen 495 NLLHCL 500 (966)
T ss_pred HHHHHH
Confidence 444444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-16 Score=165.95 Aligned_cols=392 Identities=11% Similarity=-0.029 Sum_probs=283.3
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHH
Q 009424 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYV 187 (535)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 187 (535)
+......+.+.|+++.|+..|+..++.. ++...+..+..+|.+.|++++|.+.++...+. +.+...|..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~----p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK----PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4455667888899999999999998765 35667888888999999999999999988776 345678999999999
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHH--------------
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI--RLDVYSYNI-------------- 251 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~pd~~~~~~-------------- 251 (535)
..|++++|+.-|......+- .+......++..+... .+........+... .|.......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999998877655431 1111122222222111 11111111111110 001000000
Q ss_pred -------------HHHH------HhcCCCHhHHHHHHHHhHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009424 252 -------------WLSS------CGSQGSTEKMEGVFELMKVDKAVNP-NWTTFSTMATMYIKMGQVEKAEESLRRVESR 311 (535)
Q Consensus 252 -------------ll~~------~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 311 (535)
++.. ....+++++|.+.|+.........| +...|+.+...+...|++++|...|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0100 1223678899999999885332233 4567888889999999999999999998764
Q ss_pred ccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH
Q 009424 312 ITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390 (535)
Q Consensus 312 g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 390 (535)
.|+ ...|..+...+...|++++|+..|++.....+. +...|..+...+...|++++|...|++.++..+. +...+
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 454 457888889999999999999999999886444 3467888999999999999999999999887654 67778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC-CCCCCHH-HHHHHH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK-SWRPKPV-NVINFF 468 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-g~~p~~~-~~~~ll 468 (535)
..+...+.+.|++++|+..|++..+..+. +...|+.+...+...|++++|++.|+++.+..+.. +..++.. .+...+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88999999999999999999999875433 67889999999999999999999999999322110 0111111 111122
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccc
Q 009424 469 KACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~ 514 (535)
..+...|++++|.+++++.++..+.....+..|...|...|+.+++
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 2334469999999999999998877766889999999888887773
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=157.92 Aligned_cols=418 Identities=12% Similarity=0.059 Sum_probs=330.5
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHH
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~ 152 (535)
-..|..-.-+.|++. +|.+--+..-++ -..+..+...+-..+....+++...+--...++.. +.-...+..+.+.
T Consensus 51 ~l~lah~~yq~gd~~-~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~---~q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYK-QAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN---PQGAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHH-HHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc---chHHHHHHHHHHH
Confidence 345556667788888 887754443322 11122222233334455555555544444444443 4456788889999
Q ss_pred HHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHH-HHHHHhcCChhHH
Q 009424 153 IAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVM-MTLYMKIKEYDEV 230 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a 230 (535)
+-..|++++|..+++.+.+. +..+..|..+..++...|+.+.|.+.|.+..+.+ |+.....+- ...+-..|++++|
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchh
Confidence 99999999999999998887 4467899999999999999999999999988763 655544443 3444457999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
...|.+..+.. +--.+.|+.|-..+-..|+.-.|++.|++..+ +.|+ ...|-.|...|...+.+++|...+.+..
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99998888763 22356788888888999999999999999985 3555 4578889999999999999999999876
Q ss_pred hcccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH
Q 009424 310 SRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR 388 (535)
Q Consensus 310 ~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 388 (535)
. ..|+ .+.+..+...|...|.++-|+..|++..+..+.-. ..|+.+..++-..|++.+|.+.+...+..... ...
T Consensus 280 ~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-had 355 (966)
T KOG4626|consen 280 N--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HAD 355 (966)
T ss_pred h--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHH
Confidence 5 3454 55777788889999999999999999988655433 68999999999999999999999999876544 567
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVIN 466 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ 466 (535)
..+.|...|...|.+++|..+|....+. .|. ...++.|...|-++|++++|+..|+++. .++|+. ..|+.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal------rI~P~fAda~~N 427 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL------RIKPTFADALSN 427 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH------hcCchHHHHHHh
Confidence 7888999999999999999999998874 344 5678899999999999999999999999 789986 47888
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+-..+...|+++.|.+.+.+.+..++.-....+.|...|..+|.-.+
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence 88899999999999999999998888777788999999987777666
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-16 Score=167.26 Aligned_cols=395 Identities=8% Similarity=0.002 Sum_probs=298.2
Q ss_pred CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHH
Q 009424 103 SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGA 181 (535)
Q Consensus 103 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~ 181 (535)
..++.-..-.+......|+.++|++++....... +.+...+..+...+.+.|++++|..+|++.... +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455556677888899999999999999988643 556667889999999999999999999997665 356778889
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 182 LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 182 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
+...+.+.|++++|+..+++..+.. +.+.. |..+...+...|+.++|+..++++.+... .+...+..+..++...|.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998873 34455 88888999999999999999999999753 355666677888888999
Q ss_pred HhHHHHHHHHhHhCCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-ccCCCcc-hHH----
Q 009424 262 TEKMEGVFELMKVDKAVNPNW------TTFSTMATMYI-----KMGQV---EKAEESLRRVESR-ITGRDRV-PYH---- 321 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~~---- 321 (535)
.+.|.+.++...+ .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 SAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred hHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 9999999987763 2331 11222222222 22334 7788889888754 1223322 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC---CHHHHHHHHHHHH
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY---DPRIANLMMSWYV 398 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 398 (535)
..+.++...|+.++|+..|+.+...++..+......+..++...|++++|...++.+.+..... .......+..++.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 1134556779999999999999887543222233345778999999999999999987654321 1345666777889
Q ss_pred HcCChhHHHHHHHHHHHcCC-----------CCC---HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHH
Q 009424 399 KEGNFDKAEAFFNSIIEEGG-----------KPN---STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVN 463 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~ 463 (535)
..|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|+++++++. ...| +...
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al------~~~P~n~~l 395 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA------YNAPGNQGL 395 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHH
Confidence 99999999999999987532 123 2345667788899999999999999999 2344 4567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+..+...+...|++++|++.+++.++..|.....+..+...+...+++.+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 77888889999999999999999999988776666667777777777766
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-16 Score=138.88 Aligned_cols=415 Identities=14% Similarity=0.151 Sum_probs=290.2
Q ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC--hH-HHHHHHHHHHhcCCCcccCHhHH
Q 009424 70 MIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRR--YK-HALEVYDWMNNRGERFRLSASDA 146 (535)
Q Consensus 70 ~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~-~a~~~~~~~~~~g~~~~~~~~~~ 146 (535)
+++=|.|+.. ..+|... ++.-+|+.|.+.|+..++..-..+++.-+-.+. .- .-.+.|-.|.+.| +.+..+
T Consensus 116 V~~E~nL~km-IS~~EvK-Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S~~s- 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVK-DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDSTSS- 189 (625)
T ss_pred hcchhHHHHH-Hhhcccc-hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---cccccc-
Confidence 4556666654 3456677 788888888888887777766666554432221 11 1123333344443 111111
Q ss_pred HHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC
Q 009424 147 AIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 226 (535)
.+.|++.+ -+|+..+ ++..+|.+||.+.++--..+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 190 -------WK~G~vAd--L~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 190 -------WKSGAVAD--LLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred -------cccccHHH--HHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 23454443 5666666 478899999999999999999999999999888888999999999765433
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH----HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHH-H
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM----EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK-A 301 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A 301 (535)
...++..+|....+.||..|+|+++++.++.|+++.| .+++.+|++ -|+.|...+|..+|..+.+.++..+ |
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhh
Confidence 2378899999999999999999999999999988764 567778885 6999999999999999999888754 4
Q ss_pred HHHHHHHHhc----ccCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCch---hhHHHHHHHHHhcC
Q 009424 302 EESLRRVESR----ITGR----DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSV----FPGVTN---LGYHAMISSLARIG 366 (535)
Q Consensus 302 ~~~~~~m~~~----g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~---~~~~~ll~~~~~~g 366 (535)
..++.++... .++| |...|...+..|.+..+.+-|.++..-.+.. .+.++. +-|..+..+.|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 4455554332 2333 3445667788888888888888877665441 122222 45778888899999
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc-c--------
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER-R-------- 437 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~-------- 437 (535)
.++.-...|+.|+..-+-|+..+...++.+..-.|.++-..+++..++..|..-+...-..+...+++.. +
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 9999999999999888888999999999999999999999999999988775545555444555555443 1
Q ss_pred HHH-----HHHH-------HHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-Chh-hHHHHHH
Q 009424 438 ILE-----ALSC-------LKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR-KEK-DYMSLIG 503 (535)
Q Consensus 438 ~~~-----A~~~-------~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~L~~ 503 (535)
+.. |..+ -.+|. ...+ .....+.+.-.+.+.|..++|.+++..+.+.+-. |.. ..++|++
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r----~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQR----AQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH----hccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 111 1111 11122 2233 3455666666788999999999999999655443 322 6777888
Q ss_pred HhHhhhhccc
Q 009424 504 LTDEAVAENN 513 (535)
Q Consensus 504 ~y~~~~~~~~ 513 (535)
....+.+.+.
T Consensus 567 l~d~a~~~~s 576 (625)
T KOG4422|consen 567 LMDSAKVSNS 576 (625)
T ss_pred HHHHHHhcCC
Confidence 7766555544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-15 Score=155.20 Aligned_cols=400 Identities=10% Similarity=-0.013 Sum_probs=238.6
Q ss_pred HhccCCCCccHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhC
Q 009424 80 LSLMDNPQLGSASVLNDWEKGGRSLTK--WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVH 157 (535)
Q Consensus 80 ~~~~g~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g 157 (535)
..+.|++. .|+..|++..+ ..|+. ..+ .++..+...|+.++|+..++..... -+........+...|...|
T Consensus 44 ~~r~Gd~~-~Al~~L~qaL~--~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 44 RARAGDTA-PVLDYLQEESK--AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHhCCCHH-HHHHHHHHHHh--hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcC
Confidence 35677777 78888888776 44543 233 6677777778888888887777622 2344444444566777778
Q ss_pred CHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHH
Q 009424 158 GVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 158 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 236 (535)
++++|.++|+++.+. +.|...+..++..|.+.++.++|++.++++... .|+...+-.++..+...++..+|++.+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 888888888877766 334566667777777788888888888777665 34544443333333334555557888887
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHH----------------------------------------------
Q 009424 237 MKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFE---------------------------------------------- 270 (535)
Q Consensus 237 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~---------------------------------------------- 270 (535)
+.+.. +-+...+..+..+..+.|-...|.++..
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 77764 2345555566666666664444443333
Q ss_pred --HhHhCCCCCCC-HHHH-H---HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 271 --LMKVDKAVNPN-WTTF-S---TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 271 --~~~~~~~~~~~-~~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
.+...-+-.|. ...| . -.+-++.+.|+..++.+.|+.+...|.+....+-..+.++|...+++++|+.+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 22221111121 1111 1 223345566677777777777766554433445556667777777777777777766
Q ss_pred HhhCC----CC-chhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHHcCChh
Q 009424 344 RSVFP----GV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS-----------SYDP---RIANLMMSWYVKEGNFD 404 (535)
Q Consensus 344 ~~~~~----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~g~~~ 404 (535)
....+ .+ +......|.-++...+++++|..+++.+.+..+ .|++ ..+..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 44321 11 112235666677777777777777777665221 1221 22334555566677777
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAF 483 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~ 483 (535)
+|++.++++....+. |...+..+...+...|.+.+|.+.++.+. .+.|+. .+......+....|++++|..+
T Consensus 434 ~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~------~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 434 TAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVE------SLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh------hhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777777777665444 66666677777777777777777776555 345543 3444555566666777777777
Q ss_pred HHHHhcCCCCChh
Q 009424 484 VALLRQPGYRKEK 496 (535)
Q Consensus 484 ~~~~~~~~~~~~~ 496 (535)
.+.+.+..|+...
T Consensus 507 ~~~l~~~~Pe~~~ 519 (822)
T PRK14574 507 TDDVISRSPEDIP 519 (822)
T ss_pred HHHHHhhCCCchh
Confidence 7777666666544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-14 Score=146.81 Aligned_cols=386 Identities=11% Similarity=-0.052 Sum_probs=286.3
Q ss_pred HHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHh
Q 009424 115 ELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRG 193 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~ 193 (535)
...+.|++..|+..+.++.+.. ....+.+. .++..+...|+.++|+..+++.... ........++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3478899999999999999886 22222334 8888889999999999999998851 122333334456888899999
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
+|+++|+++.+.. +-+...+..++..+...++.++|++.+..+.+. .|+...+..++..+...++..+|.+.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999875 334667778888999999999999999999887 4566666555555555666766999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------------------------------
Q 009424 274 VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR----------------------------------------------- 306 (535)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----------------------------------------------- 306 (535)
+.. +.+...+..++....+.|-...|.++..
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 642 4456666766666666664444433333
Q ss_pred -HHHhc-ccCCCcc-hH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 307 -RVESR-ITGRDRV-PY----HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 307 -~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
.+... +..|... .| .-.+-++...|+..++++.|+.++..+...+..+-..+.++|...+.+++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 22211 1112211 12 12456778889999999999999988877667788899999999999999999999987
Q ss_pred hcCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------------CCCH-hHHHHHHHHHHccccHHH
Q 009424 380 SVKS-----SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-------------KPNS-TSWETLAEGHIRERRILE 440 (535)
Q Consensus 380 ~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~li~~~~~~g~~~~ 440 (535)
.... .++......|.-+|...+++++|..+++.+.+..+ .||- ..+..++..+...|+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6542 22444457889999999999999999999987322 1222 224456677888999999
Q ss_pred HHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccc
Q 009424 441 ALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~ 514 (535)
|.+.++++. ...| |.......-..+...|...+|++.++......+.+......+...+.+.+.|.++
T Consensus 435 Ae~~le~l~------~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 435 AQKKLEDLS------STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHH------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 999999998 2344 6677888888999999999999999888888777666777888888777777774
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-13 Score=144.53 Aligned_cols=389 Identities=11% Similarity=0.011 Sum_probs=257.6
Q ss_pred CHHHHHHH-HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh-hCCHhhHHHHHhhCCCCCCCHHHHHHH
Q 009424 105 TKWELCRV-VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK-VHGVASAEDFFLSLPDTLKDRRVYGAL 182 (535)
Q Consensus 105 ~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~~~l 182 (535)
++.+.... .+.|...++|++|+.++..+.+.+ +.+......+...|.. .++ +.+..++....+ .|...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~---pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN---TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHHHHHH
Confidence 34444444 677788888899999999888886 4445556666667777 366 777777664333 678888899
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCC-cCcchHH------------------------------HHHHH-----------
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYA-VHSLPYN------------------------------VMMTL----------- 220 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~------------------------------~li~~----------- 220 (535)
...|.+.|+.++|..+++++...... |+..+|- .++..
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999988887643211 1111110 00111
Q ss_pred ----------------------------------------------------HHhcCChhHHHHHHHHHHHc-C-CCCCH
Q 009424 221 ----------------------------------------------------YMKIKEYDEVESMVSEMKEK-G-IRLDV 246 (535)
Q Consensus 221 ----------------------------------------------------~~~~g~~~~a~~~~~~m~~~-g-~~pd~ 246 (535)
..+.|+.++|.++|+..... + -.++.
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 12344555555555544431 1 12233
Q ss_pred HHHHHHHHHHhcCCC---HhHHHHH----------------------HHHhHhCCCC-CC--CHHHHHHHHHHHHhcCCH
Q 009424 247 YSYNIWLSSCGSQGS---TEKMEGV----------------------FELMKVDKAV-NP--NWTTFSTMATMYIKMGQV 298 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~ 298 (535)
....-++..|.+.+. ..++..+ ......-.+. ++ +...|..+..++.. |+.
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 334455566655544 2222111 1111111111 33 56677777777766 788
Q ss_pred HHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
++|...|.+.... .|+......+...+.+.|++++|+..|+++....+ +...+..+..++.+.|+.++|...++..
T Consensus 493 ~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877776553 35544433344455688999999999998765422 2334556677888899999999999988
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCC
Q 009424 379 LSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWR 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~ 458 (535)
.+..+. +...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|++.++++. ...
T Consensus 569 L~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL------~l~ 639 (987)
T PRK09782 569 EQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL------ELE 639 (987)
T ss_pred HhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HhC
Confidence 876533 3333334444455569999999999998875 4567888888899999999999999999998 456
Q ss_pred CCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 459 PKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 459 p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
|+.. .+..+..++...|+.++|...+++.++..|.....+..+..+|...|+.++
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 7554 555555688889999999999999999888777788888888888777776
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-13 Score=145.05 Aligned_cols=416 Identities=9% Similarity=0.019 Sum_probs=269.0
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
+...+..|.+.|.+.|+++ +|+..+++..+ ..|+...|..++..+ ++.++|.++++++.+.. +.+..++..
T Consensus 77 n~~~~~~LA~~yl~~g~~~-~A~~~~~kAv~--ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~---P~n~~~~~~ 147 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDD-RARLLLEDQLK--RHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ---KACDAVPTL 147 (987)
T ss_pred CHHHHHHHHHHHHHCCCHH-HHHHHHHHHHh--cCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC---CCChhHHHH
Confidence 4567788999999999999 99999999887 566666655555333 88889999999999875 445555555
Q ss_pred HHHH--------HHhhCCHhhHHHHHhhCCCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHH
Q 009424 149 QLDL--------IAKVHGVASAEDFFLSLPDTLKDRRV-YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMT 219 (535)
Q Consensus 149 li~~--------~~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 219 (535)
+... |.+.+....+.+ .+.....|+..+ .-.+...|.+.|++++|++++.++.+.+ +.+..-+..+-.
T Consensus 148 la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ 224 (987)
T PRK09782 148 RCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFD 224 (987)
T ss_pred HHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 5555 777766666665 222221223443 4444888999999999999999998875 223333555556
Q ss_pred HHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH------------
Q 009424 220 LYMK-IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS------------ 286 (535)
Q Consensus 220 ~~~~-~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 286 (535)
.|.+ .++ +++..+++. .++-|...+..+.+.+.+.|+.++|.+++.++.....-.|+..+|-
T Consensus 225 ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~ 299 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ 299 (987)
T ss_pred HHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh
Confidence 6666 355 666666442 2334667777777777777777777777766642110011111110
Q ss_pred --------------------------------------------------------------------------------
Q 009424 287 -------------------------------------------------------------------------------- 286 (535)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (535)
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l 379 (987)
T PRK09782 300 ALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRL 379 (987)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHH
Confidence
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhc-c-c--------------------------------------------------
Q 009424 287 -TMATMYIKMGQVEKAEESLRRVESR-I-T-------------------------------------------------- 313 (535)
Q Consensus 287 -~li~~~~~~g~~~~A~~~~~~m~~~-g-~-------------------------------------------------- 313 (535)
-+.....+.|+.++|.++|+..... + -
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 0001112344455555555544320 0 0
Q ss_pred ------------CC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 314 ------------GR--DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 314 ------------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
.+ +...|..+..++.. ++.++|+..|.+..... |+......+...+...|++++|...++.+.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 00 12223333333333 55666777666665543 333333334444567888999988888875
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
.. .|+...+..+...+.+.|+.++|...+++..+.++. +...+..+...+.+.|++++|+..+++.. ...|
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL------~l~P 607 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSL------NIAP 607 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HhCC
Confidence 44 234445566677888889999999999888875422 23333333344445699999999999998 4668
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 460 KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+...+..+..++.+.|++++|...+++.++..+.....+..+...+...|+..+
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888899999999999999999999998888888888888888777766
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-13 Score=122.36 Aligned_cols=367 Identities=12% Similarity=0.100 Sum_probs=255.2
Q ss_pred CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHH
Q 009424 103 SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYG 180 (535)
Q Consensus 103 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~ 180 (535)
+-+..||.++|.++++.-..+.|.+++....... ...+..++|.+|.+-+-..+ .++..+|... .||..|+|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k--~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK--GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh--heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 3478899999999999999999999998887766 68888899998886654433 5566666544 69999999
Q ss_pred HHHHHHHHcCCHhHH----HHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH-HHHHHHHHHHc----CCCC----CHH
Q 009424 181 ALLNAYVRARMRGNA----ELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE-VESMVSEMKEK----GIRL----DVY 247 (535)
Q Consensus 181 ~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~----g~~p----d~~ 247 (535)
+++++.++.|+++.| .+++.+|++-|+.|...+|..+|..+.+.++..+ +..++.+++.. .++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 999999999988765 5677899999999999999999999999888754 55555555442 2333 556
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHhHhCCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHH
Q 009424 248 SYNIWLSSCGSQGSTEKMEGVFELMKVDKA---VNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYH 321 (535)
Q Consensus 248 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 321 (535)
.|.+.++.|.+..+.+.|.++..-+....+ +.|+ .+-|..+....++....+.-...|+.|.-+-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 788889999999999999999988764211 2333 2346677788888999999999999998877888888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG 401 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 401 (535)
.++++....|.++-.-++|.++...|-. ++..+ .++++..+....+.|+...-.-+-...+++-
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~~l-----------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHT-----FRSDL-----------REEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhh-----hhHHH-----------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999888775432 22222 2344455555554444332222222222221
Q ss_pred -Ch-hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh
Q 009424 402 -NF-DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 402 -~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~ 479 (535)
++ +..+..-.+|.+... .....+.+.-.+.+.|+.++|.+++.-..+...+--..|.-....-++.+.....+.-.
T Consensus 502 ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 11 111222233443322 44556666777788888888888888886211111122333334456666777778888
Q ss_pred HHHHHHHHhcCCCC
Q 009424 480 KEAFVALLRQPGYR 493 (535)
Q Consensus 480 a~~~~~~~~~~~~~ 493 (535)
|..+++.+...+..
T Consensus 580 A~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 580 AIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHcCch
Confidence 88888888665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-13 Score=133.62 Aligned_cols=423 Identities=10% Similarity=0.059 Sum_probs=269.8
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRS--LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASD 145 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 145 (535)
-|++.-|.|-+.|...|+++ .+..+...+...-.. .-...|--+.+++-..|+++.|.+.|-...+.. .......
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~-~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYE-RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 46777888888888888888 888888877664311 123446677888888888888888888777765 2223444
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhhCCCCCCC-HHHHHHHHHHHHHcC----CHhHHHHHHHHHHHCCCCcCcchH------
Q 009424 146 AAIQLDLIAKVHGVASAEDFFLSLPDTLKD-RRVYGALLNAYVRAR----MRGNAELLIDKMRDKGYAVHSLPY------ 214 (535)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~------ 214 (535)
+-.+..+|.+.|+++.+...|+.+....|| ..+.-.|-..|+..+ ..+.|..+..+..+.- +.|...|
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 455677888888888888888877665343 344444445555443 3344444444433332 2233334
Q ss_pred --------------------------------HHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHH
Q 009424 215 --------------------------------NVMMTLYMKIKEYDEVESMVSEMKEK---GIRLDV------YSYNIWL 253 (535)
Q Consensus 215 --------------------------------~~li~~~~~~g~~~~a~~~~~~m~~~---g~~pd~------~~~~~ll 253 (535)
|.+...+...|.+.+|...|...... ...+|. .+--.+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44444444445555555555444332 111111 1111122
Q ss_pred HHHhcCCCHhHHHHHHHHhHhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC
Q 009424 254 SSCGSQGSTEKMEGVFELMKVDKAVNPNWT-TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK 332 (535)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (535)
...-..++.+.|.+.|..+.+. .|+-+ .|--+..+--..+...+|...+....+. ...++..|..+-..+.+...
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhh
Confidence 2333344455555555555432 22211 1112221222234566677777666542 23455566666667777777
Q ss_pred HHHHHHHHHHHHhh-CCCCchhhHHHHHHHHHhc------------CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009424 333 KEEVYRVWNLYRSV-FPGVTNLGYHAMISSLARI------------GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK 399 (535)
Q Consensus 333 ~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 399 (535)
+..|..-|...... ...+|.++..+|.+.|.+. +..++|.++|.++++..+. |...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhh
Confidence 77777766665442 2234555555555544322 4577899999999887766 88888999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh
Q 009424 400 EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~ 479 (535)
.|++.+|..+|.+..+.... +..+|--+...|...|++..|+++|+.... ...-.-+......|-+++...|.+.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lk---kf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLK---KFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHH---HhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999986443 667899999999999999999999999884 34445567788889999999999999
Q ss_pred HHHHHHHHhcCCCCChh-hHHHHHH
Q 009424 480 KEAFVALLRQPGYRKEK-DYMSLIG 503 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~-~~~~L~~ 503 (535)
|.+.+.......+.++. .+|..+-
T Consensus 735 ak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999988888776 5554433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-13 Score=121.60 Aligned_cols=419 Identities=11% Similarity=0.003 Sum_probs=268.0
Q ss_pred HHHhccCCCCccHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh----HHHHHHHH
Q 009424 78 RKLSLMDNPQLGSASVLNDWEKGGRSLTKWELC-RVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS----DAAIQLDL 152 (535)
Q Consensus 78 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~~~li~~ 152 (535)
+-|..+.... +|+..|+-..+....|+.-.+. .+-..+.+.+.+..|++.|...+..- ...+.. ..+.+.-.
T Consensus 209 qqy~~ndm~~-ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv--psink~~rikil~nigvt 285 (840)
T KOG2003|consen 209 QQYEANDMTA-EALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV--PSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHhhhhHHHH-HHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc--cccchhhHHHHHhhcCee
Confidence 4455556666 7888888777776667655432 23345667788889999988877665 333333 33333345
Q ss_pred HHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCc------------chHHHHH--
Q 009424 153 IAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHS------------LPYNVMM-- 218 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------~~~~~li-- 218 (535)
+.+.|++++|..-|+...+..||..+--.|+-++..-|+-++..+.|.+|..--..||. ...|.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 67889999999999988777788877667777777789999999999999754322222 2122111
Q ss_pred ---HHHHhcC--ChhHHHHHHHHHHHcCCCCCHHH-------------HH--------HHHHHHhcCCCHhHHHHHHHHh
Q 009424 219 ---TLYMKIK--EYDEVESMVSEMKEKGIRLDVYS-------------YN--------IWLSSCGSQGSTEKMEGVFELM 272 (535)
Q Consensus 219 ---~~~~~~g--~~~~a~~~~~~m~~~g~~pd~~~-------------~~--------~ll~~~~~~g~~~~a~~~~~~~ 272 (535)
.-.-+.+ +.++++-.-..+..--+.||-.. +. .-.--+.+.|+++.|.+++.-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 11111111111111111111100 00 0011355666666666666555
Q ss_pred HhCCCCCC-----------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc
Q 009424 273 KVDKAVNP-----------------------------------NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR 317 (535)
Q Consensus 273 ~~~~~~~~-----------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 317 (535)
.+...-.. +....+.-.+.-..+|++++|.+.+++.......-..
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 43211000 1111111111122467899999999888653222222
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 318 VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
..||.= -.+-..|++++|++.|-++... ..-+......+.+.|....+..+|.+++.+.... ++.|+.+...|.+.|
T Consensus 526 alfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 233322 2356678999999999887664 2223456667888888899999999999887543 344889999999999
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH-HhcCC
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC-EEESD 476 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~-~~~g~ 476 (535)
-+.|+-..|.+..-.--.. +.-|..+..-|..-|....-+++|+.+|+++. -+.|+..-|..++..| .+.|+
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa------liqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA------LIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH------hcCccHHHHHHHHHHHHHhccc
Confidence 9999999999887655443 33477888888888999999999999999987 6899999999998876 57899
Q ss_pred hhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhh
Q 009424 477 MGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAV 509 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~ 509 (535)
+..|..+++..-+.-+++-....-|+......|
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999988776666557788888874443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-11 Score=122.95 Aligned_cols=370 Identities=12% Similarity=0.087 Sum_probs=275.9
Q ss_pred HHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHh
Q 009424 115 ELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRG 193 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~ 193 (535)
.+...|++++|..++..+++.. +.....|-.|...|-..|+.+++...+--.-.. +.|...|-.+-....+.|.++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3344499999999999999986 677888999999999999999999877655443 467899999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhcCCCHhHHHHHH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSY----NIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~----~~ll~~~~~~g~~~~a~~~~ 269 (535)
+|.-.|.+..+.. +++...+---+..|-+.|+...|.+-|.++.+...+.|..-+ -.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999875 555555556678899999999999999999987542233222 33455677788889999998
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC----------------------cchHH----HH
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD----------------------RVPYH----YL 323 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------------~~~~~----~l 323 (535)
+......+-..+...++.++..|.+...++.|......+.....++| ..+|. -+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 88775434455666788999999999999999998888866222222 11111 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVF--PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG 401 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 401 (535)
+-++.+....+....+........ +.-+...|.-+..++...|++..|..++..+......-+..+|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223333333333333333333333 333446788999999999999999999999988766667889999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhc----cCCCCCCCHHHHHHHHHHHHhcCCh
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAE----GAKSWRPKPVNVINFFKACEEESDM 477 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~g~~p~~~~~~~ll~a~~~~g~~ 477 (535)
..++|...|+......+. +...-..|-..+-+.|+.++|++.+..+..-. +..++.|+..........+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999885333 55666677788899999999999999965111 1345667766666666777888888
Q ss_pred hhHHHHHHHHhc
Q 009424 478 GSKEAFVALLRQ 489 (535)
Q Consensus 478 ~~a~~~~~~~~~ 489 (535)
++-..+...|+.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 776665555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-10 Score=110.93 Aligned_cols=327 Identities=9% Similarity=0.049 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
+|+.-...|.+.+.++-|+.+|....+- ++-+...|......=-..|..++...+|++....- +-....|-...+-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4555555566666677777777666554 23345556666655556677777777777776652 234444555555566
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVY 337 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 337 (535)
..|+...|+.++....+.. +.+...|-+-+..-..+..++.|+.+|.+... ..|+...|..-+...--.+..++|+
T Consensus 596 ~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 6788888888888877532 44666788888888888888888888887754 4567777776666666677888888
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009424 338 RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 417 (535)
+++++..+..+..+ ..|-.+...+-+.++++.|...|..-.+.- +..+..|-.|.+.--+.|++-.|..++++..-++
T Consensus 672 rllEe~lk~fp~f~-Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSFPDFH-KLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhCCchH-HHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 88888777654433 456667777777788888887777544332 2245677777777777888888888888887776
Q ss_pred CCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCC-------------------------CCCHHHHHHHHHHHH
Q 009424 418 GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSW-------------------------RPKPVNVINFFKACE 472 (535)
Q Consensus 418 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~-------------------------~p~~~~~~~ll~a~~ 472 (535)
++ |...|-..|..=.+.|+.+.|..+..++.+..+..|+ .-|+.....+...+.
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 66 7788888888888888888888777777654444443 234555666667777
Q ss_pred hcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
....++.|++.|.+.++.++....+|.-+...+...|..++
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 77889999999999999999888888888888877775444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-12 Score=122.83 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=195.7
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcCCCHhHHH
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN--IWLSSCGSQGSTEKME 266 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~--~ll~~~~~~g~~~~a~ 266 (535)
.|+++.|.+......+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888887777665542111 222333334446788888888888888765 34443322 3355677888888888
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-------chHHHHHHHHHhcCCHHHHHHH
Q 009424 267 GVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-------VPYHYLLSLYGSVGKKEEVYRV 339 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~ 339 (535)
..++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887542 556777888888888888888888888888776554322 1233334434444555666666
Q ss_pred HHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009424 340 WNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419 (535)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 419 (535)
++......+ .+......+..++...|+.++|.+++.+..+. .+|... .++.+....++.+++.+..+...+..+.
T Consensus 252 w~~lp~~~~-~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRKTR-HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHHHh-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 666544322 23456677888888888888888888888763 334422 1233334558888888888888876544
Q ss_pred CCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 420 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
|...+.++...|.+.+++++|.+.|+.+. ...|+..++..+..++.+.|+.++|.+++++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al------~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAAL------KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66677888888888889999999998888 4678888888888888888898888888887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-12 Score=125.06 Aligned_cols=414 Identities=12% Similarity=0.078 Sum_probs=274.2
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
.++.++...-.. -.-|+...+.|..-+.-.|++..+.++...+++....-..-...+--+..+|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 455555544332 2236677778889999999999999999999886521223344577789999999999999999998
Q ss_pred CCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC----ChhHHHHHHHHHHHcCC
Q 009424 169 LPDTLKDR--RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK----EYDEVESMVSEMKEKGI 242 (535)
Q Consensus 169 ~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~ 242 (535)
.....+|. ..+--|...|.+.|+++.+...|+...+.. +-+..+...+...|...+ ..+.|..++....+.-
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 77664544 345567789999999999999999998863 445667777777777665 4566666666666553
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH---hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---ccCCC
Q 009424 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFELMK---VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR---ITGRD 316 (535)
Q Consensus 243 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~ 316 (535)
+.|...|-.+-..+-...-+.. ...+.... ...+-.+-....|.+...+...|++++|...|+..... -..+|
T Consensus 411 ~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 3466677666666655443332 54444332 11223466677888888888888888888888877544 12233
Q ss_pred cc-------hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------------------------chhhHH
Q 009424 317 RV-------PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV---------------------------------TNLGYH 356 (535)
Q Consensus 317 ~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------------------------------~~~~~~ 356 (535)
.. -|| +...+-..++.+.|.+.|..+....|.- +...++
T Consensus 490 e~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 490 EGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 31 222 2233333444555555555544432221 112233
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH------------cCChhHHHHHHHHHHHcCCCCCHh
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKS-SYDPRIANLMMSWYVK------------EGNFDKAEAFFNSIIEEGGKPNST 423 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~ 423 (535)
.+...+.+...+..|.+-|..+.+.-. .+|+.+.-+|.+.|.. .+..++|+++|.+.....++ |..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhh
Confidence 333344444445555544443333211 2455555555554432 24567888888888876655 777
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC-CCCChh-hHHHH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP-GYRKEK-DYMSL 501 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~-~~~~L 501 (535)
.-|-+.-.++..|++.+|..+|.+..+ .. .-+..+|..+...|...|.+..|.++|+...+. ....+. +..+|
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrE----a~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVRE----AT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHH----HH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 888888889999999999999999993 33 235568899999999999999999999988755 545555 88999
Q ss_pred HHHhHhhhhccc
Q 009424 502 IGLTDEAVAENN 513 (535)
Q Consensus 502 ~~~y~~~~~~~~ 513 (535)
..+|-++|.+.+
T Consensus 723 ara~y~~~~~~e 734 (1018)
T KOG2002|consen 723 ARAWYEAGKLQE 734 (1018)
T ss_pred HHHHHHhhhHHH
Confidence 999988888887
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.5e-11 Score=108.03 Aligned_cols=372 Identities=13% Similarity=0.083 Sum_probs=244.8
Q ss_pred CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHH
Q 009424 101 GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYG 180 (535)
Q Consensus 101 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 180 (535)
+..-|.+-+-..-..+.+.|..+.|...|-..+..- +.....+.. ...-.-+.+.+..+....+. .+...-.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~---P~~W~AWle---L~~lit~~e~~~~l~~~l~~--~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY---PWFWSAWLE---LSELITDIEILSILVVGLPS--DMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC---CcchHHHHH---HHHhhchHHHHHHHHhcCcc--cchHHHH
Confidence 445565555444455566777777777777666543 333333333 33333444544444444433 1111111
Q ss_pred -HHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHh
Q 009424 181 -ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIR--LDVYSYNIWLSSCG 257 (535)
Q Consensus 181 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--pd~~~~~~ll~~~~ 257 (535)
-+..+|-...+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+.+.- -|..+|+.++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 223455566678888888888888876555444444445555677889999999998887421 26777877764433
Q ss_pred cCCCHhH-HHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 258 SQGSTEK-MEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 258 ~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
....+.- |..++ .+. .+. +.|+..+.+.|+-.++.++|...|++..+-++ .....|+.|-.-|....+...|
T Consensus 311 ~~skLs~LA~~v~-~id---KyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NID---KYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhHHHHHHHHHHH-Hhc---cCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHH
Confidence 3222221 22222 222 123 34777778888888889999999988876432 2456788888889999999999
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
++.++...+..|. |-..|-.+..+|.-.+...-|+-.|++..+..+. |..+|.+|.++|.+.++.++|++.|.+....
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999988875333 4578888999999888888888888888776544 8889999999999999999999999888876
Q ss_pred CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 417 GGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV--NVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 417 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
|-. +...+..+...|-+.++.++|...|.+-.+.....|..-+.. ...-|..-+.+.+++++|..+.......
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 544 667888888888888888998888887764322334333322 1222334567778888888777766655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-12 Score=123.72 Aligned_cols=283 Identities=10% Similarity=0.062 Sum_probs=211.0
Q ss_pred hCCHhhHHHHHhhCCCCCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH--HHHHHHHhcCChhHHHH
Q 009424 156 VHGVASAEDFFLSLPDTLKDRRVYGAL-LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN--VMMTLYMKIKEYDEVES 232 (535)
Q Consensus 156 ~g~~~~A~~~f~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~ 232 (535)
.|+++.|++.+...++..++...+-.+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888888888766642333333333 34447889999999999998775 34543332 33567888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 233 MVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW------TTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 233 ~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
.++++.+.. +-+......+...|.+.|+++.|.+++..+.+.....++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 3467778888889999999999999999998754332221 133344444445556666677777
Q ss_pred HHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 307 RVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
.+.+. .+.+......+...+...|+.++|..++++..+... +.. ..++.+....++.+++.+..+...+..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 66432 234667788889999999999999999988877433 321 12344445568999999999988877655 7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.....+...+.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788889999999999999999999999874 6888888999999999999999999999886
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=135.04 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=71.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCC-CcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGY-AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
...+.+.|++++|++++++-....- +.|..-|..+...+...+++++|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3444555555555555543322221 122333333444444455555565555555554322 33344444444 45555
Q ss_pred HhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009424 262 TEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI-TGRDRVPYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (535)
+++|.+++...-++ .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555544332 2344445555555555666666666555544321 1234445555555555566666666666
Q ss_pred HHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 009424 341 NLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420 (535)
Q Consensus 341 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 420 (535)
++..+..|. +......++..+...|+.+++.+++....+.. ..|+..+..+..+|...|+.++|...|++.......
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 655554333 22344455555555566665555555554433 224445555666666666666666666665553222
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|......+..++.+.|+.++|.++.+++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55555555666666666666666555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-10 Score=106.63 Aligned_cols=412 Identities=11% Similarity=0.041 Sum_probs=272.5
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
++..|-.--.-=...++.. .|.++|++.+... .-+...+-.-+..-.+.+.+..|..+++..+..- +--...+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~-RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyK 146 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQ-RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHH
Confidence 3444443333334455566 7777887776532 2233334455555667777778888888777653 222223333
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChh
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD 228 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 228 (535)
.+.+=-..|++..|+++|++-.+-.|+...|++.|+.=.+-+.++.|+.++++..-. .|++.+|--....=.+.|...
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 444445667888888888876666688888888888888888888888888877654 477777777777777777777
Q ss_pred HHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC-------------------------------
Q 009424 229 EVESMVSEMKEK-GI-RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD------------------------------- 275 (535)
Q Consensus 229 ~a~~~~~~m~~~-g~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------- 275 (535)
.|..+|....+. |- .-+...+++...-=..+..++.|.-+|.....+
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 777777665543 10 011122222222222333444444444333211
Q ss_pred -----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc--chHHHHHH--------HHHhcCCHH
Q 009424 276 -----------KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR--VPYHYLLS--------LYGSVGKKE 334 (535)
Q Consensus 276 -----------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~--------~~~~~g~~~ 334 (535)
..-+.|-.+|--.+..-...|+.+...++|++.... ++|-. .-|.-.|- .-....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 011345556666677677778888888888887754 33311 12222221 123457788
Q ss_pred HHHHHHHHHHhhCCCCchhhHHHHHHHHH----hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009424 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLA----RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFF 410 (535)
Q Consensus 335 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 410 (535)
.+.++|+..... +....+||.-+--.|+ +..++..|.+++... .|..|...++-..|..-.+.+++|...+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888774 2333467766655554 557889999999986 577888999999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 411 NSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 411 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
++..+.++. |..+|.-....=...|+.+.|..+|.-+.. ...+..-...|.+.|..=...|.++.|+.+++++++.
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~---qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAIS---QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc---CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999998776 888998888888889999999999999982 2223333567778888778889999999999999987
Q ss_pred CCCCh
Q 009424 491 GYRKE 495 (535)
Q Consensus 491 ~~~~~ 495 (535)
.....
T Consensus 537 t~h~k 541 (677)
T KOG1915|consen 537 TQHVK 541 (677)
T ss_pred cccch
Confidence 65443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-11 Score=121.94 Aligned_cols=290 Identities=11% Similarity=-0.022 Sum_probs=156.9
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHS-LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKME 266 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~ 266 (535)
..|+++.|.+.+.+..+.. |+. ..+-....++.+.|+++.|.+.+.+..+....++..........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3566666666666655442 332 2222333455566667777766666655421112223333455566666777777
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHH---HhcCCHHHHHHHHHHH
Q 009424 267 GVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY---GSVGKKEEVYRVWNLY 343 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m 343 (535)
..++.+.+.. +-+..+...+...|.+.|++++|.+.+..+.+.++.+....-..-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7776666532 4455566666666777777777777777666654332221111111111 2222223333344444
Q ss_pred HhhCCC---CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHHcCC
Q 009424 344 RSVFPG---VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY--VKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 344 ~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~ 418 (535)
....+. .+...+..+...+...|+.++|.+++++..+..+......+. ++..+ ...++.+.+.+.++...+..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 443332 134555666667777777777777777766654332111111 22222 224556666777766665422
Q ss_pred CCCH--hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 419 KPNS--TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 419 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
. |. ....++...+.+.|++++|.+.|+... .....||...+..+...+.+.|+.++|.+++++.
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~----a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVA----ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhH----HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 33 445566777777777777777777433 2245677777777777777777777777777664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-10 Score=107.85 Aligned_cols=416 Identities=9% Similarity=0.010 Sum_probs=227.6
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHH----HHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLND----WEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
+...|-+--.-=-++|+.+ .+.++..+ +...|+..+...|-.=..+|-..|..-.+..+...++..|..-.-...
T Consensus 439 d~~IWitaa~LEE~ngn~~-mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVD-MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred ChhHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 4556766666666677777 66666554 334466666666655556666666666666666655555532233344
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
++..-.+.|.+.+.++-|+.+|....+. +.+...|......--..|..++-..+|++.... ++-....|-....-+-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHh
Confidence 5555555555566666666665554443 334445555554444455555555555555543 12223334444444445
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 224 IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 224 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
.|+...|..++.+.-+.. +-+...|-.-+..-..+.+++.|+.+|.+... ..|+..+|.--+..---.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 555555555555554443 12444455555555555555555555555543 23444444444444444455555555
Q ss_pred HHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhc
Q 009424 304 SLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 381 (535)
++++..+. -|+-. .|-.+-+.+-+.++.+.|.+.|..-.+. .|.. -.|..+...=-+.|.+-.|+.+++.....
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 55554432 12222 3444444445555555555544443332 1111 23444444444444555555555554444
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----------------------------CCCCCHhHHHHHHHHH
Q 009424 382 KSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE-----------------------------GGKPNSTSWETLAEGH 432 (535)
Q Consensus 382 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------------------------~~~p~~~~~~~li~~~ 432 (535)
+++ +...|-..|.+-.+.|+.+.|..+..+..+. ...-|....-.+...+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 433 4445555555555555555544444333321 0112555566666777
Q ss_pred HccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHH
Q 009424 433 IRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSL 501 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L 501 (535)
-...+++.|.+.|.+.. .+.||. .+|..+......+|.-+.-.++++......|.-...|-+.
T Consensus 828 w~e~k~~kar~Wf~Rav------k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAV------KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHH------ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 88889999999999999 445554 5888889999999999999999999998887765555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=132.23 Aligned_cols=259 Identities=15% Similarity=0.097 Sum_probs=98.0
Q ss_pred HHHHHHHhhCCHhhHHHHHhhC-CCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 148 IQLDLIAKVHGVASAEDFFLSL-PDT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~-~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
.+...+.+.|++++|.+++++. ... +.|...|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3355566677777777777432 222 134455666666666778888888888888766422 44556666666 677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+++++|.+++...-+.. ++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888777665542 4556667777778888888888888888765444456777788888888888888888888
Q ss_pred HHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 305 LRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 305 ~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
+++..+. .| |....+.++..+...|+.+++.++++...... ..+...+..+..++...|+.++|...+++..+..+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 8887764 34 45567777888888888888777777776653 22334566778888888888888888888777554
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
. |+.+...+.+++...|+.++|.++..+..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T--HHHHHHHHHHHT----------------
T ss_pred c-ccccccccccccccccccccccccccccc
Confidence 4 77778888888888888888888876654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-11 Score=108.01 Aligned_cols=371 Identities=13% Similarity=0.139 Sum_probs=261.7
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchH---HH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPY---NV 216 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ 216 (535)
..|.+.+-...-.+-+.|....|++.|-.... .-+..|.+-+...--.-+.+.+..+.... +.| ..| --
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~--~~P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~-~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN--RYPWFWSAWLELSELITDIEILSILVVGL-----PSD-MHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHh--cCCcchHHHHHHHHhhchHHHHHHHHhcC-----ccc-chHHHHHH
Confidence 34444433334445666777788887776655 23344544443332233333332222111 111 111 12
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC-CCHHHHHHHHHHHHhc
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN-PNWTTFSTMATMYIKM 295 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 295 (535)
+..++....+.+++++-.......|++-+...-+....+.-...|+++|+.+|+++.+..... -|..+|+.++ |.+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 345566667888899888889998876665555555556677889999999999999742211 2566887776 5554
Q ss_pred CCHHH---HHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHH
Q 009424 296 GQVEK---AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGME 372 (535)
Q Consensus 296 g~~~~---A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 372 (535)
.+..- |..+++ + -+--+.|...+.+-|+-.++.++|+..|++..+.++... ..|+.+..-|....+...|.
T Consensus 311 ~~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~-~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL-SAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh-HHHHHhhHHHHHhcccHHHH
Confidence 43322 333322 1 123455777788889999999999999999998665533 67889999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhc
Q 009424 373 KIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAE 452 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 452 (535)
+-++.+++..+. |-..|-.|.++|.-.+...-|+-.|++..+..+. |...|.+|...|.+.++.++|++.|..+.
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai--- 459 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAI--- 459 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHH---
Confidence 999999988766 8999999999999999999999999999986444 89999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCChh---hHHHHHHHhHhhhhccc-------ccCCC
Q 009424 453 GAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP----GYRKEK---DYMSLIGLTDEAVAENN-------KKNDE 518 (535)
Q Consensus 453 ~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~L~~~y~~~~~~~~-------~~~~i 518 (535)
..| ..+...+..+...+-+.++.++|.+.+++.++. |...+. ...-|..-+.+.+.+++ .-.+-
T Consensus 460 -~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 460 -LLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred -hcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 444 336688999999999999999999999888763 434332 23446666777777777 22332
Q ss_pred CCChhHHHHHHhhhh
Q 009424 519 DSDEDSEMLLSQLQF 533 (535)
Q Consensus 519 ~~~~~~~~l~~~l~~ 533 (535)
..-+|.+++++++..
T Consensus 538 ~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 538 TECEEAKALLREIRK 552 (559)
T ss_pred chHHHHHHHHHHHHH
Confidence 233478888888754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-11 Score=120.52 Aligned_cols=289 Identities=10% Similarity=0.035 Sum_probs=202.5
Q ss_pred HhhCCHhhHHHHHhhCCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcc--hHHHHHHHHHhcCChhHH
Q 009424 154 AKVHGVASAEDFFLSLPDTLKDR-RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSL--PYNVMMTLYMKIKEYDEV 230 (535)
Q Consensus 154 ~~~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a 230 (535)
...|+++.|++.+.+..+..|+. ..+-.....+.+.|+.+.|.+.+.+..+.. |+.. ..-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 34688888888888777654543 334444566777899999999998876643 4443 333346777888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS-TMATM---YIKMGQVEKAEESLR 306 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~---~~~~g~~~~A~~~~~ 306 (535)
.+.++.+.+.. +-+..++..+...+...|+++.|.+.+..+.+.. . .+...+. .-... +...+..+.+.+.+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999988875 3366678888888999999999999999888642 2 2332221 11111 122233333334444
Q ss_pred HHHhcccC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH--HhcCCHhhHHHHHHHHHhc
Q 009424 307 RVESRITG---RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL--ARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 307 ~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~ 381 (535)
.+.+..+. .+...+..+...+...|+.++|.+++++..+..+......+. ++..+ ...++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44433221 367788888899999999999999999988865554322211 22222 3357788888888887766
Q ss_pred CCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 382 KSSYDP--RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 382 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544 55 67778999999999999999999965444457888888899999999999999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-10 Score=116.35 Aligned_cols=351 Identities=13% Similarity=0.091 Sum_probs=264.5
Q ss_pred HHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEV 230 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 230 (535)
.+++ |++++|.+++.++... +.+...|-+|-..|-+.|+.+++...+-..-..+ +-|..-|..+-....+.|.+++|
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3444 9999999999998876 6678899999999999999999998886665543 44678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW-TTF----STMATMYIKMGQVEKAEESL 305 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~ 305 (535)
.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.... +|.. .-+ -..+..|...++.+.|.+.+
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999985 4565555566778999999999999999998632 2222 222 23456677788889999999
Q ss_pred HHHHhc-ccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----------------------CCchhhH----HHH
Q 009424 306 RRVESR-ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP----------------------GVTNLGY----HAM 358 (535)
Q Consensus 306 ~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------------------~~~~~~~----~~l 358 (535)
+..... +-..+...++.++..|.+...++.|......+..... .++...| .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887652 2334566788999999999999999998888876111 1111111 123
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVK--SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.-++.+....+....+.....+.. +.-+...|.-+.++|...|++.+|..+|..+......-+...|--+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 334455566666666666666666 344577888999999999999999999999998655557889999999999999
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCC--------CCChh-hHHHHHHHhH
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPG--------YRKEK-DYMSLIGLTD 506 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--------~~~~~-~~~~L~~~y~ 506 (535)
..++|++.|.... ...|+.. .-.+|-..+...|+.|+|.+.++.+..-+ ..|.. ......+.|.
T Consensus 464 e~e~A~e~y~kvl------~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 464 EYEEAIEFYEKVL------ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred hHHHHHHHHHHHH------hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999 5667654 44456667889999999999999976322 22333 3345556666
Q ss_pred hhhhccc
Q 009424 507 EAVAENN 513 (535)
Q Consensus 507 ~~~~~~~ 513 (535)
..|+.++
T Consensus 538 ~~gk~E~ 544 (895)
T KOG2076|consen 538 QVGKREE 544 (895)
T ss_pred HhhhHHH
Confidence 6666555
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=118.87 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=172.6
Q ss_pred ChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCH-hHH
Q 009424 121 RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMR-GNA 195 (535)
Q Consensus 121 ~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~-~~A 195 (535)
..++|...|..+..+. .....+...+..+|...+++++|+++|+.+.+. ..+...|.+.+..+-+.=.. --|
T Consensus 334 ~~~~A~~~~~klp~h~---~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH---YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 4566777777744443 344477777777777777777777777776654 33566777766554332111 112
Q ss_pred HHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 196 ELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 196 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
.++.+.++ -...+|-++..+|.-.++.+.|++.|++..+.+ +-...+|+.+-.=+....++|.|...|+....-
T Consensus 411 q~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 411 QDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22222222 235777777777777777777777777776653 125666766666666777777777777776631
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 276 KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 276 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
. +.+-..|--|...|.|.++++.|+-.|+...+-++ .+.+....+...+-+.|+.++|++++++.....+.- ...-
T Consensus 485 ~--~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn-~l~~ 560 (638)
T KOG1126|consen 485 D--PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN-PLCK 560 (638)
T ss_pred C--chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC-chhH
Confidence 1 22233444566667777777777777777665332 244555555666667777777777777766644432 2223
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 419 (535)
.-....+...++.++|.+.++++++.-++ +..++..+...|.+.|+.+.|..-|.-+.+.+++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 33444555666677777777766554332 4556666666677777777776666666654443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=106.08 Aligned_cols=204 Identities=9% Similarity=0.116 Sum_probs=161.2
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTM---ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKE 334 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (535)
..|++++|.+.+.+.... |...-.+| .-.+-..|++++|++.|-.+..- +..+.....-+.+.|-...+..
T Consensus 502 ~ngd~dka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred ecCcHHHHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 468999999999998842 33333332 23467889999999999887432 2345566777888899999999
Q ss_pred HHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 335 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+|++++.+....- ..|....+-+...|-+.|+-.+|.+.+-.--+ -++-+..+..-|..-|....-+++|+.+|++..
T Consensus 576 qaie~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 576 QAIELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999998877642 22446788999999999999999998876433 234478888888888999999999999999876
Q ss_pred HcCCCCCHhHHHHHHHHHH-ccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 415 EEGGKPNSTSWETLAEGHI-RERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESD 476 (535)
Q Consensus 415 ~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~ 476 (535)
- +.|+..-|..||..|. +.|++.+|+++|++.. ..++-|...+..|++.|...|.
T Consensus 654 l--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h-----rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 L--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH-----RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred h--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH-----HhCccchHHHHHHHHHhccccc
Confidence 4 6899999999997765 6899999999999998 3567788889999999988875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-11 Score=118.67 Aligned_cols=287 Identities=12% Similarity=0.074 Sum_probs=226.7
Q ss_pred CCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHh-hHH
Q 009424 85 NPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVA-SAE 163 (535)
Q Consensus 85 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~-~A~ 163 (535)
+.. +|+.+|..... .+.-+.+....+-++|...+++++|..+|+.+.+..+-.--+..+|.+.+.-+-+.-.+. -|.
T Consensus 334 ~~~-~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCR-EALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHH-HHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 344 78888888443 344556888889999999999999999999999876434445667777765554332222 245
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009424 164 DFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIR 243 (535)
Q Consensus 164 ~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 243 (535)
.+.+..+. .+.+|-++-..|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+..
T Consensus 412 ~Li~~~~~---sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 412 DLIDTDPN---SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHhhCCC---CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 55555554 78999999999999999999999999998864 226789999999999999999999999887654
Q ss_pred CCHHHHHH---HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchH
Q 009424 244 LDVYSYNI---WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY 320 (535)
Q Consensus 244 pd~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 320 (535)
|...|++ +...|.+.++++.|.-.|+...+-. +.+.+....+...+-+.|+.|+|+++|++...... .|+..-
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~ 560 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK 560 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH
Confidence 5555555 5667999999999999999998643 55667777888889999999999999999876433 355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
-..+..+...++.++|+..++++++. .|+. ..+..+...|-+.|+.+.|+.-|..+.+..++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 56677788899999999999999994 5554 6788899999999999999999999887665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-10 Score=101.62 Aligned_cols=299 Identities=12% Similarity=0.056 Sum_probs=208.7
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCCHhHH
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD---VYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd---~~~~~~ll~~~~~~g~~~~a 265 (535)
+++.++|.++|-+|.+.. +-+..+--+|.+.|-+.|..+.|+++++.+.+..--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467889999999998853 22344556677888889999999999988877521111 12233455667888999999
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc----hHHHHHHHHHhcCCHHHHHHHHH
Q 009424 266 EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV----PYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
+.+|..+.... ..-......|+..|-...++++|.++-+++.+.+..+..+ .|.-+...+....+.+.|+.++.
T Consensus 127 E~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999888533 2334567788889999999999999999887766555433 35556666667788899999999
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN 421 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 421 (535)
+..+..++.-. .--.+.+.....|+++.|.+.++.+.+.++..-+.+...|..+|...|+.++....+.++.+... +
T Consensus 205 kAlqa~~~cvR-Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 205 KALQADKKCVR-ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHhhCcccee-hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 88875544322 22355677788899999999999998887776778888899999999999999999988887433 3
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHhcCCCCChhhH
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEE---SDMGSKEAFVALLRQPGYRKEKDY 498 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~~~~~ 498 (535)
...-..+...-....-.+.|..++.+-. .-+|+...+..++..-... |...+-...++.|+...+...+.|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql------~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQL------RRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHH------hhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 3333344443334444566666555555 3478888888888865433 345555566666665544444444
Q ss_pred H
Q 009424 499 M 499 (535)
Q Consensus 499 ~ 499 (535)
.
T Consensus 356 R 356 (389)
T COG2956 356 R 356 (389)
T ss_pred e
Confidence 3
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-10 Score=101.32 Aligned_cols=286 Identities=13% Similarity=0.044 Sum_probs=213.8
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHH
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGV 268 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~ 268 (535)
.|++..|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888877776333 4445555566777888888888888887764355666666777778888888888888
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-------chHHHHHHHHHhcCCHHHHHHHHH
Q 009424 269 FELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-------VPYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
.+++.+.. +.+..+......+|.+.|++.....++..|.+.|.-.|. .+|+.+++-....+..+.-...|+
T Consensus 176 v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88877543 566778888888899999999999999988888766553 367777777777777777777777
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN 421 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 421 (535)
..... .+-+...-.+++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++.+.=++..+.-...... +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 76553 2223344567888888999999999999998888776551 1122334556666666666655543222 4
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
+..+.+|...|.+++.|.+|.+.|+... ...|+..+|..+-.++...|+.++|.++.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl------~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAAL------KLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH------hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5778889999999999999999999888 6789999999999999999999999998887663
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-10 Score=101.62 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=204.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN--WTTFSTMATMYIKMGQVEK 300 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 300 (535)
-+.+.++|.++|-+|.+.+ +-...+--+|-+.|.+.|..|.|+.+++.+.++.+..-+ ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3568899999999999863 224445567888899999999999999999975433222 2234567778999999999
Q ss_pred HHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch----hhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN----LGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 301 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
|+.+|..+.+.+. .-......++..|-+..+|++|+++-++....+..+.. .-|.-+...+....+++.|+.+++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999976432 23456778899999999999999999999887766654 245566667777789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCC
Q 009424 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKS 456 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g 456 (535)
+..+...+ .+..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|.+.|+.++...++..+. +.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~----~~- 278 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM----ET- 278 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----Hc-
Confidence 99887655 5666667888999999999999999999987555456678889999999999999999999998 33
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh-hHHHHHHHh
Q 009424 457 WRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK-DYMSLIGLT 505 (535)
Q Consensus 457 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~L~~~y 505 (535)
.+....-..+...-....-.+.|..++.+-++.. |+. .+.-|++.-
T Consensus 279 -~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~ 325 (389)
T COG2956 279 -NTGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYH 325 (389)
T ss_pred -cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhh
Confidence 3333333444443333334566666666655544 444 555666665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-13 Score=88.45 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH
Q 009424 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222 (535)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 222 (535)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-08 Score=94.04 Aligned_cols=378 Identities=10% Similarity=0.060 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCC-HHHHHHHHHH
Q 009424 107 WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKD-RRVYGALLNA 185 (535)
Q Consensus 107 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~ 185 (535)
..+-.-.+.-...+++..|..+|+..+... ..+...+..-+.+=.++..+..|+.+|++....-|- ...|-..+.+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd---~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD---YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333333444456778889999999998765 345666777788889999999999999998776343 3567777777
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
=-..|++..|+++|++-.+- .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|--...-=-+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 77889999999999988764 799999999999999999999999999998865 58999998888888899999999
Q ss_pred HHHHHHhHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCH---HHHHHH-
Q 009424 266 EGVFELMKVDKAV-NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKK---EEVYRV- 339 (535)
Q Consensus 266 ~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~---~~a~~~- 339 (535)
+++|+......|- .-+...+.+....=.++..++.|.-+|+-..+.-++-. ...|.....---+-|+. ++++--
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999998863221 11223344444444567788899989888776533211 23444444444444553 333322
Q ss_pred ----HHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC-HHHHHHHHH--------HHHHcCChhHH
Q 009424 340 ----WNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD-PRIANLMMS--------WYVKEGNFDKA 406 (535)
Q Consensus 340 ----~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~--------~~~~~g~~~~A 406 (535)
|+.+...+ ..|-.+|--.++.-...|+.+...++|+.++..-++.. ...|...|- .-....+++.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 22222221 12335666677777777888888888888775432211 112222221 11235677778
Q ss_pred HHHHHHHHHcCCCCC-HhH----HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 009424 407 EAFFNSIIEEGGKPN-STS----WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
.++|+...+ +.|. ..| |-.....-.++.+...|.+++..++ |..|-..+|...|..=.+.+.++..+
T Consensus 386 r~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI------G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 386 RQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI------GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh------ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 888877776 3343 233 3333444456777888888888887 77888888888887777778888888
Q ss_pred HHHHHHhcCCCCChhhHHH
Q 009424 482 AFVALLRQPGYRKEKDYMS 500 (535)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~ 500 (535)
.++++.++-+|.+-.+|..
T Consensus 458 kLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred HHHHHHHhcChHhhHHHHH
Confidence 8888888877776554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-09 Score=97.37 Aligned_cols=283 Identities=10% Similarity=0.072 Sum_probs=146.8
Q ss_pred ccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhHHH
Q 009424 119 FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAE 196 (535)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 196 (535)
.|+|..|.++...-.+.+ +.....+.....+--..|+.+.|-+++.+.-+. .++..+.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 366666666666655554 333334444445555666666666666665554 334455555556666666666666
Q ss_pred HHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcCCCHhHHHHHH
Q 009424 197 LLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV-------YSYNIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 197 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~-------~~~~~ll~~~~~~g~~~~a~~~~ 269 (535)
.-.+++.+.+ +-+.........+|.+.|++.+...+...|.+.|+-.|. .+|..+++-+...+..+.-...+
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 6666665554 223455566666666666666666666666666644332 34555555555555555544455
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (535)
+..... .+.++..-.+++.-+.++|+.++|.++.++..+++..|... ..-.+.+-++.+.-++..+.-....+.
T Consensus 253 ~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 253 KNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 554432 23344455555556666666666666666655554444311 112233444444444444433332222
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
-+ ..+.++...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+++++..
T Consensus 327 ~p-~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DP-LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred Ch-hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11 3344555555555555555555554332 23445555555555555555555555554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-13 Score=87.07 Aligned_cols=50 Identities=30% Similarity=0.596 Sum_probs=46.1
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS 258 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 258 (535)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-09 Score=92.44 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhCCCCchh-hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 333 KEEVYRVWNLYRSVFPGVTNL-GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
..-|.+.|...-..+..-|.. ---++.+.+.-..++++....++.+..--..-|...+ .+..+++..|.+.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 444555555444443333331 2234555555556677777777766543333233333 47788999999999999998
Q ss_pred HHHHcCCCCCHhHHHH-HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH-HHHHhcCChhhHHHHHHHHhc
Q 009424 412 SIIEEGGKPNSTSWET-LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF-KACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 412 ~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~ 489 (535)
++....++ |..+|-+ +.+.|.+++.++.|++++-++. ...+..++..+| .-|.+.+.+--|-+.|+.+..
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~-------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN-------TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 87765555 6666655 4578889999999998887766 223444444444 579999999999999999998
Q ss_pred CCCCCh
Q 009424 490 PGYRKE 495 (535)
Q Consensus 490 ~~~~~~ 495 (535)
.+|.|.
T Consensus 490 lDP~pE 495 (557)
T KOG3785|consen 490 LDPTPE 495 (557)
T ss_pred cCCCcc
Confidence 888874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=119.95 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
.|++.+|.+++++-.-.|+.+.|..++.+|++.|+..+..-|..++-+ .+....+..+++.|. ..|+.|+..|
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq----e~gv~p~seT 273 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ----EKGVQPGSET 273 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH----HhcCCCCcch
Confidence 355566666666666666666666666666666655555555555554 445555555555555 5566666666
Q ss_pred HHHHHHHHHh
Q 009424 464 VINFFKACEE 473 (535)
Q Consensus 464 ~~~ll~a~~~ 473 (535)
+.-.+..|..
T Consensus 274 ~adyvip~l~ 283 (1088)
T KOG4318|consen 274 QADYVIPQLS 283 (1088)
T ss_pred hHHHHHhhhc
Confidence 5555555444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-10 Score=110.96 Aligned_cols=254 Identities=10% Similarity=0.030 Sum_probs=174.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCC
Q 009424 92 SVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD 171 (535)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 171 (535)
.++-.|...|+.|+..||.++|..|+..|+++.|- +|..|.-.. .+....+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccccccccCCC-------C
Confidence 56778889999999999999999999999999998 999998887 8888999999999999999888776 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHH-HHH-------CCCCcCc--------------chHHHHHHHHHhcCChhH
Q 009424 172 TLKDRRVYGALLNAYVRARMRGNAELLIDK-MRD-------KGYAVHS--------------LPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 172 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~--------------~~~~~li~~~~~~g~~~~ 229 (535)
|...+|+.|..+|.+.||+.. .+..++ |.. .|+.--. ..-...+.-..-.|-++.
T Consensus 81 --p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 --PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 788999999999999999765 222222 221 1211000 001122333344455555
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 230 VESMVSEMKEKG-IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 230 a~~~~~~m~~~g-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (535)
+++++..+.... ..|-.+ +++-+..... -.+++......-.+ .|+..++.+++..-.-+|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 555554443321 111111 2444433222 23333333332112 578888888888888888888888888888
Q ss_pred HhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH
Q 009424 309 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI 368 (535)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 368 (535)
++.|+..+..-|-.++-+ .++...+..+++-|...|+.|+..|+.--+-.+..+|..
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 888887777655555544 777788888888888888888888887777777776553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-09 Score=97.60 Aligned_cols=385 Identities=13% Similarity=0.032 Sum_probs=178.2
Q ss_pred HHHHHhccCCCCccHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHH
Q 009424 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLT-KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIA 154 (535)
Q Consensus 76 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~ 154 (535)
.-+-|-++|.++ +|+..|.+... ..|| +.-|.-.-.+|...|+|++..+--...++.. +.-+..+.....++-
T Consensus 121 ~GN~~f~~kkY~-eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 121 KGNKFFRNKKYD-EAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---PDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhcccHH-HHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---cHHHHHHHHHHHHHH
Confidence 334566788888 88888888877 6777 6666677777788888888887776666654 222344445555666
Q ss_pred hhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH---------HHHCC--CCcCcchHHHHHHHHHh
Q 009424 155 KVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDK---------MRDKG--YAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 155 ~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~~~~~li~~~~~ 223 (535)
..|++.+|.. -+|-.+++.++....-.--+.+++.+ |.+.+ +-|+....++....+..
T Consensus 195 ~lg~~~eal~-----------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 195 QLGKFDEALF-----------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred hhccHHHHHH-----------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 6677776632 23334444444333333333333322 11111 12222222222211110
Q ss_pred c--------C-----ChhHHHHHHH------------HHHHcC----CCCCHH---------HHHHHHH--HHhcCCCHh
Q 009424 224 I--------K-----EYDEVESMVS------------EMKEKG----IRLDVY---------SYNIWLS--SCGSQGSTE 263 (535)
Q Consensus 224 ~--------g-----~~~~a~~~~~------------~m~~~g----~~pd~~---------~~~~ll~--~~~~~g~~~ 263 (535)
. + ...++++.+. .+.+.. ..++.. .-..++. -+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0 0 0111111111 111000 000000 0111111 122345555
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
.|..-|+..++-. +.+...|--+..+|....+.++.+..|+...+-.+ -|..+|..-.+.+.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555321 11222244444455555556666666655544322 13444544445555555555665555555
Q ss_pred HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---
Q 009424 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP--- 420 (535)
Q Consensus 344 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--- 420 (535)
....+. +...|..+.-+..+.+.+++++..|++.++. ++-.+.+|+.....+...++++.|.+.|+...+....-
T Consensus 421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 553222 1234444444444555566666666555443 22245555555555666666666666665555421111
Q ss_pred --CHhHHHHH-HHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 421 --NSTSWETL-AEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 421 --~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
+...+..= +-.+.-.+++..|.+++.++. .+.|- ...|.++...-...|+.++|.++|++..
T Consensus 499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~------e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAI------ELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccchhhhhhhHhhhchhhhHHHHHHHHHHHH------ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111000 000111245555566665555 23332 2345555555555556666666665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-08 Score=95.70 Aligned_cols=412 Identities=12% Similarity=0.073 Sum_probs=281.6
Q ss_pred HHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhH----------
Q 009424 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASD---------- 145 (535)
Q Consensus 76 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---------- 145 (535)
+..++.-.|... .|..+...-.- ..-|..+.......+.+.++|++|..+++.......++.-+...
T Consensus 55 ~aq~l~~~~~y~-ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~ 131 (611)
T KOG1173|consen 55 LAQVLYLGRQYE-RAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA 131 (611)
T ss_pred HHHHHHhhhHHH-HHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence 555566666666 66655554322 34477777788888899999999999988321111001111111
Q ss_pred -----HHH-------HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHc---------------------CCH
Q 009424 146 -----AAI-------QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRA---------------------RMR 192 (535)
Q Consensus 146 -----~~~-------li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~---------------------g~~ 192 (535)
.+. -...|......++|+..|.+... .|+..+.++...-... .+.
T Consensus 132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~ 209 (611)
T KOG1173|consen 132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDV 209 (611)
T ss_pred cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHH
Confidence 011 12234555667778877777655 4555554443322111 111
Q ss_pred hHHHHHHHHH----HHC------------CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 193 GNAELLIDKM----RDK------------GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 193 ~~A~~~~~~m----~~~------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
+.-..+|+-- .+. +..-+......-.+-|...+++.+..++++...+.. ++....+..-|.++
T Consensus 210 e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l 288 (611)
T KOG1173|consen 210 ERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACL 288 (611)
T ss_pred HHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHH
Confidence 1122222211 000 111223333444556677889999999999998874 56667777777888
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 335 (535)
...|+..+-..+=.++.+. .+....+|-++.-.|...|+..+|++.|.+... +.|. ...|-.+...|+-.|..++
T Consensus 289 ~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHH
Confidence 9999988877777788864 477788999999999999999999999998743 3332 4479999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 336 VYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 336 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
|+..+...-+..+.... -+--+.--|.+.++++.|.++|.+.....+. |+.+.+-+.-.....+.+.+|..+|+...+
T Consensus 365 AmaaY~tAarl~~G~hl-P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHL-PSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHhccCCcc-hHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 99999988775433221 1233445678899999999999998765544 888999988888889999999999988763
Q ss_pred --cCCCC----CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 416 --EGGKP----NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 416 --~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
+.+.+ -..+++.|..+|.+.+.+++|+..+++... . .+-|..++.++.-.+...|+++.|...|.+.+-
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~----l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL----L-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH----c-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 11111 345678888999999999999999999992 2 234677888888889999999999999999887
Q ss_pred CCCCChhhHHHHHHH
Q 009424 490 PGYRKEKDYMSLIGL 504 (535)
Q Consensus 490 ~~~~~~~~~~~L~~~ 504 (535)
..+.+..+-..|-.+
T Consensus 518 l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 518 LKPDNIFISELLKLA 532 (611)
T ss_pred cCCccHHHHHHHHHH
Confidence 776654444444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-09 Score=97.63 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS 255 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~ 255 (535)
...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4456666666667777777777776665542 2234555666666666666666666666666543 2234455555556
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHH
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (535)
+...|++++|.+.++..............+..+...|...|++++|...|++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666654211122233444455555555555555555555544221 122344444445555555555
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 336 VYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 336 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
|...+++.....+ .+...+..+...+...|+.+.|..+.+.
T Consensus 188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555554444311 1122233333444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=97.38 Aligned_cols=198 Identities=18% Similarity=0.177 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
.+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++.....+. +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 34444444444444444444444443321 112233444444444444455554444444443222 1123344444444
Q ss_pred hcCCHhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSS-YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
..|++++|.+.++.+.+.... .....+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555554432211 12234444455555555555555555555543222 3444555555555555566665
Q ss_pred HHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 443 SCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 443 ~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
+.++++. .. ...+...+..+...+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQ----QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHH----Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555 22 122334444445555555555555555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-09 Score=106.74 Aligned_cols=267 Identities=8% Similarity=-0.030 Sum_probs=176.1
Q ss_pred CcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---------cCCCHhHHHHHHHHhHhC
Q 009424 210 HSLPYNVMMTLYMK-----IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG---------SQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 210 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~ 275 (535)
+...|...+.+-.. .+.+++|++.|++..+... -+...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34455566655322 1245788888888887632 23444544444333 234578899999888863
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhh
Q 009424 276 KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354 (535)
Q Consensus 276 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 354 (535)
. +.+...+..+...+...|++++|...|++..+.. |+ ...|..+...+...|++++|+..+++..+..+.....
T Consensus 334 d--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~- 408 (553)
T PRK12370 334 D--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA- 408 (553)
T ss_pred C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-
Confidence 2 5567788888888888999999999999887753 43 4567778888889999999999999988866654332
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+..++..+...|++++|...++++.+....-++..+..+..+|...|+.++|...++++...... +...++.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 23344456667889999999888776543325566777788888899999999998887654221 34445566666677
Q ss_pred cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 435 ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.| ++|...++.+.+ .....|...-+..++ +.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~---~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLE---SEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHH---HhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 76 477777777663 223344434443333 3444555555555 7766654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-09 Score=105.59 Aligned_cols=263 Identities=11% Similarity=-0.006 Sum_probs=182.9
Q ss_pred CCHHHHHHHHHHHHH-----cCCHhHHHHHHHHHHHCCCCcC-cchHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 009424 174 KDRRVYGALLNAYVR-----ARMRGNAELLIDKMRDKGYAVH-SLPYNVMMTLYMK---------IKEYDEVESMVSEMK 238 (535)
Q Consensus 174 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 238 (535)
.+...|...+.+-.. .++.++|..+|++..+.. |+ ...|..+..++.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455666666665322 134678999999888763 43 4455555444432 244789999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc
Q 009424 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV 318 (535)
Q Consensus 239 ~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 318 (535)
+.+ +-+...+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+.. |+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~ 406 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRA 406 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCh
Confidence 875 3467778888888889999999999999998642 4556788888999999999999999999997753 4432
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 319 -PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 319 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
.+..+...+...|++++|+..+++.....+.-+...+..+..++...|+.++|...+.++...... +....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHH
Confidence 333444556678999999999999876532223345667778888999999999999887554322 444556666677
Q ss_pred HHcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 398 VKEGNFDKAEAFFNSIIEE-GGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+..| ++|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++.
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 7777 5888888877652 222333333 44445566776666655 7777
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-07 Score=88.14 Aligned_cols=403 Identities=12% Similarity=0.123 Sum_probs=257.7
Q ss_pred cchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcC----CCcccCHhHH
Q 009424 71 IKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRG----ERFRLSASDA 146 (535)
Q Consensus 71 ~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~ 146 (535)
-.|...|......|-|+ -++.+|++.++ +.|.. -.--|.-++..+++++|.+.+..++... ...+.+-..+
T Consensus 139 rIW~lyl~Fv~~~~lPe-ts~rvyrRYLk--~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPE-TSIRVYRRYLK--VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChH-HHHHHHHHHHh--cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 36888888888888998 89999999876 44443 5667888899999999999998887543 1123444555
Q ss_pred HHHHHHHHhhCCH---hhHHHHHhhCCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHH
Q 009424 147 AIQLDLIAKVHGV---ASAEDFFLSLPDTLKDR--RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLY 221 (535)
Q Consensus 147 ~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 221 (535)
.-+.+..++.-+. -....++..+....+|. ..|++|.+-|.+.|.++.|.++|++-...- .++.-|+.+.++|
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 6666665554332 23445666666655554 589999999999999999999999877642 2444556666655
Q ss_pred HhcC----------------------ChhHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHhcCCCHhHHHHH
Q 009424 222 MKIK----------------------EYDEVESMVSEMKEKGI-----------RLDVYSYNIWLSSCGSQGSTEKMEGV 268 (535)
Q Consensus 222 ~~~g----------------------~~~~a~~~~~~m~~~g~-----------~pd~~~~~~ll~~~~~~g~~~~a~~~ 268 (535)
++-. +++-.+.-|+.+...+. +-++.+|..-+. ...|+..+-...
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence 5321 12222333443333221 112333333222 234566777777
Q ss_pred HHHhHhCCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC---cchHHHHHHHHHhcCCHHHHHHH
Q 009424 269 FELMKVDKAVNPN------WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD---RVPYHYLLSLYGSVGKKEEVYRV 339 (535)
Q Consensus 269 ~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~ 339 (535)
+.+..+. +.|- ...|..+...|-..|+++.|+.+|++..+-..+.- ..+|......-.++.+++.|+.+
T Consensus 370 yteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 370 YTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8777752 3332 23688889999999999999999998865432211 23566666677778889999998
Q ss_pred HHHHHhhCCC----------Cc-------hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 009424 340 WNLYRSVFPG----------VT-------NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN 402 (535)
Q Consensus 340 ~~~m~~~~~~----------~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 402 (535)
.+.....-.. |. ...|...++.--..|-++..+.+++.+++..+. ++.+.-.....+-.+.-
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKY 526 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHH
Confidence 8876542111 11 124566666667778888999999998877665 44333333333445666
Q ss_pred hhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHc---cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHH--HHhcCC
Q 009424 403 FDKAEAFFNSIIEEGGKPN-STSWETLAEGHIR---ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKA--CEEESD 476 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a--~~~~g~ 476 (535)
++++.+++++-...-.-|+ ...|+..+.-+.+ .-..+.|..+|+++. + |.+|...-+..|+-| =-+.|.
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL----~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL----D-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----h-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 7888888876555323344 3457776665553 235788899999988 4 666655433333322 234577
Q ss_pred hhhHHHHHHHHhcC
Q 009424 477 MGSKEAFVALLRQP 490 (535)
Q Consensus 477 ~~~a~~~~~~~~~~ 490 (535)
...|..++++....
T Consensus 602 ar~amsiyerat~~ 615 (835)
T KOG2047|consen 602 ARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888886543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-07 Score=93.28 Aligned_cols=289 Identities=14% Similarity=0.149 Sum_probs=162.0
Q ss_pred HHHHhhCCHhhHHHHHhhCCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH-h-----
Q 009424 151 DLIAKVHGVASAEDFFLSLPDTLKDRR-VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM-K----- 223 (535)
Q Consensus 151 ~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~----- 223 (535)
..+...|++++|.+.++.-.....|.. ........+.+.|+.++|..+|..+.+++ |+-..|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344555666666666655444434443 33455566667777777777777777765 44444433333332 1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHh-HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009424 224 IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE-KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302 (535)
Q Consensus 224 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (535)
..+.+...++|+++...- |......-+.-.+..-..+. .+..++..+.+ .|+++ +|+.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-KGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHh-cCCch---HHHHHHHHHcChhHHHHHH
Confidence 124556666666665542 22222222211111111222 23334444443 24432 5555555555544444444
Q ss_pred HHHHHHHhc----c----------cCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 303 ESLRRVESR----I----------TGRDRV--PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 303 ~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
+++...... + -.|... ++.-+.+.|...|++++|+++.++.....|.. ...|..-...+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCC
Confidence 455444322 0 112332 33445666777888888888888777754332 245667777777888
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh------HH--HHHHHHHHccccH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNST------SW--ETLAEGHIRERRI 438 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~ 438 (535)
++++|.+.++........ |-.+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 888888888887766655 66677777777788888888888887776654333211 12 3345677788888
Q ss_pred HHHHHHHHHhH
Q 009424 439 LEALSCLKGAF 449 (535)
Q Consensus 439 ~~A~~~~~~m~ 449 (535)
..|++-|....
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777666655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-08 Score=93.06 Aligned_cols=285 Identities=11% Similarity=0.096 Sum_probs=225.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
++.....-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.+|++.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 45555566667788899999999999998874 6677778888889999999999888888888773 456788988888
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (535)
-|...|..++|++.|.+... +.|. ...|-.+...|+-.|..|.|...+...-+--..-.. .+--+---|.+.+..
T Consensus 321 YYl~i~k~seARry~SKat~---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHHHhccH
Confidence 88888999999999998763 2333 347889999999999999999988877553221111 122233457788999
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC--CC----CCHHHHHHHHHHHHHcCChhHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK--SS----YDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
+.|.++|.+.....|. |....+-+.-.....+.+.+|..+|+..+..- .. .-..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998885444 34566666666677889999999998776211 11 13456788999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
..|++......+ |..++.++.-.|...|+++.|++.|.+.. .+.||..+...++..+..
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL------~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL------ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH------hcCCccHHHHHHHHHHHH
Confidence 999999887555 89999999999999999999999999999 899999988888875544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-09 Score=95.56 Aligned_cols=228 Identities=13% Similarity=0.045 Sum_probs=141.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhc
Q 009424 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS-YNIWLSSCGS 258 (535)
Q Consensus 180 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~-~~~ll~~~~~ 258 (535)
+.|-.+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+..+...|+.+|.+-++. .|-.+| ..-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45556677777777777777665554 345566666777777777777777777666554 233333 3344555666
Q ss_pred CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHH
Q 009424 259 QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 259 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 338 (535)
.++.++|.++++...+.. +.++.....+...|.-.++.+.|+++++++.+.|+. +...|+.+--+|.-.++++-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 666777777777666532 334455555556666667777777777777666653 55566666666666666777776
Q ss_pred HHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 339 VWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 339 ~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|.+....-..|+. ..|-.+-......|++..|.+.|+..+..+.. +...+|.|.-.-.+.|+++.|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666554333333 34555555566667777777777666655433 455666666666667777777777666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-09 Score=93.22 Aligned_cols=228 Identities=14% Similarity=0.011 Sum_probs=129.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh
Q 009424 215 NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294 (535)
Q Consensus 215 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 294 (535)
+.+..+|.+.|.+.+|.+.|+.-++. .|-+.||..|-+.|.+..+.+.|..++.+-... ++-|+....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45566666666666666666666555 345555666666666666666666666666532 34444444445555556
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHH
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
.++.++|.++++...+.. ..++.....+..+|.-.++++-|+..|+++.+.|...+ ..|+.+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp-eLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP-ELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh-HHHhhHHHHHHhhcchhhhHHH
Confidence 666666666666655431 12344444455555556666666666666666555433 3455555555566666666666
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 375 FEEWLSVKSSYD--PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 375 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|.+....--.|+ ..+|-.+-......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 655554333232 234444555555556666666666655544333 45555555555556666666666666555
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-06 Score=81.40 Aligned_cols=406 Identities=9% Similarity=0.076 Sum_probs=264.0
Q ss_pred cchHHHHHHHhccCCCCccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHH
Q 009424 71 IKWNAIFRKLSLMDNPQLGSASVLNDWEKG-GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149 (535)
Q Consensus 71 ~~~n~li~~~~~~g~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~l 149 (535)
..|-.-+..+...|+.- .....|++.++. .+.-....|...++...+.+-.+-+..+++.-++.. +...+--
T Consensus 103 RIwl~Ylq~l~~Q~~iT-~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~------P~~~eey 175 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLIT-RTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA------PEAREEY 175 (835)
T ss_pred HHHHHHHHHHHhcchHH-HHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC------HHHHHHH
Confidence 34656666666777777 777777776554 333444567778888888888889999999887754 4446777
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCC--------CCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHCCCCcC--cchHHH
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDT--------LKDRRVYGALLNAYVRARMRGN---AELLIDKMRDKGYAVH--SLPYNV 216 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~~~ 216 (535)
|..+++.+++++|-+.+..+... +.+-..|+-+-+..+++-+.-. ...+++.+..+ -+| ...|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 88899999999999999888764 2234567777777666544332 33344444432 233 357999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----------------------CHhHHHHHHHHhHh
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG----------------------STEKMEGVFELMKV 274 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g----------------------~~~~a~~~~~~~~~ 274 (535)
|.+.|.+.|.+++|.++|.+..+.- ..+.-|+.+.++|+.-. +++....-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999887763 24444555555554321 23334444444443
Q ss_pred CCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC------cchHHHHHHHHHhcCCHHHHHH
Q 009424 275 DKAV----------NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD------RVPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 275 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~a~~ 338 (535)
...+ +.++..|..-+.. ..|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 2111 2233344433332 346677777777777643 3332 3368888999999999999999
Q ss_pred HHHHHHhhCCCC-ch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC----------C-------CHHHHHHHHHHHH
Q 009424 339 VWNLYRSVFPGV-TN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS----------Y-------DPRIANLMMSWYV 398 (535)
Q Consensus 339 ~~~~m~~~~~~~-~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~li~~~~ 398 (535)
+|++........ +. .+|..-...=.+..+++.|.++.+......-. | +..+|...++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 999986642221 11 34444455556677888898888876532111 1 3446777777777
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHh-c--
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEE-E-- 474 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~-~-- 474 (535)
..|-++....+++++.+..+. ++..-......+-.+.-++++.+++++-+ ..=-.|+. ..|+..+.-+.+ -
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI----~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGI----SLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCC----ccCCCccHHHHHHHHHHHHHHHhcC
Confidence 889999999999999986554 22222222333446677899999998877 22223444 367766664432 2
Q ss_pred CChhhHHHHHHHHhcCCCCChh
Q 009424 475 SDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
...+.|+.+|++.++ |.+|..
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHH
Confidence 368999999999999 444544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-07 Score=93.59 Aligned_cols=291 Identities=14% Similarity=0.087 Sum_probs=202.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhc----
Q 009424 184 NAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSY-NIWLSSCGS---- 258 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~-~~ll~~~~~---- 258 (535)
..+...|++++|++.+++-... +.............+.+.|+.++|..++..+.+.+ ||...| ..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4467889999999999875543 33334455667788999999999999999999986 455554 444444422
Q ss_pred -CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 259 -QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV-EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 259 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
..+.+.-.++++++... -|.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|......+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 23577888899988754 24333333332222222222 2445556666666653 4577777777766666666
Q ss_pred HHHHHHHHhh----C---------CCCch-h--hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 009424 337 YRVWNLYRSV----F---------PGVTN-L--GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE 400 (535)
Q Consensus 337 ~~~~~~m~~~----~---------~~~~~-~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 400 (535)
.+++...... + ..++. . ++.-+...|-..|++++|.++++..++..+. .+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 6666665432 1 12222 2 4456677788999999999999999887644 478889999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH------HH--HHHHHHHH
Q 009424 401 GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV------NV--INFFKACE 472 (535)
Q Consensus 401 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~------~~--~~ll~a~~ 472 (535)
|++++|.+.++.....+.. |...=+-.+..+.++|+.++|.+++.... +.+..|-.. .| .....+|.
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft----r~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFT----REDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhc----CCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987665 77777778888999999999999999888 555444322 22 23345888
Q ss_pred hcCChhhHHHHHHHHhc
Q 009424 473 EESDMGSKEAFVALLRQ 489 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~ 489 (535)
+.|++..|.+-|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99998888876665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-06 Score=84.16 Aligned_cols=421 Identities=13% Similarity=0.050 Sum_probs=271.0
Q ss_pred cCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HccChHHH-------------------HHHHHHHHh--cCCC
Q 009424 83 MDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELR---KFRRYKHA-------------------LEVYDWMNN--RGER 138 (535)
Q Consensus 83 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~~~~~~~~--~g~~ 138 (535)
.+++. +++.-+..-..++..-++.++..+.+.+. ..++.++. ....-.+.+ .+..
T Consensus 240 ~~~~~-~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 240 LSGPK-EAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCch-HHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 35555 66766666666666666666666555433 22333332 222111111 1223
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHH
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVM 217 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 217 (535)
+..+..++-.+.-+...+|+++.+-+.|++.... ......|+.+-..|...|.-..|+.+.++-....-.|+..+--.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 6678888889999999999999999999987643 345678999999999999999999999876554323444443333
Q ss_pred HH-HHH-hcCChhHHHHHHHHHHH--cCCC--CCHHHHHHHHHHHhcC----C-------CHhHHHHHHHHhHhCCCCCC
Q 009424 218 MT-LYM-KIKEYDEVESMVSEMKE--KGIR--LDVYSYNIWLSSCGSQ----G-------STEKMEGVFELMKVDKAVNP 280 (535)
Q Consensus 218 i~-~~~-~~g~~~~a~~~~~~m~~--~g~~--pd~~~~~~ll~~~~~~----g-------~~~~a~~~~~~~~~~~~~~~ 280 (535)
+. .|. +.+..++++++-.+... .+.. .....|..+--+|... . ...++.+.+++..+...-.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33 333 34567777776666555 1111 1223333333333321 1 23467778888876555566
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----c-----
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV----T----- 351 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~----- 351 (535)
++..|-++ -|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+......+.- +
T Consensus 479 ~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 65555554 478889999999999999887777788999999999999999999999988765533220 0
Q ss_pred ----------hhhHHHHHHHHHh---------cC--------------CHhhHHHHHHHH----H----hcC--------
Q 009424 352 ----------NLGYHAMISSLAR---------IG--------------DIEGMEKIFEEW----L----SVK-------- 382 (535)
Q Consensus 352 ----------~~~~~~ll~~~~~---------~g--------------~~~~a~~~~~~~----~----~~~-------- 382 (535)
..|...++...-. .| +..++.....++ . ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0122222221110 00 011111111100 0 011
Q ss_pred ---CCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc
Q 009424 383 ---SSYD------PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG 453 (535)
Q Consensus 383 ---~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (535)
..|+ ...|....+.+.+.+..++|...+.+.....+. ....|......+...|++++|.+.|..+.
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al---- 711 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVAL---- 711 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHH----
Confidence 0112 234556677888889999998888877764222 45556666677778899999999999998
Q ss_pred CCCCCCCHH-HHHHHHHHHHhcCChhhHHH--HHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 454 AKSWRPKPV-NVINFFKACEEESDMGSKEA--FVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 454 ~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
-+.|+.+ ..+++...+...|+...+.. ++..+.+.++.....|-.|..++-+.|+...
T Consensus 712 --~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 712 --ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred --hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 6778765 66777788889998777777 9999999999998899999999877666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-07 Score=83.89 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=174.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009424 220 LYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299 (535)
Q Consensus 220 ~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 299 (535)
.+.-.|+...|.+-|+...+....++. .|--+..+|....+-++..+.|+....-. +-|..+|..-..++.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHH
Confidence 344568889999999999887654443 26666677999999999999999998533 446668888888888899999
Q ss_pred HHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 300 KAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 300 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
+|..=|++.... .| +...|.-+--+..+.++++++...|++.+...|... ..|+.....+...++++.|.+.|+..
T Consensus 412 ~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~-Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP-EVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999998763 33 344666666666778899999999999999877755 57899999999999999999999998
Q ss_pred HhcCCCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 379 LSVKSSY-------DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 379 ~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++..... .+.+.-+++..- =.+++..|..++++..+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8654331 122222233222 238999999999999987555 56789999999999999999999999987
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-07 Score=91.59 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcC---CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CC--CC-
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVK---SSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEE----GG--KP- 420 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p- 420 (535)
++.+...|+..+++++|..+++...+.- +.++ ..+++.|...|.+.|++++|+++|++.... +. .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 4455555566666666666555443211 1111 345666666666677777666666665431 11 11
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSW-RPK-PVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~-~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
....++.|...|.+.+++++|.++|.+.....+..|. .|+ ..+|..|..+|...|+++.|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1344556666666666666666666665533322221 122 2567777777777777777777666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-07 Score=92.47 Aligned_cols=238 Identities=17% Similarity=0.209 Sum_probs=116.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHhcCCCHhHHHHHHHHhHhC----CC-CC
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEK-----GI-RLDVYS-YNIWLSSCGSQGSTEKMEGVFELMKVD----KA-VN 279 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~pd~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~ 279 (535)
.+...+...|...|+++.|..++.+.++. |. .|.+.+ .+.+...|...+++++|..+|+.+... .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444556666666666666666655443 11 122222 122444555566666666666655421 01 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----ccC-CCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC
Q 009424 280 PN-WTTFSTMATMYIKMGQVEKAEESLRRVESR-----ITG-RDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSV---FP 348 (535)
Q Consensus 280 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~ 348 (535)
|. ..+++.|-..|.+.|++++|...+++..+- |.. |.+. .++.+...|...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 223444555566666666666666554221 111 1111 2344445555566666666666544331 11
Q ss_pred CCch----hhHHHHHHHHHhcCCHhhHHHHHHHHHhcC----CC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-
Q 009424 349 GVTN----LGYHAMISSLARIGDIEGMEKIFEEWLSVK----SS--Y-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEE- 416 (535)
Q Consensus 349 ~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 416 (535)
.++. .+++.+...|-..|++++|.++|+.++... .. + ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2221 355566666666666666666666554321 11 1 1233445555556666666666666554432
Q ss_pred -CCCCCH----hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 417 -GGKPNS----TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 417 -~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-..|+. .+|..|...|.+.|++++|+++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 233332 345555566666666666666655554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-06 Score=81.26 Aligned_cols=309 Identities=11% Similarity=0.027 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcch---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP---YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI- 251 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~- 251 (535)
...|..+...+...|+.+++.+.+.+..+.. +++... .......+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 4456666666667777777766666655432 122221 2222334567788888888888877763 233334332
Q ss_pred --HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh
Q 009424 252 --WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329 (535)
Q Consensus 252 --ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (535)
........+..+.+.+.+..... ..+.+......+...+...|++++|...+++..+..+ .+...+..+...|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 22222234555555555554221 1223334455666778888899999998888876532 345567777788888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CCHHHH-H--HHHHHHHHcCC
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YDPRIA-N--LMMSWYVKEGN 402 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-~--~li~~~~~~g~ 402 (535)
.|++++|+..+++.....+.++. ..|..+...+...|++++|..++++....... +..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 89999999988887765432221 23456777888889999999999887544331 112111 1 33344444554
Q ss_pred hhHHHHH--H-HHHHHcCC-CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccC---CCCCCCHHHHHHHHH--HHHh
Q 009424 403 FDKAEAF--F-NSIIEEGG-KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGA---KSWRPKPVNVINFFK--ACEE 473 (535)
Q Consensus 403 ~~~A~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~g~~p~~~~~~~ll~--a~~~ 473 (535)
.+.+.+. . ..-..... ............++...|+.++|.++++.+...... .+... ..+-..++. ++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~~~l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPA-RDVGLPLAEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH-HhhhHHHHHHHHHHH
Confidence 4433333 1 11111100 011122234666777889999999999988732211 11111 112222333 4567
Q ss_pred cCChhhHHHHHHHHhcC
Q 009424 474 ESDMGSKEAFVALLRQP 490 (535)
Q Consensus 474 ~g~~~~a~~~~~~~~~~ 490 (535)
.|++++|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999988887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-07 Score=83.10 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
|..+...|.+.|+.++|...|++..+..+ .+...|+.+...+...|++++|+..|++..+..+.. ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 44444445555555555555555544221 123445555555555555555555555555433221 2344444455555
Q ss_pred cCCHhhHHHHHHHHHhc
Q 009424 365 IGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~ 381 (535)
.|++++|.+.++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-05 Score=74.20 Aligned_cols=403 Identities=11% Similarity=0.025 Sum_probs=224.2
Q ss_pred HHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH--HHHHH-
Q 009424 77 FRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI--QLDLI- 153 (535)
Q Consensus 77 i~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~--li~~~- 153 (535)
++-+..+|+++ +|+..-+.++..+ +-|...+.+=+-++.+.+.+++|+.+.+. .+ . ..+.+. +=.+|
T Consensus 19 ln~~~~~~e~e-~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~--~---~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 19 LNRHGKNGEYE-EAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG--A---LLVINSFFFEKAYC 88 (652)
T ss_pred HHHhccchHHH-HHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc--h---hhhcchhhHHHHHH
Confidence 45566778888 9999999998854 34566778888889999999999965443 22 0 011111 23344
Q ss_pred -HhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH-hcCChhHHH
Q 009424 154 -AKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM-KIKEYDEVE 231 (535)
Q Consensus 154 -~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~ 231 (535)
.+.+..++|...++.... -|..+-..-...+-+.|++++|+++|+.+.+.+. ..+..-+.+-+ ..+..-.+
T Consensus 89 ~Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~a~l~~- 161 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVAAALQV- 161 (652)
T ss_pred HHHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHhhhH-
Confidence 467899999999996554 3444555555667789999999999999977642 22222221111 00000011
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH---HHhcCCCHhHHHHHHHHhHh-------CCCCC-CCHHH-----HHHHHHHHHhc
Q 009424 232 SMVSEMKEKGIRLDVYSYNIWLS---SCGSQGSTEKMEGVFELMKV-------DKAVN-PNWTT-----FSTMATMYIKM 295 (535)
Q Consensus 232 ~~~~~m~~~g~~pd~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~-------~~~~~-~~~~~-----~~~li~~~~~~ 295 (535)
+.+......| ..+|..+.+ .+...|++.+|+++++...+ +.... -+... ---|.-.+-..
T Consensus 162 ---~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 162 ---QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred ---HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 0122222222 223322222 34456666666666665511 00000 00000 11122334456
Q ss_pred CCHHHHHHHHHHHHhcccCCCcchH----HHHHHHH--------------------------------------------
Q 009424 296 GQVEKAEESLRRVESRITGRDRVPY----HYLLSLY-------------------------------------------- 327 (535)
Q Consensus 296 g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~-------------------------------------------- 327 (535)
|+-++|..++....+... +|.... |.++..-
T Consensus 238 Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655432 222111 1111000
Q ss_pred -HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC--CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 328 -GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG--DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 328 -~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
...+..+.+.++-. ..-...+...+..++..+.+.. ....+.+++...-+....-...+.-..+......|+++
T Consensus 317 ~l~tnk~~q~r~~~a---~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSA---SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHH---hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 00011111111111 1112222345556665554332 35666777776655544434567777888889999999
Q ss_pred HHHHHHH--------HHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH----HHHHHHHHHH
Q 009424 405 KAEAFFN--------SIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV----NVINFFKACE 472 (535)
Q Consensus 405 ~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~----~~~~ll~a~~ 472 (535)
.|.+++. .+.+.+..|-.+. .+...+.+.++.+.|..++.++..+-. .-.+... ++.-+...-.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~--~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWR--KQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHH--HhcccchHHHhHHHHHhHHHH
Confidence 9999999 6666555555544 455666666666666666666652210 0111222 3333333445
Q ss_pred hcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+.|.-++|..+++++.+..+........||.+|+.-
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 679999999999999999888888999999999653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-05 Score=71.75 Aligned_cols=350 Identities=12% Similarity=0.017 Sum_probs=193.3
Q ss_pred HhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcC-CHhHHH--------------HHHHHHHHCC-
Q 009424 143 ASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR-MRGNAE--------------LLIDKMRDKG- 206 (535)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~--------------~~~~~m~~~g- 206 (535)
.......+.+|...++-..|.....+.+...+. .--|.|+.-.-+.| +-.++. +...-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~-p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS-PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccc-hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 344556677888889999999998888864222 22233333222222 211111 1111111111
Q ss_pred --------------CCcCcchHHHHHHHHHh--cCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 009424 207 --------------YAVHSLPYNVMMTLYMK--IKEYDEVESMVSEMKEK-GIRLDVYSYNIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 207 --------------~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-g~~pd~~~~~~ll~~~~~~g~~~~a~~~~ 269 (535)
++|+..+....+.++++ .++...+...+-.+... -++-|+.....+.+++...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 22333333334444433 34444444444333332 24556677777777777788888887777
Q ss_pred HHhHhCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 009424 270 ELMKVDKAVNPNWTTF-STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP 348 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 348 (535)
++..- +.|+..+- ....-.+.+.|+.++...+...+... ..-....|-.-.......++++.|+.+-++..+..+
T Consensus 256 e~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~ 331 (564)
T KOG1174|consen 256 SSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP 331 (564)
T ss_pred HHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc
Confidence 77662 23332221 11112245667777766666665431 112233344444444556677777777776655332
Q ss_pred CCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 349 GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 349 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
. +...|..-..++...|+.++|.-.|+......+. +..+|..|+..|...|++.+|.-+-+..... +.-+..+.+.+
T Consensus 332 r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~ 408 (564)
T KOG1174|consen 332 R-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF 408 (564)
T ss_pred c-cchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence 2 1133434445667778888888888877654433 6778888888888888888877666554432 11244454444
Q ss_pred H-HHHH-ccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 429 A-EGHI-RERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 429 i-~~~~-~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
. ..+. .-..-++|.+++++.. .+.|+.. ..+.+...|...|..+.+..+++.....-+ ++...+.|.+.+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L------~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSL------KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIM 481 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhh------ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 2 2222 2223467777777777 5677654 344455678888888888888888775432 222556666666
Q ss_pred Hh
Q 009424 506 DE 507 (535)
Q Consensus 506 ~~ 507 (535)
..
T Consensus 482 ~A 483 (564)
T KOG1174|consen 482 RA 483 (564)
T ss_pred HH
Confidence 43
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-05 Score=72.52 Aligned_cols=205 Identities=11% Similarity=0.079 Sum_probs=139.5
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcccCCCcc-hHHHHHHH
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM-----YIKMGQVEKAEESLRRVESRITGRDRV-PYHYLLSL 326 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~ 326 (535)
+--|.+.+++.+|..+...+.. ..|-......++.+ ......+.-|.+.|+-.-.++.+-|.+ --.++.++
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3346677788888777766642 23333333333321 122234566777777766666666554 45567777
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHcCChhH
Q 009424 327 YGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA-NLMMSWYVKEGNFDK 405 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~ 405 (535)
+.-..++++++-.++.++.-...-|.+-+ .+..+.+..|...+|+++|-.+....++ |..+| ..|..+|.+++.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 77778899999999999887666665554 5778999999999999999887554445 55666 457789999999999
Q ss_pred HHHHHHHHHHcCCCCCHhH-HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH
Q 009424 406 AEAFFNSIIEEGGKPNSTS-WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC 471 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~ 471 (535)
|+.++-.+... .+..+ ...+..-|.+.+++--|-+.|+.+. ...|++..|..--.||
T Consensus 447 AW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE------~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 447 AWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELE------ILDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------ccCCCccccCCccchH
Confidence 99987665431 12223 2334467888999999999999888 5678888776433333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-07 Score=82.75 Aligned_cols=216 Identities=11% Similarity=0.001 Sum_probs=106.8
Q ss_pred CHhHHHHHHHHHHHCC-CCcC--cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 191 MRGNAELLIDKMRDKG-YAVH--SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|+++.|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555421 1111 2335555556666666666666666666653 2345566666666666666666666
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 009424 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF 347 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 347 (535)
.|+...+.. +.+..+|..+...+...|++++|.+.|+...+. .|+..........+...++.++|+..|.+.....
T Consensus 120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 666666421 233455666666666666666666666666543 2332211111222334455666666665433221
Q ss_pred CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhc---CCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 348 PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV---KSS--Y-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 348 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.++. |. ........|+...+ +.+..+.+. .+. | ....|..+...+.+.|++++|...|++..+.
T Consensus 196 -~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 -DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1111 11 11122233444333 233333211 000 0 1235556666666666666666666666654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.7e-06 Score=80.86 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=22.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 220 LYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 220 ~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
.+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 3344444444444444444432 1223333444444444444444444444443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-05 Score=79.08 Aligned_cols=135 Identities=12% Similarity=-0.000 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.|......+.+.+..++|...+.+..+.. ......|......+-..|+.++|.+.|......++. ++.+.+++...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 45667788888999999987777775543 236777888888888999999999999988875444 5778899999999
Q ss_pred ccccHHHHHH--HHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 434 RERRILEALS--CLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 434 ~~g~~~~A~~--~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+.|+..-|.. ++.++. .+.| ++..|-.+-..+.+.|+.+.|-+.|....+.....+.
T Consensus 730 e~G~~~la~~~~~L~dal------r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDAL------RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9998888887 999999 3455 6778999999999999999999999999887666554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-05 Score=71.13 Aligned_cols=303 Identities=10% Similarity=0.047 Sum_probs=186.0
Q ss_pred HHHHHH--cCCHhHHHHHHHHHHHC-CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhc
Q 009424 183 LNAYVR--ARMRGNAELLIDKMRDK-GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS-YNIWLSSCGS 258 (535)
Q Consensus 183 i~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~-~~~ll~~~~~ 258 (535)
|.++++ .++...|...+--+... -++-|+.....+.+.+...|+.++|+..|+..+..+ |+..+ .....-.+..
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHh
Confidence 444443 34444444444433322 245567777888888888888888888888776653 33221 1111222356
Q ss_pred CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHH
Q 009424 259 QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 259 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 338 (535)
.|+.+....+...+... ...+...|-.-........+++.|+.+-++..+... .+...+-.--..+.+.|++++|.-
T Consensus 279 eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred ccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHH
Confidence 67777766666665531 122333344334444556777888877777654321 223333333456677888888888
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH-HHHHH-cCChhHHHHHHHHHHHc
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM-SWYVK-EGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~ 416 (535)
.|+..+...|. +-..|..++.+|...|.+.+|..+-+...+.- .-+..+...+. ..+.- -.--++|.+++++-..
T Consensus 356 aFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~- 432 (564)
T KOG1174|consen 356 AFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK- 432 (564)
T ss_pred HHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-
Confidence 88887774322 33678888888888888888877666554321 12334433331 22222 1224567777776654
Q ss_pred CCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 417 GGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 417 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
+.|+ ...-+.+...+...|..++++.++++.. ...||....+.+-..+.....+.++...|....+.+|.+.
T Consensus 433 -~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L------~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 433 -INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL------IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred -cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH------hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 3444 3345556677778888888888888887 5678888888888888888888888888888888887776
Q ss_pred hhHHH
Q 009424 496 KDYMS 500 (535)
Q Consensus 496 ~~~~~ 500 (535)
.+..-
T Consensus 506 ~sl~G 510 (564)
T KOG1174|consen 506 RTLRG 510 (564)
T ss_pred HHHHH
Confidence 65443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-06 Score=83.01 Aligned_cols=274 Identities=13% Similarity=0.167 Sum_probs=136.7
Q ss_pred HHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 009424 127 EVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKM 202 (535)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 202 (535)
++.+++++.+.+-..++...+..+.++...+-..+-.++++++.-. .-+...-|.||-...+. +.....+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 4555555555334445555555566666666666666666655321 11222333333333332 233444444444
Q ss_pred HHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH
Q 009424 203 RDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW 282 (535)
Q Consensus 203 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 282 (535)
..-+ .| .+...+..++-+++|..+|+..- .+....+.||. .-+.++.|.++-+... ..
T Consensus 1047 dnyD-a~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p 1104 (1666)
T KOG0985|consen 1047 DNYD-AP------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EP 1104 (1666)
T ss_pred ccCC-ch------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------Ch
Confidence 3332 11 12334445555666666665431 23344444443 2344555555444433 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 009424 283 TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL 362 (535)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 362 (535)
.+|+.+..+-.+.|.+.+|.+-|-+. -|+..|.-+++...+.|.+++-...+...++..-.|... +.+|-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 35666666666666666666555432 345556666666666666666666665555544444332 2566666
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
++.+++.+-++++. .||......+.+-|...|.++.|.-+|. ++.-|..+...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHH
Confidence 66666555444432 2444445555555555555555555443 3334455555555555555555
Q ss_pred HHHHH
Q 009424 443 SCLKG 447 (535)
Q Consensus 443 ~~~~~ 447 (535)
..-++
T Consensus 1241 D~aRK 1245 (1666)
T KOG0985|consen 1241 DAARK 1245 (1666)
T ss_pred HHhhh
Confidence 44443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-05 Score=74.85 Aligned_cols=400 Identities=13% Similarity=0.055 Sum_probs=220.0
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHH
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~ 152 (535)
|-.++..|- .+++. ..+.+.+..+.. ..-...|....--.+...|+-++|.......++.. .-+...+-.+.-.
T Consensus 11 F~~~lk~yE-~kQYk-kgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCYE-TKQYK-KGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHH-HHHHH-hHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHHHH
Confidence 344444442 34555 566666666652 22233444333334456677777777766666543 2223333333344
Q ss_pred HHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 153 IAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
+....++++|.+.|...... +.|...|.-+--.-++.|+++.......+..+.. +-....|.....++.-.|++..|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55556788888888776655 3455667666666677777777777766665542 234567888888888888889998
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHH------HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 232 SMVSEMKEKG-IRLDVYSYNIWLS------SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 232 ~~~~~m~~~g-~~pd~~~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
.+.++..+.. -.|+...+.-... ...+.|.++.|.+.+..-... +......--.-.+.+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8888887754 2455555543322 245677777777777665532 222233334556678888899999999
Q ss_pred HHHHHhcccCCCcchHHHHH-HHHHhcCCHHHHH-HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 009424 305 LRRVESRITGRDRVPYHYLL-SLYGSVGKKEEVY-RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK 382 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 382 (535)
+..+... .||..-|.... .++.+..+.-+++ .+|....+..+........ =++..-...-.+....++..+.+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl-plsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL-PLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc-cHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9888764 46666665554 3443343434444 6666665533322111000 0011111122233334445555555
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----cC----------CCCCHhHHH--HHHHHHHccccHHHHHHHHH
Q 009424 383 SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE----EG----------GKPNSTSWE--TLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 383 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~ 446 (535)
+. .++..+...|-.-...+--.++.-.+.. .| -.|....|+ .++..|-+.|+++.|.++++
T Consensus 319 ~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 43 2333333333322222211122111111 10 034444443 34566667777888888887
Q ss_pred HhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 447 GAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 447 ~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.+. +-.|+.+ .|..=.+.+.+.|++++|..++++..+.+..
T Consensus 396 ~AI------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 396 LAI------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HHh------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 777 4556543 3333346677777888887777777766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-05 Score=73.62 Aligned_cols=390 Identities=11% Similarity=0.032 Sum_probs=239.6
Q ss_pred cCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhH
Q 009424 83 MDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASA 162 (535)
Q Consensus 83 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A 162 (535)
.|+.+ +|....+.-.+. -.-+.+.|..+.-.+...+++++|++.|..+.+.+ +.+...+.-+--.=+..|+++..
T Consensus 54 lg~~~-ea~~~vr~glr~-d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 54 LGKKE-EAYELVRLGLRN-DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccchH-HHHHHHHHHhcc-CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhH
Confidence 36666 777766655442 22255667666666667788999999999998876 44555555554455666777666
Q ss_pred HHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCcCcchHHHHH------HHHHhcCChhHHHHHH
Q 009424 163 EDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG-YAVHSLPYNVMM------TLYMKIKEYDEVESMV 234 (535)
Q Consensus 163 ~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~a~~~~ 234 (535)
...-....+. +.....|..+..++.-.|+...|..+.++..+.. -.|+...+.-.. ....+.|..++|++.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6555555443 2456789999999999999999999999988764 245665554433 3445678888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHhcc
Q 009424 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS-TMATMYIKMGQVEKAE-ESLRRVESRI 312 (535)
Q Consensus 235 ~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g 312 (535)
..-... +.-....--.-...+.+.+++++|..++..+..+ .||..-|. .+..++.+--+.-++. .+|....+.-
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 655443 2212222334455678899999999999999965 56666555 4445554444444444 6676665432
Q ss_pred cCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH----hcC------
Q 009424 313 TGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL----SVK------ 382 (535)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~------ 382 (535)
.. ....-..=++........+..-.++..+.+.|+.+ ++..+.+.|-.-...+-.+++.-.+. ..|
T Consensus 285 ~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 285 PR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred cc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 11 11111111111111112333334444444444432 34455555443332222222222211 111
Q ss_pred ----CCCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC
Q 009424 383 ----SSYDPRIA--NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAK 455 (535)
Q Consensus 383 ----~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 455 (535)
-.|....| -.++..|-+.|+++.|...++...+. .|+ +.-|-.=.+.+..+|+.++|..++++.. +.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~----el 434 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ----EL 434 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH----hc
Confidence 13454444 45778888999999999999998874 444 2334444578889999999999999999 33
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 009424 456 SWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 456 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
. .||...-.--..-..+....++|.++.....+.|.
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 2 34444433445556677889999999999988875
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-06 Score=72.49 Aligned_cols=192 Identities=14% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK 332 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (535)
.-.|...|+...|..-+++..+.. +.+..+|..+...|-+.|..+.|.+.|+......+ .+..+.|..-.-+|..|+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 334445555555555555544321 22333444455555555555555555554433211 122233333444444445
Q ss_pred HHHHHHHHHHHHhhCCCC-chhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 333 KEEVYRVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
+++|...|++....-.-+ ...+|..+.-+..+.|+.+.|...+++.++.... .+...-.+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 555554444444321111 1134444444444455555555555544443332 22333344444444455555554444
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 412 SIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 412 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.....+. ++..+...-|..-.+.|+.+.+-++=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444333 344444444444444444444444433333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-05 Score=81.19 Aligned_cols=347 Identities=11% Similarity=0.051 Sum_probs=174.1
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 91 ASVLNDWEKGGRS--LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 91 ~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
..+.++..+-++. -|+...+..++++...+-..+-+++++.++-....+.-+....|.++-.-.+..+ ....+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHH
Confidence 3455555555433 4777777899999999999999999999987765566566666666554444332 233344444
Q ss_pred CCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC---------------------CcCcchHHHHHHHHHhcCC
Q 009424 169 LPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGY---------------------AVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 169 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------~p~~~~~~~li~~~~~~g~ 226 (535)
+..- .|+ +......++-+++|..+|++....+- --....|..+..+-.+.|.
T Consensus 1046 LdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1046 LDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred hccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4332 122 12223344555666666655422100 0012345555555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
..+|++-|- +. -|...|..+++.+.+.|.+++-.+++...+++ .-.| .+-+.||-+|++.+++.+-.+++
T Consensus 1120 v~dAieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~--~id~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREP--YIDSELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred hHHHHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCc--cchHHHHHHHHHhchHHHHHHHh-
Confidence 555554442 11 14445555555555555555555555444432 1122 23344555555555554443333
Q ss_pred HHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 307 RVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
..||......+-+-|...|.++.|.-+|..+. -|..+...+...|+++.|..--+++ .+
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 13455555555555555555555555444331 2444455555555555554443322 14
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVI 465 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~ 465 (535)
..+|--+-.+|...+.+.-|. |-..++.....-..-++.-|-..|.+++-+.+++... |++--+ ..|+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L------GLERAHMgmfT 1317 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL------GLERAHMGMFT 1317 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh------chhHHHHHHHH
Confidence 445555555555444433322 2222223344445566666777777777777776666 444322 2344
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 009424 466 NFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
-+.-.|++- +.++..+.++..
T Consensus 1318 ELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHH
Confidence 443344332 344444444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-06 Score=72.28 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL 362 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 362 (535)
+...|.-.|...|+...|..-+++..+. .| +..+|..+...|.+.|+.+.|.+-|++.....+. +..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 4556777899999999999999999875 34 4558999999999999999999999999885444 235677888888
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSY-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
|..|.+++|.+.|++......-+ -..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999999988654322 3467888888888999999999999999987554 566777888889999999999
Q ss_pred HHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 442 LSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
..+++... ..+ .++..++...|+.-...||.+.+.++=.++.+.-|..
T Consensus 193 r~~~~~~~----~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 193 RLYLERYQ----QRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHH----hcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999988 444 4889999889999999999999988887777655443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00012 Score=70.06 Aligned_cols=423 Identities=9% Similarity=0.075 Sum_probs=257.3
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDA 146 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (535)
-|+-+|+.||+-+-.. ..+ ++.+++++|.. +.| .+..|..-++.-.+.++++....+|.+.+..- +. ...+
T Consensus 18 ~di~sw~~lire~qt~-~~~-~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln--lDLW 89 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PID-KVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN--LDLW 89 (656)
T ss_pred ccHHHHHHHHHHHccC-CHH-HHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh--HhHH
Confidence 4788999999988666 777 99999999986 455 56677788999999999999999999888765 33 4444
Q ss_pred HHHHHHHHhh-CCHhhHHH----HHhh----CCCCCCCHHHHHHHHHH---------HHHcCCHhHHHHHHHHHHHCCCC
Q 009424 147 AIQLDLIAKV-HGVASAED----FFLS----LPDTLKDRRVYGALLNA---------YVRARMRGNAELLIDKMRDKGYA 208 (535)
Q Consensus 147 ~~li~~~~~~-g~~~~A~~----~f~~----~~~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~ 208 (535)
..-++.-.+. |+...++. .|+- +--...+-..|+..+.. |..+.+.+..+++++++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 4444433322 33322221 2221 11101334456666553 45566778888888888764221
Q ss_pred c------CcchHHHHHHHHH-------hcCChhHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHhc
Q 009424 209 V------HSLPYNVMMTLYM-------KIKEYDEVESMVSEMKE--KGIRLDVYS---------------YNIWLSSCGS 258 (535)
Q Consensus 209 p------~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~pd~~~---------------~~~ll~~~~~ 258 (535)
- |-..|..=|+... +...+..|.+++++... +|+..+..+ |-.+|.-= +
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-k 248 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-K 248 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-h
Confidence 1 1112222222111 22346677777777654 343322222 33333211 1
Q ss_pred CCCHh---------HHHHHHHHhHhCCCCCCCHHHH-H----HHHHHHHhcCC-------HHHHHHHHHHHHhcccCCCc
Q 009424 259 QGSTE---------KMEGVFELMKVDKAVNPNWTTF-S----TMATMYIKMGQ-------VEKAEESLRRVESRITGRDR 317 (535)
Q Consensus 259 ~g~~~---------~a~~~~~~~~~~~~~~~~~~~~-~----~li~~~~~~g~-------~~~A~~~~~~m~~~g~~~~~ 317 (535)
.+-+. ...-++++...-.+..|++... . ..-+.+...|+ -+++..+++.....-...+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1112223322222333332211 1 11122333444 35566666665443223333
Q ss_pred chHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-CHHHHHHH
Q 009424 318 VPYHYLLSLYGSV---GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-DPRIANLM 393 (535)
Q Consensus 318 ~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 393 (535)
.+|..+.+---.. ...+.....+++.......-...+|...++.--+..-++.|+.+|.++.+.+..+ ++.+++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 3444333221111 1256666777777664333344789999999999999999999999999988776 88899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH--HHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP--VNVINFFKAC 471 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~--~~~~~ll~a~ 471 (535)
+.-|| .++.+-|.++|+--..+- .-+..--...+.-+..-++-..|..+|++.. ..++.||. ..|..+|.-=
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l----~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVL----TSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHH----hccCChhhhHHHHHHHHHHH
Confidence 99887 578899999998755431 1133444567788888899999999999999 66677665 5899999999
Q ss_pred HhcCChhhHHHHHHHHhcCCC---CChh-hHHHHHHHh
Q 009424 472 EEESDMGSKEAFVALLRQPGY---RKEK-DYMSLIGLT 505 (535)
Q Consensus 472 ~~~g~~~~a~~~~~~~~~~~~---~~~~-~~~~L~~~y 505 (535)
+.-|+...+.++-+++...-+ .+.. .-..+++.|
T Consensus 483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 999999999999888765533 3333 556667777
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-06 Score=83.42 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=65.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
.+.+......+.+|+.+++.++.... -..-|..+.+-|+..|+++.|.++|.+.. .++--|.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 34455556667777777776665532 22335566667777777777777775443 2444567777777
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (535)
++++|.++-++. .|.+.....|.+-..-+-++|++.+|.++|
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777777766554 334444445555455555556555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-05 Score=83.67 Aligned_cols=340 Identities=8% Similarity=-0.015 Sum_probs=213.0
Q ss_pred HHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--C----CcCc--chHHHHHHHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG--Y----AVHS--LPYNVMMTLY 221 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~--~~~~~li~~~ 221 (535)
.....|+++.+..+++.++.. ..+..........+...|++++|..++.+....- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567888888888877532 1222223344455567899999999998775421 0 1111 1112223445
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCC--CC--CHHHHHHHHHHHH
Q 009424 222 MKIKEYDEVESMVSEMKEKGIRLDV----YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAV--NP--NWTTFSTMATMYI 293 (535)
Q Consensus 222 ~~~g~~~~a~~~~~~m~~~g~~pd~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~ 293 (535)
...|++++|...+++..+.-...+. ...+.+...+...|+++.|...+.+......- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988764211222 23455566677899999999999887632110 11 1234556667788
Q ss_pred hcCCHHHHHHHHHHHHhc----ccCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCc--hhhHHHHHHHH
Q 009424 294 KMGQVEKAEESLRRVESR----ITGR---DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP--GVT--NLGYHAMISSL 362 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~----g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~--~~~~~~ll~~~ 362 (535)
..|++++|...+++..+. +... ....+..+...+...|++++|...+.+...... .+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998886542 2111 122344455667778999999999988755311 111 23444566677
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCC-CHHHH-----HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHH
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSY-DPRIA-----NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN---STSWETLAEGHI 433 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 433 (535)
...|+.+.|.+.+.......... ....+ ...+..+...|+.+.|.+.+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875431111 11111 1122445568999999999876554211111 111345667788
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
..|++++|...++++.......|..++. .+...+-.++...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999988433234444332 345556668889999999999999887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=85.33 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCCh-hhH
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM-GSK 480 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~-~~a 480 (535)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.++. ... .-|..++..++..+...|+. +.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al----~~~-~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL----EKD-PNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC----CC--CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH----Hhc-cCCHHHHHHHHHHHHHhCCChhHH
Confidence 355555555554432 23344445555555555555555555555544 111 11233444444444454544 344
Q ss_pred HHHHHHHhcCCC
Q 009424 481 EAFVALLRQPGY 492 (535)
Q Consensus 481 ~~~~~~~~~~~~ 492 (535)
.+++.++....+
T Consensus 256 ~~~l~qL~~~~p 267 (290)
T PF04733_consen 256 ERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHCHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 455555554433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-09 Score=61.13 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCCcCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 009424 206 GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237 (535)
Q Consensus 206 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 237 (535)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.9e-06 Score=86.35 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=121.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEK-GIR---LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTF 285 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~---pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 285 (535)
....|-..|....+.++.++|.+++++.+.. +++ --...|.++++.-..-|.-+...++|+++.+- ..-..+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3455666666666677777777776666543 111 01234555555555556666666666666642 2223456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHh
Q 009424 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLAR 364 (535)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~ 364 (535)
..|...|.+.+..++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.+....-+.... ....-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66666777777777777777776543 2234556666666666666666676666666654444222 223334444456
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 420 (535)
.|+.+.++.+|+..+...++ -...|+..|++-.++|+.+.++.+|++..+.++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666666554443 45566666666666666666666666666655543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-06 Score=81.22 Aligned_cols=268 Identities=17% Similarity=0.169 Sum_probs=163.0
Q ss_pred HHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---------C-----------
Q 009424 147 AIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDK---------G----------- 206 (535)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g----------- 206 (535)
.+.|..|.+.|....|.+....-.....|......+..++.+..-++.|-++|+++... |
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 45678888888887776655332222245555555555555555555555555554321 0
Q ss_pred --CCcCcchH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHH
Q 009424 207 --YAVHSLPY-NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWT 283 (535)
Q Consensus 207 --~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 283 (535)
++..+++. ......+...|+++.|+.-|-+.. ...-.+.+.....+|.+|+.+++.+..+ +.-.-
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq---k~~s~ 766 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ---KTASG 766 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh---ccccc
Confidence 11111111 111122233344444443332211 1122345566778899999999988743 23334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
-|..+.+.|+..|+++.|.++|-+. ..++-.|.+|.+.|+|+.|.++-.+.. ++......|.+-..-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence 5777889999999999999999753 236677899999999999998876653 35545566766677778
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
+.|++.+|.+++-.+ | .|+ .-|.+|-+.|..++.+++.++-... --..|...+..-|-..|+...|.+
T Consensus 836 ehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHH
Confidence 889999998887543 2 233 3578888888888888877654321 112344455555666677776666
Q ss_pred HHHHhH
Q 009424 444 CLKGAF 449 (535)
Q Consensus 444 ~~~~m~ 449 (535)
-|-++.
T Consensus 904 ~flea~ 909 (1636)
T KOG3616|consen 904 HFLEAG 909 (1636)
T ss_pred HHHhhh
Confidence 665554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.5e-06 Score=85.70 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=184.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP---NWTTFSTMATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (535)
|++..... +-....|-..|.-....+++++|+++.++..+.-++.- -...|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 33456788888888899999999999999886422211 134788888888888888899999999876
Q ss_pred cccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-CHHH
Q 009424 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-DPRI 389 (535)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~ 389 (535)
. --....|..|...|.+.+..++|.++|+.|.+... -....|...+..+.+..+-+.|..++.++++.-++- ....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 3 22244688889999999999999999999988644 334678899999999999999999999887654331 3445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH--HHHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP--VNVINF 467 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~--~~~~~l 467 (535)
..-.+..-.++|+.+.++.+|+......++ ....|+.+|+.=.++|+.+.+..+|+++. ..++.|-. ..|.-.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi----~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVI----ELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHH----hcCCChhHhHHHHHHH
Confidence 566777788899999999999998876555 67889999999999999999999999999 77777754 355566
Q ss_pred HHHHHhcCChhhHHHHHHHH
Q 009424 468 FKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~ 487 (535)
+..=...|+-+.++.+-.+.
T Consensus 1678 LeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHhcCchhhHHHHHHHH
Confidence 66556667765555444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-05 Score=66.10 Aligned_cols=324 Identities=12% Similarity=0.090 Sum_probs=203.5
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHH
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLD 151 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~ 151 (535)
+++.|--+.+..++. +|++++..-.++ .| +...++.+..+|-...++..|-..++++-... ......-+ --..
T Consensus 13 ftaviy~lI~d~ry~-DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl-Y~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYA-DAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL-YQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHH-HHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH-HHHH
Confidence 566777777788888 888888776653 34 55566677777778888999999888887654 11111111 1123
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHH--HHH--HHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRVYGALL--NAY--VRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li--~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
.+.+.+.+.+|.++...|.+. ....+..+ .+- -..+++..++.+.++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 445677888888888888762 22222222 111 23577888888888877554 555555555566788889
Q ss_pred hHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC-------------CCHH--------HH
Q 009424 228 DEVESMVSEMKEK-GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN-------------PNWT--------TF 285 (535)
Q Consensus 228 ~~a~~~~~~m~~~-g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~~--------~~ 285 (535)
++|++-|+...+- |.. ....|+..+ +..+.|+.+.|.+...+++++ |++ ||+. .-
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999888887775 444 445676655 445668888888888887753 221 1211 12
Q ss_pred HHHHH-------HHHhcCCHHHHHHHHHHHHhc-ccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHH
Q 009424 286 STMAT-------MYIKMGQVEKAEESLRRVESR-ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA 357 (535)
Q Consensus 286 ~~li~-------~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 357 (535)
++++. .+.+.|+.+.|.+.+-.|.-+ ....|++|...+.-. -..+++.+..+-+.-+....|-| ..||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP-~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP-PETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC-hHHHHH
Confidence 33443 356789999999998888322 233577777655322 12344555555555555655644 479999
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHH-cCChhHHHHHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSS-YDPRIANLMMSWYVK-EGNFDKAEAFFNSII 414 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 414 (535)
++-.||++.-++.|-.++.+-...... .+...|+ |++++.- .-..++|++-++.+.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999888753222111 2344444 3444443 445677766665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-08 Score=59.38 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=16.3
Q ss_pred CCCCCHhHHHHHHHHHHccccHHHHHHHHHHh
Q 009424 417 GGKPNSTSWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 417 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
|+.||..||++||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00011 Score=70.19 Aligned_cols=354 Identities=8% Similarity=0.065 Sum_probs=210.5
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM 218 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 218 (535)
+.|...++.||.-+... .++++++.++++... +-....|..-|.+-.+.++++...++|.+....- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 67888999999887776 999999999999887 3456789999999999999999999999887653 3577788887
Q ss_pred HHHHhc-CChhH----HHHHHHHH-HHcCCCCCH-HHHHHHHHH---------HhcCCCHhHHHHHHHHhHhCCCCCCCH
Q 009424 219 TLYMKI-KEYDE----VESMVSEM-KEKGIRLDV-YSYNIWLSS---------CGSQGSTEKMEGVFELMKVDKAVNPNW 282 (535)
Q Consensus 219 ~~~~~~-g~~~~----a~~~~~~m-~~~g~~pd~-~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 282 (535)
+.--+. |+... ..+.|+-. .+.|+.+-. ..|+..+.- +....+++..+++++++... .+..=.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~nlE 172 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHNLE 172 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-ccccHH
Confidence 755443 33322 23334433 344544322 234444433 22334567788888888742 111111
Q ss_pred HHHHH------HHHH-------HHhcCCHHHHHHHHHHHHh--cccCCCcch---------------HHHHHHHHHhc--
Q 009424 283 TTFST------MATM-------YIKMGQVEKAEESLRRVES--RITGRDRVP---------------YHYLLSLYGSV-- 330 (535)
Q Consensus 283 ~~~~~------li~~-------~~~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~li~~~~~~-- 330 (535)
..|+- =|+. --+...+..|+++++++.. +|...+..+ |-.+|.---.+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 12321 1111 1123345667777777643 333333222 33333211111
Q ss_pred -----------------------------------------------CC-------HHHHHHHHHHHHhhCCCCchhhHH
Q 009424 331 -----------------------------------------------GK-------KEEVYRVWNLYRSVFPGVTNLGYH 356 (535)
Q Consensus 331 -----------------------------------------------g~-------~~~a~~~~~~m~~~~~~~~~~~~~ 356 (535)
|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122222222222211111111222
Q ss_pred HHHHHHHhcC---CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHH
Q 009424 357 AMISSLARIG---DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-NSTSWETLAEGH 432 (535)
Q Consensus 357 ~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~ 432 (535)
.+.+---..- ..+....+++++...-..--..+|..+++.-.+..-+..|+.+|.+..+.+..+ ++..+++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 1111111111 133344444444433222123467778888888889999999999999987777 778888888877
Q ss_pred HccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh---hHHHHHHH
Q 009424 433 IRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYRKEK---DYMSLIGL 504 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~L~~~ 504 (535)
|. ++.+-|.++|+--.. --+|.. --...+.-+.+.++-..++.+|++.+..+..++. .|..+++.
T Consensus 413 cs-kD~~~AfrIFeLGLk------kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLK------KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred hc-CChhHHHHHHHHHHH------hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 65 677999999998772 223443 4456677888999999999999999988666544 56666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-07 Score=83.70 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHH
Q 009424 333 KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF-DKAEAFFN 411 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 411 (535)
+.+|..+|+++... ..++..+.+.+..+....|++++|.+++.+....... ++.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 1223334444444444455555555554444433322 333444444444444444 33444444
Q ss_pred HHHH
Q 009424 412 SIIE 415 (535)
Q Consensus 412 ~m~~ 415 (535)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00015 Score=69.31 Aligned_cols=102 Identities=8% Similarity=-0.067 Sum_probs=65.5
Q ss_pred HhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 80 LSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 80 ~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
....|+++ .|+.+|.+..... ++|...|+-=..++++.|++.+|++=-..-++.. +.-+.-|+....+..-.|++
T Consensus 12 a~s~~d~~-~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 12 AFSSGDFE-TAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hcccccHH-HHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccH
Confidence 34567777 7777777766532 1255566677777777787777777666665554 33345566666667777788
Q ss_pred hhHHHHHhhCCCCCC-CHHHHHHHHHHH
Q 009424 160 ASAEDFFLSLPDTLK-DRRVYGALLNAY 186 (535)
Q Consensus 160 ~~A~~~f~~~~~~~~-~~~~~~~li~~~ 186 (535)
++|+.-|.+-.+..| |...++-+..++
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 888877777665533 445555555555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-06 Score=82.94 Aligned_cols=264 Identities=14% Similarity=0.136 Sum_probs=186.1
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHH
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (535)
+.+.|++.+|.-.|+..++.. +-+...|--|....+.+++-..|+..+.+..+..+ .|....-.|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 457888999999999888653 55677899898888999998889988888876322 245567777788888888889
Q ss_pred HHHHHHHHHhhCCCC--------chhhHHHHHHHHHhcCCHhhHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCChhHH
Q 009424 336 VYRVWNLYRSVFPGV--------TNLGYHAMISSLARIGDIEGMEKIFEEWLS-VKSSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 336 a~~~~~~m~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
|+..++......+.- +...-.. ........+....++|-++.. .+..+|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999888876533221 0000000 111222234444555555544 44457899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVA 485 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~ 485 (535)
.+.|+......+. |...||-|...++...+.++|+..|++++ .++|+.+ ....|--+|...|.+++|.+.|=
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rAL------qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRAL------QLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHH------hcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999986555 78899999999999999999999999999 6788865 55556668999999999998887
Q ss_pred HHhcCCCC---------C-hhhHHHHHHHhHhhhhcccccCCCCCChhHHHHHHhhh
Q 009424 486 LLRQPGYR---------K-EKDYMSLIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQ 532 (535)
Q Consensus 486 ~~~~~~~~---------~-~~~~~~L~~~y~~~~~~~~~~~~i~~~~~~~~l~~~l~ 532 (535)
..+..... + +..|..|-.++...++.+- .....+..++..+...+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~-l~~a~~~~nl~~l~~~f~ 578 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL-LQEAAPSRNLSALKAEFS 578 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH-HHHhccccCHHHHHHHhc
Confidence 66533221 2 2266666655544444432 233444556666665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00022 Score=64.31 Aligned_cols=205 Identities=10% Similarity=0.042 Sum_probs=128.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
.+..+...|+...|++....+++.. +-|...+..-..+|...|++..|+.=+....+-. ..+..+.--+-..+...|
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhh
Confidence 3444556778888888888887763 3477777777788888888888877776665421 345555666666777788
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
+.+.++...++..+ +.||.... |..-..+.+....++.|.+ ....+++.++.+-.+
T Consensus 238 d~~~sL~~iRECLK--ldpdHK~C------f~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 238 DAENSLKEIRECLK--LDPDHKLC------FPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGE 293 (504)
T ss_pred hHHHHHHHHHHHHc--cCcchhhH------HHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHH
Confidence 88888877777655 34543321 1111122223333333322 223455666666666
Q ss_pred HHHhcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 377 EWLSVKSSYDPR---IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 377 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...+..+..... .+..+-.+|...|++.+|++.-.+..+.... |+.++.--..+|.-...+++|+.=|+.+.
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 665555442222 3334556667778888888888877764222 47777777788888888888888888888
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-05 Score=70.28 Aligned_cols=299 Identities=12% Similarity=0.046 Sum_probs=206.0
Q ss_pred CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHH
Q 009424 101 GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYG 180 (535)
Q Consensus 101 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 180 (535)
|+....--+.+++..+.+..++..+++++..-.+.. +.+....+.+..+|....++..|-..++++....|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 333333345578888888899999999998877765 44667778888899999999999999999887656555443
Q ss_pred HH-HHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 181 AL-LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTL--YMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 181 ~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
-. ...+-+.+.+.+|+++...|... |+...-..-+.+ ....+++..+..+.++....| +..+.+..-....
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 22 24456778999999999988764 222222222222 235678888888888776544 4455555555567
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-------------Ccc------
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-------------DRV------ 318 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-------------~~~------ 318 (535)
+.|+.+.|.+-|+...+-+|+.|- ..||.-+. ..+.|+.+.|++...++.++|++. |+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 899999999999999987787664 45665554 456789999999999999887642 211
Q ss_pred ---------hHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH
Q 009424 319 ---------PYHYLLSLYGSVGKKEEVYRVWNLYRSV-FPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR 388 (535)
Q Consensus 319 ---------~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 388 (535)
.+|.-...+.+.|+.+.|.+.+-.|.-. ....|.+|...+.-.= ..+++.++.+-+..+....+. ...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChH
Confidence 1222233456778888888888887431 2233445554433221 235566666767777666654 567
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNS 412 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~ 412 (535)
|+..++-.||+..-++.|-+++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888899999999998888754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00026 Score=78.04 Aligned_cols=355 Identities=11% Similarity=-0.004 Sum_probs=212.9
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRV--YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 229 (535)
.+...|++.+|......... .+... ...........|+++.+...++.+.......+..........+...|++++
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d--~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGD--AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34555666666665555543 11111 111222344567888777777765322111123333445556677899999
Q ss_pred HHHHHHHHHHcC--C----CCCHH--HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH----HHHHHHHHHHHhcCC
Q 009424 230 VESMVSEMKEKG--I----RLDVY--SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW----TTFSTMATMYIKMGQ 297 (535)
Q Consensus 230 a~~~~~~m~~~g--~----~pd~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 297 (535)
+..++......- . .+... ....+-..+...|+++.|...++....... ..+. ...+.+...+...|+
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCC
Confidence 999998775431 1 11111 122233445679999999999998764211 1121 244566667788999
Q ss_pred HHHHHHHHHHHHhcccC---CC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC--C-chhhHHHHHHHHHhc
Q 009424 298 VEKAEESLRRVESRITG---RD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV----FPG--V-TNLGYHAMISSLARI 365 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~---~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~ 365 (535)
+++|...+++....... +. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999887643211 11 224455566788899999999998886552 211 1 112344555667778
Q ss_pred CCHhhHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhHHH-----HHHHHHHcc
Q 009424 366 GDIEGMEKIFEEWLSVK--SSY--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-PNSTSWE-----TLAEGHIRE 435 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~-----~li~~~~~~ 435 (535)
|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.++........ .....+. ..+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 99999999988875431 111 2334455667788899999999999887642111 1111111 122445567
Q ss_pred ccHHHHHHHHHHhHHhccCCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCChh--hHHHHHHHhH
Q 009424 436 RRILEALSCLKGAFAAEGAKSWRPKP---VNVINFFKACEEESDMGSKEAFVALLRQP----GYRKEK--DYMSLIGLTD 506 (535)
Q Consensus 436 g~~~~A~~~~~~m~~~~~~~g~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~~~--~~~~L~~~y~ 506 (535)
|+.+.|.+++.... ........ ..+..+..++...|+.++|...+++..+. |..... ....+..+|.
T Consensus 667 g~~~~A~~~l~~~~----~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 667 GDKEAAANWLRQAP----KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred CCHHHHHHHHHhcC----CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 89999999988766 22211111 11345566788889999999999988654 333333 4566667777
Q ss_pred hhhhccc
Q 009424 507 EAVAENN 513 (535)
Q Consensus 507 ~~~~~~~ 513 (535)
..|+..+
T Consensus 743 ~~G~~~~ 749 (903)
T PRK04841 743 QQGRKSE 749 (903)
T ss_pred HcCCHHH
Confidence 7776655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00011 Score=70.28 Aligned_cols=104 Identities=10% Similarity=-0.076 Sum_probs=80.4
Q ss_pred HHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCC-HHHHHHHHHHHHHcCCH
Q 009424 114 KELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKD-RRVYGALLNAYVRARMR 192 (535)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~ 192 (535)
.+....|+++.|+..|-..+... +.+...|+.-..+|++.|++++|.+=-.+-.+..|+ ...|+-.-.+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~---p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS---PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC---CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 45567899999999999999886 448888888999999999999998766665555455 45788888888889999
Q ss_pred hHHHHHHHHHHHCCCCcCcchHHHHHHHH
Q 009424 193 GNAELLIDKMRDKGYAVHSLPYNVMMTLY 221 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 221 (535)
++|+.-|.+-.+.. +-|...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 99999999877653 23344444444444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00068 Score=65.75 Aligned_cols=348 Identities=11% Similarity=0.080 Sum_probs=203.4
Q ss_pred HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHH--HHHH--
Q 009424 111 RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGAL--LNAY-- 186 (535)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~l--i~~~-- 186 (535)
+=+..+...+++++|.+..+.++..+ +-+...+..-+-+....+++++|.++.+.-... .+++.. =.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhHHHHHHH
Confidence 44566678899999999999999876 566777777777889999999999777654431 222322 3444
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHhHH
Q 009424 187 VRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL-DVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~~~~a 265 (535)
.+.+..++|+..++-.... |..+...-...+.+.|++++|+.+|+.+.+.+.+- |...-..++.+-.. -.+
T Consensus 90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV 161 (652)
T ss_pred HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH
Confidence 4679999999999832222 33366666778889999999999999998886431 22222222221111 111
Q ss_pred HHHHHHhHhCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-------------CCcc-hHHHHHHHHHh
Q 009424 266 EGVFELMKVDKAVNPN--WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-------------RDRV-PYHYLLSLYGS 329 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------~~~~-~~~~li~~~~~ 329 (535)
. +.+... ..|+ ...+-.....+...|++.+|+++++...+-+.+ -+.. .-.-+.-.+-.
T Consensus 162 ~-~~q~v~----~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVP----EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhcc----CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 222222 2232 222222344577899999999999988332111 0111 11223445677
Q ss_pred cCCHHHHHHHHHHHHhhCCCCch----hhHHHHHHHHHhcCC-Hh-----------------------------------
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTN----LGYHAMISSLARIGD-IE----------------------------------- 369 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~-~~----------------------------------- 369 (535)
.|+.++|..++.......+. |. +.-|.++.. ..-.+ ++
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988775332 22 111111111 11111 00
Q ss_pred ----------hHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcccc
Q 009424 370 ----------GMEKIFEEWLSVKSSYDPRIANLMMSWYVK--EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437 (535)
Q Consensus 370 ----------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 437 (535)
.+.++-... -+..|. ..+..++....+ .....+|..++...-+....-..+.--.++.....+|+
T Consensus 315 lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 011110000 111222 233333333322 22466677777766654333234555666777888999
Q ss_pred HHHHHHHHH--------HhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 438 ILEALSCLK--------GAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 438 ~~~A~~~~~--------~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
++.|++++. ... +.+..| .+...+...+.+.++-+.|..++...++
T Consensus 392 ~~~A~~il~~~~~~~~ss~~----~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSIL----EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhh----hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 999999998 555 334444 4556666777788887777777776653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.3e-06 Score=80.45 Aligned_cols=232 Identities=15% Similarity=0.109 Sum_probs=180.5
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 248 SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 248 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
.-..+...+...|-...|..+|+++. .|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 33456677788899999999998876 577789999999999999999888766 468888898888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
....-+++|.++++..... .-..+.......++++++.+.++.-.+..+- -..+|-.+-.+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHH
Confidence 7777899999999876442 0011111223478999999999987665533 5678888888999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
+.|.......+. +...||.+-.+|.+.++-.+|...++++. +.. .-+...|...+....+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAl----Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEAL----KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHh----hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998875433 67889999999999999999999999999 666 445678888888889999999999999998
Q ss_pred hcCCCC--ChhhHHHHHHHh
Q 009424 488 RQPGYR--KEKDYMSLIGLT 505 (535)
Q Consensus 488 ~~~~~~--~~~~~~~L~~~y 505 (535)
.+.... .+.+-..++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 765333 222444444444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00021 Score=71.59 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL 324 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 324 (535)
|...|.-.-.-.-..|++|.|+.+|...+. |-+++...|-.|+.++|-++-++- -|....-.+.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhla 974 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLA 974 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHH
Confidence 334444444445567777777777777652 445666666677777777776653 3555556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC---------------CHhhHHHHHHHHHhcCCCCCHHH
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG---------------DIEGMEKIFEEWLSVKSSYDPRI 389 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~ 389 (535)
+.|-..|++.+|+.+|.+.+. +...|+.|-.++ +.-.|-++|++. |. -
T Consensus 975 R~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~ 1037 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----Y 1037 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----h
Confidence 778888888888888776643 333333332222 122233333321 11 1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH--------HHHcCC--CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh------c-
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNS--------IIEEGG--KPNSTSWETLAEGHIRERRILEALSCLKGAFAA------E- 452 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~--------m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~- 452 (535)
...-+..|-+.|.+.+|+++--+ ++.+++ ..|+...+--.+.++.+.++++|..++-..++. .
T Consensus 1038 ~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1038 AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22345567777777777665321 222222 234555555555566666666666655443311 0
Q ss_pred ---------------cCCCCCCCHH----HHHHHHHHHHhcCChhhHHHHHH
Q 009424 453 ---------------GAKSWRPKPV----NVINFFKACEEESDMGSKEAFVA 485 (535)
Q Consensus 453 ---------------~~~g~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~ 485 (535)
+...-.|+.. .+..+...|.+.|++..|-+=|.
T Consensus 1118 ~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1118 NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 1111233333 45566667888888877765444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-05 Score=71.05 Aligned_cols=207 Identities=11% Similarity=0.029 Sum_probs=142.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC-
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVG-KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD- 367 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~- 367 (535)
.+...++.++|+.+.+++.+. .|+ ..+|+.--..+...| ++++++..++++....++.- .+|+.-...+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny-qaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY-QIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-HHhHHHHHHHHHcCch
Confidence 344456677777777777653 233 335555445555556 46788888888777655532 345544444445554
Q ss_pred -HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc---cc----HH
Q 009424 368 -IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE---RR----IL 439 (535)
Q Consensus 368 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~ 439 (535)
.+.+..+.+.+++...+ |..+|+....++.+.|+++++++.++++.+.++. |...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 25678888888877665 7888888888888889999999999999987766 777787776655543 22 35
Q ss_pred HHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhc----CChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 440 EALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEE----SDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+++++..+++ ...| |...|..+...+... +...+|.+++.+..+.++........|++.|++.
T Consensus 201 ~el~y~~~aI------~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 201 SELKYTIDAI------LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHH------HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 6788887777 3455 456777777777663 4456788899888887776666889999999753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00048 Score=62.24 Aligned_cols=312 Identities=10% Similarity=0.030 Sum_probs=182.1
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHH---HHHHHcCCHhHHHHHHHHHHHCCCCcCcchH-HHHHHHHHhc
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALL---NAYVRARMRGNAELLIDKMRDKGYAVHSLPY-NVMMTLYMKI 224 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~ 224 (535)
+...+...|++.+|+.-|....+ -|+..|-++. ..|...|+...|+.=+.+..+. +||-..- -.-...+.+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 34445556777777777777666 4444444443 4566777777777777766654 4553211 1112345677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
|.+++|..-|+..++.. |+..+ ...++.+.--.++-+.+ ...+..+.-.|+...|+..
T Consensus 120 Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l-----------------~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL-----------------VQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred ccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH-----------------HHHHHHHhcCCchhhHHHH
Confidence 77777777777777663 22111 11112111111111111 1222334456666667766
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
...+.+- ...|...+..-..+|...|++..|+.=++...+..... ..++.-+-..+...|+.+.++...++.++.+
T Consensus 178 i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKld-- 253 (504)
T KOG0624|consen 178 ITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLD-- 253 (504)
T ss_pred HHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--
Confidence 6666543 22455566666667777777777766666655543222 2344455556666777777776666665543
Q ss_pred CCHHH----HHH-------H--HHHHHHcCChhHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHccccHHHHHHHHHHh
Q 009424 385 YDPRI----ANL-------M--MSWYVKEGNFDKAEAFFNSIIEEGGKPNST---SWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 385 ~~~~~----~~~-------l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
||... |-. | +......+++.++..-.+...+..+..... .+..+-.++...|++.+|++...+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 33211 111 1 122345677777777777777654432223 3445556777889999999999999
Q ss_pred HHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 449 FAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 449 ~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
. .+.|| ..++.-=..|+.-..+++.|..-|+...+.+..++.
T Consensus 334 L------~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 334 L------DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred H------hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 9 57776 557766677888778888888888888777666554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=77.50 Aligned_cols=221 Identities=12% Similarity=0.060 Sum_probs=113.5
Q ss_pred HHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 153 IAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
+.+.|++.+|.-.|+..... +.+...|--|-...+.+++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 45556666666666655443 3345566666666666666666666666665543 223444445555555566666666
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 232 SMVSEMKEKGIR--------LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 232 ~~~~~m~~~g~~--------pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
..++.-.+...+ ++...-+. +.+.....+....++|-++....+..+|..+...|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 665554433210 00000000 11112222334445555544434433455555555555666666666666
Q ss_pred HHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 304 SLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 304 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
.|+.... ++| |..+||-|-..++...+.++|+..|++..+..|.--. ....|.-+|...|.+++|.+.|-.++
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6666654 233 3446666666666666666666666666664333222 22334445566666666665554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-05 Score=75.57 Aligned_cols=239 Identities=12% Similarity=0.098 Sum_probs=181.5
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM 218 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 218 (535)
+++-...-..+...+.++|-+..|..+|+++ ..|.-+|.+|...|+..+|..+..+-.++ +||...|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 4555666777888999999999999999865 46888999999999999999998887774 68888899988
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009424 219 TLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298 (535)
Q Consensus 219 ~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 298 (535)
+......-+++|.++++..-.+ .-..+-....+.++++++.+.|+.-.+-. +-...+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 8888888889999998765433 11112222234789999999998776543 44566888888889999999
Q ss_pred HHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 299 EKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
+.|.+.|..-.. ..|| ...||.+-.+|.+.++-.+|...+.+..+....+. ..|...+....+.|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHH
Confidence 999999988765 4555 45899999999999999999999999988764433 4566666777899999999999988
Q ss_pred HHhcCC-CCCHHHHHHHHHHHH
Q 009424 378 WLSVKS-SYDPRIANLMMSWYV 398 (535)
Q Consensus 378 ~~~~~~-~~~~~~~~~li~~~~ 398 (535)
+..... ..|..+...++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 875431 125555554444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0002 Score=67.16 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCh----hHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE---GNF----DKA 406 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A 406 (535)
++++.+++++.+..++ +...|+...-++...|+++++.+.++++++.++. |...|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 3445555455443222 2244444444555555555555555555554443 444444433333332 111 344
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHcc----ccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcC------
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRE----RRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEES------ 475 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g------ 475 (535)
..+..++....+. |...|+.+...+... ++..+|.+.+.+.. . ..| +...+..|+..+....
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~----~--~~~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL----S--KDSNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh----c--ccCCcHHHHHHHHHHHHhhhccchhh
Confidence 4555455544333 556666665555552 23345666666655 2 223 3344555555554321
Q ss_pred ------------ChhhHHHHHHHHh
Q 009424 476 ------------DMGSKEAFVALLR 488 (535)
Q Consensus 476 ------------~~~~a~~~~~~~~ 488 (535)
..++|.++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHH
Confidence 3466777777773
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-05 Score=70.32 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=26.2
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
..|.+.|++++|+..+++..+..+. -......+..+..++...|++++|..+++.+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPD--TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555421100 011234444555555555555555555554443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=70.90 Aligned_cols=166 Identities=14% Similarity=0.090 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc----chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR----VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL- 353 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~- 353 (535)
......+..+...|.+.|++++|...|+++.... |+. ..+..+..++.+.|++++|+..++++.+..+.....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456677888888899999999999999886643 332 356677788888999999999999998866654432
Q ss_pred -hHHHHHHHHHhc--------CCHhhHHHHHHHHHhcCCCCCHHHHH-----------------HHHHHHHHcCChhHHH
Q 009424 354 -GYHAMISSLARI--------GDIEGMEKIFEEWLSVKSSYDPRIAN-----------------LMMSWYVKEGNFDKAE 407 (535)
Q Consensus 354 -~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~li~~~~~~g~~~~A~ 407 (535)
++..+..++... |+.++|.+.++.+.+..+. +...+. .+...|.+.|++++|.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 344444444443 5667777777777665433 222221 2344556667777777
Q ss_pred HHHHHHHHcCCCCCH----hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 408 AFFNSIIEEGGKPNS----TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+++.. ...|+. ..+..+..++.+.|++++|..+++.+.
T Consensus 187 ~~~~~al--~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 187 NRFETVV--ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHH--HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7666644 334442 456667777777777777777776665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-05 Score=66.06 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=68.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCC--hhHH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW-YVKEGN--FDKA 406 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 406 (535)
.++.++++..++......+. +...|..+...|...|++++|...+++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554333 3345666666666666666666666666655543 55555555554 345555 3666
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666665444 55566666666666666666666666666
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.9e-05 Score=64.90 Aligned_cols=161 Identities=9% Similarity=0.080 Sum_probs=120.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
+..|.+.|+++.+..-.+.+.. +. . .+...++.+++...++..++..+. |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567788887776444322211 11 0 112356677888888888777655 899999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHH-Hcccc--HHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhh
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGH-IRERR--ILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGS 479 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~ 479 (535)
++|...|++....... +...+..+..++ .+.|+ .++|.+++++.. ...|+ ...+..+...+...|++++
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al------~~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKAL------ALDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH------HhCCCChhHHHHHHHHHHHcCCHHH
Confidence 9999999999987655 788888888764 67777 599999999999 45564 4567777778899999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 480 KEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
|...++++.+..+..+..+..+ +..
T Consensus 163 Ai~~~~~aL~l~~~~~~r~~~i-~~i 187 (198)
T PRK10370 163 AIELWQKVLDLNSPRVNRTQLV-ESI 187 (198)
T ss_pred HHHHHHHHHhhCCCCccHHHHH-HHH
Confidence 9999999999887766554433 544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.1e-05 Score=74.49 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=100.4
Q ss_pred cCHhHHHHHHH--HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CC--------Cc
Q 009424 141 LSASDAAIQLD--LIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDK-GY--------AV 209 (535)
Q Consensus 141 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p 209 (535)
.+..+-.++++ .|..-|+++.|.+-...+. +..+|..|.++|++.++++-|.-.+..|... |. .|
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 44555555554 5677899999888777774 6688999999999999999888887777542 21 12
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+ .+-.-+.-...+.|.+++|+.+|++.++.+ .|=+.|-..|.|++|.++-+.-.+ + .=..||..-.
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA 865 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYA 865 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHH
Confidence 2 222233334457888999999999888763 233456678899998887654331 1 1123555555
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 009424 290 TMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m 308 (535)
..+-..+|.+.|++.|++.
T Consensus 866 ~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHhhccHHHHHHHHHhc
Confidence 5555677888888887753
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-07 Score=53.82 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVH 210 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 210 (535)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455566666666666666666666655555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00057 Score=70.22 Aligned_cols=394 Identities=13% Similarity=0.004 Sum_probs=203.0
Q ss_pred chHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHH
Q 009424 72 KWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQL 150 (535)
Q Consensus 72 ~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li 150 (535)
.|..|-.-|....+.. .|...|+...+ +.+ |..........+++..+++.|..+.-..-+.. +...-...+-...
T Consensus 494 af~~LG~iYrd~~Dm~-RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMK-RAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcc
Confidence 3444444444444444 55555555443 333 34445566667777777777776622211111 0111111122233
Q ss_pred HHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH--HHHHhcCCh
Q 009424 151 DLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM--TLYMKIKEY 227 (535)
Q Consensus 151 ~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~ 227 (535)
-.|.+.++...|..-|+...+. +.|...|..+..+|.++|++..|.++|.+..... |+ .+|...- ..-+..|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhH
Confidence 3455666777777777766555 5577888888899999999999999998876653 32 2333222 223456788
Q ss_pred hHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhcCCCH-------hHHHHHHHHhHhCCCCCCCHHHHHHHHHHH--
Q 009424 228 DEVESMVSEMKEKG------IRLDVYSYNIWLSSCGSQGST-------EKMEGVFELMKVDKAVNPNWTTFSTMATMY-- 292 (535)
Q Consensus 228 ~~a~~~~~~m~~~g------~~pd~~~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-- 292 (535)
.+++..+......- ..--..++--+...+...|-. +++++.|.-...+. ...+...|-.+-+++
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~-~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS-LQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHhHHHHH
Confidence 88888777665431 000111221122222222222 22333332222211 112222222222211
Q ss_pred ---------------------HhcCCH---H---HHHHHHHHHHhcccCCCcchHHHHHHHHHh----cC----CHHHHH
Q 009424 293 ---------------------IKMGQV---E---KAEESLRRVESRITGRDRVPYHYLLSLYGS----VG----KKEEVY 337 (535)
Q Consensus 293 ---------------------~~~g~~---~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g----~~~~a~ 337 (535)
-+.+.. | -+.+.+-.-.+ ...+..+|..+...|.+ .| +...|+
T Consensus 726 f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 726 FSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 111111 1 01111111000 11234455444443333 11 234566
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009424 338 RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 417 (535)
..+....+.... +..+|+.+.-. ...|.+.-+.-.|-.-....+. ...+|..+.-.+.+..+++-|...|...+...
T Consensus 804 ~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 804 RCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 666665553221 33556555444 5556666666665554443332 56677777777888889999999999888765
Q ss_pred CCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh
Q 009424 418 GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 418 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~ 479 (535)
+. |...|--........|+.-++..+|..-.+.....|-.|+..-|.....-....|+.++
T Consensus 881 P~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 881 PL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred ch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 44 67778776666667888888888888744333355556666656555555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00049 Score=70.68 Aligned_cols=360 Identities=11% Similarity=-0.033 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 009424 122 YKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLID 200 (535)
Q Consensus 122 ~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 200 (535)
...++..|=+..+.. +.-...+..+.+.|+...+...|.+.|+...+. ..|...+....+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 455555555555543 334567888899999888999999999998776 4577889999999999999999999843
Q ss_pred HHHHCC-CCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC
Q 009424 201 KMRDKG-YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN 279 (535)
Q Consensus 201 ~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 279 (535)
.--+.. ...-...|....-.|.+.++...++.-|+...+..+ -|...|..+..+|..+|.+..|.++|.+... +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL---LR 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cC
Confidence 322221 000112344444556778888899999988887753 4788899999999999999999999988774 24
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcc------cCCCcchHHHHHHHHHhcCCHHHHHHHHHH-------HHh
Q 009424 280 PNWT-TFSTMATMYIKMGQVEKAEESLRRVESRI------TGRDRVPYHYLLSLYGSVGKKEEVYRVWNL-------YRS 345 (535)
Q Consensus 280 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------m~~ 345 (535)
|+.. .---...+-+..|.+.+|...+......- ..--..++..+...+...|-..++..+++. ...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4432 22222334566788888888887764321 111111222222233333333333333332 211
Q ss_pred hCCCCchhhHHHHHHHH-----------------------HhcCCH---h---hHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 346 VFPGVTNLGYHAMISSL-----------------------ARIGDI---E---GMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~-----------------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
.....+...|-.+-++| -..+.. + .|.+.+-.-. ....+...|..+..-
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHH
Confidence 11111112222222222 111111 1 0111111100 011123334333333
Q ss_pred HHH----cC----ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 397 YVK----EG----NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 397 ~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
|.+ +| +...|...+.......-. +..+|+.|.-. ..-|++.-|...|-+.. . -.+-+..+|..+-
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~----~-sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSR----F-SEPTCHCQWLNLG 857 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhh----h-ccccchhheeccc
Confidence 322 22 223566777666653222 67777776655 55566666666666555 1 1233456777777
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCChhh
Q 009424 469 KACEEESDMGSKEAFVALLRQPGYRKEKD 497 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 497 (535)
-.|....+++.|...|.......|.+...
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~ 886 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQ 886 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHH
Confidence 77777888888888888887777765543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.1e-05 Score=63.68 Aligned_cols=90 Identities=9% Similarity=-0.074 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcccc
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 437 (535)
....+...|++++|...|.......+. +...|..+..++.+.|++++|...|++..+.++. +...|..+..++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 344444455555555555554443322 4444445555555555555555555555543322 44444445555555555
Q ss_pred HHHHHHHHHHhH
Q 009424 438 ILEALSCLKGAF 449 (535)
Q Consensus 438 ~~~A~~~~~~m~ 449 (535)
+++|++.|+...
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00025 Score=74.25 Aligned_cols=201 Identities=11% Similarity=0.069 Sum_probs=111.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS-YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM 288 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 288 (535)
+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------hh
Confidence 4556777888888888888888888766554 344332 22222245555554444443 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI 368 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 368 (535)
++......++.....+...|.+.+ -+...+..+..+|-+.|+.+++..+|+++.+..+. +....|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 222333333333333333443321 22335666777777778888888888877775422 345667777777777 77
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------------------CCCHhHHHHHH
Q 009424 369 EGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-------------------KPNSTSWETLA 429 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------------~p~~~~~~~li 429 (535)
++|++++.+++.. |...+++..+..+|.++.+..+ ..-+.++-.+-
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 7777777766543 4444455555555555554321 11223333333
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|-..++|++++++++.+.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHH
Confidence 44555555555555555555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-06 Score=52.20 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.5e-05 Score=62.25 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAA 451 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (535)
..++++.++. ++..+..+...+...|++++|...|+......+. +...|..+...+.+.|++++|+..|+.+.
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-- 85 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHAL-- 85 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH--
Confidence 3455555443 3334556778889999999999999999986554 78899999999999999999999999999
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 452 EGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 452 ~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
...| +...+..+..++...|+.++|...++..++..+.....+......
T Consensus 86 ----~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 86 ----MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred ----hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445 556788888889999999999999999999988876655444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00042 Score=71.84 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=99.6
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
.+...+..|.....+.|..++|..+++...+..|.. ......+...+.+.+++++|....++.....+. +......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 456677777788888888888888888887743332 245667777788888888888888888776654 667777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.++.+.|++++|..+|++....+.. +..++..+..++...|+.++|...|+++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888888874332 47778888888888888888888888887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.001 Score=63.37 Aligned_cols=196 Identities=15% Similarity=0.048 Sum_probs=111.1
Q ss_pred HhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 159 VASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 159 ~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
+.+++..-+.++.. .++...+...+.+......-..+-.++.+-.+.+ -...+--..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHHH
Confidence 44445455555443 3455555555554444333333333333322211 1222333333444667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009424 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRIT 313 (535)
Q Consensus 235 ~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 313 (535)
+.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|+..+|..+++......
T Consensus 330 ~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 330 QPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 776665 2234444445556677777777777777777642 344 5556666777777777777777777765442
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 314 GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
+-|...|..|.++|...|+..++..-..+... ..|+++.|...+....+
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQ 453 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHH
Confidence 34666777777777777777777666665532 34566666666655544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00029 Score=61.49 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=110.2
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh
Q 009424 250 NIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329 (535)
Q Consensus 250 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (535)
.-+-..+...|+-+....+....... -+.|.......+....+.|++..|...|.+...- -++|..+|+.+--+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence 44555666677777777666665432 2556666666777777788888888888777642 33566678888788888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAF 409 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 409 (535)
.|+.++|..-|.+..+..+.-+ ..++.+.-.+.-.|+.+.|..++......+.. |..+-..+.-.....|++++|.++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p-~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEP-SIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCc-hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888877777544432 45677777777778888888888877655443 666777777777788888888877
Q ss_pred HHHH
Q 009424 410 FNSI 413 (535)
Q Consensus 410 ~~~m 413 (535)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00052 Score=71.97 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSL 326 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 326 (535)
..+-.+..+|-+.|+.+++..+++++.+-. +.|..+.|.+...|+.. ++++|.+++.+....
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 455556666666666666666666666432 44566666666666666 666666666655332
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChhH
Q 009424 327 YGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV-KSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
|...+++.++.++|.++....+ +. ++.-.++.+.+... +..--..++--+-..|....++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~--~d---------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNS--DD---------------FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCc--cc---------------chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 4444555555555555554221 11 11112222222221 222233444455566666777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 406 AEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+..+++.+.+...+ |.....-++..|.
T Consensus 242 ~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 77777777765444 5555555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=51.50 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCc
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAV 209 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 209 (535)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0004 Score=72.00 Aligned_cols=206 Identities=10% Similarity=-0.038 Sum_probs=148.1
Q ss_pred HHHHhcCChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 219 TLYMKIKEYDEV-ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297 (535)
Q Consensus 219 ~~~~~~g~~~~a-~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 297 (535)
.+.+.-|..++| .+++.+.. .++...+.......+.--.....++ ...+...+-.|.....+.|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAAHR 101 (694)
T ss_pred HHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCC
Confidence 344555665555 34443332 2333344434444444333333333 36678899999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 298 VEKAEESLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
+++|..+++...+ ..||.. .+..+...+.+.+++++|+..+++.....+.. ......+..++.+.|+.++|..+|+
T Consensus 102 ~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 102 SDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-AREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred cHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999977 456654 67778899999999999999999998854442 2566788889999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++...+.. +..++..+..++.+.|+.++|...|+...+. ..|....|+.++ ++...-..++++..
T Consensus 179 ~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 179 RLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 99984433 5889999999999999999999999999874 223455555544 34444555666655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00093 Score=63.57 Aligned_cols=208 Identities=13% Similarity=0.036 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 227 YDEVESMVSEMKEKG--IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+.++.+.-+.|...+ -.|+...+...+.+......-..+...+.+..+ +-....+-...-.+...|+.++|+..
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK----RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC----ccchHHHHHHHHHHHHhcccchHHHH
Confidence 344444444443322 234555555555544443333333333333332 11222333334446678889999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
++.+... .+-|...+......+...++.++|.+.++++....+.. ....-.+..++.+.|++.+|..+++......+.
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9988764 22345555666788889999999999999988855543 345567788888999999999999888766554
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~ 464 (535)
|+..|..|..+|...|+..+|.... ..+|...|++++|+..+....+ .++++..+|
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~-----~~~~~~~~~ 462 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ-----QVKLGFPDW 462 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH-----hccCCcHHH
Confidence 8889999999999999887776543 3456678889999988888873 234454444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00031 Score=61.34 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 009424 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI 365 (535)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 365 (535)
.-+-..+...|+-+....+....... ...|.......+....+.|++.+|+..|++.....+ +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 44455555666666666665554321 122333444466666666777777777776665321 2335666666667777
Q ss_pred CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHH
Q 009424 366 GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCL 445 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 445 (535)
|+++.|..-|.+..+.... ++...|.+.-.|.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777666666655433 4555666666666667777777766666654333 5555555566666666666666655
Q ss_pred HHh
Q 009424 446 KGA 448 (535)
Q Consensus 446 ~~m 448 (535)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0016 Score=57.07 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=104.4
Q ss_pred HHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 304 SLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
+.+.+.......+.+....-...|.+.|++++|++....... . .....=+..+.+..+++.|.+.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----l--E~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----L--EAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 334443333333323333334567777777777777665211 1 122222334456667777777777776543
Q ss_pred CCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC
Q 009424 384 SYDPRIANLMMSWYVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
+..+.+-|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..+++++. +.. .-
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL----~kd-~~ 239 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL----DKD-AK 239 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH----hcc-CC
Confidence 44555555555544 45677788888888763 45677777777777788888888888888887 332 33
Q ss_pred CHHHHHHHHHHHHhcCCh-hhHHHHHHHHhcCCCCC
Q 009424 460 KPVNVINFFKACEEESDM-GSKEAFVALLRQPGYRK 494 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~ 494 (535)
++.|+..++-.....|.. +.-.+.+.++....+..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 456666666655555544 44455666666555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0013 Score=57.53 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=122.0
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
+.+.+.......+......-...|++.|++++|.+..... - +......=+..+.+..+++-|.+.++.|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 3344444333333333334445688999999999988752 1 4444444456677888999999999999973
Q ss_pred CCCHhHHHHHHHHHHc----cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 419 KPNSTSWETLAEGHIR----ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
-+..|.+.|..++.+ .+...+|.-+|++|- ....|+..+.+....+|...|++++|..+++.........
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s-----~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS-----EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 266777777777754 356899999999998 2478999999999999999999999999999999887776
Q ss_pred hhhH-HHHHHHhHhhhhcccccCCCCCChhHHHHHHhhhh
Q 009424 495 EKDY-MSLIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQF 533 (535)
Q Consensus 495 ~~~~-~~L~~~y~~~~~~~~~~~~i~~~~~~~~l~~~l~~ 533 (535)
+.+. |.++-+. +.-.+++.+.+.++||+.
T Consensus 241 petL~Nliv~a~----------~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLAL----------HLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHH----------HhCCChHHHHHHHHHHHh
Confidence 6543 4444444 233445566677777654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-06 Score=50.04 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL 244 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 244 (535)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.5e-05 Score=60.63 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
..+...+...|+.++|.+.++.+...++. +...+..+...|.+.|++++|..+++...+.+.. +...|..+...|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 34444445555555555555555444322 4455555555555555555555555555443322 344444455555555
Q ss_pred ccHHHHHHHHHHhH
Q 009424 436 RRILEALSCLKGAF 449 (535)
Q Consensus 436 g~~~~A~~~~~~m~ 449 (535)
|++++|++.|+...
T Consensus 99 g~~~~A~~~~~~al 112 (135)
T TIGR02552 99 GEPESALKALDLAI 112 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0015 Score=56.83 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=117.2
Q ss_pred cCCCCccHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhC
Q 009424 83 MDNPQLGSASVLNDWEKG---G-RSLTKWE-LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVH 157 (535)
Q Consensus 83 ~g~~~~~a~~~~~~m~~~---g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g 157 (535)
..+++ +.++++.++... | ..++.++ |..++-+....++.+.|...++.+... ++.+..+...-...+-..|
T Consensus 25 ~rnse-evv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~---fp~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 25 VRNSE-EVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR---FPGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccCHH-HHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhh
Confidence 34666 888888888543 5 6677776 567777777888889999988887766 4555555444444555667
Q ss_pred CHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHH
Q 009424 158 GVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 158 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 236 (535)
.+++|.++++.+.+. +.|.+++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++
T Consensus 101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 777777777776665 345566665555555566666666666665553 345667777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcC---CCHhHHHHHHHHhHh
Q 009424 237 MKEKGIRLDVYSYNIWLSSCGSQ---GSTEKMEGVFELMKV 274 (535)
Q Consensus 237 m~~~g~~pd~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 274 (535)
+.-.. +.+..-+..+...+.-. .+++.++++|.+..+
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66542 22333333333333222 244556666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00015 Score=59.07 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=92.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG 453 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (535)
.++.+....+. +......+...+...|++++|...|+.....+.. +...|..+...+...|++++|...++...
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~---- 78 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAA---- 78 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 45555554433 4556677888899999999999999999886544 78889999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 454 AKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 454 ~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
... ..+...+..+...+...|++++|...++...+..+....
T Consensus 79 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 79 ALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 222 334567777777899999999999999999998766544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.6e-06 Score=48.05 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKG 206 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 206 (535)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.031 Score=57.50 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=127.7
Q ss_pred cccccccccccccccchHHHHHHH--hccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHh
Q 009424 57 IHSYGTVDFERRPMIKWNAIFRKL--SLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNN 134 (535)
Q Consensus 57 ~~~~~~~~~~~~~~~~~n~li~~~--~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 134 (535)
+..+|.+---.||. .|..++.++ .|.|..+ +|..+++.....+.. |..|...+-..|.+.+..+++..+|++..+
T Consensus 29 l~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~-ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 29 LAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGD-EALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCch-hHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44555554444554 456666666 4668888 888777777655444 777888888888888888888888888877
Q ss_pred cCCCcccCHhHHHHHHHHHHhhCCHhh----HHHHHhhCCCCCCCHHHHHHHHHHHHHcCC----------HhHHHHHHH
Q 009424 135 RGERFRLSASDAAIQLDLIAKVHGVAS----AEDFFLSLPDTLKDRRVYGALLNAYVRARM----------RGNAELLID 200 (535)
Q Consensus 135 ~g~~~~~~~~~~~~li~~~~~~g~~~~----A~~~f~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~ 200 (535)
.. |+......+..+|.+.+.+.+ |.+++...++ +...+=++++.+.+.-. ..-|.+.++
T Consensus 106 ~~----P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 106 KY----PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred hC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 64 236666777777777776654 5556655554 44433344454444311 233555666
Q ss_pred HHHHCC-CCcCcchHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 201 KMRDKG-YAVHSLPYNVMMTLYMKIKEYDEVESMVS-EMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 201 ~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
.+.+.+ ---+..-...-...+...|++++|++++. ...+.-..-+...-+--+..+...+++.+-.++-.++...
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 665543 11111112222334456677888888883 3333333445555556677778888888888887777754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.009 Score=52.10 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=74.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
-+....|+.+.|...++.+....+....+ -..-.--+-..|++++|.++++.+++..+. |..++-.=+-..-..|+--
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV-~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRV-GKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcH
Confidence 33444455555555555555543322211 000111122345555556665555554422 4444444444444455555
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhc---CChhhH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEE---SDMGSK 480 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~---g~~~~a 480 (535)
+|++-+....+. +.-|...|.-+...|...|++++|.-.++++. =+.|-.. .|..+.....-. .+++.+
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l------l~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL------LIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH------HcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555554443 22256666666666666666666666666655 2344332 222332222222 235555
Q ss_pred HHHHHHHhcCCC
Q 009424 481 EAFVALLRQPGY 492 (535)
Q Consensus 481 ~~~~~~~~~~~~ 492 (535)
++++.+.++..+
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 566666555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=66.79 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=54.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 009424 326 LYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
.+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+.++..+. +......-...|.+.++.+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 3333444455555555544432 11 1223344444444444555555544433222 34444444444555555555
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|+.+.+++.+..+. +..+|..|..+|.+.|++++|+..++.+.
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555543221 33455555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00046 Score=66.13 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
..-.+|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..+.. +-|...+....+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556666667788999999999988874 43 45557777878888888888888888653 33666666667778
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.+.++.+.|.++.+++.+. .+.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888889999998888853 23444588889999999999999988888763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00037 Score=57.57 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChhH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP--RIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 405 (535)
.++...+...++.+...++...- ...-.+...+...|++++|...|+.+......++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555665566666554443321 22223345556666666666666666655422221 233345556666666666
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHh
Q 009424 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
|+..++...... .....+......|.+.|++++|...|+.+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666665533221 13334555556666666677666666653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.3e-05 Score=46.07 Aligned_cols=31 Identities=32% Similarity=0.717 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGI 242 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 242 (535)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=60.29 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=68.9
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC------------
Q 009424 163 EDFFLSLPDTLKDRRVYGALLNAYVRA-----RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK------------ 225 (535)
Q Consensus 163 ~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------ 225 (535)
...|++.....+|..+|..+|+.|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 445555533347888888888888754 677777778888888898889999999888775421
Q ss_pred ----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 226 ----EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 226 ----~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
+-+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 224566666666666666666666666666655554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0003 Score=67.68 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=84.6
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 314 GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF--PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
.-+.+....++..+....+++++..++.+.+... ...-..|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3455566667777777777777777777776642 11222455677888888888888888877777777778888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877777655555666666656555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=68.86 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=89.6
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN 215 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 215 (535)
+.+......+++......+++.+..++.+.... .--..+..++|..|.+.|..++++.+++.=...|+-||..|+|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555666666665554433 0112345689999999999999999999888999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 009424 216 VMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ 259 (535)
Q Consensus 216 ~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 259 (535)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988887777777777777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00033 Score=52.67 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CcCcchHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGY-AVHSLPYNVMMTLYMKIK--------EYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
+-...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-+.+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677888888999999998888 888999999888877653 23467788888888888888888
Q ss_pred HHHHHHHHhc
Q 009424 249 YNIWLSSCGS 258 (535)
Q Consensus 249 ~~~ll~~~~~ 258 (535)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876644
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00055 Score=54.25 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C-CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-P-NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PVN 463 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~~ 463 (535)
+..+...+.+.|++++|.+.|+.+...... | ....+..+...+.+.|++++|.+.|+.+.. ..|+ ...
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~ 78 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK------KYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH------HCCCCCcccHH
Confidence 344455555566666666666655543211 0 123344455556666666666666666551 1122 233
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+..+..++.+.|+.++|.+.++++++..+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 444445555566666666666666655554433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00055 Score=56.51 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=39.7
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDTLKDR----RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK 225 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 225 (535)
...+...|++++|...|+.+....+|. ...-.|...+...|++++|+..++......+ ....+....+.+.+.|
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCC
Confidence 344444455555555554444332222 1233344555555555555555544332222 2233444555555566
Q ss_pred ChhHHHHHHHH
Q 009424 226 EYDEVESMVSE 236 (535)
Q Consensus 226 ~~~~a~~~~~~ 236 (535)
+.++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00043 Score=64.10 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh-hCCHhhHHHHHhhCCCC-CCCHHHHHHHHH
Q 009424 107 WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK-VHGVASAEDFFLSLPDT-LKDRRVYGALLN 184 (535)
Q Consensus 107 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~-~~~~~~~~~li~ 184 (535)
.+|..+++.+-+.+..+.|+++|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+...+. ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 356667777777777778888887777544 2333444444444233 35555577777776554 556777777777
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcCc---chHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVHS---LPYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
.+.+.|+.+.|+.+|++.... +.++. ..|...+..=.+.|+.+.+.++..++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777788888888888777654 22222 36777777777777777777777777665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=61.21 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTL-YMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
+|-.++...-+.+..+.|+.+|.+.++.+ .-+...|...... |...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555554322 0111112211111 11123334455555554443 233444444444555
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNW---TTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.+.++.+.|+.+|+..... +.++. ..|...+..=.+.|+++.+.++.+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555554432 11111 244444444444455554444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=10.1
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHh
Q 009424 424 SWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
++..+...+...|++++|.+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333444444444444444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00087 Score=50.17 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
++..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++... ... ..+..++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKAL----ELD-PDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCC-CcchhHHHHHH
Confidence 3556677788899999999999998875333 44678888889999999999999999988 322 23345777888
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCC
Q 009424 469 KACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
..+...|+++.|...+....+..+
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCC
Confidence 889999999999999998887654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0014 Score=63.03 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=59.6
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
.+...|+++.|...+.++++.... +...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344556666666666666655443 4555566666666666666666666666654332 45556666666666666666
Q ss_pred HHHHHHHhHHhccCCCCCCCHHHHHHHHHHH
Q 009424 441 ALSCLKGAFAAEGAKSWRPKPVNVINFFKAC 471 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~ 471 (535)
|+..|+++. .+.|+...+...+..|
T Consensus 89 A~~~~~~al------~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGA------SLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH------HhCCCCHHHHHHHHHH
Confidence 666666666 3445554444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0035 Score=53.43 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYD--PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33334444444444444444444443322211 234444444555555555555555544443221 233344444444
Q ss_pred Hcccc
Q 009424 433 IRERR 437 (535)
Q Consensus 433 ~~~g~ 437 (535)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.013 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=10.2
Q ss_pred HHHHHHHccccHHHHHHHHHHhH
Q 009424 427 TLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-+...+.+.|++++|+++|++..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444445555555554443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=50.04 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKS-SYDPRIANLMMSWYVKEG--------NFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
.|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33444444555555555555555555 455555555555544432 122333444444444444444444444
Q ss_pred HHHH
Q 009424 429 AEGH 432 (535)
Q Consensus 429 i~~~ 432 (535)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4433
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0044 Score=48.93 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSY--DPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..++.+.|+++.|...++.+....+.. ...++..+..++.+.|+.++|.+.++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444443322110 122333444444444444444444444444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=58.76 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009424 327 YGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
..+.+++.+|+..|.+.....+. +.+-|..=..+|++.|..+.|.+=-+..+..... -...|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 33445555555555555543222 2234444445555555555555544444333221 234455555555555555555
Q ss_pred HHHHHHHHH
Q 009424 407 EAFFNSIIE 415 (535)
Q Consensus 407 ~~~~~~m~~ 415 (535)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555554444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0004 Score=51.12 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCCh
Q 009424 400 EGNFDKAEAFFNSIIEEGGK-PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDM 477 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~ 477 (535)
.|+++.|+.+|+++.+.... |+...|-.+..+|.+.|++++|++++++ . ...|+. .....+..++...|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~------~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L------KLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H------THHHCHHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h------CCCCCCHHHHHHHHHHHHHhCCH
Confidence 35566666666666554331 1333444456666666666666666655 3 122222 2222334455566666
Q ss_pred hhHHHHHHH
Q 009424 478 GSKEAFVAL 486 (535)
Q Consensus 478 ~~a~~~~~~ 486 (535)
++|.+++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.036 Score=50.06 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVP--YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL 362 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 362 (535)
+-.....+.+.|++++|.+.|+.+...-+...... .-.+..+|.+.+++++|+..+++..+..|..+..-+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33344456678889999999988876433221111 1235577788889999999999988877776666665555554
Q ss_pred HhcCCHhhHHHHHHHHHhc-CCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 363 ARIGDIEGMEKIFEEWLSV-KSSYDP-------RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+.... ....+...... ....|. ..+..+|+-|-...-..+|...+..+.+. =...--.+..-|.+
T Consensus 115 ~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~ 187 (243)
T PRK10866 115 TNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTK 187 (243)
T ss_pred hhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 42100 00011100000 000010 12334444444445556666555555431 11111245566889
Q ss_pred cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 435 ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
.|.+..|+.-++.+.+.-+ +..........+..++...|..++|..+...+.
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp--~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYP--DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred cCchHHHHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 9999999999999984221 222344567778889999999999998877654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00028 Score=51.89 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=37.0
Q ss_pred CCHhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 366 GDIEGMEKIFEEWLSVKSS-YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544332 1333334455555555555555555555 211111 222333334555556666666655
Q ss_pred HHH
Q 009424 445 LKG 447 (535)
Q Consensus 445 ~~~ 447 (535)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0036 Score=60.16 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACE 472 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~ 472 (535)
...+...|++++|+..|++..+.... +...|..+..+|.+.|++++|+..++++. .+.| +...|..+..+|.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al------~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAI------ELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCcCCHHHHHHHHHHHH
Confidence 45566789999999999999987655 78888899999999999999999999999 3456 4557777888999
Q ss_pred hcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
..|++++|...+++.++.++........+..+
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999988776654444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.01 Score=59.68 Aligned_cols=143 Identities=10% Similarity=0.047 Sum_probs=82.3
Q ss_pred cCCCcchHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC--------CHhhHHHHHHHHH
Q 009424 313 TGRDRVPYHYLLSLYGSVG-----KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG--------DIEGMEKIFEEWL 379 (535)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~ 379 (535)
...|...|...+++..... ..+.|+.+|++..+..|.- ...|..+..++.... ++..+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4456677777777654432 2667888888887744332 133333333222211 1223333333322
Q ss_pred hcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCC
Q 009424 380 SVK-SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWR 458 (535)
Q Consensus 380 ~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~ 458 (535)
... ...++..|.++.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++++. .+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~------~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF------NLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hcC
Confidence 221 22345566666555566677777777777777643 566677777777777777777777777777 455
Q ss_pred CCHHHH
Q 009424 459 PKPVNV 464 (535)
Q Consensus 459 p~~~~~ 464 (535)
|...||
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 655554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0039 Score=52.96 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSY--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
.+..+...+...|++++|...++........+ ...++..+...|.+.|+.++|+..+++....... ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34455555556666666666666665443222 1235566666666667777777766666653221 23444444444
Q ss_pred HH-------ccccHHHHHHHHHH
Q 009424 432 HI-------RERRILEALSCLKG 447 (535)
Q Consensus 432 ~~-------~~g~~~~A~~~~~~ 447 (535)
+. ..|++++|+..+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 44 55665544444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0049 Score=60.56 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
+...-+++|+++|-.|+... +...++-.|++.+|-++|.+ .|.. +-.+.+|.....+|.|.++...-.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 44445667788887676543 34556667888888888753 3322 123344444444444444332110
Q ss_pred ---------hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 274 ---------VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 274 ---------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 344 (535)
++.....|+.-=.+...++...|+.++|..+ +..+|-.+-++++-+++.
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i----------------------~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEI----------------------CGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhh----------------------hhcccHHHHHHHHHhhcc
Confidence 0000000000001122233333433333322 223333344444433332
Q ss_pred hhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhH
Q 009424 345 SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTS 424 (535)
Q Consensus 345 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 424 (535)
.. +..+...+..-+-+...+..|-++|..|-.. ..++++....+++++|..+-++..+. .||+..
T Consensus 744 ~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~ 808 (1081)
T KOG1538|consen 744 KA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYM 808 (1081)
T ss_pred hh----hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccc
Confidence 21 2234444444555666677777777766321 24667777788888888887776653 333321
Q ss_pred -----------HHHHHHHHHccccHHHHHHHHHHhH
Q 009424 425 -----------WETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 425 -----------~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|...-.+|.++|+-.||.++++++.
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3334467788888888888888876
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.019 Score=57.91 Aligned_cols=142 Identities=10% Similarity=-0.010 Sum_probs=101.8
Q ss_pred CCCchhhHHHHHHHHHhcC-----CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHH
Q 009424 348 PGVTNLGYHAMISSLARIG-----DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG--------NFDKAEAFFNSII 414 (535)
Q Consensus 348 ~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~ 414 (535)
+..+...|...+.+..... +.+.|..+|+++++..+. ....|..+..+|.... ++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3445577888888765433 377899999999887654 4555555544443321 2234444444433
Q ss_pred Hc-CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 415 EE-GGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 415 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.. ....+...|.++.......|++++|...++++. .+.|+...|..+...+...|+.++|.+.+++....++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl------~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI------DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 32 123355778888777777899999999999999 45688888999999999999999999999999999888
Q ss_pred Chh
Q 009424 494 KEK 496 (535)
Q Consensus 494 ~~~ 496 (535)
.+.
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.022 Score=48.53 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc--hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT--NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
+..+...+...|++++|+..|++.....+.++ ...+..+...+.+.|++++|...+.+..+..+. +...+..+..+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33444444455555555555555544333322 134455555555566666666666555544322 344444455555
Q ss_pred HHcCChh
Q 009424 398 VKEGNFD 404 (535)
Q Consensus 398 ~~~g~~~ 404 (535)
...|+..
T Consensus 117 ~~~g~~~ 123 (172)
T PRK02603 117 HKRGEKA 123 (172)
T ss_pred HHcCChH
Confidence 5555433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.03 Score=45.71 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.+..-+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 3444445666666666666666554433 4455555666666666666666666666655443 5555555666666666
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
+.+.|.+.|+..+
T Consensus 118 ~~~~A~~aF~~Ai 130 (157)
T PRK15363 118 NVCYAIKALKAVV 130 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.033 Score=51.79 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC---CCc--hhhHHHHHHHHH
Q 009424 290 TMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV-GKKEEVYRVWNLYRSVFP---GVT--NLGYHAMISSLA 363 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~ 363 (535)
..|...|++..|-+++..+- ..|-.. |++++|++.|++...... .+. ...+..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 34566666666655555442 233344 566666666665543211 111 134455566666
Q ss_pred hcCCHhhHHHHHHHHHhcCCCC-----CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCC--HhHHHHHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSY-----DPR-IANLMMSWYVKEGNFDKAEAFFNSIIEEG--GKPN--STSWETLAEGHI 433 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~~~ 433 (535)
+.|++++|.++|+++....... +.. .+...+-++...|++..|.+.|++..... +..+ ......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7777777777777665433221 111 12222334445667777777777665431 2111 223344455553
Q ss_pred c--cccHHHHHHHHHHhH
Q 009424 434 R--ERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~--~g~~~~A~~~~~~m~ 449 (535)
. ...+++|+.-|+.+.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 3 223455555555444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.26 Score=49.54 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 009424 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271 (535)
Q Consensus 243 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 271 (535)
+-|....-.+.+++...|.-++|.+.|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 34455555566666666666666655533
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0088 Score=50.79 Aligned_cols=65 Identities=8% Similarity=-0.112 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV 346 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 346 (535)
...|..+...+...|++++|...|++.......+. ..+|..+...|...|+.++|+..++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455555566666666666666666654322211 225555566666666666666666665553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=45.69 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=25.9
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.|++++|.++|+++....+. +...+..+...|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555544333 44445555555555555555555555555
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0056 Score=52.34 Aligned_cols=34 Identities=12% Similarity=-0.007 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 438 ILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 438 ~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
-+-|++++++|. ..|+-||..|+..++..+.+.+
T Consensus 119 q~c~i~lL~qME----~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQME----NNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHH----HcCCCCcHHHHHHHHHHhcccc
Confidence 345666666666 6666666666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.16 Score=50.91 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=60.6
Q ss_pred CHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-CCCCc--------CcchHHHHHHHHHhcCChh
Q 009424 158 GVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRD-KGYAV--------HSLPYNVMMTLYMKIKEYD 228 (535)
Q Consensus 158 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p--------~~~~~~~li~~~~~~g~~~ 228 (535)
.+++|.+..+.- |....|..+.....+.-.++.|...|-+... .|++. +...-.+=|.+| -|+++
T Consensus 678 gledA~qfiEdn----PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN----PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFE 751 (1189)
T ss_pred chHHHHHHHhcC----CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchh
Confidence 345555554433 4556676666655555556666665554433 12211 000001112222 36777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 229 EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 229 ~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
+|.++|-+|-++++ .|..+.+.|++-...++++.--.+..-.--...|+.+...++....+++|.+.|.
T Consensus 752 eaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred Hhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766655532 2444555555554444443211000000012244455544444444444444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0044 Score=55.44 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=99.8
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 439 (535)
.-..+.+++++|...|.++++..+. |.+.|..=..+|++.|.++.|++-.+.....+.. -..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4467889999999999999987765 7888888899999999999999999888875332 4678999999999999999
Q ss_pred HHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhc-CChh---hHHHHHHHHhcCCCCChh
Q 009424 440 EALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEE-SDMG---SKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~-g~~~---~a~~~~~~~~~~~~~~~~ 496 (535)
+|++.|++.. .+.|+..+|..-|+..... +... .+..-++.....|..|+.
T Consensus 167 ~A~~aykKaL------eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 167 EAIEAYKKAL------ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHhhh------ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999999 6899999988777655432 2222 344444444444543433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=46.66 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=98.6
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh--
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTF---STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS-- 329 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 329 (535)
.+...|++++|.+.|+.+.... +-+...- -.+..+|.+.+++++|...|++..+.-+.-..+-|...+.+.+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3455667777777777766432 2222222 23455666777777777777777664433333344444444331
Q ss_pred c---------------CC---HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 330 V---------------GK---KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 330 ~---------------g~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
. .+ ..+|+..|+.+.+..|.. .-..+|...+..+... =...--
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S---------------~ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS---------------QYTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC---------------hhHHHHHHHHHHHHHH----HHHHHH
Confidence 0 11 234556666666554432 2233444433333211 001112
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEE--GGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+...|.+.|.+..|..-|+.+.+. +-.........++.+|...|..++|.++.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4567788889999999999888873 223345566778889999999988888776554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.097 Score=45.92 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
...+...|++++|...|+.+....+... ....-.++.++.+.|++++|...++++....|..+..-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566777777777777765432211 12344556677777777777777777777666655444444443333221
Q ss_pred CHhhHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSY-----DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
...... .....+ -...+..++.-|-......+|...+..+.+. =...--.+...|.+.|.+..|
T Consensus 92 ~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 92 QIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred hCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence 111110 000000 0123344555555555666666655555431 111112355678888888888
Q ss_pred HHHHHHhHHhccCCCCCCCH----HHHHHHHHHHHhcCChhhHH
Q 009424 442 LSCLKGAFAAEGAKSWRPKP----VNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~----~~~~~ll~a~~~~g~~~~a~ 481 (535)
..-++.+.+. -|+. .....++.++.+.|..+.+.
T Consensus 161 ~~r~~~v~~~------yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 161 IIRFQYVIEN------YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH------STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH------CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888832 3333 35566777888888877444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.24 Score=46.51 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV 398 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 398 (535)
+.+..|.-+...|+...|.++-.+. -.|+..-|-..+.+++..++|++-.++-.. +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455555556555554443333 334445555666666666666555544321 113345555666666
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-.+..
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 666666666555441 11334555566666666655544333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.016 Score=47.31 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
..-.+...+...|++++|.++|+-+...++. +..-|-.|...+-..|++++|+..|..+. ... .-|+..+-.+-
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~----~L~-~ddp~~~~~ag 110 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAA----QIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcC-CCCchHHHHHH
Confidence 3344556677899999999999999886555 77788889999999999999999999999 333 23566777888
Q ss_pred HHHHhcCChhhHHHHHHHHhcCC
Q 009424 469 KACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.++...|+.+.|++.|+..+...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999999888664
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=45.21 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=21.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 397 YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.+.|++++|.+.|++..+..+. +...|..+...+.+.|++++|..+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444443222 33444444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.028 Score=46.38 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc-CCCCCCCHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG-AKSWRPKPVNV 464 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~g~~p~~~~~ 464 (535)
.+...++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|++.|+++.+... +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556677777888888888888888876554 778888888888888888888888888763322 45888877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.045 Score=48.07 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH-----H
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM-----S 395 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~ 395 (535)
+.++..+.-.|.+.-.+..+++..+..+..+......+.+.-.+.|+.+.|...|+...+..-..|....+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555555566666666666665555555555566666666666666666666555443333333333322 2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|.-.+++.+|...|.++...+.. |...-|.-.-...-.|+..+|++.+..|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 233345566666666666554332 33333333333334566666666666666
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.18 Score=42.10 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=70.2
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHhHHHHH
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-KPNSTSWETL 428 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l 428 (535)
|+...-..+..++...|+..+|...|++...--+.-|..+.-.+.++....+++.+|...++.+-+... .....+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344444456666666777777777776665443445666666666666666777777766666665321 0122233445
Q ss_pred HHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 009424 429 AEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
.+.|...|.+.+|...|+.+. ...|+...-...-..+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~------~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAI------SYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHH------HhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 566666677666776676666 34455443333333344445444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.063 Score=42.14 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHc
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY--DPRIANLMMSWYVKE 400 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 400 (535)
.++-..|+.++|+.+|++....|...+. ..+..+.+.+...|++++|..+++......+.. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555566666666655554444332 234455555566666666666666555432210 111222233344555
Q ss_pred CChhHHHHHHHHHH
Q 009424 401 GNFDKAEAFFNSII 414 (535)
Q Consensus 401 g~~~~A~~~~~~m~ 414 (535)
|+.++|.+.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0037 Score=43.81 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc-cHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER-RILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 449 (535)
..+|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555554332 4445555555555555 4555555555554
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0041 Score=43.39 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=42.1
Q ss_pred HHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHH
Q 009424 117 RKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGAL 182 (535)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~l 182 (535)
...|++++|.++++.+.+.. +.+..+...+..+|.+.|++++|.++++++....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35677888888888887765 4466666677777777777777777777776655554444443
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.068 Score=48.32 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG---NFDKAEAFFNSIIEEGGKPNSTSWETLA 429 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li 429 (535)
..|-.|...|...|+.+.|..-|....+...+ ++..+..+..++.... .-.++..+|+++...+.. |+.+...|.
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lLA 234 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLLA 234 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 34444444444444444444444444433221 3333333333322211 122344444444443222 334444444
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+...|++.+|...|+.|.
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 44444444444444444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.43 Score=45.60 Aligned_cols=133 Identities=5% Similarity=0.032 Sum_probs=90.5
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM 218 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 218 (535)
+.+...+-.||..|...|..++-+++++++... +--..+|..-|++=...+++.....+|.+.....+ +...|...+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 577889999999999999999999999999884 22346899999988888999999999999887643 567788888
Q ss_pred HHHHhcCChh------HHHHHHHHHHH-cCCCCCH-HHHHHH---HHHHhcCCCH------hHHHHHHHHhHh
Q 009424 219 TLYMKIKEYD------EVESMVSEMKE-KGIRLDV-YSYNIW---LSSCGSQGST------EKMEGVFELMKV 274 (535)
Q Consensus 219 ~~~~~~g~~~------~a~~~~~~m~~-~g~~pd~-~~~~~l---l~~~~~~g~~------~~a~~~~~~~~~ 274 (535)
+.-.+.+..- ...+.|+.... .++.|-. ..|+.. +..--..|.| |..+..+.++..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 7665554221 22333333333 4555533 334443 3333345554 455666777663
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.091 Score=41.24 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHH
Q 009424 218 MTLYMKIKEYDEVESMVSEMKEKGIRLD--VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATM 291 (535)
Q Consensus 218 i~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~ 291 (535)
..++-..|+.++|+.+|++....|+... ...+-.+-+.+...|++++|..+++...... |+ ......+.-+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHH
Confidence 3455566777777777777777665433 2234445556667777777777777666431 22 1122222334
Q ss_pred HHhcCCHHHHHHHHHHH
Q 009424 292 YIKMGQVEKAEESLRRV 308 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m 308 (535)
+...|+.++|.+.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55667777776666544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.46 Score=44.68 Aligned_cols=124 Identities=13% Similarity=0.166 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
+.+..|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-..+... +-+++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667788899999988877763 48999999999999999999988776442 112367899999999
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+.|+..+|..+...+ .+..-+.+|.++|++.+|.+.--+.. |......+...+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~ 302 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCP 302 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCC
Confidence 999999999888762 12567889999999999987754433 5555544444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.15 Score=44.99 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHH---
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLA--- 429 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--- 429 (535)
...++++..+...|.+.-...++.+.++.....++.....|..+-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34567788888888899999999999988877789999999999999999999999999887654444555555554
Q ss_pred --HHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHH
Q 009424 430 --EGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIG 503 (535)
Q Consensus 430 --~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~ 503 (535)
..|.-++++.+|...+.+..+ . .| |....+.-.-...-.|+...|.+.++.|.+..|.+..+-+.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~----~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILR----M--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred hhhheecccchHHHHHHHhhccc----c--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 335567789999999998882 2 22 22222222222345688999999999999988887654433333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.03 Score=51.02 Aligned_cols=107 Identities=7% Similarity=-0.020 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN--STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVI 465 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~ 465 (535)
..|...+..+.+.|++++|...|+.+.+..+.-. ...+-.+...|...|++++|...|+.+.+..++.... ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~--~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA--ADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--hHHHH
Confidence 3455555555666788888888888776533211 2455567777778888888888888887322111111 23344
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 466 NFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
.+...+...|+.+.|.++++.+++..+....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 4455566778888888888888777665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=40.65 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=40.6
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
...+.+.|++++|...|+.+++..+. +...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566777777777777777776644 6677777777777778888887777777654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.69 E-value=1 Score=46.99 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=31.8
Q ss_pred HccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCH
Q 009424 118 KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMR 192 (535)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 192 (535)
+.|+.++|..+++.....+ ..|..+...+-..|...|+.++|..++++.....|+......+..+|++.+++
T Consensus 55 r~gk~~ea~~~Le~~~~~~---~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLK---GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HhcCchhHHHHHhhhccCC---CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333 11444444444444444444444444444444434433344444444444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0063 Score=42.62 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=55.5
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcC-ChhhHHHHHHHHhcCCC
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEES-DMGSKEAFVALLRQPGY 492 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~ 492 (535)
+...|..+...+...|++++|+..|.+.. .+.|+. ..|..+-.++...| ++++|.+.+++.++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999 345654 56777777889999 79999999999887543
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.31 Score=40.69 Aligned_cols=65 Identities=6% Similarity=-0.111 Sum_probs=30.8
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
|++..--.|..+..+.|++.+|...|.+...--+.-|....-.+.++....+++..|...++.+-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 34444444445555555555555555544443333344444444444444555555555444444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=1 Score=46.04 Aligned_cols=319 Identities=12% Similarity=0.067 Sum_probs=163.0
Q ss_pred hCCCCCCHHHHH-----HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhC---CHhhHHHHHhhCC
Q 009424 99 KGGRSLTKWELC-----RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVH---GVASAEDFFLSLP 170 (535)
Q Consensus 99 ~~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~ 170 (535)
+-|+..+..-|. .++..+...+.+..|+++-.++-..- .....++.....-+.+.. +-+.+..+=+++.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~---~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE---SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc---ccccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 346776665554 45677778888999999887764332 222567777777776653 2333444444444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC----cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 009424 171 DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYA----VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 171 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
......++|..+....-.+|+++-|..+.+.=...+-. .+..-+...+.-+.+.|+.+-...++-.+.+.- +.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 32245678888888888899999999888753332210 122335556666777788877777776665541 11
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----hcccCCCcchHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL-RRVE----SRITGRDRVPYH 321 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----~~g~~~~~~~~~ 321 (535)
..|.-.+ .+...|..+|.+..++.+- . .+-+.|-...+...+-.+. +... ..|..|+ ..
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~~~----~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQDR----A---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhhch----h---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 1121111 2333444555444432111 1 1111122222211111111 1100 0111122 22
Q ss_pred HHHHHHHhcCC----------HHHHHHHHHHHHh-hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH
Q 009424 322 YLLSLYGSVGK----------KEEVYRVWNLYRS-VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390 (535)
Q Consensus 322 ~li~~~~~~g~----------~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 390 (535)
.....+++... ..+-+.+.+.+.. .+..-...+.+-.+.-+...|+..+|.++-.+.. -||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 22233333322 1111222222222 1222222445555556666677777766665532 2466666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-.-+.+++..+++++-+++-+.++ .+.-|.-.+.+|.+.|+.++|.+++-+..
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 666667777777666655544432 24455566667777777777777666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.38 Score=45.42 Aligned_cols=85 Identities=12% Similarity=-0.056 Sum_probs=43.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCC
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL-DVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~ 261 (535)
-..+.+..++.+|+..+....+.+ +-++.-|..-...+...|+++++.--.+.-.+. +| ......-.-+++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 345556666777777776666654 223444555555566666666666555444332 11 11223333344444455
Q ss_pred HhHHHHHHH
Q 009424 262 TEKMEGVFE 270 (535)
Q Consensus 262 ~~~a~~~~~ 270 (535)
..+|.+.++
T Consensus 133 ~i~A~~~~~ 141 (486)
T KOG0550|consen 133 LIEAEEKLK 141 (486)
T ss_pred HHHHHHHhh
Confidence 555555444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.45 Score=41.73 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=84.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCcC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYAVH----SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS 258 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 258 (535)
...+.+.|++++|.+.|+++...- |+ ....-.++.++.+.|++++|...++++.+.-..-...-+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344567788888888888877642 21 223445667777888888888888887765322112222222222221
Q ss_pred CCC-------------HhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 259 QGS-------------TEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 259 ~g~-------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
... ..+|.. .+..+|.-|=......+|...+..+.+.-- ..--.+..
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la----~~e~~ia~ 149 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNRLA----EHELYIAR 149 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 111 112222 233344444444555555554444432100 00112445
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhH
Q 009424 326 LYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGM 371 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a 371 (535)
-|.+.|.+..|..-++.+.+..+.... .....++.++.+.|..+.+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 677777777777777777776555443 3455666667777666533
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.27 Score=44.57 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=85.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCC
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKS 456 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g 456 (535)
..++. |...|-.|...|...|+.+.|..-|.+..+...+ |...+..+..++.... ...++.++|+++. .
T Consensus 150 ~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al------~ 221 (287)
T COG4235 150 QQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQAL------A 221 (287)
T ss_pred HhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH------h
Confidence 34444 8999999999999999999999999999885333 6666777776655432 4568999999999 5
Q ss_pred CCCCHHHHH-HHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 457 WRPKPVNVI-NFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 457 ~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..|+..+-. .+-..+...|++.+|...|+.|.+..+..+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 677666544 4456888999999999999999998876554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.02 Score=50.68 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=72.0
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC----------
Q 009424 161 SAEDFFLSLPDTLKDRRVYGALLNAYVRA-----RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK---------- 225 (535)
Q Consensus 161 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------- 225 (535)
..++.|.......+|-.+|-+.+..+... +.++=....++.|.+.|+..|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 44566666664447888888888777654 566767777888999999999999999988765432
Q ss_pred ------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 226 ------EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 226 ------~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
+-+-++.++++|...|+.||..+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224466777777777777777777777777766554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.027 Score=44.68 Aligned_cols=52 Identities=6% Similarity=-0.044 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 009424 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292 (535)
Q Consensus 241 g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 292 (535)
...|+..+..+++.+|+..|++..|.++.+...+..+++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3557777777777777777777777777777776666666667777666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.017 Score=40.95 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555554333 44444445555555555555555555555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.21 Score=41.13 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HcCCCCCHhHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII-----EEGGKPNSTSW 425 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 425 (535)
....++..+...|+++.|..+...+....+. |...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556777788899999999999998887655 88899999999999999999999998775 35888887664
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.4 Score=45.04 Aligned_cols=307 Identities=12% Similarity=0.099 Sum_probs=179.0
Q ss_pred HHHHHHHhhCCHhhHHHHHhhCCCCCCC---HHHHHHHHHHHHHcCCH---hHHHHHHHHHHHCCCCcCcchHHHHHHHH
Q 009424 148 IQLDLIAKVHGVASAEDFFLSLPDTLKD---RRVYGALLNAYVRARMR---GNAELLIDKMRDKGYAVHSLPYNVMMTLY 221 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 221 (535)
.+++-+...+.+..|.++-..+.. |. ..+|.....-+.+..+. +-+..+-+++... . -+..+|..+..-.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 356677777888888888877766 43 56677777777766432 2233333333332 2 3467788888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 222 MKIKEYDEVESMVSEMKEKGIR----LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297 (535)
Q Consensus 222 ~~~g~~~~a~~~~~~m~~~g~~----pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 297 (535)
...|+.+-|..+++.=.+.+-. .+..-+...+.-+...|+.+....++-.+..+ .+...+...+ .+
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----~~~s~l~~~l------~~ 587 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----LNRSSLFMTL------RN 587 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH----HHHHHHHHHH------Hh
Confidence 8899999998887643322211 12223444555666777777777777666642 1222222111 23
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH----H-hhCCCCchhhHHHHHHHHHhcCCHhhH-
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY----R-SVFPGVTNLGYHAMISSLARIGDIEGM- 371 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~-~~~~~~~~~~~~~ll~~~~~~g~~~~a- 371 (535)
.-.|..+|.+..+.. |.. .+-+.|-+..+..++-.+.-+- . ..+..|+ .....+++++.....-.
T Consensus 588 ~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred chhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 445566666554321 111 1122232333322222111111 0 1122222 23444455554442211
Q ss_pred ---------HHHHHHHH-hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 372 ---------EKIFEEWL-SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 372 ---------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
.++.+.+. +.|....-.+.+--+.-+...|+-.+|.++-.+.+ .||-..|..-+.+++..++|++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 11222221 12323334455556667778899999998877665 47999999999999999999998
Q ss_pred HHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 442 LSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.++-+.++ .+.-|..+..+|.+.|+.++|.+++.+....-
T Consensus 735 ekfAkskk----------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 735 EKFAKSKK----------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHHhccC----------CCCCchhHHHHHHhcccHHHHhhhhhccCChH
Confidence 87777665 25678888999999999999999999987654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.89 Score=42.72 Aligned_cols=300 Identities=14% Similarity=0.055 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHH--cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHH--HHH
Q 009424 177 RVYGALLNAYVR--ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLY--MKIKEYDEVESMVSEMKEKGIRLDVY--SYN 250 (535)
Q Consensus 177 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~pd~~--~~~ 250 (535)
.-|.+|-.++.. .|+-..|+++-.+-.+. +.-|....-.++.+- .-.|+++.|.+-|+-|... |... -..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 345666655544 47778888877665432 233455555555443 3568999999999999753 2211 122
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-ccCCCcc--hHHHHHHHH
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR-ITGRDRV--PYHYLLSLY 327 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~--~~~~li~~~ 327 (535)
.|.-..-+.|+.+.|+++-+..-... +.-...+.+.+...+..|+++.|+++.+.-+.. -+.++.. .-..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 23333456888888888888776432 334567888999999999999999999876543 2445543 222333322
Q ss_pred Hh---cCCHHHHHHHHHHHHhhCCCCchh-hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 328 GS---VGKKEEVYRVWNLYRSVFPGVTNL-GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 328 ~~---~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
+. ..+...|...-.+..+ ..|+.. .-.....++.+.|++.++-.+++.+-+..+.|++ +. +..+.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd- 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD- 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC-
Confidence 21 2345566665555544 344432 2234557889999999999999999777665554 22 223344444
Q ss_pred hHHHHHHHHHHH-cCCCC-CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH-HhcCChhhH
Q 009424 404 DKAEAFFNSIIE-EGGKP-NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC-EEESDMGSK 480 (535)
Q Consensus 404 ~~A~~~~~~m~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~-~~~g~~~~a 480 (535)
.+..-+++... ..++| +..+--.+..+-...|++..|..--+... ...|....|..+-..- ...||-.++
T Consensus 310 -ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~------r~~pres~~lLlAdIeeAetGDqg~v 382 (531)
T COG3898 310 -TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA------REAPRESAYLLLADIEEAETGDQGKV 382 (531)
T ss_pred -cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh------hhCchhhHHHHHHHHHhhccCchHHH
Confidence 44444444433 22344 46666677788888899988887777776 5678888887777654 455999999
Q ss_pred HHHHHHHhcCCCCChh
Q 009424 481 EAFVALLRQPGYRKEK 496 (535)
Q Consensus 481 ~~~~~~~~~~~~~~~~ 496 (535)
++.+.+.++.--+|..
T Consensus 383 R~wlAqav~APrdPaW 398 (531)
T COG3898 383 RQWLAQAVKAPRDPAW 398 (531)
T ss_pred HHHHHHHhcCCCCCcc
Confidence 9999998887655544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.088 Score=47.98 Aligned_cols=94 Identities=11% Similarity=0.157 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc----chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDR----VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAM 358 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l 358 (535)
|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|+..|+.+....+..+. ..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333334455555555555544322 221 13333444444455555555555554443332111 122223
Q ss_pred HHHHHhcCCHhhHHHHHHHHHh
Q 009424 359 ISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~ 380 (535)
...+...|+.+.|..+++.+++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.37 Score=48.06 Aligned_cols=223 Identities=14% Similarity=0.118 Sum_probs=122.2
Q ss_pred HHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 009424 214 YNVMMTLYMKIKE--YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291 (535)
Q Consensus 214 ~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 291 (535)
++..=.+|.+-.+ +-+-+.-+++|+++|-.||.... ...|+-.|++.+|-++|.+--. . |-.+.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~----e------nRAlEm 667 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGH----E------NRALEM 667 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCc----h------hhHHHH
Confidence 3444445544443 23444456778888877887643 4456778888888888865321 1 222334
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCchhhH---------HHHHH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS--VFPGVTNLGY---------HAMIS 360 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~---------~~ll~ 360 (535)
|.....++.|.+++. .|..++-..+.++--+ ...+-+...- .-.+.
T Consensus 668 yTDlRMFD~aQE~~~-----------------------~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLG-----------------------SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIE 724 (1081)
T ss_pred HHHHHHHHHHHHHhh-----------------------cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhh
Confidence 444333444433332 2222222222111100 0011010000 01122
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
.+...|-.+.+.++-.++-+. +..+...+..-+.+...+.-|-++|..|-+. ..++......++|++
T Consensus 725 i~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~e 791 (1081)
T KOG1538|consen 725 ICGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDE 791 (1081)
T ss_pred hhhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchH
Confidence 233334444444443332211 3334444444555667788899999887542 256778889999999
Q ss_pred HHHHHHHhHHhccCCCCCCCHH-----------HHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 441 ALSCLKGAFAAEGAKSWRPKPV-----------NVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~~-----------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
|..+-+... .+.||.. -|.-.-.|+.+.|+..+|.++++++....
T Consensus 792 AFalAe~hP------e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 792 AFALAEKHP------EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hHhhhhhCc------cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 999998877 4555532 35555668999999999999999986543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.071 Score=42.30 Aligned_cols=101 Identities=12% Similarity=-0.007 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 352 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
..++..++.++++.|+++....+++.. .|+.++...- .+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 456777777777777777777777654 3433222100 000 11123456788888888888
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
|+.+|++..|+++.+...+ ..+++-+..+|..|+.-+...-
T Consensus 62 f~~n~~i~~al~~vd~fs~---~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSR---KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHhcccHHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHhc
Confidence 8888888888888888775 5567777888888887554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.3 Score=42.25 Aligned_cols=127 Identities=17% Similarity=0.069 Sum_probs=65.2
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHcCCCCCHhH---HHHHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK---------EGNFDKAEAFFNSIIEEGGKPNSTS---WETLAEGH 432 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~ 432 (535)
.|+.++|++++..+....-.+++.+|..+...|-. ....+.|...|.+.-+. .||..+ +.+|+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 55566666665554444444455555554444422 11255666666655442 233322 22222222
Q ss_pred Hccc-cHHHHHHHH---HHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 433 IRER-RILEALSCL---KGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 433 ~~~g-~~~~A~~~~---~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.... .-.+..++- ....-..+..+-..|...+.+++.++.-.|+++.|.+..++|.+..++
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2111 111222222 222210112223456667788889999999999999999999988643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.3 Score=41.61 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=156.6
Q ss_pred HccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHH--HHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHH----HHHHcCC
Q 009424 118 KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL--IAKVHGVASAEDFFLSLPDTLKDRRVYGALLN----AYVRARM 191 (535)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~----~~~~~g~ 191 (535)
..|+-..|.++-.+..+. +..|..-...++.+ -.-.|+.+.|++-|+.|.+ |..+-..=+. .--+.|+
T Consensus 96 gAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhccc
Confidence 456666776665554432 23333333333332 2345788888888888876 4444332222 2245677
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHhc---CCCHhHH
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKG-IRLDVYS--YNIWLSSCGS---QGSTEKM 265 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~pd~~~--~~~ll~~~~~---~g~~~~a 265 (535)
.+.|+..-++.-..- +-=...+.+.+...+..|+++.|+++.+.-+... +.+|+.- -..|+.+-+. ..+...|
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 777777766665442 1113456777888888888888888887665543 3444322 2233333221 2345555
Q ss_pred HHHHHHhHhCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 266 EGVFELMKVDKAVNPNWTTF-STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 344 (535)
+..-.+..+ +.||..-- -.-...+.+.|+..++-.+++.+-+..+.|+. +.. -.+.+.|+ .++.-+++.+
T Consensus 249 r~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 249 RDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCC--cHHHHHHHHH
Confidence 555544443 35554322 22345677888888888888888765444432 221 22334444 3333333332
Q ss_pred h-hCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHc
Q 009424 345 S-VFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK-EGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 345 ~-~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 416 (535)
. ...+|+. .+...+..+-...|++..|..--+...+ ..|....|..|.+.-.- .|+-.++...+.+....
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2 1133433 4555666777778888877766665543 35667777777665544 48888888887777654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.7 Score=41.58 Aligned_cols=77 Identities=18% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAV--NPNWTTFSTMATMYIK---MGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
.++-+|....+++...++.+.+..-..+ ..+..+--...-++.+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334566666666666666666542111 1111122223334444 6666666666666444444455555555544
Q ss_pred HH
Q 009424 326 LY 327 (535)
Q Consensus 326 ~~ 327 (535)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.85 Score=37.65 Aligned_cols=87 Identities=16% Similarity=0.076 Sum_probs=58.0
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 397 YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESD 476 (535)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~ 476 (535)
+-..|++++|..+|.-+.-.++. |..-|..|...+-..+++++|+..|..+. ..+ .-|+..+-..-..+...|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~----~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAF----TLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hcc-cCCCCccchHHHHHHHhCC
Confidence 44577888888887777665444 55566667777777777888888777776 222 1234444455556677778
Q ss_pred hhhHHHHHHHHhc
Q 009424 477 MGSKEAFVALLRQ 489 (535)
Q Consensus 477 ~~~a~~~~~~~~~ 489 (535)
.+.|+..|+..++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777776
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.071 Score=37.63 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
.|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666553 334555555666666666666666666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.019 Score=41.38 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC-CC-HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEE----GGK-PN-STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+++.+...|...|++++|+..|++..+. |.. |+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666666666666666666665532 111 11 3345555566666666666666666554
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.9 Score=43.50 Aligned_cols=61 Identities=7% Similarity=-0.089 Sum_probs=38.2
Q ss_pred HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh----HHHHHHHHhcCCCCChh
Q 009424 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS----KEAFVALLRQPGYRKEK 496 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~ 496 (535)
++..+.+..+.+++..+.+..- +. ++..|..+++.+.+.+.++. ..++++.+......|+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl 775 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL 775 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----cc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH
Confidence 5566677777777777776655 22 67788888888887775443 44444454444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.87 Score=37.08 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 295 (535)
.++..+.+.+.......+++.+.+. + ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 3444444444455555555554432 1 23444455555555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.075 Score=38.13 Aligned_cols=61 Identities=15% Similarity=0.365 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVK--SS---YD-PRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+++.+...|...|++++|+..+++..+.. .. |+ ..+++.+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555566666666666666666555321 11 11 3344555556666666666666665544
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.24 Score=47.86 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP--RIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
..++.+..+|.+.|++++|...|++.++..+.... ..|..+..+|.+.|+.++|+..+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555666666666666666655544333111 2355555666666666666666665554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.51 Score=44.51 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=32.9
Q ss_pred HHHHccChHHHHHHHHHHHhcC-CCcccCHhHHHHHHHHHHhhCCHhhHHHHH
Q 009424 115 ELRKFRRYKHALEVYDWMNNRG-ERFRLSASDAAIQLDLIAKVHGVASAEDFF 166 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 166 (535)
.+++.|+...+..+|+..++.| ..+..-+..|..|.++|.-.+++++|.++.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 4567777777777777777776 112222345555666666667777777655
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.92 Score=36.93 Aligned_cols=85 Identities=7% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 009424 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ 259 (535)
Q Consensus 180 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 259 (535)
..+|..+.+.+........++.+...+ ..+....|.++..|++.. ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 245556666666666543 2233333331 11223333455555555
Q ss_pred CCHhHHHHHHHHh
Q 009424 260 GSTEKMEGVFELM 272 (535)
Q Consensus 260 g~~~~a~~~~~~~ 272 (535)
+-++++.-++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.96 Score=35.54 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=74.0
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchH---HHHHHHHHhcCCH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY---HYLLSLYGSVGKK 333 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~ 333 (535)
.-.|.++++.++..+.... .+..-+|.+|--....-+-+-..++++.+ |--.|.... ..++.+|+..|.
T Consensus 13 ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc-
Confidence 4467888888888887753 34444454443333333333334444433 333444332 233444444332
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
+...+...++.+...|.-++-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.+.
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 223445667777788888888888887765 33567777778888888888888888888877
Q ss_pred HHcCCC
Q 009424 414 IEEGGK 419 (535)
Q Consensus 414 ~~~~~~ 419 (535)
-++|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 776654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.8 Score=38.48 Aligned_cols=179 Identities=11% Similarity=0.099 Sum_probs=103.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcccC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC--
Q 009424 292 YIKMGQVEKAEESLRRVESRITG--RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD-- 367 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-- 367 (535)
-.+.|++++|.+.|+.+..+-+- -...+.-.++-++.+.++.++|+..+++.....|..+..-|..-|.+++..-.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 45678888888888888754221 11224445567778888899999999888887777777777777777663321
Q ss_pred -----HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhH-H-HHHHHHHHccccHHH
Q 009424 368 -----IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTS-W-ETLAEGHIRERRILE 440 (535)
Q Consensus 368 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~-~~li~~~~~~g~~~~ 440 (535)
...+.+-+..+ ..+|.-|=...-..+|..-...+.. ... + -.+.+-|.+.|.+..
T Consensus 124 ~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~d------~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 124 DVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLND------ALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHHH------HHHHHHHHHHHHHHHhcChHH
Confidence 11122222211 1122222222222223322222221 111 1 134566888888888
Q ss_pred HHHHHHHhHHhccCCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 441 ALSCLKGAFAAEGAKSWRPKP---VNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
|..-+++|.+ . ..-.. ..+-.+..++...|..++|...-+-+...-+.
T Consensus 186 A~nR~~~v~e----~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 186 AINRFEEVLE----N-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHh----c-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 8888888883 2 22222 24455566888888888888877666554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.9 Score=40.31 Aligned_cols=390 Identities=11% Similarity=0.056 Sum_probs=187.8
Q ss_pred ccCCCCccHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh
Q 009424 82 LMDNPQLGSASVLNDWEKGGRSLTKW------ELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK 155 (535)
Q Consensus 82 ~~g~~~~~a~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~ 155 (535)
+.++.. +|..+|.+..+. +.-+++ .-+.+++|+.. .+++..........+.. +......-...-...+
T Consensus 18 kq~~~~-esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 18 KQKKFQ-ESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---GKSAYLPLFKALVAYK 91 (549)
T ss_pred HHhhhh-HHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHH
Confidence 457788 888888888654 222322 23466677664 34555555555555443 2222222222223456
Q ss_pred hCCHhhHHHHHhhCCCC-----C-----------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC----cCcchHH
Q 009424 156 VHGVASAEDFFLSLPDT-----L-----------KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYA----VHSLPYN 215 (535)
Q Consensus 156 ~g~~~~A~~~f~~~~~~-----~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~ 215 (535)
.+.+.+|.+.|..-.+. + +|-+.=+..+..+.+.|++.+++.++++|..+=++ =+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888877654332 1 12223356677788899999999999888765333 5777888
Q ss_pred HHHHHHHhcC--------C-------hhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcC--CCHhHHHHHHHHh
Q 009424 216 VMMTLYMKIK--------E-------YDEVESMVSEMKEK------GIRLDVYSYNIWLSSCGSQ--GSTEKMEGVFELM 272 (535)
Q Consensus 216 ~li~~~~~~g--------~-------~~~a~~~~~~m~~~------g~~pd~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 272 (535)
.++-.+++.= . ++.++-...+|... .+.|-...+..++....-. ..+.--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7655554421 1 12222222222221 1233333333333332211 1122222333333
Q ss_pred HhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcccC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 009424 273 KVDKAVNPNWT-TFSTMATMYIKMGQVEKAEESLRRVESRITG----RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF 347 (535)
Q Consensus 273 ~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 347 (535)
. +.-+.|+.. +...|+.-+.+ +.+++..+-+.+....+. .=..+|..++....+.++..+|-+.+.-++...
T Consensus 252 e-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 252 E-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred H-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 2 122344322 23333333333 334443333333221111 112345555555566666655555555444322
Q ss_pred CCCc------------------------------------------h-hhHHHH---HHHHHhcCC-HhhHHHHHHHHHh
Q 009424 348 PGVT------------------------------------------N-LGYHAM---ISSLARIGD-IEGMEKIFEEWLS 380 (535)
Q Consensus 348 ~~~~------------------------------------------~-~~~~~l---l~~~~~~g~-~~~a~~~~~~~~~ 380 (535)
+... . ....-+ ..-+-+.|. -++|..+++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 2211 1 000011 111222333 5556666665554
Q ss_pred cCCCCCHHHHHHHH----HHHHHc---CChhHHHHHHHHHHHcCCCCCHh----HHHHHHHH--HHccccHHHHHHHHHH
Q 009424 381 VKSSYDPRIANLMM----SWYVKE---GNFDKAEAFFNSIIEEGGKPNST----SWETLAEG--HIRERRILEALSCLKG 447 (535)
Q Consensus 381 ~~~~~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~ 447 (535)
-.. .|...-|.+. .+|... ..+.+-.++-+-+.+.|+.|-.+ .-|.+.++ +..+|++.++.-.-..
T Consensus 409 ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 321 1333333322 222221 22223333333334556655322 23333332 4466788887766666
Q ss_pred hHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 448 AFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 448 m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
.. .+.|++.+|..+--......++++|..++..+
T Consensus 488 L~------~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 488 LT------KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH------HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55 57788888877766667777888888887654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.44 Score=39.27 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=39.7
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
..|++++|..+|..+...++. +..-|..|..++-..+++++|...|......+.. |...+-.....|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 445555555555544443332 3444444444454555555555555444333221 33333334445555555555555
Q ss_pred HHHHhH
Q 009424 444 CLKGAF 449 (535)
Q Consensus 444 ~~~~m~ 449 (535)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.17 Score=48.83 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV----NVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
...|+.+..+|.+.|++++|+..|++.. .+.|+.. +|..+..+|...|+.++|.+.+++.++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL------eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL------ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555 2344432 2444555555555555555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.26 Score=44.75 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHH-hccCCCCCCCHHHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA-AEGAKSWRPKPVNVI 465 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~g~~p~~~~~~ 465 (535)
..++..++..+..+|+.+.+...++++....+. +...|..+|.+|.+.|+...|+..|+++.+ ...+.|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345667788888888888888888888886555 788888899999999988888888888874 233678888877776
Q ss_pred HHHHH
Q 009424 466 NFFKA 470 (535)
Q Consensus 466 ~ll~a 470 (535)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.4 Score=44.22 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=71.8
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHc--C-CCCCHhHHHHHHHHHHccccHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANL-MMSWYVKEGNFDKAEAFFNSIIEE--G-GKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~--~-~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
....+.|.+++..+.+.- |+...|.. -...+...|++++|.+.|++.... . .+.....+--+...+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 345677788888776543 45444433 345566678888888888865431 0 11233445556666777888899
Q ss_pred HHHHHHHhHHhccCCCCCCCHHHHHHHHHHH-HhcCCh-------hhHHHHHHHHh
Q 009424 441 ALSCLKGAFAAEGAKSWRPKPVNVINFFKAC-EEESDM-------GSKEAFVALLR 488 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~-~~~g~~-------~~a~~~~~~~~ 488 (535)
|.+.|..+.+ ...+ +..+|..+..+| ...|+. ++|.+++.+.-
T Consensus 324 A~~~f~~L~~---~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLK---ESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHh---cccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9888888883 2222 345555555544 345666 77777777663
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.8 Score=43.38 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHH-----HHHHHHHHHHh----cCCHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWT-----TFSTMATMYIK----MGQVEKA 301 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~----~g~~~~A 301 (535)
.-+|.-+... ++|. +..+++..+-.||-+.+.+.+....+..++..... .|..++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3444444443 3332 34455666677888888888877765444432222 23333333322 3456677
Q ss_pred HHHHHHHHhcccCCCcchHHHHH-HHHHhcCCHHHHHHHHHHHHhhC---CCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 302 EESLRRVESRITGRDRVPYHYLL-SLYGSVGKKEEVYRVWNLYRSVF---PGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
.++++.+.++ -|+...|...- +.+...|++++|++.|++..... .......+--+.-.+.-..++++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 7777777653 46666655442 45556677777777777543211 111222333444445556666666666666
Q ss_pred HHhcCCCCCHHHHHHHH-HHHHHcCCh-------hHHHHHHHHHH
Q 009424 378 WLSVKSSYDPRIANLMM-SWYVKEGNF-------DKAEAFFNSII 414 (535)
Q Consensus 378 ~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~ 414 (535)
+.+..-. +..+|.-+. .++...|+. ++|.++|.+..
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6553321 233333222 223334555 55555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.2 Score=43.22 Aligned_cols=98 Identities=6% Similarity=-0.127 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHH
Q 009424 403 FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKE 481 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~ 481 (535)
..+|.++.++..+.+.. |......+..+....++.+.|..+|+++. .+.||.. +|...-..+...|+.++|.
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~------~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAK------IHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHh------hcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555554443 55555555555556666666666666666 4556543 3333334455566666666
Q ss_pred HHHHHHhcCCCCChh--hHHHHHHHhHh
Q 009424 482 AFVALLRQPGYRKEK--DYMSLIGLTDE 507 (535)
Q Consensus 482 ~~~~~~~~~~~~~~~--~~~~L~~~y~~ 507 (535)
+.+++..+..|..-. .....+++|..
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~~~ 420 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMYVP 420 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHcC
Confidence 666666666555433 33455555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.6 Score=37.20 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKS--SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 438 (535)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34444555555555554432111 0112222222333444555555555555555421111234445555555555555
Q ss_pred HHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 009424 439 LEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
+.|...+.... ...|+ ...+..+...+...+..+.+...+....+..+
T Consensus 219 ~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 219 EEALEYYEKAL------ELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHH------hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55655555555 22232 22233333333344445555555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.46 Score=37.16 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=47.6
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
+.+..|+++.|++.|.+....-++ +...||.-..++.-+|+.++|++=++++.++.+..+ +.--..|..=-..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-rtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-RTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHhC
Confidence 344555666666666555543222 455566666666666666666666666553221110 001112222223455566
Q ss_pred ChhhHHHHHHHHhcCCCC
Q 009424 476 DMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~ 493 (535)
+.+.|+.-|+..-+.|-.
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 666666666666555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.1 Score=35.69 Aligned_cols=134 Identities=9% Similarity=0.028 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhh-CCHhhHHHHHhhC
Q 009424 91 ASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKV-HGVASAEDFFLSL 169 (535)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~~ 169 (535)
++..+.+.+.|+.|+...+..+++.+.+.|.+..-.++.. .+. ++.+..+...+++.-.+. .-..-|.+++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~V-i~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHV-IPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcc-cCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 3455566667888888888888888888887665555443 330 233333333332222111 0122333333333
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009424 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239 (535)
Q Consensus 170 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 239 (535)
.. .+..++..+...|++-+|+++.+..... +...-..++.+..+.++...-..+|+-..+
T Consensus 89 ~~------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GT------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 3444555555666666666665554222 222334455555555554444444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.8 Score=45.29 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHcCCHhHHHHHHH-HHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 187 VRARMRGNAELLID-KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 187 ~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
.-.|+++++.++.+ .-.-..++ ..-.+.+++.+-+.|..+.|+++-..-. .-.....++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 34566666666554 11111121 2335666666666666666666543221 123444566666666
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 266 EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
.++-.+ ..+...|..|.+...+.|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+....
T Consensus 338 ~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 338 LEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 654422 22455666666666666666666666665422 44555555566665555555444433
Q ss_pred hCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
.+ -++....++.-.|+.++..+++.
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 21 13344444445555555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.7 Score=41.28 Aligned_cols=257 Identities=11% Similarity=0.032 Sum_probs=148.4
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcC----cchHHHHHHHHHhcCChhHHHHHHHHH--HHc--CCC-CCHHHHHHHHHH
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVH----SLPYNVMMTLYMKIKEYDEVESMVSEM--KEK--GIR-LDVYSYNIWLSS 255 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~--g~~-pd~~~~~~ll~~ 255 (535)
-+++.|+....+.+|+...+.|- -| ...|..|..+|.-.+++++|++++..= +.+ |-+ -...+...|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 36788888889999998888772 12 234556666777777888888875421 111 100 001111112222
Q ss_pred HhcCCCHhHHHH-----------HHHHhHhCCCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 009424 256 CGSQGSTEKMEG-----------VFELMKVDKAVNPNWTTFSTMATMYIKMGQ--------------------VEKAEES 304 (535)
Q Consensus 256 ~~~~g~~~~a~~-----------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~ 304 (535)
+--.|.+++|.- +=+.+.+ ...+-.|.+.|...|+ ++.|.++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e-------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLE-------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhh-------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 223344444433 2222221 2234445555654442 2344444
Q ss_pred HHHHHh----cccC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hhCCCCch-hhHHHHHHHHHhcCCHhhHHHH
Q 009424 305 LRRVES----RITG-RDRVPYHYLLSLYGSVGKKEEVYRVWNLYR----SVFPGVTN-LGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 305 ~~~m~~----~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
|.+=.+ .|-. .--..|..+-..|.-.|+++.|+...+.-. +.|..... ..+..+.+++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 443211 1100 112244555555666788999887766432 22322222 5677888889999999999988
Q ss_pred HHHHHh----cCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----c-CCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 375 FEEWLS----VKSS-YDPRIANLMMSWYVKEGNFDKAEAFFNSIIE----E-GGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 375 ~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
|+.... .|-. ....+.-+|.+.|.-..++++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 876542 2211 2334556678888888888999888865432 1 1222567788999999999999999988
Q ss_pred HHHhH
Q 009424 445 LKGAF 449 (535)
Q Consensus 445 ~~~m~ 449 (535)
.....
T Consensus 338 ae~hl 342 (639)
T KOG1130|consen 338 AELHL 342 (639)
T ss_pred HHHHH
Confidence 87766
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.9 Score=36.84 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=30.8
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 009424 425 WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
|...|-.|....++..|.+.++.--+.. ...-.-+..+...||.+|- .||.|++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip-~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIP-AFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCc-cccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 4444555555667777777777644100 1111223456666666654 36666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.63 E-value=4.5 Score=39.00 Aligned_cols=67 Identities=1% Similarity=0.066 Sum_probs=50.7
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcC
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRG 136 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 136 (535)
.|+.+|-.||.-|...|..+ +..+++++|.+- .+.-+..|..-+++-....++.....+|.+.++..
T Consensus 40 tnI~S~fqLiq~~~tq~s~~-~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 40 TNILSYFQLIQYLETQESMD-AEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHH-HHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 56789999999999999999 999999999653 22234455566666666677888888888777655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=3.5 Score=37.55 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=93.1
Q ss_pred HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCH--HHHHHHHHHHHH
Q 009424 111 RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDR--RVYGALLNAYVR 188 (535)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~ 188 (535)
.-.......|++.+|..+|....... +-+......+..+|...|+++.|..+++.++....+. ....+-|..+.+
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 34456677899999999999888875 3346667778888999999999999999988752222 122233455555
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLDVYSYNIWLSSCGSQG 260 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~~~~~~ll~~~~~~g 260 (535)
.....+...+-.+.-.. +-|...-..+...+...|+.++|++.+-.+.+++. .-|...-..++..+.-.|
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55555555555554443 22555566677777888888888877766665421 124444555555554444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.56 E-value=4 Score=38.04 Aligned_cols=132 Identities=11% Similarity=0.158 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHHHHh--cC----CHHHHHHHHHHHHhhCCCCc---hhhHHHHHHHHHhcCC-
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGS--VG----KKEEVYRVWNLYRSVFPGVT---NLGYHAMISSLARIGD- 367 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~- 367 (535)
+++...+++.|.+.|+..+..+|-+....... .. ....+..+|+.|++..+-.+ ...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888888887766553332222 22 25678888888888665433 3555555443 3333
Q ss_pred ---HhhHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 368 ---IEGMEKIFEEWLSVKSSYDPR--IANLMMSWYVKEGN--FDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 368 ---~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
.+..+.+|+.+.+.|+..+-. ....++...-.... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 345667777777767664322 22223322221111 44677888888888888777777665433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.4 Score=35.50 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHhcCCHhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 362 LARIGDIEGMEKIFEEWLSVKSS--YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
..+.|+++.|.+.|+.+...-+. ......-.++.+|.+.|++++|...+++.++..+.-.-+-|...+.|++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34556666666666665543221 1233444566666666666666666666666544322344555555554433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.6 Score=43.20 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHH
Q 009424 106 KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNA 185 (535)
Q Consensus 106 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~ 185 (535)
..-...+++-+-+.|..+.|+++-..- ..-.+...++|+++.|.++-++.. +...|..|-+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~--------------~~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP--------------DHRFELALQLGNLDIALEIAKELD----DPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H--------------HHHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh--------------HHHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHH
Confidence 333556777777777777777653221 123455667777777777766653 56677777777
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
..+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++-+.....|- ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 7777777777777776433 56666667777777666666666665542 34444455556666666
Q ss_pred HHHHHHh
Q 009424 266 EGVFELM 272 (535)
Q Consensus 266 ~~~~~~~ 272 (535)
.+++..-
T Consensus 422 v~lL~~~ 428 (443)
T PF04053_consen 422 VDLLIET 428 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.2 Score=31.20 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
++..+...|...|++++|+++|++..+..+. |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555666666666666666666666665433 44444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.11 E-value=2 Score=40.06 Aligned_cols=129 Identities=14% Similarity=0.189 Sum_probs=72.2
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh--cC----ChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhcCCC-
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK--IK----EYDEVESMVSEMKEKG---IRLDVYSYNIWLSSCGSQGS- 261 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g---~~pd~~~~~~ll~~~~~~g~- 261 (535)
+++...+++.|.+.|++-+..+|-+....... .. ....+.++|+.|++.- ..++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788888888888877666553333322 22 2457888888888764 23556666666544 3333
Q ss_pred ---HhHHHHHHHHhHhCCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcccCCCcchHHHH
Q 009424 262 ---TEKMEGVFELMKVDKAVNPNW--TTFSTMATMYIKMGQ--VEKAEESLRRVESRITGRDRVPYHYL 323 (535)
Q Consensus 262 ---~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~l 323 (535)
.+.+..+|+.+.+ .|+..+- ...+.++........ ...+.++++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2455666666664 3444332 223333332222111 33566667777777666665555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.78 Score=41.11 Aligned_cols=34 Identities=6% Similarity=-0.152 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD 367 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 367 (535)
+-++.++++|...|+.||..+-..+++++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3455666666666666666666666666655554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.92 E-value=2 Score=39.02 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=58.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
..|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4445555555555444332 112333344445555555555555555544333211111122222333333334443444
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cCCCcchHHHHHHHHHhcC
Q 009424 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI-TGRDRVPYHYLLSLYGSVG 331 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g 331 (535)
+....-.+ +-|...-..+...|...|+.+.|.+.+-.+.++. -.-|...-..++..+.-.|
T Consensus 225 l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 225 LQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444331 2244444455555555555555555444443221 1123334444444444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.79 E-value=7.5 Score=38.27 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGK-PNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+..+.-+.|+.++|.+.|.+|.+.... -+......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555555667777777777766543211 133455566667777777777776666654
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.15 Score=31.72 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHH
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMS 500 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 500 (535)
+|..+-.++...|++++|.++++++++..+.+...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 34444455555555555555555555555544444333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.70 E-value=5.8 Score=36.75 Aligned_cols=164 Identities=10% Similarity=0.053 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGK---KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMS 395 (535)
Q Consensus 319 ~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 395 (535)
+...++.+|...+. .++|..+++.+....+.+. .++..-+..+.+.++.+.+.+.+.+|+..-.. ....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~-~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP-EVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 45566777777666 4456666677766655543 34445566666678888888888888765321 2233444444
Q ss_pred HH---HHcCChhHHHHHHHHHHHcCCCCCHhHHH-H-HHH---HHHccc------cHHHHHHHHHHhHHhccCCCCCCCH
Q 009424 396 WY---VKEGNFDKAEAFFNSIIEEGGKPNSTSWE-T-LAE---GHIRER------RILEALSCLKGAFAAEGAKSWRPKP 461 (535)
Q Consensus 396 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~-li~---~~~~~g------~~~~A~~~~~~m~~~~~~~g~~p~~ 461 (535)
.+ ... ....|...++.+....+.|....|. . ++. ...+.+ +.+...+++....+ ..+-+.+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~---~~~~~ls~ 239 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH---SLGKQLSA 239 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH---HhcCCCCH
Confidence 43 332 3345666666665544444443111 1 111 111211 24444455553331 12223333
Q ss_pred HHHH---HHH----HHHHhcCChhhHHHHHHHHh
Q 009424 462 VNVI---NFF----KACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 462 ~~~~---~ll----~a~~~~g~~~~a~~~~~~~~ 488 (535)
.+-. +++ ..+.+.++++.|.+.++...
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 222 25667889999999887543
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.9 Score=35.45 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=53.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWE-TLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESD 476 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~ 476 (535)
.+.++.+++..++..+.-. .|...... .-...+.+.|+|.+|+.+|+++. +-.|....-..|+..|.....
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~------~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELE------ERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHcC
Confidence 3456777777777777653 33322222 12334567778888888888876 223444455566666665555
Q ss_pred hhhHHHHHHHHhcCCCCChh
Q 009424 477 MGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~ 496 (535)
-..-+.+-+++.+.+..|+.
T Consensus 93 D~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA 112 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH
Confidence 45555556666676665554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.9 Score=32.95 Aligned_cols=137 Identities=8% Similarity=0.055 Sum_probs=80.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHcCChh
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA---NLMMSWYVKEGNFD 404 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~ 404 (535)
.-.|.+++..++..+..... +..-++.+|--....-+-+-..+.++. -|--.|.... -.++.+|++.|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Lds---IGkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDS---IGKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHH---HGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHH---HhhhcCchhhcchHHHHHHHHHhcc--
Confidence 34577888888887776542 223455555444444444444444443 3333344332 234444444433
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
+.......+..+..+|+-+.-.+++++.. . .-+|++.....+..||.+.|+..++.+++
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~----k-n~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELK----K-NEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHh----h-ccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 44455666788888999999889999887 4 44788889999999999999999999999
Q ss_pred HHHhcCCCC
Q 009424 485 ALLRQPGYR 493 (535)
Q Consensus 485 ~~~~~~~~~ 493 (535)
.+..+.|..
T Consensus 144 ~~ACekG~k 152 (161)
T PF09205_consen 144 KEACEKGLK 152 (161)
T ss_dssp HHHHHTT-H
T ss_pred HHHHHhchH
Confidence 999998864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=2.1 Score=39.48 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=97.4
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhhHHH--HHHHHHhcCCHhh
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSV-FPGVTNLGYHA--MISSLARIGDIEG 370 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~--ll~~~~~~g~~~~ 370 (535)
-.|+..+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++... ....+..+|.. ..-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456777777777777654 4457777777778888888888888777777654 33333344433 2334457788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHccccHHHHHHHHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE---GGKPNSTSWETLAEGHIRERRILEALSCLKG 447 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (535)
|++.-++..+.+.. |...-.++...+-..|+..++.++..+-... +--.-..-|....-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88887777665533 5566666777777778888887776554321 0001122344444455666778888888876
Q ss_pred hH
Q 009424 448 AF 449 (535)
Q Consensus 448 m~ 449 (535)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 55
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.44 E-value=5.2 Score=35.35 Aligned_cols=203 Identities=11% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 293 (535)
|.--..+|-...++++|...+.+..+. ..-|...|.+ ...++.|.-+.+++.+ ++--+..|+--..+|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k---lsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK---LSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 333345556666777776655544321 1112222221 1234555555555553 1222335566667788
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hhHHHHHHHHHhcCCH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-----LGYHAMISSLARIGDI 368 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~ 368 (535)
.+|..+-|-..+++.-+ .....++++|+++|.+....-..-+. ..+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 88887777666665432 12334566666666655432111111 2344555556666666
Q ss_pred hhHHHHHHHHHh----cCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHccccHHH
Q 009424 369 EGMEKIFEEWLS----VKSSYDP-RIANLMMSWYVKEGNFDKAEAFFNSIIEEG---GKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 369 ~~a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
++|-..+.+-.. ..--++. ..|.+.|-.|....++..|.+.++.--+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 666554433211 1111122 235555666677778888999888744321 122566777788877 4466665
Q ss_pred HHHH
Q 009424 441 ALSC 444 (535)
Q Consensus 441 A~~~ 444 (535)
+-++
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.3 Score=39.69 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
|...+...|++++|..+|..+.+..++.+. ..+.-+.....+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444444444444443322221 2333344444444444444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.6 Score=39.27 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-C-CHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-Y-DPRIANLMM 394 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li 394 (535)
.|+.-+..| +.|++.+|...|....+.+|.-.- ..+-.|..++...|+++.|..+|..+.+.-++ | -+...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355555443 456688888888887776655332 35667888889999999999998888775433 1 245666777
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7788888899999998888764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.24 E-value=8.6 Score=37.30 Aligned_cols=369 Identities=13% Similarity=0.132 Sum_probs=203.4
Q ss_pred chHHHHHHHh--ccCCCCccHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHHccChHHHHHHHHHHHhc
Q 009424 72 KWNAIFRKLS--LMDNPQLGSASVLNDWEKG--GRSL------------TKWELCRVVKELRKFRRYKHALEVYDWMNNR 135 (535)
Q Consensus 72 ~~n~li~~~~--~~g~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 135 (535)
.|-.+..++. +.+.+. .|++.|...... +..| |-+-=+..+.++...|++.+|+.++++++..
T Consensus 79 ~~l~LF~~L~~Y~~k~~~-kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYR-KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hHHHHHHHHHHHHhhhHH-HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4556665553 457777 788777766544 2221 1122234556778999999999999988865
Q ss_pred C--CCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcC---------CHhHHHHHHHHHH-
Q 009424 136 G--ERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR---------MRGNAELLIDKMR- 203 (535)
Q Consensus 136 g--~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~- 203 (535)
= -....+..+|+.++-++++.=-++--......+. | -|--+|..|.+.= .+.-+..++..+.
T Consensus 158 llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~---p---dyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imq 231 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLY---P---DYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQ 231 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccC---h---HHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHH
Confidence 4 0144788899988888776533332111111111 1 2333333333221 1111222222222
Q ss_pred ---------------------HCCCCcCcchHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHH
Q 009424 204 ---------------------DKGYAVHSLPYNVMMTLYMKI--KEYDEVESMVSEMKEKGIRL----DVYSYNIWLSSC 256 (535)
Q Consensus 204 ---------------------~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p----d~~~~~~ll~~~ 256 (535)
..-+.|+ |..++...... .+.+++..+.+.+....+.+ =..+|..++...
T Consensus 232 hlfi~p~e~l~~~mq~l~~We~~yv~p~---~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 232 HLFIVPKERLPPLMQILENWENFYVHPN---YDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHhCCHhhccHHHHHHHHHHhhccCCc---hhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2222333 33333333221 14555555544443322111 246788899999
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcc-hHHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFS-------TMATMYIK----MGQVEKAEESLRRVESRITGRDRV-PYHYLL 324 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li 324 (535)
.+.++...|.+.+..+.. +.|+...-. .+.+..+. .-+..+=+.+|+......+ |.. .-..++
T Consensus 309 Vk~~~T~~a~q~l~lL~~---ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~ 383 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKI---LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLV 383 (549)
T ss_pred HHHHhHHHHHHHHHHHHh---cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHH
Confidence 999999999999887763 355544222 22233331 1123334455555543222 211 111122
Q ss_pred ---HHHHhcCC-HHHHHHHHHHHHhhCCCCchh----hHHHHHHHHHhc---CCHhhHHHHHHHHHhcCCCCC----HHH
Q 009424 325 ---SLYGSVGK-KEEVYRVWNLYRSVFPGVTNL----GYHAMISSLARI---GDIEGMEKIFEEWLSVKSSYD----PRI 389 (535)
Q Consensus 325 ---~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~----~~~ 389 (535)
.-+-+.|. -++|+++++.+.+.. ..|.. ++..+=.+|.+. ..+..-..+-+.+.+.|+.|- ...
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 22334455 788999999887742 22222 222222333322 234455555566667787653 345
Q ss_pred HHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHH
Q 009424 390 ANLMMSW--YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINF 467 (535)
Q Consensus 390 ~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~l 467 (535)
-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-.+..+.++++|++++.... |+..++.+=
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---------~n~~~~dsk 531 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP---------PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC---------CchhhHHHH
Confidence 5555554 4567888888766555554 67999999999999999999999999998655 666666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.16 E-value=3 Score=39.67 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..+.-+|.+.+++..|++.-...+..+.. |+...-.=..+|...|+++.|+..|+++++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444444555555555544444444322 333333344455555555555555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=6.2 Score=34.63 Aligned_cols=223 Identities=17% Similarity=0.111 Sum_probs=132.2
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIR-LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
+....+...+......... .....+......+...+.+..+...+...............+..+...+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443221 124555556666666677776666666655310123444555566666666677777777
Q ss_pred HHHHHHhcccCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC--CchhhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 304 SLRRVESRITGRDRVPYHYLLS-LYGSVGKKEEVYRVWNLYRSVFPG--VTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
.+.........+ ......... .+...|+.+.+...+.+.....+. .....+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777665432222 122222223 677778888888888777442221 1223334444446677888888888887766
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 381 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.........+..+...+...++.+.|...+......... ....+..+...+...+..+++...+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 543223566777788888888888888888888774222 23445555555556677888888888887
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.65 E-value=3.8 Score=38.98 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-----cC---------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhh
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRI-----TG---------RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g-----~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 354 (535)
.+.|.+.|++..|..-|++....- .. .-..+++.+.-+|.+.+++.+|+..-+......+. +.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 345666677777766666643210 00 01223444555566666666666666666554322 2233
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVK 382 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 382 (535)
.-.-..+|...|+++.|+..|+.+++..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3344555666666666666666665544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.6 Score=39.88 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE-----KGIRLDVYSYNIW 252 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~pd~~~~~~l 252 (535)
++..++..+...|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555566666666666655543 33455566666666666666666666655543 3455555444443
Q ss_pred H
Q 009424 253 L 253 (535)
Q Consensus 253 l 253 (535)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.47 E-value=4.9 Score=32.47 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 292 YIKMGQVEKAEESLRRVESRITGR--DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
..+.|++++|.+.|+.+..+-+.. ....--.++.+|.+.+++++|+..+++..+..|....+-|...+.+++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 345566666666666665442211 112333456666677777777777777666666655555666555555433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=5.6 Score=33.12 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-hHHHH--
Q 009424 283 TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL-GYHAM-- 358 (535)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l-- 358 (535)
..|.+-+. +++.+..++|+.-|..+.+.|..-=++ .---+.....+.|+...|...|+++-...+.|-.. -..-|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 456677778888888777655432111 11112334566777888888888777655555432 11111
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.-.+...|.+++.....+-+...+-..-...-.+|.-+-.+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223456667777666666554333322333344555556667777777777777665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.44 E-value=20 Score=39.38 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHH----HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc
Q 009424 243 RLDVYSYNIWLSS----CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV 318 (535)
Q Consensus 243 ~pd~~~~~~ll~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 318 (535)
+||...+.....+ +.....+++|.-.|+..-+. .--+.+|-.+|++.+|+.+..++.. ..|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSE---GKDEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHH
Confidence 4555554444433 34456666666666554321 1235567777777777777776632 12222
Q ss_pred h--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 319 P--YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 319 ~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
. -..|+.-+...+++-+|-++..+.... ..-.+..+++...+++|.++-..
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 2 245667777777777777766655431 12334445555556666555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.96 Score=33.28 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh-cCCCCChhhHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR-QPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~L~~~y 505 (535)
+.-++.+-++.+. ...+.|++....+.++||.+..|+..|.++++-+. +.|. ....|..+++-.
T Consensus 22 D~we~rr~mN~l~----~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLF----GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHHHH
Confidence 3445566666666 67788888899999999999999999999988776 4443 333666655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.18 E-value=9.7 Score=35.28 Aligned_cols=163 Identities=14% Similarity=0.155 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 284 TFSTMATMYIKMGQVE---KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+...++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+++.+.+.+|...-..++ ..+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e-~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE-SNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc-chHHHHHH
Confidence 4556666666666543 445555555433221 233444445555566777777777777766532222 23333333
Q ss_pred HH---HhcCCHhhHHHHHHHHHhcCCCCCHH--HHHHHHHHH---HHcC------ChhHHHHHHHHHHH-cCCCCCHhHH
Q 009424 361 SL---ARIGDIEGMEKIFEEWLSVKSSYDPR--IANLMMSWY---VKEG------NFDKAEAFFNSIIE-EGGKPNSTSW 425 (535)
Q Consensus 361 ~~---~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~---~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~ 425 (535)
.+ .... ...+...+..+....+.|... .-..++... .+.+ +++....+++...+ .+.+.+..+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 3322 334455555555444444432 111111111 1111 14445555554333 2222233332
Q ss_pred HH---H----HHHHHccccHHHHHHHHHHhH
Q 009424 426 ET---L----AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 426 ~~---l----i~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+ + ...+.+.+++++|.++|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 2 234557899999999998654
|
It is also involved in sporulation []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.11 E-value=6.3 Score=32.95 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
..+.+...+..++...+..+++.+.+.|++....+++. .++-+|.......+-.+ .+....+.++--.|...
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH--
Confidence 33444445555555566666666666665544444333 23333333222222111 11222233332223221
Q ss_pred CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
=...+..++..+...|++-+|+++.+... . -+...-..++.|..+.+|...--.+++-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~----~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYH----K----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcC----C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01134456666777777777777776653 1 1112224455566666665555555544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.07 E-value=5.4 Score=39.16 Aligned_cols=153 Identities=10% Similarity=0.009 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFF 410 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 410 (535)
.+...-++.-++..+ +.|+..+ .-++-+--....+.++++++++..+.|-. .+ .+....+..-..+
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAd-AYILLAEEeA~Ti~Eae~l~rqAvkAgE~----~l-------g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCAD-AYILLAEEEASTIVEAEELLRQAVKAGEA----SL-------GKSQFLQHHGHFW 247 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhH-HHhhcccccccCHHHHHHHHHHHHHHHHH----hh-------chhhhhhcccchh
Confidence 344444444444444 2333321 22333333456688899999887765421 00 0000000101111
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 411 NSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 411 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
+........|-...-..+...+.+.|+.++|++.|++|.+ +....-+......|+.++...+.+.++..++.+.-+.
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk---e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK---EFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh---hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 2222222223333344567777789999999999999982 1111113346778999999999999999999998665
Q ss_pred CCCChh--hHHH
Q 009424 491 GYRKEK--DYMS 500 (535)
Q Consensus 491 ~~~~~~--~~~~ 500 (535)
..+... .|+.
T Consensus 325 ~lpkSAti~YTa 336 (539)
T PF04184_consen 325 SLPKSATICYTA 336 (539)
T ss_pred cCCchHHHHHHH
Confidence 444433 5654
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=13 Score=36.41 Aligned_cols=159 Identities=9% Similarity=0.057 Sum_probs=103.3
Q ss_pred chH--HHHHHHHHhcC-----CHHHHHHHHHHHHh-hCCCCch-hhHHHHHHHHHh---------cCCHhhHHHHHHHHH
Q 009424 318 VPY--HYLLSLYGSVG-----KKEEVYRVWNLYRS-VFPGVTN-LGYHAMISSLAR---------IGDIEGMEKIFEEWL 379 (535)
Q Consensus 318 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~-~~~~~~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 379 (535)
..| ..++.+..... ..+.|+.+|.+... ...+|+- ..|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55666655522 36778888988872 1234433 333333322221 234567778888888
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
+.+.. |+.....+..++...|+++.|...|++....++. ...+|......+.-.|+.++|.+.+++.. ...|
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al------rLsP 403 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL------QLEP 403 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh------ccCc
Confidence 77755 8888888888888889999999999999885443 45667666777778999999999999977 3556
Q ss_pred CHH---HHHHHHHHHHhcCChhhHHHHHH
Q 009424 460 KPV---NVINFFKACEEESDMGSKEAFVA 485 (535)
Q Consensus 460 ~~~---~~~~ll~a~~~~g~~~~a~~~~~ 485 (535)
... .....+..|+..+ .+.+.+++-
T Consensus 404 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 404 RRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 432 3333344555544 455555553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.72 E-value=6.9 Score=36.72 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 223 KIKEYDEVESMVSEMKEK--GIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~--g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
...+.++|+..+..-+.+ +...-..++..+..+.+..|.++++..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 445566666666555443 111223455555666666666555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.67 E-value=6.2 Score=32.00 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=26.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 400 EGNFDKAEAFFNSIIEEGGK-PNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.++.+++..+++.|.-..++ |...++.. ..+.+.|+|++|+++|++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhh
Confidence 56666777776666653221 12222222 33556677777777777766
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.53 E-value=13 Score=35.56 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=124.3
Q ss_pred HHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCC-CCHHHHHHHHHHHHHcCCHh
Q 009424 115 ELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTL-KDRRVYGALLNAYVRARMRG 193 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~ 193 (535)
++-+..++..|+..+...++.. +-+..-|..-...|...|++++|.--...-.+.. .......-.-.++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~---pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC---PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC---ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 3445556667777777777765 2234444444455555566665544333222210 11111111112222222222
Q ss_pred HHHHHHH---------------HHHHCCC-CcCcchHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 009424 194 NAELLID---------------KMRDKGY-AVHSLPYNVMM-TLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS-- 254 (535)
Q Consensus 194 ~A~~~~~---------------~m~~~g~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~-- 254 (535)
+|...++ ....... +|...+|-.+- ..+.-.|+.++|.++-...++.+- ...+..+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence 2222222 1111111 12223343332 344566788888777766666531 122333333
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-------------HHHHHHHhcCCHHHHHHHHHHHHhc---ccCCCcc
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS-------------TMATMYIKMGQVEKAEESLRRVESR---ITGRDRV 318 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~ 318 (535)
++.-.++.+.|...|++..+ ..|+-..-- -=.+...+.|++..|.+.|.+.+.. ...++..
T Consensus 212 ~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 34456778888888887764 244433221 1223345677777777777776542 1223333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hh--HHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LG--YHAMISSLARIGDIEGMEKIFEEWLSVK 382 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 382 (535)
.|-.......+.|+.++|+.--+..... |. .. |..-..++...++|+.|.+-++...+..
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555566677777777766665442 22 11 2222233444566777777776665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.49 E-value=4.2 Score=32.00 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=48.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hhHHHHHHHHHhcCC
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN---LGYHAMISSLARIGD 367 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~ 367 (535)
+.+..|+++.|++.|.+...-- +.....||.-.+++--.|+.++|++=+++..+....... ..|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666654421 124455666666666666666666666655543111111 223333334455566
Q ss_pred HhhHHHHHHHHHhcC
Q 009424 368 IEGMEKIFEEWLSVK 382 (535)
Q Consensus 368 ~~~a~~~~~~~~~~~ 382 (535)
.+.|+.=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.2 Score=33.16 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 440 EALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+..+-++.+. ...+.|++....+.++||.+..|+..|.++++-+....-.....|..+++-.
T Consensus 28 e~rrglN~l~----~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLF----GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHT----TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHh----ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 4555666666 7778889999999999999999999999998887643222222676666544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.29 E-value=8.5 Score=36.13 Aligned_cols=165 Identities=14% Similarity=0.021 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-----CCcchH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-----RDRVPY 320 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~~~ 320 (535)
|-.+-+++-+.-++.+++.+-..-....|..|. -...-+|-.++...+.++++++.|+...+--.. .....+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444555555544443322232221 122334555566666777777777765432111 123467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCchhhH-----HHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CCHH--
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRS----VFPGVTNLGY-----HAMISSLARIGDIEGMEKIFEEWLSVKSS-YDPR-- 388 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~-- 388 (535)
..+-+.|.+..+.++|.-+..+..+ .+.+--..-| -.+.-++-..|.+.+|.+.-++..+..+. -|..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 7777778888888877766655433 1211111112 23344556667766666666554432211 1333
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 389 --IANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 389 --~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
....+.+.|...|+.+.|+.-|+..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3345667788888888887777654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.58 E-value=12 Score=33.44 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=94.1
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-----
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNP-NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV----- 330 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----- 330 (535)
.+.|++++|.+.|+.+..+....| ...+--.++-++.+.+++++|...+++..+.-+.-..+-|..-|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 456777777777777775432211 23344455566677777777777777776554443344455555554422
Q ss_pred --CCHH---HHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 009424 331 --GKKE---EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 331 --g~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
.+.. +|+.-|+++....|... -...|..-...+... =...=..+.+-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~---------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSR---------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCc---------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHH
Confidence 2233 33344444444333321 111222221111100 00011245677888899988
Q ss_pred HHHHHHHHHHcCCCCC---HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 406 AEAFFNSIIEEGGKPN---STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|..-+++|.+. ..-. ....-.+..+|.+.|..++|.+.-+-+.
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888875 2112 3345556678888888888877766665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.49 E-value=5.6 Score=33.89 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC--cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH--SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
..+..+...|.+.|+.++|++.|.++.+....+. ...+-.+|......+++..+.....+....--.+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566666777777777777777777766543332 23455566666667777766666655543211111111111111
Q ss_pred -----HHhcCCCHhHHHHHHHHhH
Q 009424 255 -----SCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 255 -----~~~~~g~~~~a~~~~~~~~ 273 (535)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1233566777666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.089 Score=43.15 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 445666667777777777777776665556777788888888887777777776621 1122234556666666
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 6666666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.41 E-value=15 Score=34.18 Aligned_cols=116 Identities=5% Similarity=-0.183 Sum_probs=57.2
Q ss_pred CCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhc-CCCcccCHhHHHHHHHHHHhhCCHhhH
Q 009424 84 DNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR-GERFRLSASDAAIQLDLIAKVHGVASA 162 (535)
Q Consensus 84 g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~~~li~~~~~~g~~~~A 162 (535)
|+.. +|...++++++. .+-|...+...=.+|...|+...-+..++.++-. ....+..+++.....-++..+|-+++|
T Consensus 117 g~~h-~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHH-EAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccc-HHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444 455555555442 3335555555555566666555555555555433 211222233333333344455666666
Q ss_pred HHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 009424 163 EDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDK 201 (535)
Q Consensus 163 ~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 201 (535)
++.-++..+. .-|..+-.++....--+|+..++.++..+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666555544 23444444555555555566665555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.25 E-value=4.4 Score=34.50 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDR--VPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
.+..+.+.|.+.|+.+.|.+.|.++.+....+.. ..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566667777777777777777777654333322 2344556666666677666666665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=4.1 Score=37.35 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=61.4
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-----CC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcc
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-----LK--DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSL 212 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 212 (535)
+.+..+...++..-....+++++...+-++... .+ ..++|-.++.- -++++++.+...=.+-|+-||-.
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchh
Confidence 334444445555555566777777766655543 11 22333333332 25667777777777778888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKG 241 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 241 (535)
+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888777777666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.03 E-value=24 Score=36.52 Aligned_cols=179 Identities=12% Similarity=-0.048 Sum_probs=92.5
Q ss_pred HhHHHHHHHHhHhCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-------cccCCCcchHHHHHHHHHhcC--
Q 009424 262 TEKMEGVFELMKVDKAVNPNWTTFSTMATM-YIKMGQVEKAEESLRRVES-------RITGRDRVPYHYLLSLYGSVG-- 331 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g-- 331 (535)
...+.++++...+.+.+.+-...-.....+ +....|.+.|..+|+...+ .| +......+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 445666666666432111111111122222 4455677777777777655 33 3334555666666643
Q ss_pred ---CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh-cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HcCCh
Q 009424 332 ---KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR-IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV----KEGNF 403 (535)
Q Consensus 332 ---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~ 403 (535)
+.+.|+.+|...-..+. |+.......+.-... ..+...|.++|....+.|.. ..+-.+..+|. -..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 56678888887776533 333322222221111 23567888888888777743 22222222222 12356
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|..++.+.-++| .|-..--...+..+.. ++++.+.-.+..+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 77788887777765 2222222222333334 66666666666666
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.63 Score=27.34 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=16.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777777644
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.85 E-value=29 Score=36.61 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=91.1
Q ss_pred hccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHh
Q 009424 81 SLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVA 160 (535)
Q Consensus 81 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~ 160 (535)
-+.|+++ +|..-|-+-... +.| +.+++-+....++.+-...++.+.+.| + .+......|+.+|.+.++.+
T Consensus 379 y~Kgdf~-~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g--l-a~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 379 YGKGDFD-EATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG--L-ANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HhcCCHH-HHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc--c-ccchhHHHHHHHHHHhcchH
Confidence 4578999 998888775432 222 245666777777888888888999988 3 44556678899999999999
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 009424 161 SAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237 (535)
Q Consensus 161 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 237 (535)
.-.+..+....... ..-....+..+-+.+-.++|..+-...... .. .+.-.+-..+++++|++.+..|
T Consensus 449 kL~efI~~~~~g~~-~fd~e~al~Ilr~snyl~~a~~LA~k~~~h-----e~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCDKGEW-FFDVETALEILRKSNYLDEAELLATKFKKH-----EW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCCCcce-eeeHHHHHHHHHHhChHHHHHHHHHHhccC-----HH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 99988887763100 112445566677777777777766554332 22 2222334566777777776544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.0074 Score=49.65 Aligned_cols=49 Identities=8% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
+.+.+.++.....++.+...+...+....+.++..|++.++.++..+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444443332233344444444444444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.25 E-value=12 Score=31.30 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=52.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH-HHHHH--HHHHHHcCCh
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR-IANLM--MSWYVKEGNF 403 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 403 (535)
++.+..++|+.-|..+...|...-. ...-.+.....+.|+...|...|+++-.....|-+. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445566666666666554433211 111222233445566666666666654443333221 11111 1122334555
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+....-.+-+...+-......-..|.-+-.+.|++.+|.++|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5544444444332222222233334444445555555555555555
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.15 E-value=4 Score=37.42 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
++++++.++..=+ ..|+-||..++..++..+.+.+++.+|.++...|+
T Consensus 115 ~pq~~i~~l~npI----qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPI----QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcc----hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445555555555 45555555555555555555555555555554444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.92 E-value=1 Score=26.48 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~ 236 (535)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.65 E-value=23 Score=33.93 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP---NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...+|..+...+.+.|.++.|...+..+...+... .....-.-...+-..|+..+|+..++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666666667777777776666666532111 22233333445555666666666666555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.61 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=10.6
Q ss_pred CHhHHHHHHHHHHccccHHHH
Q 009424 421 NSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A 441 (535)
|...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.25 E-value=20 Score=32.71 Aligned_cols=73 Identities=8% Similarity=-0.003 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh-ccCCCCCCCHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAA-EGAKSWRPKPVN 463 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~g~~p~~~~ 463 (535)
.+.....|..+|.+.+|.++-++....+.- +...|-.++..++..|+--.|.+-+..+.+. ..+.|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 445556677777777777777777664332 6666777777777777766666666655421 113455554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.85 E-value=14 Score=30.50 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=40.2
Q ss_pred hhCCHhhHHHHHhhCCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 155 KVHGVASAEDFFLSLPDTLKDR---RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 155 ~~g~~~~A~~~f~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
+.++.+++..+++.+.-..|.. .++.. ..+.+.|++.+|+++|+++.+.+ |....-..|+..|.....-..-.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHH
Confidence 3445555555555543332322 22222 23456677777777777765553 33333344444444443333333
Q ss_pred HHHHHHHHcCCCCC
Q 009424 232 SMVSEMKEKGIRLD 245 (535)
Q Consensus 232 ~~~~~m~~~g~~pd 245 (535)
..-+++.+.+-.|+
T Consensus 98 ~~A~evle~~~d~~ 111 (160)
T PF09613_consen 98 RYADEVLESGADPD 111 (160)
T ss_pred HHHHHHHhcCCChH
Confidence 33344555543333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.83 E-value=0.9 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+|..+...|...|++++|++.|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 356667777777777777777777777
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.54 E-value=0.77 Score=26.59 Aligned_cols=31 Identities=13% Similarity=0.413 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 376 EEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
++.++..+. +...|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444443 6777777777787888777775
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.73 E-value=13 Score=37.39 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=47.1
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|....+ |..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 34555555555443332 334455555555555666555555554322 34444555555554444
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
..+-...++.|.. + ....++...|+++++.+++..
T Consensus 712 ~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHh
Confidence 4444444433222 1 122234445555555555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.41 E-value=4.6 Score=30.20 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 229 EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 229 ~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+..+-++.+...++.|+..+..+.+++|.+.+++..|.++|+.++.+.+-..+ .|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHH
Confidence 45555666666677777777777778888888888888877777754332222 555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.26 E-value=22 Score=31.04 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCCHhHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG--GKPNSTSWETLAEG 431 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~ 431 (535)
|....++.+.+.+.+++++.....-++.++. |...-..+++.||-.|++++|..-++-.-+.. ..+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777788888888888877776654 66677778888888999998887777665432 22344556665554
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHH-H--HHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFK-A--CEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~-a--~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
-.... ++|.-=. .-|+.- ....|...+. + |...|.-+....+-+...+.++.+..
T Consensus 82 ea~R~------evfag~~----~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 EAARN------EVFAGGA----VPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHHH------HHhccCC----CCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 22111 1222111 222221 2334554444 2 22333444455555666677766544
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.22 E-value=12 Score=28.04 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 009424 121 RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLID 200 (535)
Q Consensus 121 ~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 200 (535)
.-++|..|-+++...+ .....+.-.-+..+...|++++|..+.+...- ||...|-+|-.. +.|..+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~--pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCY--PDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCCCC--chHHHHHHHHHH--hhccHHHHHHHHH
Confidence 3466777777776655 12333333344556777888888888888875 888888777553 5666666666666
Q ss_pred HHHHCC
Q 009424 201 KMRDKG 206 (535)
Q Consensus 201 ~m~~~g 206 (535)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 676666
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.20 E-value=27 Score=32.02 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-ccCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESR-ITGRDRVPYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (535)
.++..+...+|..+++.+++..-.++++..... +...|...|..+|..-.+.|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 444445555555555555555555555544332 33444555555555555555544444433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.39 E-value=5.9 Score=29.33 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHh
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV 274 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 274 (535)
-++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+.++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555556666666677777777777777777777777777776663
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.19 E-value=1.5 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=16.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|..+...|.+.|++++|++.|++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666667777777777777666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.15 E-value=36 Score=32.57 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR---DRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
...+|..+...+-+.|.++.|...+..+...+... +....-.-....-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666667777777777666665433211 222333334555556666666666666554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.09 E-value=54 Score=34.45 Aligned_cols=219 Identities=11% Similarity=0.098 Sum_probs=98.8
Q ss_pred chHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh-------HHHHHHHHHHHhcCCCcccCHh
Q 009424 72 KWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY-------KHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 72 ~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
.| ++|=-+.|+|+.+ +|+++..+.... .......|...++.+....+- +....-|++..+.. ...|++
T Consensus 114 ~W-a~Iyy~LR~G~~~-~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~--~~~Dpy 188 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYD-EALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS--TDGDPY 188 (613)
T ss_dssp HH-HHHHHHHTTT-HH-HHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT---TTS-HH
T ss_pred cH-HHHHHHHhcCCHH-HHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC--CCCChH
Confidence 44 6777889999999 999999665443 555566677888888765332 34555566666554 222333
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCH--HHHHHHHHHHHHcCC-----------HhHHHHHHHHHHHCCCCcCc
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDTLKDR--RVYGALLNAYVRARM-----------RGNAELLIDKMRDKGYAVHS 211 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~ 211 (535)
=... ....++|.-...- .+....++ ..|-.|. .++... +++..+...+.-+.-+.+ .
T Consensus 189 K~Av-Y~ilg~cD~~~~~------~~~V~~tiED~LW~~L~--~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~ 258 (613)
T PF04097_consen 189 KRAV-YKILGRCDLSRRH------LPEVARTIEDWLWLQLS--LVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-G 258 (613)
T ss_dssp HHHH-HHHHHT--CCC-S-------TTC--SHHHHHHHHHH--H---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHH-HHHHhcCCccccc------hHHHhCcHHHHHHHHHH--hhccCCCccccccccccHHHHHHHHHHhchhhccc-c
Confidence 2111 1111333221110 00001122 3344332 222221 223333333333332333 1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 291 (535)
...-.....+.-.|+++.|++.+.+ ..+...|.+.+...+.-|.-.+-.+... ..+.....-.|...-+..||..
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 1122344566778999999999876 3344567777777776654433332222 2222111011222567889999
Q ss_pred HHh---cCCHHHHHHHHHHHHh
Q 009424 292 YIK---MGQVEKAEESLRRVES 310 (535)
Q Consensus 292 ~~~---~g~~~~A~~~~~~m~~ 310 (535)
|.+ ..+..+|.++|--+..
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 987 4577888888876644
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.18 E-value=6.6 Score=30.66 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 440 EALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+..+-++... ...+.|++......++||.+.+|+..|.++++-+...-......|-.+++-.
T Consensus 67 EvrkglN~l~----~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLF----DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhh----ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445566666 7778899999999999999999999999999887744333333566555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.24 E-value=12 Score=32.18 Aligned_cols=75 Identities=11% Similarity=-0.028 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSK 480 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a 480 (535)
+.|.+.|-.+...+.--++..-..+...|. ..+.++++.++..+.+.. ..+-.+|+..+.+|.+.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~-~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS-NPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455566655555443324444444444333 455666676666666433 222355666677777777766666655
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.03 E-value=10 Score=32.98 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFK 469 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~ 469 (535)
.+.-++.+.+.+++++|+...+.-.+..+. |..+-..++..|+-.|+|++|..-++-.-+. +....+-..+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l--~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATL--SPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhc--CcccchHHHHHHHHHH
Confidence 445567788889999999998887776444 7777888999999999999999888877632 1223344556766665
Q ss_pred H
Q 009424 470 A 470 (535)
Q Consensus 470 a 470 (535)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.99 E-value=62 Score=35.06 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=29.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+-.|.+....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 33456677788888888888875555577777778777764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.37 E-value=42 Score=31.11 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=10.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
..+.++...|.. +|...+..+.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344455555543 34444444443
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.16 E-value=76 Score=33.96 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=112.2
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChh
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD 228 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 228 (535)
+-..|...|+++.|.++-..-++ .-..++-.-.+.|.+.+++..|-+++.++.+ +|..+.--+....+.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~--~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPD--ALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Confidence 34567778888888776554321 1112334444566777888888888887733 2444444444555544
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH-----HHHHH-hcCCCHh----HHHHHHHH--------hHhCCCCCCCHHHHHHHHH
Q 009424 229 EVESMVSEMKEKGIRLDVYSYNI-----WLSSC-GSQGSTE----KMEGVFEL--------MKVDKAVNPNWTTFSTMAT 290 (535)
Q Consensus 229 ~a~~~~~~m~~~g~~pd~~~~~~-----ll~~~-~~~g~~~----~a~~~~~~--------~~~~~~~~~~~~~~~~li~ 290 (535)
++..|-.=+-..++|...+-.. ++..| .+.++++ ++..-++. +.+......+.....+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Confidence 4333322222223333332222 12221 1222222 22211111 1100001122223344445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-------------hCC---------
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS-------------VFP--------- 348 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------~~~--------- 348 (535)
.....|+.+....+-.-|.+ |..++.-+.+.+.+++|++++..-.. ..+
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~ 583 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMA 583 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHH
Confidence 55666777776666555543 55667777777888888777654211 000
Q ss_pred ---CCchhhHHHHHHHHHhcC---CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 349 ---GVTNLGYHAMISSLARIG---DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 349 ---~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
..+..-...++..+.+.+ ....+....+.....-..-++..+|.++..|++..+-
T Consensus 584 ~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 584 QKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred ccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 001112234444444442 2333444444433333334788888888888765543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.39 E-value=66 Score=32.72 Aligned_cols=131 Identities=7% Similarity=0.092 Sum_probs=90.7
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWE-LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
+...|+.+|..--+..... .+..+++.++. -.|..+- |.....-=.+.|..+.+.++|+..++. ++.+...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~-~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~ 117 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVD-ALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWL 117 (577)
T ss_pred cccchHHHHhccCchhHHH-HHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHH
Confidence 4557888887666555555 66677777765 3555543 333333345678889999999988875 556666665
Q ss_pred HHHHHHH-hhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 009424 148 IQLDLIA-KVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDK 205 (535)
Q Consensus 148 ~li~~~~-~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 205 (535)
..+.... ..|+.+..++.|++.... -.....|...|.--..++++.....++++..+.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5555443 346777788888876543 345667888888888889999999999998875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.31 E-value=22 Score=35.92 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=46.2
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEK 373 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 373 (535)
+.|+++.|.++..+. -+..-|..|-++..+.+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445555555554433 2344455555555555555555555554432 3445555555555544444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444333321 122233444555555555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.18 E-value=13 Score=32.01 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-----CCCHHHHHHHHHHHHHcCCHhHHH
Q 009424 123 KHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-----LKDRRVYGALLNAYVRARMRGNAE 196 (535)
Q Consensus 123 ~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 196 (535)
+.|++.|-.+...+ .--++.....+...|. ..+.+++..++.+..+. .+|+..+.+|++.|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTP--ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCC--CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555555555 3334444444444444 45555565555443222 356677777777777777776663
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.69 E-value=4.5 Score=24.19 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444445555555555555554443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.65 E-value=44 Score=30.21 Aligned_cols=209 Identities=13% Similarity=0.152 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHH-HhcCCCHhHHHHHHHHhHhCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cccC
Q 009424 241 GIRLDVYSYNIWLSS-CGSQGSTEKMEGVFELMKVDKAVNPNW--TTFSTMATMYIKMGQVEKAEESLRRVES---RITG 314 (535)
Q Consensus 241 g~~pd~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 314 (535)
+-.||+..-|..-.+ -.+..++++|..-|++..+-.|-+.+. -....+|..+.+.|++++....+.+|.. +.+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445666554433222 123457888888888887543333222 2345677888888888888888888743 2222
Q ss_pred C--CcchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--
Q 009424 315 R--DRVPYHYLLSLYGSVGKKEEVYRVWNLYRS-----VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-- 385 (535)
Q Consensus 315 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 385 (535)
. +..+.|+++..-....+.+-..++|+.-.. .+....-.|-+-+...|...+.+....++++++....-.-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 2 234566777666666666555555554322 1111111244456667777777777777777665433211
Q ss_pred --C-------HHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHhHHHHHHHHH-----HccccHHHHHHHHHHhHH
Q 009424 386 --D-------PRIANLMMSWYVKEGNFDKAEAFFNSIIE-EGGKPNSTSWETLAEGH-----IRERRILEALSCLKGAFA 450 (535)
Q Consensus 386 --~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~ 450 (535)
| ..+|..-|.+|....+-..-..++++... +.-.|.+..... |+-| .+.|++++|..=|-++..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 23566667777777666666677776665 445555544433 3323 456777777765555553
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.40 E-value=4.8 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMR 203 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~ 203 (535)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555556666666666555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.12 E-value=40 Score=29.47 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 462 VNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
.||-.+-+-+...|+.++|..+|+..+..+.-+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 466666667777788888888887777655443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.06 E-value=23 Score=32.15 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK---- 399 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 399 (535)
|++++..++|.+++...-+--+.--+.+....-.-|-.|.+.+......++-.......-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555555555444333322222222233444445555666655555555544433222223335555544443
Q ss_pred -cCChhHHHHHH
Q 009424 400 -EGNFDKAEAFF 410 (535)
Q Consensus 400 -~g~~~~A~~~~ 410 (535)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 36666665554
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 8e-09
Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 10/227 (4%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRD---KGYAVHSLPYNVMMTLYMKIKEYDEVE 231
++ A + A L+ K + YN +M + + + E+
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM-EGVFELMKVDKAVNPNWTTFSTMAT 290
++ +K+ G+ D+ SY L G Q E E M + +
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE-----GLKLQALFTA 240
Query: 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV 350
+ + +++ +V+ + ++P S ++ + +
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
Query: 351 TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397
L + LA + +EK VK + L W
Sbjct: 301 QCLFEKQLHMELASRVCVVSVEKPTLPSKEVK-HARKTLKTLRDQWE 346
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 4e-07
Identities = 19/218 (8%), Positives = 50/218 (22%), Gaps = 8/218 (3%)
Query: 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI---FE 376
LL + + A + +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436
+ + N +M + ++G F + + + G P+ S+ + R+
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496
+ + + EG + + + + + + + P
Sbjct: 215 QDAGTIERCLEQMSQEG---LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 497 DYMS--LIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQ 532
S L + + + K + QL
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 6e-05
Identities = 20/211 (9%), Positives = 51/211 (24%), Gaps = 5/211 (2%)
Query: 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT 290
+ ++ L + S + + + ++
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQ-LSGQQQRLLAFFK 135
Query: 291 MYIKMGQVEKAEESLRRVESRITGR---DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF 347
+ Q+ A L + R Y+ ++ + G +E+ V + +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 348 PGVTNLGYHAMISSLARIGDIEGM-EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406
L Y A + + R G E+ E+ +++S +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437
+ P + L +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 70/413 (16%), Positives = 135/413 (32%), Gaps = 140/413 (33%)
Query: 121 RYKHALEVYDWMNNRGERFR--LSASDAAIQLDLIAKVHGVASAE-DFFLSLPDTL-KDR 176
+YK L V++ + F D D+ + ++ E D + D +
Sbjct: 17 QYKDILSVFE------DAFVDNFDCKDV---QDMPKSI--LSKEEIDHIIMSKDAVSGTL 65
Query: 177 RVYGALLN-------AYVRARMRGNAELLIDKM-----------------RDKGYAVHSL 212
R++ LL+ +V +R N + L+ + RD+ Y + +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 213 --PYNVMMTLYMKIKEYDEVESMVSEMK-EKGI----------------------RLDVY 247
YNV +++ Y ++ + E++ K +
Sbjct: 126 FAKYNVS-----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 248 SYNI-WLSSCGSQGSTEKMEGVFELM-KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL 305
+ I WL+ + E V E++ K+ ++PNWT+ S ++ ++ + L
Sbjct: 181 DFKIFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAEL 234
Query: 306 RR-VESRITGRDRVPY-HYLLSLYGSVGKKEEVY--RVWNL------------YRSVFPG 349
RR ++S+ PY + LL L V + WN ++ V
Sbjct: 235 RRLLKSK-------PYENCLLVL-------LNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 350 VTNLGYHAMISSLARIG--DIEGMEKIFEEWLSVKSSYDPR------------IANLM-- 393
++ + + E + ++L + PR IA +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 394 --MSW-YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443
+W K N DK +IIE +S L R+ + LS
Sbjct: 340 GLATWDNWKHVNCDK----LTTIIE-------SSLNVLEPAEYRKM--FDRLS 379
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 55/424 (12%), Positives = 114/424 (26%), Gaps = 113/424 (26%)
Query: 50 IKCSMS-QIH--SYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSAS----VLNDWEKGGR 102
++C M +I + + + + ++ + +S ++ + R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 103 SLTKWELCRVVKELRKFRRYKHALEVYD--WMNNRGERFRLSA------SDAAIQLDLIA 154
L K + Y++ L V F LS + L A
Sbjct: 236 RLLKS------------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 155 KVHGVASAEDFFLSL----------------PDTLKDRRVYGA-LLNAYVRARMRGNA-- 195
S + ++L P L + + + +R
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 196 -----ELLIDKMR---DKGYAV----------HSL---------PYNVMMTLYMKIKEYD 228
+ DK+ + V L P ++ ++ + + D
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 229 EVESMVSEMKEKG-IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN-------- 279
V +V+++ + + I + S K+E + L + V+
Sbjct: 404 -VMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHR--SIVDHYNIPKTF 459
Query: 280 PNWTTFSTMATMYI---------KMGQVEKAEE------SLRRVESRI--TGRDRVPYHY 322
+ Y + E+ R +E +I
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 323 LLSL------YGS-VGKKEEVY-RVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEK 373
+L+ Y + + Y R+ N P + NL + + L RI + E
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTDLLRIALMAEDEA 578
Query: 374 IFEE 377
IFEE
Sbjct: 579 IFEE 582
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.4 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.27 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.26 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.19 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.91 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.74 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.72 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.7 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.7 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.55 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.52 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.43 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.42 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.41 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.21 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.1 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.75 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.56 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.0 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.87 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.28 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.65 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.55 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.12 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.12 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.08 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.76 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.75 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.82 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.09 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.23 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.25 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.52 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.49 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.31 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.35 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.02 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.93 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 82.87 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.72 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.42 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=359.91 Aligned_cols=474 Identities=8% Similarity=-0.074 Sum_probs=376.4
Q ss_pred CCCCCCCCccccccchhhhhhhhccCccceeecccccccccccc--------ccccccchHHHHHHHhccCCCCccHHHH
Q 009424 22 PLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVDF--------ERRPMIKWNAIFRKLSLMDNPQLGSASV 93 (535)
Q Consensus 22 ~~~c~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~n~li~~~~~~g~~~~~a~~~ 93 (535)
...|.....++++|+.....+....+.. .....+.++|.+.. +.+++..|+.++.+|.+.|+++ +|+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~ 106 (597)
T 2xpi_A 30 YMTPPSMGALNANNSNSQLSTLTISPMT--YLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK-CAAFV 106 (597)
T ss_dssp ---------------CTTSCGGGGCGGG--GGC---------------------CHHHHHHHHHHHHHHTTCHH-HHHHH
T ss_pred hcCCccHHHHhhccccccccceeechhh--hhcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCch-HHHHH
Confidence 3345566667788888766555443322 22333455565442 3368889999999999999999 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-
Q 009424 94 LNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT- 172 (535)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~- 172 (535)
|++|.. ..||..++..++.+|.+.|++++|+++|+.+.. .+.+..+++.++.+|.++|++++|.++|+++...
T Consensus 107 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 180 (597)
T 2xpi_A 107 GEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL----YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180 (597)
T ss_dssp HHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG----GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC
T ss_pred HHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc----cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc
Confidence 999985 678999999999999999999999999998864 3567889999999999999999999999954331
Q ss_pred ----------------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH---------------------
Q 009424 173 ----------------LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN--------------------- 215 (535)
Q Consensus 173 ----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--------------------- 215 (535)
..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcC
Confidence 1258899999999999999999999999998864 11223322
Q ss_pred -----------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCC
Q 009424 216 -----------------VMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAV 278 (535)
Q Consensus 216 -----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 278 (535)
.++..|.+.|++++|.++|+++.+. ++|..+++.++.+|.+.|++++|.++|+++.+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 335 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-- 335 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--
Confidence 2355566788899999999988776 5789999999999999999999999999998642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHH
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 358 (535)
+.+..+|+.++.+|.+.|++++|..+|+++.+. ...+..+|+.++.+|.+.|++++|+++|+++....+. +..+|+.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 457778999999999999999999999999754 3346778999999999999999999999999886443 45688999
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 438 (535)
+.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCH
Confidence 99999999999999999999876543 7889999999999999999999999999886544 788999999999999999
Q ss_pred HHHHHHHHHhHHhccCCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 439 LEALSCLKGAFAAEGAKSWRPK--PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
++|+++|+++.+..++.+..|+ ..+|..+..+|.+.|++++|.++++++.+.++.....|..|..+|.+.|++++
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999854333467887 67899999999999999999999999998887766799999999999888887
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=332.92 Aligned_cols=441 Identities=10% Similarity=0.040 Sum_probs=382.7
Q ss_pred ceeecccccccccccccc----------ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009424 50 IKCSMSQIHSYGTVDFER----------RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKF 119 (535)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~----------~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 119 (535)
.+.++..|.+.|....+. ||..+|+.+..+|.+.|+++ +|+.+|+.+.. ..++..++..++.++.+.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYA-RAKCLLTKEDL--YNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHH-HHHHHHHHTCG--GGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHH
Confidence 456667777777765332 78899999999999999999 99999999865 478999999999999999
Q ss_pred cChHHHHHHHHHHHhcC-------------CCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCC-CHHHHHH----
Q 009424 120 RRYKHALEVYDWMNNRG-------------ERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLK-DRRVYGA---- 181 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g-------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~~~---- 181 (535)
|++++|.++|+.+.... ...+.+..+++.++..|.+.|++++|.++|+++.+..| +...|..
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 243 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSN 243 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHh
Confidence 99999999998532111 00234578999999999999999999999999876533 3344333
Q ss_pred ----------------------------------HHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 182 ----------------------------------LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 182 ----------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence 355677889999999999999876 57999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
++|+++|+++.+.+ +.+..+++.++.++.+.|++++|.++++.+.+. .+.+..+|+.++.+|.+.|++++|.++|++
T Consensus 322 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999876 347889999999999999999999999999863 366889999999999999999999999999
Q ss_pred HHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH
Q 009424 308 VESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP 387 (535)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 387 (535)
+.+.. +.+..+|+.++.+|.+.|++++|+++|+++....+. +..+|..++.+|.+.|++++|.++|+++.+..+. ++
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 98743 235779999999999999999999999999886543 5578999999999999999999999999887654 88
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC--HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEE----GGKPN--STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP 461 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~ 461 (535)
.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+ .+ +.+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-p~~~ 550 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL----LS-TNDA 550 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HS-SCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hC-CCCh
Confidence 99999999999999999999999999876 66787 78999999999999999999999999993 22 3378
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhH
Q 009424 462 VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~ 506 (535)
.+|..+..+|...|++++|.++++++.+..+.....+..|.++|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 899999999999999999999999999999888889999988884
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=270.60 Aligned_cols=185 Identities=10% Similarity=0.005 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC---------HHHHHHHHHHHHhhCCCCchhhH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK---------KEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|...|..||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444444444444444444444444444444444444444444443322 45555555555555555555555
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555566666666666666666666666666665555666666666666666666
Q ss_pred ccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 436 RRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 436 g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
|+.++|.+++++|. +.|..|+..||..++..|..
T Consensus 189 g~~d~A~~ll~~Mr----~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLR----DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHH----HHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHH----HhCCCcCHHHHHHHHHHHhc
Confidence 66666666666665 55555666666555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=268.50 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC---------hhHHHHHHHHHHHcCCCCCHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE---------YDEVESMVSEMKEKGIRLDVY 247 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~pd~~ 247 (535)
.+++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35666777777777777777777777777777777777777777766543 456777777777777777777
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 248 SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 248 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
||++||++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777777777777777777777777764 4677777777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI 365 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 365 (535)
++.|++++|.++|++|++.+..|+..||+.++..++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777666553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-27 Score=232.46 Aligned_cols=379 Identities=9% Similarity=-0.013 Sum_probs=315.4
Q ss_pred HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCC
Q 009424 113 VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARM 191 (535)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~ 191 (535)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 345667788888888888877765 445566667777788888888888888766544 4577899999999999999
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 271 (535)
+++|...|+++.+.. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998753 3345679999999999999999999999998874 23455677788888999999999999999
Q ss_pred hHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 009424 272 MKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 351 (535)
+.+.. +.+..+|..+...|.+.|++++|...|+++.+..+ .+...|..+...+...|++++|+..|++.....+. +
T Consensus 161 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 88642 55678999999999999999999999999987532 24567888889999999999999999999886554 3
Q ss_pred hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 352 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
..++..+...+...|++++|.+.++++.+..+. ++.+|..+...|.+.|++++|...|+++.+..+ .+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHH
Confidence 467888999999999999999999999887644 678899999999999999999999999998644 378899999999
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+.+.|++++|++.++++. ...| +..++..+...+.+.|++++|.+.++++++..+.....|..+...|.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHT------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 999999999999999998 3345 4678889999999999999999999999998877766888888887554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-26 Score=223.02 Aligned_cols=379 Identities=12% Similarity=0.017 Sum_probs=322.1
Q ss_pred HHHHhccCCCCccHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh
Q 009424 77 FRKLSLMDNPQLGSASVLNDWEKGGRSLT-KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK 155 (535)
Q Consensus 77 i~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~ 155 (535)
...+.+.|+++ +|+..|.++.+. .|+ ...+..+...+...|++++|...++..++.. +.+...+..+...|.+
T Consensus 6 a~~~~~~g~~~-~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~---p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFE-AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHH-HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 45667889999 999999998874 454 4556667778889999999999999999875 6678899999999999
Q ss_pred hCCHhhHHHHHhhCCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 156 VHGVASAEDFFLSLPDTLK-DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 156 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
.|++++|...|+++....| +..+|..+...+.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999866534 56789999999999999999999999998864 234556777888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC
Q 009424 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITG 314 (535)
Q Consensus 235 ~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 314 (535)
+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+..+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 9999874 3467889999999999999999999999998642 55678899999999999999999999999876432
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
.+..+|..+...|.+.|++++|+..|+++....+. +..+|..+...+.+.|++++|.+.++++.+..+ .+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHH
Confidence 24678999999999999999999999999986554 336788999999999999999999999988754 3788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHh
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEE 473 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~ 473 (535)
..+.+.|++++|...|+++.+..+ .+..+|..+...|.+.|++++|++.|+++. .+.|+ ...|..+...+..
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAI------RISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------TTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCCHHHHHhHHHHHHH
Confidence 999999999999999999987533 268899999999999999999999999999 35665 4455555555544
Q ss_pred cC
Q 009424 474 ES 475 (535)
Q Consensus 474 ~g 475 (535)
.|
T Consensus 386 ~~ 387 (388)
T 1w3b_A 386 MQ 387 (388)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-22 Score=201.38 Aligned_cols=310 Identities=11% Similarity=0.043 Sum_probs=194.0
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHH
Q 009424 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYV 187 (535)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 187 (535)
+..+...+.+.|++++|+.+|+.+++.. +.+...+..+...|...|++++|...|+++.+. +.+..+|..+...|.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3344444444444444444444444332 223344444444444444444444444443322 123455555555555
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCc---chHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHS---LPYNVM------------MTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIW 252 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~l 252 (535)
+.|++++|...|+++.+.+ +.+. ..|..+ ...+.+.|++++|+..|+++.+.. +.+..++..+
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 5555555555555555542 1112 333333 334677788888888888777654 3466777777
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc-hHHHH--------
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV-PYHYL-------- 323 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l-------- 323 (535)
..+|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|...|+++.+. .|+.. .+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 788888888888888888777532 456777888888888888888888888887653 34333 33333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 324 ----LSLYGSVGKKEEVYRVWNLYRSVFPGVT---NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 324 ----i~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
...|.+.|++++|+..|+++....+... ...+..+...+.+.|++++|...++.+.+..+. +..+|..+..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 338 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 6778888888888888888877554422 236777788888888888888888887765433 67788888888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 009424 397 YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLA 429 (535)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 429 (535)
|...|++++|...|+++.+..+. +...+..+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 88888888888888888774333 455555555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-22 Score=197.73 Aligned_cols=312 Identities=11% Similarity=0.030 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS 255 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~ 255 (535)
...|..+...|.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3444455555555555555555555544431 2234444455555555555555555555554443 2234444445555
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCC-H---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHhcccCCCcch
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPN-W---TTFSTMA------------TMYIKMGQVEKAEESLRRVESRITGRDRVP 319 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 319 (535)
|.+.|++++|.+.|+.+.+. .|+ . ..+..++ ..|.+.|++++|...|+++.+.. +.+...
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 55555555555555554431 222 2 2333332 22445555555555555554321 123344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH------
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM------ 393 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 393 (535)
+..+..+|.+.|++++|+..|+++....+. +..++..+...+...|++++|...++.+.+..+. +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 455555555555555555555555443222 2244445555555555555555555555443222 22233222
Q ss_pred ------HHHHHHcCChhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHH
Q 009424 394 ------MSWYVKEGNFDKAEAFFNSIIEEGGKPN----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPV 462 (535)
Q Consensus 394 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~ 462 (535)
...|.+.|++++|...|+++.+.... + ...|..+...+.+.|++++|++.++++.+ +.| +..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------~~p~~~~ 330 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ------MEPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------HCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcccHH
Confidence 55555566666666666665553211 1 23455555556666666666666666551 223 345
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHH
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLI 502 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~ 502 (535)
.|..+..+|...|++++|.+.++++++..+.....+..|.
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 5555555666666666666666666655555444444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-22 Score=203.10 Aligned_cols=414 Identities=9% Similarity=-0.032 Sum_probs=322.3
Q ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHH
Q 009424 70 MIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149 (535)
Q Consensus 70 ~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~l 149 (535)
+..|-..-..+.+.|+++ +|+..|+++.+.. ||..++..+..++...|++++|.+.++.+++.. +.+...+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYD-DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHH-HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHHHH
Confidence 345667778889999999 9999999999854 899999999999999999999999999999886 5667888999
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----------------------
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDK----------------------- 205 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------- 205 (535)
..+|.+.|++++|...|+++... +++......++..+.+......+.+.+..+...
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999987654 234444444444444433333333222211110
Q ss_pred ------------CC---------CcCcchHHHHHHHHHh---cCChhHHHHHHHHHHH-----c--CC------CCCHHH
Q 009424 206 ------------GY---------AVHSLPYNVMMTLYMK---IKEYDEVESMVSEMKE-----K--GI------RLDVYS 248 (535)
Q Consensus 206 ------------g~---------~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~--g~------~pd~~~ 248 (535)
.. +.+...+......+.. .|++++|+.+|+++.+ . .. +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 00 0113334444444444 8999999999999988 3 11 235677
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
+..+...+...|++++|...++.+.+. .|+..++..+...|...|++++|...|+++.+... .+...|..+...|.
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 888889999999999999999998864 34488899999999999999999999999876532 35668889999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
..|++++|+..|+++....+. +...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999886554 3467888899999999999999999999876544 67788999999999999999999
Q ss_pred HHHHHHHcCCC-CC----HhHHHHHHHHHHc---cccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhh
Q 009424 409 FFNSIIEEGGK-PN----STSWETLAEGHIR---ERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 409 ~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~ 479 (535)
.|+++.+.... ++ ...|..+...|.. .|++++|.+.++++.+ ..| +..++..+...+...|++++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK------LDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHhcCHHH
Confidence 99998764322 12 3488999999999 9999999999999983 234 46678888889999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHH
Q 009424 480 KEAFVALLRQPGYRKEKDYMSL 501 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~L 501 (535)
|.+.+++..+..+.....+..+
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHH
Confidence 9999999999888766655444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-22 Score=200.34 Aligned_cols=397 Identities=10% Similarity=0.016 Sum_probs=314.2
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHH
Q 009424 107 WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNA 185 (535)
Q Consensus 107 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~ 185 (535)
..+......+.+.|++++|+..|+.+++.. ++...+..+..+|.+.|++++|...|+++.+. +.+..+|..+...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 445567788899999999999999999976 36888999999999999999999999987665 4567899999999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-------------------CC---
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKG-------------------IR--- 243 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------------------~~--- 243 (535)
|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+ ..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999876 4455555566655554433333333332211110 00
Q ss_pred ---------------------C-CHHHHHHHHHHHh---cCCCHhHHHHHHHHhHh-----CCCC-------CCCHHHHH
Q 009424 244 ---------------------L-DVYSYNIWLSSCG---SQGSTEKMEGVFELMKV-----DKAV-------NPNWTTFS 286 (535)
Q Consensus 244 ---------------------p-d~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~ 286 (535)
| +...+......+. +.|++++|..+|+.+.+ .... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1 1333333333344 38999999999999886 2111 23456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
.+...|...|++++|...|+++.+... +...|..+...|...|++++|+..++++....+. +...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 899999999999999999999987654 4778889999999999999999999999886544 3467889999999999
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (535)
++++|...++.+.+..+. +...+..+...|.+.|++++|...|+++.+.... +...|..+...|...|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999887655 6778999999999999999999999999886443 67889999999999999999999999
Q ss_pred HhHHhccCCCCCC-CHHHHHHHHHHHHh---cCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 447 GAFAAEGAKSWRP-KPVNVINFFKACEE---ESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 447 ~m~~~~~~~g~~p-~~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
++.+..+...... ....+..+...+.. .|++++|.+.++++.+..+.....+..+..+|...|+.++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 9985433322111 14588888899999 9999999999999999887777789999999988888877
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-20 Score=189.19 Aligned_cols=408 Identities=9% Similarity=-0.021 Sum_probs=314.7
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
....|..+-..+.+.|+++ +|+..|+++.+.. +.+..++..+..++...|++++|++.++.+++.. +.+...+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 98 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFN-EAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHH
Confidence 3557888889999999999 9999999998852 2367888899999999999999999999999986 557888899
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC------CCcCcch---------
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG------YAVHSLP--------- 213 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~--------- 213 (535)
+...|...|++++|...|+.+.. +....+..+..+...+...+|...++++.... ..|+...
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLSL---NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999999975533 22333344556666777788898888885531 1111111
Q ss_pred -----------------HHHHHHHHH------------hcCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHh
Q 009424 214 -----------------YNVMMTLYM------------KIKEYDEVESMVSEMKEKGIRLD-------VYSYNIWLSSCG 257 (535)
Q Consensus 214 -----------------~~~li~~~~------------~~g~~~~a~~~~~~m~~~g~~pd-------~~~~~~ll~~~~ 257 (535)
+..+..++. ..|++++|+.+|+++.+.... + ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 111222222 124788999999999876422 2 235666777888
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVY 337 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 337 (535)
..|++++|...++.+.+. .|+..++..+...|...|++++|...|++..+... .+..+|..+...|...|++++|+
T Consensus 255 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999864 56788899999999999999999999999987543 35678999999999999999999
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009424 338 RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 417 (535)
..|+++....+. +...+..+...+...|++++|...++.+.+..+. +..++..+...|...|++++|...|+++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999987655 3367888999999999999999999999887644 67789999999999999999999999987642
Q ss_pred CC-----CCHhHHHHHHHHHHcc----------ccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHH
Q 009424 418 GK-----PNSTSWETLAEGHIRE----------RRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 418 ~~-----p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
.. .....+......+.+. |++++|++.|+++.+ ..| +...+..+...+...|++++|.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE------LDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 21 1222344555677777 999999999999993 334 4678888889999999999999
Q ss_pred HHHHHHhcCCCCChhh
Q 009424 482 AFVALLRQPGYRKEKD 497 (535)
Q Consensus 482 ~~~~~~~~~~~~~~~~ 497 (535)
+.+++..+..+.....
T Consensus 483 ~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 483 ELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHC--CHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999999988877663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-20 Score=189.53 Aligned_cols=393 Identities=10% Similarity=0.003 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHH
Q 009424 106 KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLN 184 (535)
Q Consensus 106 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~ 184 (535)
...+......+.+.|++++|++.|+.+++.. +.+...+..+...|.+.|++++|.+.|+++... +.+..+|..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3556777888999999999999999999986 567889999999999999999999999997665 457889999999
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCHHHH---------
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------GIRLDVYSY--------- 249 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~pd~~~~--------- 249 (535)
.|.+.|++++|...|+.+... |+ ..+..+..+...+...+|...++.+... ...|+....
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999744222 22 2233345566666678888888887543 122332222
Q ss_pred ---------------------HHHHHHHhcC--------CCHhHHHHHHHHhHhCCCCCCCH-------HHHHHHHHHHH
Q 009424 250 ---------------------NIWLSSCGSQ--------GSTEKMEGVFELMKVDKAVNPNW-------TTFSTMATMYI 293 (535)
Q Consensus 250 ---------------------~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~ 293 (535)
..+...+... |++++|..+++.+.+.. +.+. .++..+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHH
Confidence 2222222222 47899999999998632 3332 35667778889
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEK 373 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 373 (535)
..|++++|...|++..+. .|+...|..+...|...|++++|+..|+++....+. +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999874 466778889999999999999999999999887654 34678899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG 453 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (535)
.++.+.+..+. +...+..+...|...|++++|...|+++.+.... +...|..+...|...|++++|.+.|+++.+..+
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99999887654 6788999999999999999999999999987544 677899999999999999999999999984332
Q ss_pred CCC-CCCCHHHHHHHHHHHHhc----------CChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 454 AKS-WRPKPVNVINFFKACEEE----------SDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 454 ~~g-~~p~~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
... .......+......+... |++++|...++++.+..+.....+..+...|...|+..+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 221 111222344445567777 999999999999999988777799999999988887777
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-18 Score=167.53 Aligned_cols=318 Identities=11% Similarity=0.019 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS 255 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~ 255 (535)
+..|..+...+.+.|++++|...|++..+.. +.+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445555555666666666666666655542 2234555556666666666666666666665543 2244555556666
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcccCCCcch
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNP----NWTTFSTM------------ATMYIKMGQVEKAEESLRRVESRITGRDRVP 319 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 319 (535)
+...|++++|...++.+.+. .| +...+..+ ...+...|++++|...|+++.+..+ .+...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 156 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAEL 156 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHH
Confidence 66666666666666666532 23 23333333 4566777777777777777765432 34556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH--------
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN-------- 391 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------- 391 (535)
+..+...+...|++++|+..++++....+. +...+..+...+...|++++|...++.+.+..+. +...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 666777777777777777777777665333 3356667777777777777777777777665433 333322
Q ss_pred ----HHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHH
Q 009424 392 ----LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS----TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPV 462 (535)
Q Consensus 392 ----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~ 462 (535)
.+...+.+.|++++|...+++..+.... +. ..|..+...+...|++++|++.++++.+ ..| +..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~ 307 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ------MEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccHH
Confidence 2356688889999999999888875433 22 2344567788888999999999998883 244 566
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
++..+...+...|++++|.+.+++..+..+.....+..|..++...
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 7888888888899999999999999888877766777777776443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-18 Score=165.01 Aligned_cols=298 Identities=11% Similarity=0.022 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHH
Q 009424 108 ELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAY 186 (535)
Q Consensus 108 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~ 186 (535)
.+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|...|+++... +.+...|..+...|
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34445555566666666666666666553 334445555555555555555555555554433 22455666666666
Q ss_pred HHcCCHhHHHHHHHHHHHCCCC---cCcchHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 009424 187 VRARMRGNAELLIDKMRDKGYA---VHSLPYNVM------------MTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI 251 (535)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ 251 (535)
.+.|++++|...|++..+.. + .+...+..+ ...+...|++++|++.|+++.+.. +.+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 66666666666666665542 1 122333332 355666666666666666666553 235555666
Q ss_pred HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-chHH---------
Q 009424 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-VPYH--------- 321 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~--------- 321 (535)
+..++...|++++|...++.+.+. .+.+..++..+...|...|++++|...|++..+.. |+. ..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHH
Confidence 666666666666666666666642 24455666666666666666666666666665432 222 1221
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009424 322 ---YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMS 395 (535)
Q Consensus 322 ---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 395 (535)
.+...+.+.|++++|+..++++....+.... ..+..+...+...|++++|...++.+.+..+. +..++..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 314 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 1133345555555555555555544333111 11223444455555555555555555443222 4445555555
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 009424 396 WYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|.+.|++++|...|++..+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=167.92 Aligned_cols=293 Identities=12% Similarity=-0.076 Sum_probs=208.8
Q ss_pred HcCCHhHHHH-HHHHHHHCC---CCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHh
Q 009424 188 RARMRGNAEL-LIDKMRDKG---YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE 263 (535)
Q Consensus 188 ~~g~~~~A~~-~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 263 (535)
..|++++|.. .|++..... ...+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666766 666443321 11134567777777777777777777777777764 346667777777777788888
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHH---------------HHHHHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHY---------------LLSLYG 328 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~ 328 (535)
+|...|+.+.+.. +.+..++..+...|...|++++|...|+++.+..+.. ...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 8888877777532 4567777777788888888888888888776643221 112211 233344
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC-chhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
..|++++|+..|+++....+.. +..++..+...+...|++++|...++++.+..+. +..++..+...|.+.|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999998876553 3567888899999999999999999998876543 6788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCC-----C-CCCHHHHHHHHHHHHhcCChhhHH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKS-----W-RPKPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g-----~-~p~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
..|+++.+.... +...|..+...|.+.|++++|.+.|+++.+..+... . .....+|..+..++...|++++|.
T Consensus 272 ~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999999886433 678899999999999999999999999984332221 0 012578888999999999999999
Q ss_pred HHHHH
Q 009424 482 AFVAL 486 (535)
Q Consensus 482 ~~~~~ 486 (535)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=159.04 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444444555555555555555555554432 2233444444455555555555555555554432 123344444444
Q ss_pred HHhcCC-CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCH
Q 009424 255 SCGSQG-STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333 (535)
Q Consensus 255 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (535)
.+...| ++++|...|+...+.. +.+...|..+...|...|++++|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------------------------- 150 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFT-------------------------- 150 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHH--------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHH--------------------------
Confidence 455555 4555555555544321 22334444444445555555555555544
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
+....+.. ...+..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...|++.
T Consensus 151 ---------a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 151 ---------AAQLMKGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp ---------HHHHTTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------HHHhcccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44433221 123333444455555555555555554443322 3445555555555555555555555555
Q ss_pred HHcC--------CCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHH
Q 009424 414 IEEG--------GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 414 ~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
.+.. ...+..+|..+...|...|++++|++.++++.+ ..| +...+..+...+...|++++|.+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV------LIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------hCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 4321 011234555555555555555555555555552 112 3344555555555555555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHh
Q 009424 485 ALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 485 ~~~~~~~~~~~~~~~~L~~~y 505 (535)
++..+..+.....+..|...|
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHccCCCchHHHHHHHHHH
Confidence 555555544444444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-17 Score=157.77 Aligned_cols=278 Identities=8% Similarity=-0.013 Sum_probs=201.9
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHH
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVM 217 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 217 (535)
.+.+..+...+...+...|++++|.++|+++... +.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4556777888889999999999999999998655 3456677788899999999999999999998864 4467889999
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 218 MTLYMKIK-EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 218 i~~~~~~g-~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 99999999 9999999999999875 3467789999999999999999999999998642 445677777888999999
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
++++|...|++..+... .+...|..+...|...|++++|+..|++.....+....
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------------ 228 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------------------------ 228 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------------------------
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------------------------
Confidence 99999999998876432 34567777777778888888888877776653211000
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
......+..++..+...|.+.|++++|...|++..+.... +...|..+...|.+.|++++|.+.|+++.
T Consensus 229 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 229 ---EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp ---SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0001112344555555555555555555555555543322 44555555555556666666666666555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-16 Score=160.07 Aligned_cols=419 Identities=10% Similarity=0.020 Sum_probs=302.8
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
|+..|..++. +.+.|+.+ .|..+|+++.+. .| +...|...+..+.+.|+++.|.++|+.+++.. |+...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~-~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~----p~~~lw~ 83 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPID-KARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV----LHIDLWK 83 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHH-HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----CCHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHH-HHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CChHHHH
Confidence 5668999998 57789999 999999999884 45 56678899999999999999999999999875 2555565
Q ss_pred HHHHHH-HhhCCHhhHHH----HHhhCCC----CCCCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHHCCCCc
Q 009424 148 IQLDLI-AKVHGVASAED----FFLSLPD----TLKDRRVYGALLNAYVR---------ARMRGNAELLIDKMRDKGYAV 209 (535)
Q Consensus 148 ~li~~~-~~~g~~~~A~~----~f~~~~~----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p 209 (535)
..+... ...|+.+.|++ +|++... ...+...|...+....+ .|+++.|+.+|++..+. |
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P 160 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---P 160 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---h
Confidence 555433 35677777665 6665421 13467889888887665 78999999999999883 3
Q ss_pred Cc---chHHHHHHHH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHH
Q 009424 210 HS---LPYNVMMTLY-------------MKIKEYDEVESMVSEMK------EKG---IRLD--------VYSYNIWLSSC 256 (535)
Q Consensus 210 ~~---~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~pd--------~~~~~~ll~~~ 256 (535)
+. ..|....... .+.+++.+|..++.+.. +.. ++|+ ...|...+...
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 32 3343322211 12345677777776632 111 2444 24555555433
Q ss_pred hcC----CCH----hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcccC
Q 009424 257 GSQ----GST----EKMEGVFELMKVDKAVNPNWTTFSTMATMYIK-------MGQVE-------KAEESLRRVESRITG 314 (535)
Q Consensus 257 ~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~ 314 (535)
... ++. +.+..+|++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+
T Consensus 241 ~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 241 KSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 221 233 3677889988864 35678899999888876 79987 899999998752223
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
.+...|..++..+.+.|++++|..+|+++....+.-....|...+..+.+.|+++.|.++|+...+.... +...|....
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a 397 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAA 397 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHH
Confidence 3577899999999999999999999999998543322357888888888999999999999999876432 333333322
Q ss_pred HH-HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC--HHHHHHHHHHH
Q 009424 395 SW-YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK--PVNVINFFKAC 471 (535)
Q Consensus 395 ~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~--~~~~~~ll~a~ 471 (535)
.. +...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|+++.. .....|+ ...|...+...
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~---~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT---SGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---SCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHH
Confidence 22 34689999999999998875433 688999999999999999999999999993 1122332 34788888888
Q ss_pred HhcCChhhHHHHHHHHhcCCCCChh--hHHHHHHHh
Q 009424 472 EEESDMGSKEAFVALLRQPGYRKEK--DYMSLIGLT 505 (535)
Q Consensus 472 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~L~~~y 505 (535)
...|+.+.+..+.+++.+.-+.... ....+++-|
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~ 509 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFREEYEGKETALLVDRY 509 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGT
T ss_pred HHcCCHHHHHHHHHHHHHHCchhccCchHHHHHHHH
Confidence 8999999999999999887653211 334555555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=171.28 Aligned_cols=283 Identities=10% Similarity=0.053 Sum_probs=135.6
Q ss_pred HhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHH
Q 009424 154 AKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESM 233 (535)
Q Consensus 154 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 233 (535)
-+.|++++|.++++++.. | .+|..|..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..
T Consensus 14 ~~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 467889999999999965 4 49999999999999999999999653 4777999999999999999999997
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009424 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRIT 313 (535)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 313 (535)
++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 7766664 4567889999999999999999887773 367779999999999999999999999966
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH
Q 009424 314 GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393 (535)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 393 (535)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 47999999999999999999999988 2567899999999999999999555443 22345556678
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--ccHHHHHHHHHHhHHhccCCCCCC------CHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE--RRILEALSCLKGAFAAEGAKSWRP------KPVNVI 465 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~g~~p------~~~~~~ 465 (535)
+..|.+.|++++|..+++...... .-....|+-+..+|++- ++..+.+++|..-. ++.| +...|.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i------ni~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV------NIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS------CHHHHHHHHHTTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 999999999999999999888654 34678888888888764 56667777766443 4555 456788
Q ss_pred HHHHHHHhcCChhhHHHH
Q 009424 466 NFFKACEEESDMGSKEAF 483 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~ 483 (535)
.+.-.|.+.++++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 888888888999877753
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-18 Score=163.52 Aligned_cols=291 Identities=11% Similarity=-0.043 Sum_probs=226.2
Q ss_pred HHhhCCHhhHHH-HHhhCCCCCC-----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC
Q 009424 153 IAKVHGVASAED-FFLSLPDTLK-----DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 153 ~~~~g~~~~A~~-~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 226 (535)
+...|++++|.. .|++.....| +...|..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 8886655422 34567888889999999999999999998874 4467788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHH---------------HHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFST---------------MATM 291 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------li~~ 291 (535)
+++|++.|+++.+.+ +.+..++..+..++...|++++|...++.+.+.. +.+...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999998875 4477888889999999999999999999988632 222222221 2333
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhh
Q 009424 292 YIKMGQVEKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 370 (535)
+...|++++|...|+++.+..+.. +..+|..+...|...|++++|+..|+++....+. +...+..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 448999999999999998754322 4678889999999999999999999999886544 34678899999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC----------CHhHHHHHHHHHHccccHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP----------NSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~ 440 (535)
|...++++.+..+. +..++..+..+|.+.|++++|...|++..+..... ...+|..+..+|...|++++
T Consensus 270 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999887543 68899999999999999999999999988643221 16889999999999999999
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
|..++++..
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 998887554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-15 Score=152.54 Aligned_cols=379 Identities=10% Similarity=0.042 Sum_probs=296.9
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----ccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh----hCCHh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRK----FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK----VHGVA 160 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~----~g~~~ 160 (535)
.++..+......| +...+..+-..+.. .++++.|.+.|....+.| +......+...|.. .++.+
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4455555554433 66666667777777 789999999999988876 35566777778887 88999
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHH
Q 009424 161 SAEDFFLSLPDTLKDRRVYGALLNAYVR----ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVES 232 (535)
Q Consensus 161 ~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 232 (535)
+|.+.|++..+. .+...+..|-..|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++
T Consensus 97 ~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 97 QAVIWYKKAALK-GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999887653 467788888888888 789999999999998887 67778888888887 788999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 009424 233 MVSEMKEKGIRLDVYSYNIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEES 304 (535)
Q Consensus 233 ~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 304 (535)
.|++..+.| +...+..+...|.. .++.++|.+.|+...+. .+...+..+...|.. .++.++|...
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999988875 67778888888877 88999999999998863 367788888888886 7899999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc-----CCHhhHHHHH
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGS----VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI-----GDIEGMEKIF 375 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~ 375 (535)
|++..+.| +...+..+-..|.. .++.++|+..|++..+.+ +...+..+...+... ++.++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99887653 45566667777777 789999999999987653 234566777777776 8999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHHHHHHHHh
Q 009424 376 EEWLSVKSSYDPRIANLMMSWYVKEG---NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEALSCLKGA 448 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 448 (535)
+...+.+ +...+..+...|.+.| +.++|.+.|++..+. .+...+..+...|.. .+++++|+++|+++
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9988875 5677788888888766 788999999998875 367888888888888 78999999999999
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHhcCCCC---ChhhHHHHHHHh
Q 009424 449 FAAEGAKSWRPKPVNVINFFKACEE----ESDMGSKEAFVALLRQPGYR---KEKDYMSLIGLT 505 (535)
Q Consensus 449 ~~~~~~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~L~~~y 505 (535)
. +.+ +...+..+-..+.. .++.++|...+++..+.++. +......|..++
T Consensus 394 ~----~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 394 A----EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp H----HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred H----hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 8 444 46677777777777 78999999999999988865 222444444444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=161.36 Aligned_cols=272 Identities=10% Similarity=-0.087 Sum_probs=202.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 44557777777778888888888888777764 3466777778888888888888888888877532 45577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccCC---------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-chhhHHHHH
Q 009424 290 TMYIKMGQVEKAEESLRRVESRITGR---------DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-TNLGYHAMI 359 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll 359 (535)
..|.+.|++++|...|+++.+..+.. ....+..+...+...|++++|+..|+++....+.. +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 88888888888888888876642210 12223345778888999999999999998876552 456788899
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 439 (535)
..+...|++++|...++++.+..+. +..+|..+..+|.+.|++++|...|++..+..+. +..+|..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999887644 7889999999999999999999999999886443 5888999999999999999
Q ss_pred HHHHHHHHhHHhccCCCC-------CCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 009424 440 EALSCLKGAFAAEGAKSW-------RPKPVNVINFFKACEEESDMGSKEAFVAL 486 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~-------~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 486 (535)
+|.+.|+++.+..+..+- ..+...|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999854333211 01356788888899999999888877654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=186.36 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHH---CCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRD---KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIW 252 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~l 252 (535)
..+||+||++|++.|++++|.++|++|.+ .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 578899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCH-hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC------cchHHHHHH
Q 009424 253 LSSCGSQGST-EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD------RVPYHYLLS 325 (535)
Q Consensus 253 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~ 325 (535)
|+++++.|+. +.|.++|++|.+ .|+.||..+|++++.++.+.+-++.+.++. .+..|+ ..+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~-----P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVK-----PTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGC-----CCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhC-----cccCCCCCCcccccchHHHHH
Confidence 9999998874 788899999986 588999999998887766654333333332 233333 445556667
Q ss_pred HHHhcC
Q 009424 326 LYGSVG 331 (535)
Q Consensus 326 ~~~~~g 331 (535)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-20 Score=190.82 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=127.5
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcch
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP 213 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 213 (535)
......+++++|++|+++|++++|.++|++|.+. .||+++||+||++|++.|++++|.++|++|.+.|+.||++|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 4455678999999999999999999999776422 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC------HHHHH
Q 009424 214 YNVMMTLYMKIKEY-DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN------WTTFS 286 (535)
Q Consensus 214 ~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ 286 (535)
||++|.++++.|+. ++|.++|++|.+.|+.||..+|+++++++.+.+ .++..+++. .++.|+ ..+..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~--P~f~p~~~~~~~~~t~~ 276 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVK--PTFSLPPQLPPPVNTSK 276 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGC--CCCCCCCCCCCCCCCCT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhC--cccCCCCCCcccccchH
Confidence 99999999999985 789999999999999999999999987665543 344444443 234443 55667
Q ss_pred HHHHHHHhcC
Q 009424 287 TMATMYIKMG 296 (535)
Q Consensus 287 ~li~~~~~~g 296 (535)
.|.+.|.+.+
T Consensus 277 LL~dl~s~d~ 286 (1134)
T 3spa_A 277 LLRDVYAKDG 286 (1134)
T ss_dssp TTHHHHCCCS
T ss_pred HHHHHHccCC
Confidence 7888888766
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-15 Score=149.64 Aligned_cols=349 Identities=12% Similarity=0.022 Sum_probs=293.9
Q ss_pred cccchHHHHHHHhc----cCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----ccChHHHHHHHHHHHhcCCCcc
Q 009424 69 PMIKWNAIFRKLSL----MDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRK----FRRYKHALEVYDWMNNRGERFR 140 (535)
Q Consensus 69 ~~~~~n~li~~~~~----~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 140 (535)
|+.++..+-..|.. .++++ .|+..|++..+.| +...+..+-..+.. .+++++|.+.|....+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLT-QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 45566666667776 78888 9999999998764 56677778888888 899999999999999876
Q ss_pred cCHhHHHHHHHHHHh----hCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCcCcc
Q 009424 141 LSASDAAIQLDLIAK----VHGVASAEDFFLSLPDTLKDRRVYGALLNAYVR----ARMRGNAELLIDKMRDKGYAVHSL 212 (535)
Q Consensus 141 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 212 (535)
++.....+..+|.. .+++++|.+.|++..+. .+...+..|-..|.. .++.++|.+.|++..+.| +..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 35566677778887 78999999999987653 467888888888988 789999999999999887 788
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHH
Q 009424 213 PYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTT 284 (535)
Q Consensus 213 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 284 (535)
++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|..+|+...+. .+...
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a 257 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIA 257 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 89999999988 899999999999999876 56777778888875 88999999999999853 45677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 285 FSTMATMYIK----MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV-----GKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 285 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
+..+..+|.. .++.++|...|++..+.| +...+..+...|... ++.++|+..|++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 8888888888 899999999999987653 455777788888877 89999999999998754 23456
Q ss_pred HHHHHHHHhcC---CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 356 HAMISSLARIG---DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 356 ~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
..+...|...| +.++|.+.+++..+.+ ++..+..+...|.. .+++++|...|++..+.| +...+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 67777777766 7899999999998875 78889999999999 899999999999998864 67788888
Q ss_pred HHHHHc----cccHHHHHHHHHHhH
Q 009424 429 AEGHIR----ERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~----~g~~~~A~~~~~~m~ 449 (535)
...|.+ .++.++|.++|+++.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888887 899999999999999
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-15 Score=153.24 Aligned_cols=392 Identities=9% Similarity=0.033 Sum_probs=284.3
Q ss_pred CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHH
Q 009424 105 TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLN 184 (535)
Q Consensus 105 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~ 184 (535)
|...|..++. +.+.|+++.|..+|+.+++. ++.+...+...+..+.+.|++++|+.+|++.....|++..|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 6667888887 47789999999999999987 4778889999999999999999999999999888788888988885
Q ss_pred HH-HHcCCHhHHHH----HHHHHHH-CCCCc-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCHHH
Q 009424 185 AY-VRARMRGNAEL----LIDKMRD-KGYAV-HSLPYNVMMTLYMK---------IKEYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 185 ~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
.. ...|+.++|.+ +|++... .|..| +...|...+....+ .|++++|..+|++.++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45688877766 7776654 35444 45678887776655 7889999999999988321111233
Q ss_pred HHHHHHHH-------------hcCCCHhHHHHHHHHh------HhCC--CCCCC--------HHHHHHHHHHHHhc----
Q 009424 249 YNIWLSSC-------------GSQGSTEKMEGVFELM------KVDK--AVNPN--------WTTFSTMATMYIKM---- 295 (535)
Q Consensus 249 ~~~ll~~~-------------~~~g~~~~a~~~~~~~------~~~~--~~~~~--------~~~~~~li~~~~~~---- 295 (535)
|....... ...++++.|..++..+ .+.. .++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43322211 1345677777777652 2111 13444 35666666543332
Q ss_pred CCH----HHHHHHHHHHHhcccCCCcchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCCchhhHH
Q 009424 296 GQV----EKAEESLRRVESRITGRDRVPYHYLLSLYGS-------VGKKE-------EVYRVWNLYRS-VFPGVTNLGYH 356 (535)
Q Consensus 296 g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~-~~~~~~~~~~~ 356 (535)
++. +.+..+|++..... +.+...|......+.+ .|+++ +|+.+|++... ..+. +...|.
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~ 325 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYF 325 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 232 47788899887653 3467788888888875 68876 99999999986 3222 346788
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDP-RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG-HIR 434 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~ 434 (535)
.++..+.+.|++++|..+|+.+++..+. +. .+|..++..+.+.|++++|.++|++..+.... +...|...... +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHH
Confidence 8999999999999999999999886433 33 58999999999999999999999999875322 23333322222 336
Q ss_pred cccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh----hHHHHHHHhHhhh
Q 009424 435 ERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK----DYMSLIGLTDEAV 509 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~L~~~y~~~~ 509 (535)
.|+.++|.++|+++.+ ..| +...|..++....+.|+.++|+.+|++.++.++.++. .|...++.....|
T Consensus 404 ~~~~~~A~~~~e~al~------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLK------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp TCCHHHHHHHHHHHHH------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred cCChhHHHHHHHHHHH------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999983 345 4678889999999999999999999999988665432 5656566554444
Q ss_pred h
Q 009424 510 A 510 (535)
Q Consensus 510 ~ 510 (535)
.
T Consensus 478 ~ 478 (530)
T 2ooe_A 478 D 478 (530)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=161.26 Aligned_cols=283 Identities=11% Similarity=-0.003 Sum_probs=219.1
Q ss_pred hhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 009424 160 ASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238 (535)
Q Consensus 160 ~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 238 (535)
..+...+...+.. ..+...|..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|++.|+++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444433332 2345668888899999999999999999998764 4467889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-----------WTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 239 ~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
+.. +.+..++..+..+|...|++++|...++++.+. .|+ ..++..+...|.+.|++++|...|++
T Consensus 127 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred hcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 874 346788999999999999999999999998753 222 22344567889999999999999999
Q ss_pred HHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 308 VESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 308 m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
+.+..+.. +..+|..+...|...|++++|+..|+++....+. +..++..+..+|...|++++|...++++.+..+. +
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-F 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 98754321 5778999999999999999999999999887554 4568899999999999999999999999887644 6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----------CCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-----------PNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..++..+..+|.+.|++++|...|++..+.... .+...|..+..++...|+.+.+.++..+-.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 889999999999999999999999998864211 136789999999999999998888776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=155.29 Aligned_cols=267 Identities=9% Similarity=0.050 Sum_probs=128.8
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
++..+|..|..++.+.|+++ +|++.|.+ .+|..+|..++.+|...|++++|+..+....+.. .++.+.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~-eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~----~~~~i~~ 98 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVK-EAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHH-HHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----ccchhHH
Confidence 34459999999999999999 99999975 3688899999999999999999999888777642 3477888
Q ss_pred HHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 148 IQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
.++.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ----------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 999999999999999988863 67789999999999999999999999976 4799999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
++|.+.+..+ .+..+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++.
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988 278999999999999999999966655433 2333455799999999999999999998
Q ss_pred HHhcccCCCcchHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCC------chhhHHHHHHHHHhcCCHhhHHHH
Q 009424 308 VESRITGRDRVPYHYLLSLYGSV--GKKEEVYRVWNLYRSVFPGV------TNLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
..... +.....|+-+--+|++- ++..+.+++|..- ..+.+ +...|.-+.-.|.+.++++.|...
T Consensus 233 aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 86432 33455777777777765 2344444444311 11111 124677777777777888777654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-16 Score=148.64 Aligned_cols=270 Identities=7% Similarity=-0.098 Sum_probs=187.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHH
Q 009424 211 SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT 290 (535)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 290 (535)
...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHH
Confidence 3445555556666666666666666665543 2245555566666666666666666666665431 345556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCCcchHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYL--------------LS-LYGSVGKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
.|...|++++|...|+++.+.... +...+..+ .. .+...|++++|+..++++....+. +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 666666776776666666553221 22222222 22 366778889999999998886554 45678
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...|+++.+.... +...|..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 88888999999999999999988876543 6788899999999999999999999998876443 678899999999999
Q ss_pred ccHHHHHHHHHHhHHhccCCCCCC-------CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 436 RRILEALSCLKGAFAAEGAKSWRP-------KPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 436 g~~~~A~~~~~~m~~~~~~~g~~p-------~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
|++++|.+.++++.+..+...... +...|..+..++...|++++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999984322211000 3567888888999999999999887644
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=149.31 Aligned_cols=265 Identities=8% Similarity=-0.046 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
.|..+...+.+.|++++|..+|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44555556666666666666666665543 2345566666666666666666666666666653 235556666666666
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcccCCCcchHHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTM--------------AT-MYIKMGQVEKAEESLRRVESRITGRDRVPYHY 322 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 322 (535)
..|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|...++++.+... .+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 6677777766666666431 1122222222 22 36677888888888888876532 35667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN 402 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 402 (535)
+...|...|++++|+..++++....+. +...+..+...+...|++++|...++++.+..+. +..++..+...|.+.|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc
Confidence 888888888888888888888776443 3467788888888999999999999988776543 67788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCC-----------CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 403 FDKAEAFFNSIIEEGGKP-----------NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+++|.+.|++..+..... +...|..+...+.+.|++++|.+++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999888753332 46788889999999999999999887665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-16 Score=142.67 Aligned_cols=249 Identities=11% Similarity=0.094 Sum_probs=122.8
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDR--RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 229 (535)
-....|++..|...++......|+. ...-.+...|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3444566666666665554432222 2334445566666666666654433 123445555555555666666666
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 230 VESMVSEMKEKGIRL-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 230 a~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (535)
|++.++++...+..| +...+..+..++...|++++|.+.++. +.+...+..++..|.+.|+.++|.+.|+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666665554333 333344444555566666666655543 234555555555566666666666666555
Q ss_pred HhcccCCCcchHH---HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC
Q 009424 309 ESRITGRDRVPYH---YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY 385 (535)
Q Consensus 309 ~~~g~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 385 (535)
.+. .|+....+ ..+..+...|++++|+.+|+++....+. +...++.+..++.+.|++++|...++++++..+.
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 543 23322111 1112222334555555555555544222 2344444555555555555555555555444332
Q ss_pred CHHHHHHHHHHHHHcCChhH-HHHHHHHHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDK-AEAFFNSIIE 415 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 415 (535)
++.++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444445555555555443 3444444444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-14 Score=149.03 Aligned_cols=344 Identities=9% Similarity=0.050 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHH
Q 009424 104 LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALL 183 (535)
Q Consensus 104 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li 183 (535)
-|+.-.+..+++|...|...+|+++++.++..+..+.-+....+.++....+. +..+..+..++... -+ ...+.
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA 1056 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIA 1056 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHH
Confidence 35555568899999999999999999999966544556677777777766666 45555555555543 22 33466
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHh
Q 009424 184 NAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE 263 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 263 (535)
..+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++.+.|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 667778888888888887521 1222233322 667777777777644 24567777788888888888
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
+|...|.+. .|...|..++..|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 888877443 356677777888888888888888887665533 34333445777777777777533332
Q ss_pred HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh
Q 009424 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNST 423 (535)
Q Consensus 344 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 423 (535)
..++...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++.. +..
T Consensus 1191 ----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 ----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred ----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 1223345556777778888888888888763 367778888888888888888777652 667
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIG 503 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~ 503 (535)
+|..+-.+|...|++..|........ .++..+..++..|.+.|.+++|..+++..+.........|.-|..
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii---------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV---------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh---------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 77777777777777777776555332 345556677777777777888877777766555333335666666
Q ss_pred HhHh
Q 009424 504 LTDE 507 (535)
Q Consensus 504 ~y~~ 507 (535)
+|++
T Consensus 1323 LyaK 1326 (1630)
T 1xi4_A 1323 LYSK 1326 (1630)
T ss_pred HHHh
Confidence 6644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=141.00 Aligned_cols=275 Identities=9% Similarity=0.027 Sum_probs=207.3
Q ss_pred HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCH
Q 009424 113 VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMR 192 (535)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 192 (535)
++-....|.+..|+...+.+.... ..........+...|...|+++.|...++... .|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~--~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSS--APELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS--CHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccC--ChhHHHHHHHHHHHcCCCcH
Confidence 445566788888888877654433 22222344566788999999999998887643 36778888899999999999
Q ss_pred hHHHHHHHHHHHCCCCcC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 009424 193 GNAELLIDKMRDKGYAVH-SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 271 (535)
++|++.++++...+..|+ ...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988775554 45566666889999999999999987 45788888999999999999999999999
Q ss_pred hHhCCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 009424 272 MKVDKAVNPNWTT---FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP 348 (535)
Q Consensus 272 ~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 348 (535)
+.+. .|+... ..+++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|++.....+
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9864 354321 123344455568999999999999876 335777899999999999999999999999988755
Q ss_pred CCchhhHHHHHHHHHhcCCHhh-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 349 GVTNLGYHAMISSLARIGDIEG-MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 349 ~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
. +..++..++..+...|+.++ +.++++++.+..+. ++.+ .+...+.+.++++.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~----~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFI----KEYRAKENDFDRLV 285 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHH----HHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHH----HHHHHHHHHHHHHH
Confidence 4 44678888888889999865 67888888876654 3432 33344444444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-13 Score=146.71 Aligned_cols=374 Identities=11% Similarity=0.057 Sum_probs=282.5
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHH
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKGGR--SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLD 151 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~ 151 (535)
...+++|...|.+. +|+++|+...-.+- .-+...-+.++....+. +...+.+......+. ...-+..
T Consensus 989 s~~vKaf~~aglp~-EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~---------d~~eIA~ 1057 (1630)
T 1xi4_A 989 SVTVKAFMTADLPN-ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY---------DAPDIAN 1057 (1630)
T ss_pred HHHHHHHHhCCCHH-HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---------cHHHHHH
Confidence 45678899999999 99999999884321 12233444455555555 556666665554321 1333667
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1058 Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 78889999999999999753 3344454543 7789999999998662 4688999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009424 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR 311 (535)
Q Consensus 232 ~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 311 (535)
+.|.+. -|...|..++.+|.+.|++++|.+.+...++. .++....+.++.+|++.+++++...+.+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI~----- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHHh-----
Confidence 999553 37788899999999999999999999988753 3454455569999999999986444431
Q ss_pred ccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 312 ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 356677888999999999999999999985 36999999999999999999999976 2778999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKA 470 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a 470 (535)
.+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++... ++.|... .|+-+..+
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL------~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL------GLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh------ccChhHhHHHHHHHHH
Confidence 99999999999999998876533 377788899999999999999999999988 5555443 55444444
Q ss_pred HHh--cCChhhHHHHHHHHhcCCCCC-------hhhHHHHHHHhHhhhhcccc
Q 009424 471 CEE--ESDMGSKEAFVALLRQPGYRK-------EKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 471 ~~~--~g~~~~a~~~~~~~~~~~~~~-------~~~~~~L~~~y~~~~~~~~~ 514 (535)
+.+ -++..++.+.|.. +.++++ ...|.-++-.|.+.|.++.+
T Consensus 1324 yaKy~peklmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHhCCHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 443 3445555555543 223322 22688899999887777763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-14 Score=141.26 Aligned_cols=389 Identities=11% Similarity=-0.098 Sum_probs=203.0
Q ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcC----C
Q 009424 70 MIKWNAIFRKLSLMDNPQLGSASVLNDWEKG-----G--RSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRG----E 137 (535)
Q Consensus 70 ~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~ 137 (535)
+..||.|-..+...|+.+ +|++.|++..+. + ..| ...+|..+...+...|++++|...++.+.+.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~-eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNE-AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 557888888888999999 999999876442 1 123 35678888888999999999999888876532 0
Q ss_pred Cc-ccCHhHHHHHHHHHHhh--CCHhhHHHHHhhCCCCCC-CHHHHHHHHHH---HHHcCCHhHHHHHHHHHHHCCCCcC
Q 009424 138 RF-RLSASDAAIQLDLIAKV--HGVASAEDFFLSLPDTLK-DRRVYGALLNA---YVRARMRGNAELLIDKMRDKGYAVH 210 (535)
Q Consensus 138 ~~-~~~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~~~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 210 (535)
.. .....++.....++.+. +++++|...|++..+..| +...+..+... +...++.++|++.|++..+.+ +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01 12234444444444444 356777777776654423 34444444433 234466667777776665543 223
Q ss_pred cchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH
Q 009424 211 SLPYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS 286 (535)
Q Consensus 211 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 286 (535)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...+++..+.. +.+..++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 285 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHH
Confidence 4444444444433 345667777777666653 3355666667777777777777777777766532 34455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
.+...|...+....+.. ...........+..++|+..|++.....+.. ...+..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNL-FRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTT-CCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-hhhhhhHHHHHHHhc
Confidence 55555432211000000 0000000011123556666676666644332 245666667777777
Q ss_pred CHhhHHHHHHHHHhcCCCCCHH--HHHHHHH-HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPR--IANLMMS-WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
++++|...|++..+....+... .+..+.. .+...|+.++|+..|++..+. .|+...+ .+..+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~---------~~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREK---------EKMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHH---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH---------HHHHHHHHH
Confidence 7777777777766554332211 1222222 223456777777777776653 2332221 122233444
Q ss_pred HHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 444 CLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 444 ~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+++...+ . -+.+..+|..+-..+...|++++|.+.+++.++.++..+.
T Consensus 418 ~~~~~l~----~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 418 IAKMRLS----K-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHH----H-CC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHH----h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 5555541 1 1224456666777777777777777777777776655433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-14 Score=141.14 Aligned_cols=376 Identities=8% Similarity=-0.042 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHhcC-----CC-cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-------
Q 009424 106 KWELCRVVKELRKFRRYKHALEVYDWMNNRG-----ER-FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT------- 172 (535)
Q Consensus 106 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~------- 172 (535)
...|+.+...+...|+.++|++.|++.++.- .. .+....+++.+...|...|++++|...|++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4457777777778888888888887765421 00 1112233444444555555555555444432110
Q ss_pred --CCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHCCCCcCcchHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCC
Q 009424 173 --LKDRRVYGALLNAYVRA--RMRGNAELLIDKMRDKGYAVHSLPYNVMMTL---YMKIKEYDEVESMVSEMKEKGIRLD 245 (535)
Q Consensus 173 --~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~pd 245 (535)
.....+++.+..++.+. +++++|+..|++..+.. +-+...+..+... +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01223333333333332 23445555555444432 1112222222222 122344444454444444432 122
Q ss_pred HHHHHHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchH
Q 009424 246 VYSYNIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPY 320 (535)
Q Consensus 246 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~ 320 (535)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...|.+.|++++|...|++..+. .|+ ..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 3333333222222 234444555544444321 333444444445555555555555555444432 122 2223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE 400 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 400 (535)
..+...|...+.... .. ............+..+.|...++...+..+. +...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 322222211100000 00 0000000011123467788888888776544 567888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCCh
Q 009424 401 GNFDKAEAFFNSIIEEGGKPNST--SWETLAE-GHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM 477 (535)
Q Consensus 401 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~ 477 (535)
|++++|+..|++..+....|... .+..+.. .+.+.|++++|++.|+++. .+.|+....... .
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal------~i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV------KINQKSREKEKM---------K 412 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH------HSCCCCHHHHHH---------H
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCcccHHHHHH---------H
Confidence 99999999999998864433221 1222222 3457799999999999999 466765443332 3
Q ss_pred hhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccccCCCC
Q 009424 478 GSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDED 519 (535)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~~~~i~ 519 (535)
+.+.++++..++..+.....|..|..+|...|+..++....+
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445667777777777777799999999999999888555444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-14 Score=129.67 Aligned_cols=223 Identities=16% Similarity=0.110 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC-CCCCC----HHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK-AVNPN----WTTFSTM 288 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l 288 (535)
|..+...+...|++++|++.|++..+.. .+..++..+..++...|++++|...++...+.. ...++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444444444444444444443 344444444444444444444444444443210 00011 3455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI 368 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 368 (535)
...|.+.|++++|...|++..+. .|+ ...+...|++++|+..++.+....+. +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCH
Confidence 55555556666666555555442 222 12344455566666666665553211 124455666666666666
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHh
Q 009424 369 EGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
++|...++.+.+..+. +..++..+...|.+.|++++|...|++..+.... +...|..+...|.+.|++++|.+.|+++
T Consensus 156 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666655433 5566666666777777777777777766664332 4666666667777777777777777776
Q ss_pred HH
Q 009424 449 FA 450 (535)
Q Consensus 449 ~~ 450 (535)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-14 Score=130.89 Aligned_cols=226 Identities=12% Similarity=0.044 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC--C----cch
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR--D----RVP 319 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~----~~~ 319 (535)
...+..+...+...|++++|...|+...+.. .+..++..+...|...|++++|...|++..+..... + ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4567788889999999999999999998743 778899999999999999999999999987654321 2 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK 399 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 399 (535)
|..+...|...|++++|+..|++.....+. ...+...|++++|...++.+.+..+. +...+..+...|..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence 889999999999999999999999886544 23466778999999999998876433 56788899999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChh
Q 009424 400 EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMG 478 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~ 478 (535)
.|++++|...|++..+.... +...|..+...|...|++++|++.|+++.+ ..| +...|..+..++...|+++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE------KDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999986544 788999999999999999999999999993 334 4678888889999999999
Q ss_pred hHHHHHHHHhcCC
Q 009424 479 SKEAFVALLRQPG 491 (535)
Q Consensus 479 ~a~~~~~~~~~~~ 491 (535)
+|.+.+++..+..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=121.32 Aligned_cols=198 Identities=18% Similarity=0.118 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL 324 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 324 (535)
+...+..+...+.+.|++++|...|+...+.. +.+...+..+...|.+.|++++|...|++..+..+ .+...|..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 33444444444455555555555555544321 33444455555555555555555555555443211 1233444444
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH
Q 009424 325 SLYGSV-----------GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393 (535)
Q Consensus 325 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 393 (535)
..+... |++++|+..|++..+..|. +...+..+...+...|++++|...++++++.. .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 6777777777777665443 23456666677777777777777777777666 467777777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+|...|++++|+..|++..+..+. +...+..+...+.+.|++++|++.|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777777777777777777765443 56667777777777777777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-13 Score=124.93 Aligned_cols=247 Identities=11% Similarity=0.014 Sum_probs=140.3
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc--chHHHHHHHHH
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR--VPYHYLLSLYG 328 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~ 328 (535)
.....+...|++++|...|+...+.. +.+...+..+...|...|++++|...|++..+....++. ..|..+...|.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34445555566666666666555421 223335555555666666666666666665542211111 12555666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
..|++++|+..|++.....+. +...+..+...+...|++++|...+++..+..+. +...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666654333 2245666666666777777777777666554322 45555555523333457777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCC------HHHHHHHHHHHHhcCChhh
Q 009424 409 FFNSIIEEGGKPNSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPK------PVNVINFFKACEEESDMGS 479 (535)
Q Consensus 409 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~------~~~~~~ll~a~~~~g~~~~ 479 (535)
.|++..+.... +...|..+...+...|+ +++|...++++.+.. .-.|+ ...|..+...+...|++++
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC---APGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH---GGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH---hcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777664332 45566666666666666 666777777666321 11122 1355556666777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 480 KEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
|.+.+++..+..+.+......+....
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 77777777777766655555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=127.49 Aligned_cols=246 Identities=9% Similarity=-0.037 Sum_probs=165.0
Q ss_pred cCCHhHHHHHHHHHHHCCC---CcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 189 ARMRGNAELLIDKMRDKGY---AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
.|++++|+..|+++.+... +.+..+|..+...+...|++++|++.|++..+.+ +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4677788888887776531 1135667777777888888888888888877764 33567777778888888888888
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 266 EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
...|+.+.+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|+..+++...
T Consensus 97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888877532 445677788888888888888888888887663 35554444555555666888888888877766
Q ss_pred hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 009424 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY---DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 422 (535)
..+.. ...+ .++..+...++.++|...+..+.+..... +..++..+...|.+.|++++|...|++..+.. |+
T Consensus 173 ~~~~~-~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~- 247 (275)
T 1xnf_A 173 KSDKE-QWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH- 247 (275)
T ss_dssp HSCCC-STHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT-
T ss_pred cCCcc-hHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch-
Confidence 53332 2223 35666667777777888777765543211 14667777888888888888888888887643 32
Q ss_pred hHHHHHHHHHHccccHHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCL 445 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~ 445 (535)
.+.....++...|++++|++.+
T Consensus 248 -~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 -NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -TCHHHHHHHHHHHHHHHC----
T ss_pred -hHHHHHHHHHHHHHHHhhHHHH
Confidence 1333355666777777777665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-13 Score=119.85 Aligned_cols=198 Identities=11% Similarity=0.020 Sum_probs=106.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 44445555555555555555555555555442 2244445555555555555555555555554321 33444555555
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHH
Q 009424 290 TMYIKM-----------GQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358 (535)
Q Consensus 290 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 358 (535)
..|.+. |++++|...|++..+..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 667777777766655321 134456666666677777777777777766655 344556666
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
..++...|++++|...++.+.+..+. +...+..+...+.+.|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 67777777777777777776665543 56666667777777777777777766543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=118.37 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+..+...|.+.|++++|...|++..+.... +...|..+...|...|++++|.+.++++.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444444444332211 23334444444444444444444444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-12 Score=114.76 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=10.1
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|..+...+...|++++|.+.++++.
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333344444444433333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-12 Score=118.93 Aligned_cols=244 Identities=11% Similarity=0.087 Sum_probs=147.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD--VYSYNIWLSSC 256 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~~~~~ll~~~ 256 (535)
+......+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|++.|++..+.+-.|+ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444556667777777777777776653 23444677777777777777777777777776331111 22366666777
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
...|++++|...|+...+.. +.+..+|..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776532 3455677777777777777777777777665431 12334455554233334477777
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCC---HhhHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHHcCChhHH
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGD---IEGMEKIFEEWLSVK-SSYD------PRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A 406 (535)
+..|+++.+..+.. ...+..+...+...|+ .++|...++++.+.. ..|+ ..+|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777776654432 3445556666666666 666666666665432 1122 14566666777777777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~l 428 (535)
.+.|++..+..+. +...+..+
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHhcCcc-HHHHHHHh
Confidence 7777777665433 44444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-12 Score=116.71 Aligned_cols=210 Identities=13% Similarity=0.037 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+...|..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHH
Confidence 5678888899999999999999999998642 55788999999999999999999999999987532 35678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 326 LYGSVGKKEEVYRVWNLYRSVFPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
.|...|++++|+..|+++...+..|+ ...+..+...+...|++++|...++++.+.... +...+..+...|...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987323333 367888899999999999999999999887644 6888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVIN 466 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ 466 (535)
+|...|+++.+... .+...+..+...+...|++++|.++++++. ...|+...+..
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~ 247 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLK------RLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTSHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH------HHCCCCHHHHH
Confidence 99999999987544 367888899999999999999999999998 34566554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-12 Score=113.25 Aligned_cols=202 Identities=12% Similarity=0.043 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666666666666666665542 2234556666666666666666666666665543 224455555555
Q ss_pred HHhcC-CCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCH
Q 009424 255 SCGSQ-GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333 (535)
Q Consensus 255 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (535)
.+... |++++|...++.+.+....+.+...+..+...|.+.|++++|...|+++.+... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 66666 666666666666554111122244555555555555555555555555544321 1233444444445555555
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
++|...++++....+..+...+..+...+...|+.+.+..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555544443321122233333344444444444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-12 Score=124.11 Aligned_cols=244 Identities=8% Similarity=0.018 Sum_probs=119.0
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcccCCCcchHHHHHHHHHh
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ-VEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (535)
.+...+.+.|++++|+..++.+.+.. +.+..+|+.+...|.+.|+ +++|+..|++..+..+ .+...|..+..++..
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Confidence 33334444444444444444444321 2234444444444444443 4555554444443221 133344444444445
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCChhHH--
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK-EGNFDKA-- 406 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-- 406 (535)
.|++++|+..|+++....+. +...|..+..++...|++++|...++++++..+. +...|+.+..+|.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHH
Confidence 55555555555555443332 2244555555555555555555555555554443 45555555555555 3443554
Q ss_pred ---HHHHHHHHHcCCCCCHhHHHHHHHHHHccc--cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC------
Q 009424 407 ---EAFFNSIIEEGGKPNSTSWETLAEGHIRER--RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES------ 475 (535)
Q Consensus 407 ---~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g------ 475 (535)
+..|++..+..+. +...|..+...+...| ++++|++.+.++. .-..+...+..+...+.+.|
T Consensus 257 ~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~------~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 257 EREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDLQ------PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 3555555554333 4555666665565555 4566666555542 11223344555555555542
Q ss_pred ---ChhhHHHHHHHH-hcCCCCChhhHHHHHHHhH
Q 009424 476 ---DMGSKEAFVALL-RQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 476 ---~~~~a~~~~~~~-~~~~~~~~~~~~~L~~~y~ 506 (535)
.+++|.++++++ .+.++.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 235666666666 5555554445555555553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=113.53 Aligned_cols=224 Identities=12% Similarity=0.009 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDVYSYN 250 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~~~~ 250 (535)
+..++..+-..|.+.|++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56667777777778888888888888777744 55677777777777 788888888888777765 566777
Q ss_pred HHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcchHHH
Q 009424 251 IWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESRITGRDRVPYHY 322 (535)
Q Consensus 251 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 322 (535)
.+...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 77777777 78888888888777753 266677777777777 778888888877776643 4455666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh----cCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 323 LLSLYGS----VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR----IGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 323 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666 677777777777766542 23455566666666 777777777777766654 255666666
Q ss_pred HHHHH----cCChhHHHHHHHHHHHcC
Q 009424 395 SWYVK----EGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 395 ~~~~~----~g~~~~A~~~~~~m~~~~ 417 (535)
.+|.+ .+++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66766 677777777777766643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-13 Score=124.82 Aligned_cols=220 Identities=8% Similarity=-0.075 Sum_probs=131.4
Q ss_pred hcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIR---LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~---pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 299 (535)
..|++++|++.|+++.+.... .+..++..+...+...|++++|...|+.+.+.. +.+..+|..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 134566667777777777777777777776532 445667777777777777777
Q ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 300 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
+|...|++..+..+ .+...|..+...|...|++++|+..|+++....+... .....+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777765422 2455666677777777777777777777766543322 22233334455566666666666555
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP---NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..... +...+. ++..+...++.++|...+++..+..... +...|..+...|.+.|++++|.+.|+++.
T Consensus 172 ~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 172 EKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44322 222222 4555555556666666665554321100 13455566666666666666666666666
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-13 Score=120.69 Aligned_cols=209 Identities=13% Similarity=0.046 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
.|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|+..|+++....+. +...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444444555555555555555544321 123334444455555555555555555555444322 2244455555555
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
..|++++|.+.++++.+.... +...+..+...|.+.|++++|...++++.+.... +...|..+...+...|++++|++
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666666655554432 4555666666666666666666666666554322 45566666666666666666666
Q ss_pred HHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHH
Q 009424 444 CLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSL 501 (535)
Q Consensus 444 ~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L 501 (535)
.|+++.+ . ...+..++..+...+...|++++|.+.++++.+..+.....+..+
T Consensus 181 ~~~~~~~----~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 181 QFAAVTE----Q-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHH----H-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHH----h-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 6666662 1 122345566666666666666666666666666665554444333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-11 Score=113.00 Aligned_cols=222 Identities=12% Similarity=0.010 Sum_probs=114.8
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcchHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESRITGRDRVPYHYLL 324 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 324 (535)
+..+...+...|++++|...|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33333444444444444444444443 1233344444444444 444444444444444332 333444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh----cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 325 SLYGS----VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR----IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 325 ~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
..|.. .+++++|+..|++....+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 455555555555444432 22344445555555 555566666665555543 44455555555
Q ss_pred HHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 397 YVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 397 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++.. +.+ | ...+..+-
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~----~~~--~-~~a~~~l~ 225 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC----ELE--N-GGGCFNLG 225 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH----HTT--C-HHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH----hCC--C-HHHHHHHH
Confidence 555 666666666666665542 44555566666666 666667776666666 222 2 44555555
Q ss_pred HHHHh----cCChhhHHHHHHHHhcCCCC
Q 009424 469 KACEE----ESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 469 ~a~~~----~g~~~~a~~~~~~~~~~~~~ 493 (535)
..+.. .+++++|.+.+++..+.++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 55655 66677777777766666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=130.37 Aligned_cols=275 Identities=9% Similarity=0.031 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-
Q 009424 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH----SLPYNVMMTLYMKIKEYDEVESMVSEMKEK----GIRL- 244 (535)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p- 244 (535)
.....+......+.+.|++++|...|++..+.+ +.+ ...|..+...+...|++++|...|++..+. +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666677777777777777777776653 112 245666777777777777777777765432 1111
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQ--------------------VEK 300 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~ 300 (535)
...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2345666666777777777777777765532100112 3356667777777777 777
Q ss_pred HHHHHHHHHhccc----CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-c----hhhHHHHHHHHHhcCCHhh
Q 009424 301 AEESLRRVESRIT----GR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-T----NLGYHAMISSLARIGDIEG 370 (535)
Q Consensus 301 A~~~~~~m~~~g~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~g~~~~ 370 (535)
|...+++..+... .+ ...++..+...|...|++++|+..+++........ + ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 7777766533210 01 12245566666677777777777776665421111 1 1255566666666677777
Q ss_pred HHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccccHHH
Q 009424 371 MEKIFEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-KPN----STSWETLAEGHIRERRILE 440 (535)
Q Consensus 371 a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~ 440 (535)
|...+++..+.... .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 76666665532111 01 34555666666666666666666666554210 011 3455556666666666666
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
|.+.++++.
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-12 Score=117.66 Aligned_cols=197 Identities=10% Similarity=0.045 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 293 (535)
|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence 3334444444444444444444444332 1233444444444444444444444444444321 233444444555555
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEK 373 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 373 (535)
..|++++|...|+++.+.. +.+...|..+...+...|++++|+..++++....+. +...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544322 123334444455555555555555555555443222 22344555555556666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.++.+.+.... +..++..+...|.+.|++++|...|+++.+.
T Consensus 181 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66655544322 4555666666666666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-10 Score=117.09 Aligned_cols=426 Identities=10% Similarity=-0.010 Sum_probs=278.9
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC---hHHHHHHHHHHHhcCCCcccCHh
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRR---YKHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
.|.-+|..+|..+.+.+... .+..+|++++.. .+.....|..-+..-.+.+. ++.+.++|+..+.... .+++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~-~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-~~~sv~ 140 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWK-QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-GNNDLS 140 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-CCCCHH
T ss_pred CCHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-CCCCHH
Confidence 46778888888888888888 888888888774 33355566677777777777 8888888888887641 135666
Q ss_pred HHHHHHHHHHhhCCH--------hhHHHHHhhCCC-----CCCCHHHHHHHHHHHH---------HcCCHhHHHHHHHHH
Q 009424 145 DAAIQLDLIAKVHGV--------ASAEDFFLSLPD-----TLKDRRVYGALLNAYV---------RARMRGNAELLIDKM 202 (535)
Q Consensus 145 ~~~~li~~~~~~g~~--------~~A~~~f~~~~~-----~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 202 (535)
.+..-+....+.+++ +..+++|+.... ...+...|...+.... ..++++.++.+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 776666666555543 334467765321 1234567887776543 334577788888887
Q ss_pred HHCCCCcCcchHHHHHHHHHhcCC-------------hhHHHHHHHHHHHc--CCC---------------C-----C--
Q 009424 203 RDKGYAVHSLPYNVMMTLYMKIKE-------------YDEVESMVSEMKEK--GIR---------------L-----D-- 245 (535)
Q Consensus 203 ~~~g~~p~~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~~--g~~---------------p-----d-- 245 (535)
.......-..+|......-...+. ++.|...+.++.+. ++. | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 753111112333332222211111 22333444443221 111 1 0
Q ss_pred -HHHHHHHHHHHhcCC-------CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcccCCC
Q 009424 246 -VYSYNIWLSSCGSQG-------STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE-ESLRRVESRITGRD 316 (535)
Q Consensus 246 -~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~ 316 (535)
...|...+.---..+ ..+.+..+|++.... ++-+...|-..+..+.+.|+.++|. .+|++.... ++.+
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 123444443322222 123456778887764 4667888888888888999999996 999998763 3345
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------CCc------------hhhHHHHHHHHHhcCCHhhHHHHH
Q 009424 317 RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP---------GVT------------NLGYHAMISSLARIGDIEGMEKIF 375 (535)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~~------------~~~~~~ll~~~~~~g~~~~a~~~~ 375 (535)
...|-..+...-+.|++++|.++|+.+....+ .|+ ...|...+....+.|.++.|+.+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55678888889999999999999999876421 121 236778888888889999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccC
Q 009424 376 EEWLSVKSSYDPRIANLMMSWYVKEG-NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGA 454 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 454 (535)
..+.+........+|...+..-.+.+ +.+.|.++|+...+.- .-+...|...+......|+.+.|..+|+++. .
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal----~ 532 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSI----D 532 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT----T
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHH----H
Confidence 99987611223344444444444444 5899999999998752 2266777888888888999999999999999 3
Q ss_pred CCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 455 KSWRP--KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 455 ~g~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
..-.+ ....|...+..-...|+.+.+.++.+++.+..+.++ ....+++-|
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 32211 235788888888899999999999999998887643 444446666
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=7.2e-12 Score=120.51 Aligned_cols=250 Identities=8% Similarity=-0.000 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE-YDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
..+|+.+...+.+.|++++|+..|++..+.. +-+...|+.+...+...|+ +++|+..|++..+... -+...|..+-.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4566666667777777777777777766653 2345566666666666665 7777777766666542 25556666666
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh-cCCH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS-VGKK 333 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~ 333 (535)
++...|++++|+..|+++.+.. +.+...|..+..++.+.|++++|+..|+++.+..+ .+...|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 6666666666666666665432 34555666666666666666666666665554321 133344444444444 2222
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG--NFDKAEAFFN 411 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~ 411 (535)
++|+ .+.+...+++.++..+. +...|+.+...+.+.| ++++|.+.+.
T Consensus 252 ~eA~------------------------------~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 252 DRAV------------------------------LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp SHHH------------------------------HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred hHHH------------------------------HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 3321 11114566666655544 5667777777777766 5777777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHccc---------cHHHHHHHHHHh-HHhccCCCCCCCHH-HHHHHHH
Q 009424 412 SIIEEGGKPNSTSWETLAEGHIRER---------RILEALSCLKGA-FAAEGAKSWRPKPV-NVINFFK 469 (535)
Q Consensus 412 ~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~~g~~p~~~-~~~~ll~ 469 (535)
++ +.. ..+...+..+...|.+.| ..++|+++|+++ . .+.|... .|..+..
T Consensus 301 ~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~------~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 301 DL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK------EKDTIRKEYWRYIGR 361 (382)
T ss_dssp HH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH------TTCGGGHHHHHHHHH
T ss_pred Hh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------HhCchhHHHHHHHHH
Confidence 76 322 225667777777777764 258889999888 6 3556544 3444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-12 Score=124.81 Aligned_cols=346 Identities=16% Similarity=0.137 Sum_probs=227.7
Q ss_pred HHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH---hhHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 009424 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV---ASAEDFFLSLPDTLKDRRVYGALLNAYVR 188 (535)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 188 (535)
+...+.+.|++++|.++|....+.| . ......+..+|...|+. ++|...|.+..+. +...+..|-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--Y---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--C---CTGGGTCC------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 4556677899999999999998877 2 22333455556667777 8999999998873 66677777775555
Q ss_pred cC-----CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 009424 189 AR-----MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD---EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260 (535)
Q Consensus 189 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g 260 (535)
.+ ++++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 7889999999999887 4558888888888766544 4555555555555 3455666667777777
Q ss_pred CHh----HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc---
Q 009424 261 STE----KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG---QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV--- 330 (535)
Q Consensus 261 ~~~----~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 330 (535)
.++ .+..++..... + .|+ .+..|..+|.+.| +.++|.+.|++..+.|. ++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~--~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN--T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT--T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CcccCHHHHHHHHHHHHc--C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 444 44445555442 1 333 8888888999999 99999999999887664 3444445666666554
Q ss_pred -CCHHHHHHHHHHHHhhCCCCchhhHHHHHHH-H--HhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----
Q 009424 331 -GKKEEVYRVWNLYRSVFPGVTNLGYHAMISS-L--ARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG----- 401 (535)
Q Consensus 331 -g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 401 (535)
++.++|+..|++.. . . +...+..+... + ...++.++|.+.|++..+.| ++..+..|..+|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~-g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P-G--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G-G--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C-C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 68999999999987 2 1 22345555555 3 46889999999999998877 7778888888887 55
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh----
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE---- 473 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~---- 473 (535)
++++|.+.|++.. . -+...+..|...|.. ..+.++|+++|++.. +.|. |+ ....+-..|..
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa----~~g~-~~--A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA----RNGQ-NS--ADFAIAQLFSQGKGT 370 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH----TTTC-TT--HHHHHHHHHHSCTTB
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH----hhCh-HH--HHHHHHHHHHhCCCC
Confidence 8999999998877 2 367777777777766 348999999999999 6663 32 33334444432
Q ss_pred cCChhhHHHHHHHHhcCCCCCh
Q 009424 474 ESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
..+.++|...++...+.|....
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHH
Confidence 3588999999999988886543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-11 Score=112.64 Aligned_cols=188 Identities=12% Similarity=-0.025 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 299 EKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
++|..+|++..+. +.| +...|..+...+.+.|++++|..+|++.....+.-....|..+...+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4555555544431 112 22244445555555555555555555554422211111444555555555555555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC-
Q 009424 378 WLSVKSSYDPRIANLMMSWYV-KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK- 455 (535)
Q Consensus 378 ~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~- 455 (535)
.++..+. +...|........ ..|+.++|.++|++..+..+. +...|..++..+.+.|+.++|..+|+++. ..
T Consensus 160 a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al----~~~ 233 (308)
T 2ond_A 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVL----TSG 233 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHH----HSS
T ss_pred HHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcc
Confidence 5443321 2333332222211 145555666666555543222 45555555555555566666666666655 22
Q ss_pred CCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 456 SWRP--KPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 456 g~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.+.| ....|..++......|+.+.|..+++++.+..+.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 1233 2334555555555556666666666665555444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=126.16 Aligned_cols=304 Identities=12% Similarity=0.021 Sum_probs=227.5
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhC---CCCC-C
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD----VYSYNIWLSSCGSQGSTEKMEGVFELMKVD---KAVN-P 280 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~-~ 280 (535)
+....+......+...|++++|+..|++..+.+. .+ ..++..+...+...|++++|...+++.... .+-. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455667778889999999999999999998742 23 356788888999999999999999886531 1111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCC--------------------HHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGK--------------------KEE 335 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~ 335 (535)
...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2457888889999999999999999987653211 12 3378888889999999 999
Q ss_pred HHHHHHHHHhh----CCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhH
Q 009424 336 VYRVWNLYRSV----FPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 336 a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~ 405 (535)
|+..+++.... +..+. ..++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999886542 11111 146788889999999999999999988754211 12 3478889999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhh
Q 009424 406 AEAFFNSIIEEGGK-PN----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGS 479 (535)
Q Consensus 406 A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~ 479 (535)
|...+++..+.... ++ ..++..+...|...|++++|.+.++++.+..+..+-.+. ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988752111 12 567888899999999999999999999843322222221 4467777888999999999
Q ss_pred HHHHHHHHhcC----CCCChh--hHHHHHHHhHhhhhccc
Q 009424 480 KEAFVALLRQP----GYRKEK--DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 480 a~~~~~~~~~~----~~~~~~--~~~~L~~~y~~~~~~~~ 513 (535)
|.+.+++..+. +..+.. .+..|...|...|....
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999987654 322222 67888899988887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-12 Score=122.11 Aligned_cols=269 Identities=9% Similarity=0.027 Sum_probs=141.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVH-----SLPYNVMMTLYMKIKEYDEVESMVSEMKEK----GIR-LDVYS 248 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-pd~~~ 248 (535)
+......+.+.|++++|...|++..+.. |+ ...|..+...+...|++++|.+.+++..+. +-. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444455666777777777777766642 22 245666666777777777777777665432 111 12345
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQ--------------------VEKAEES 304 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 304 (535)
+..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 556666666777777777766665431100112 2356666666667777 6666666
Q ss_pred HHHHHhcc----cCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---Cc--hhhHHHHHHHHHhcCCHhhHHHH
Q 009424 305 LRRVESRI----TGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG---VT--NLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 305 ~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~--~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
+++..+.. ..+ ...++..+...|...|++++|+..+++....... +. ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66543210 000 1224555555666666666666666655432111 00 12455555556666666666666
Q ss_pred HHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccccHHHHHHH
Q 009424 375 FEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-KPN----STSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 375 ~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
+++..+.... .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|.+.|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6555432111 01 33445555555666666666666555443100 001 23444555555556666666666
Q ss_pred HHHhH
Q 009424 445 LKGAF 449 (535)
Q Consensus 445 ~~~m~ 449 (535)
++++.
T Consensus 326 ~~~a~ 330 (338)
T 3ro2_A 326 AEKHL 330 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=126.94 Aligned_cols=282 Identities=10% Similarity=0.007 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC-c----chHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH-S----LPYNVMMTLYMKIKEYDEVESMVSEMKEK----G-IRLDV 246 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~pd~ 246 (535)
..+..+...+.+.|++++|...|++..+.+ |+ . ..|..+...|...|++++|++.|++..+. + .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455566777788888888888777653 22 2 35677777777778888888777776543 1 11123
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhCC---C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVDK---A-VNPNWTTFSTMATMYIKMGQ-----------------VEKAEESL 305 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 305 (535)
.++..+...|...|++++|...+++..+.. + .+....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 445556666666666666666666654310 0 01112345555555555555 55555544
Q ss_pred HHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 306 RRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
++..+.. . ..+..+. ...+..+...+...|++++|...+++..+....
T Consensus 207 ~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 207 QENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 4432210 0 0000010 124445555555555555555555554432111
Q ss_pred -CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C----CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccC
Q 009424 385 -YD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-P----NSTSWETLAEGHIRERRILEALSCLKGAFAAEGA 454 (535)
Q Consensus 385 -~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 454 (535)
.+ ..++..+...|...|++++|...|++..+.... . ...++..+...|...|++++|.+.++++.+..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01 125555666666666777666666665542110 0 1345666666677777777777777776632211
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 455 KSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 455 ~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.+..+ ...++..+...+...|++++|.+.+++..+..
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11111 12355556666777777777777777766554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-12 Score=125.14 Aligned_cols=277 Identities=11% Similarity=0.027 Sum_probs=173.3
Q ss_pred HhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCC-CH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHC----C-CCcCcc
Q 009424 143 ASDAAIQLDLIAKVHGVASAEDFFLSLPDTLK-DR----RVYGALLNAYVRARMRGNAELLIDKMRDK----G-YAVHSL 212 (535)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~ 212 (535)
...+..+...+...|++++|...|++..+..| +. .+|..+...|...|++++|...|++..+. + .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455667788999999999999998766533 33 47889999999999999999999987653 1 122356
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcCCC-----------------HhHHHHHHH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKG-----IRLDVYSYNIWLSSCGSQGS-----------------TEKMEGVFE 270 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~pd~~~~~~ll~~~~~~g~-----------------~~~a~~~~~ 270 (535)
+|..+...|...|++++|.+.|++..+.. ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78889999999999999999999887641 11234577888888999999 888888887
Q ss_pred HhHhCC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCCHHHHHHHHH
Q 009424 271 LMKVDK---AVNP-NWTTFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 271 ~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
+..+.. +-.+ ...++..+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|+..|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 765311 1001 1235556666666777777777776665432111 01 1134444444455555555555554
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-P 420 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p 420 (535)
+.......... ......++..+...|...|++++|...|++..+.... +
T Consensus 288 ~al~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 288 RTLALAVELGE------------------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHTTC------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 44331110000 0001344555666666666666666666655432000 0
Q ss_pred ----CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 421 ----NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 421 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...++..+...|...|++++|.+.++++.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13356666677777777777777777776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-12 Score=126.48 Aligned_cols=378 Identities=13% Similarity=0.051 Sum_probs=244.8
Q ss_pred HHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh---HHHHHHHHHHHhcCCCcccCHhHHHHHHHH
Q 009424 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY---KHALEVYDWMNNRGERFRLSASDAAIQLDL 152 (535)
Q Consensus 76 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~~li~~ 152 (535)
+...+.+.|+++ +|+.+|++..+.|. ++ .+..+-..+...|+. ++|.++|....+. ++.....+...
T Consensus 9 la~~~~~~g~~~-~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTV-TAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHTC-CT--GGGTCC----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHH-HHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 455667788999 99999999887763 22 223344444556666 8999999888743 34445555554
Q ss_pred HHhhC-----CHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 153 IAKVH-----GVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRG---NAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 153 ~~~~g-----~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
+...+ +.++|...|++..+. -+...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 44444 788999999887653 23347777778887766544 4555566655565 567888888899888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc----CC
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG---STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM----GQ 297 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 297 (535)
+.++++......+.+.-...+...+..|...|...| +.++|.+.|+...+.. +++...+..|..+|... ++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCC
Confidence 866665555444433322334447888888888899 9999999999998643 66777667788888665 79
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC-----CHh
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSL-Y--GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG-----DIE 369 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-----~~~ 369 (535)
.++|...|++.. . -+...+..+-.. | ...++.++|+..|++..+.+ +...+..+...|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999986 2 345566666665 4 46889999999999988765 3455666666666 55 999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEA 441 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 441 (535)
+|...|++.. .| ++..+..|..+|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999876 33 77788888888876 348999999999998865 34555666666653 4689999
Q ss_pred HHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 442 LSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
..+|+... +.|. ++.......+..-...++.++|.++.++..+
T Consensus 378 ~~~~~~A~----~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 378 YVFSQLAK----AQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHH----TTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999 6663 2222222223222233455666666665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-11 Score=111.10 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCCCH-------hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCG-------SQGST-------EKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 293 (535)
++|..+|++..+.. +-+...|..+...+. +.|++ ++|..+|++..+.. -+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 44555555555432 224444444444443 24554 67777777776411 1334556777777777
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCc-c-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH-hcCCHhh
Q 009424 294 KMGQVEKAEESLRRVESRITGRDR-V-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA-RIGDIEG 370 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~-~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~ 370 (535)
+.|++++|..+|++..+ ..|+. . .|..+...+.+.|++++|+.+|++..+..+.. ...|........ ..|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-HHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-THHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777765 23432 2 67777777777777777777777776643322 223332222221 2578888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHccccHHHHHHHHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG-GKP--NSTSWETLAEGHIRERRILEALSCLKG 447 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (535)
|..+|+..++..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877765443 67777778888888888888888888887752 333 356777777777778888888888888
Q ss_pred hHH
Q 009424 448 AFA 450 (535)
Q Consensus 448 m~~ 450 (535)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 773
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-12 Score=119.35 Aligned_cols=279 Identities=11% Similarity=0.016 Sum_probs=209.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhC---CC-CCCCHH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD----VYSYNIWLSSCGSQGSTEKMEGVFELMKVD---KA-VNPNWT 283 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~-~~~~~~ 283 (535)
..+......+...|++++|+..|++..+... .+ ...+..+...+...|++++|...+++..+. .+ .+....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566788899999999999999998742 23 367788888999999999999999886532 11 112255
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCC--------------------HHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGK--------------------KEEVYR 338 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~~ 338 (535)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7888899999999999999999997653221 22 3377788889999999 999999
Q ss_pred HHHHHHhh----CCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhHHHH
Q 009424 339 VWNLYRSV----FPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 339 ~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~ 408 (535)
.+++.... +..+. ...+..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99886542 11111 246778888999999999999999988754211 12 3377888999999999999999
Q ss_pred HHHHHHHcCCC-CC----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHH
Q 009424 409 FFNSIIEEGGK-PN----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEA 482 (535)
Q Consensus 409 ~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~ 482 (535)
.+++..+.... ++ ..++..+...|...|++++|.+.++++.+..+..+-.+. ..++..+...+...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99987752111 12 557788889999999999999999998843222221111 3467778889999999999999
Q ss_pred HHHHHhcCC
Q 009424 483 FVALLRQPG 491 (535)
Q Consensus 483 ~~~~~~~~~ 491 (535)
.+++..+..
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-11 Score=103.08 Aligned_cols=165 Identities=12% Similarity=0.065 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+..+|..+...|.+.|++++|...|++..+..+ -+...|..+...|.+.|++++|+..+.......+.. ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 455677777777777777777777777665422 244566667777777777777777777776654442 345556666
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
.+...++++.+...+....+..+. +...+..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 677777777777777777665543 5667777777777777777777777777765443 56677777777777777777
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
|++.|+++.
T Consensus 160 A~~~~~~al 168 (184)
T 3vtx_A 160 AVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777777
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=122.34 Aligned_cols=246 Identities=12% Similarity=0.049 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-------CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDK-------GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------G 241 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 241 (535)
+..+|..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|.+.|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888888888888888888888887762 22334556777778888888888888888777654 1
Q ss_pred C-CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 009424 242 I-RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK-----AV-NPNWTTFSTMATMYIKMGQVEKAEESLRRVESR--- 311 (535)
Q Consensus 242 ~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 311 (535)
- +....++..+...+...|++++|...+++..+.. +- +....++..+...|...|++++|..+|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1234456666666777777777777776665421 11 112334555566666666666666666665442
Q ss_pred ---ccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------CchhhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 312 ---ITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG-------VTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 312 ---g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
+..| ...++..+...|...|++++|+..|+++....+. +.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 0011 1224444555555555555555555555432100 00000000
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 381 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
....+..+...+...+.+.+|...++....... .+..+|..+...|.+.|++++|.++|+++.
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111222233333444555555556655554211 145566777777777777777777777766
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-11 Score=120.71 Aligned_cols=215 Identities=8% Similarity=0.006 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH-hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGST-EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL 305 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (535)
+++++..+++..... +.+...+..+..++...|++ ++|.+.|++..+.. +.+...|..+...|.+.|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555544432 23566677777777777777 77777777776532 345667777777777777777777777
Q ss_pred HHHHhcccCCCcchHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc--------CCH
Q 009424 306 RRVESRITGRDRVPYHYLLSLYGSV---------GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI--------GDI 368 (535)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------g~~ 368 (535)
++..+. .|+...|..+...|... |++++|+..|++.....+. +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 777663 35556677777777777 7888888888887776444 345677777777777 888
Q ss_pred hhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHH
Q 009424 369 EGMEKIFEEWLSVKSS--YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (535)
++|...|++..+..+. -+...|..+..+|...|++++|...|++..+.... +...|..+...+...|++++|++.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888776441 27788888888888899999999999888876544 66778888888888888888887654
Q ss_pred Hh
Q 009424 447 GA 448 (535)
Q Consensus 447 ~m 448 (535)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-11 Score=115.85 Aligned_cols=232 Identities=13% Similarity=0.022 Sum_probs=162.7
Q ss_pred HHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC------cchHH
Q 009424 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD------RVPYH 321 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~ 321 (535)
....+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++..+.-...+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444567788888888888887642111122 34677788888888888888888888755322111 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-----hhhHHHHHHHHHhcCCHhhHHHHHHHHHhc----CC-CCCHHHHH
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRSVFPGVT-----NLGYHAMISSLARIGDIEGMEKIFEEWLSV----KS-SYDPRIAN 391 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 391 (535)
.+...|...|++++|+..|++........+ ..++..+...|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888999999888888765322111 146778888889999999999998888762 22 22456788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC----CCCCHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCC-HHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEG----GKPNSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPK-PVN 463 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~-~~~ 463 (535)
.+...|.+.|++++|...+++..+.. -......+..+...|...|+ .++|+.++++.. ..|+ ...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-------~~~~~~~~ 341 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-------LYADLEDF 341 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-------CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-------CHHHHHHH
Confidence 88899999999999999998876521 11112335667777888888 777777777654 2332 346
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
+..+...+...|++++|.+.+++..+.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667778889999999999999887643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-09 Score=110.98 Aligned_cols=410 Identities=10% Similarity=0.011 Sum_probs=276.8
Q ss_pred ceeecccccccccccccc----------c-cccchHHHHHHHhccCC---CCccHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 009424 50 IKCSMSQIHSYGTVDFER----------R-PMIKWNAIFRKLSLMDN---PQLGSASVLNDWEKGG-RSLTKWELCRVVK 114 (535)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~----------~-~~~~~n~li~~~~~~g~---~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~ 114 (535)
...++....+.+.+..+| | ..-.|..-+..-.+.++ .. .+..+|++.+... ..|+...|..-++
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~-~v~~lfeRal~~~~~~~sv~LW~~Yl~ 147 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA-VIEPVLARCLSKELGNNDLSLWLSYIT 147 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHH-HHHHHHHHHTCSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 344555444445554333 3 34568888888888888 88 9999999998753 2488888888888
Q ss_pred HHHHccCh--------HHHHHHHHHHHhc-CCCc-c-cCHhHHHHHHHHHH---------hhCCHhhHHHHHhhCCCCCC
Q 009424 115 ELRKFRRY--------KHALEVYDWMNNR-GERF-R-LSASDAAIQLDLIA---------KVHGVASAEDFFLSLPDTLK 174 (535)
Q Consensus 115 ~~~~~~~~--------~~a~~~~~~~~~~-g~~~-~-~~~~~~~~li~~~~---------~~g~~~~A~~~f~~~~~~~~ 174 (535)
-..+.++. +...++|+..+.. | . . .+...+...+.... ..++++.++++|++....+.
T Consensus 148 f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG--~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~ 225 (679)
T 4e6h_A 148 YVRKKNDIITGGEEARNIVIQAFQVVVDKCA--IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPM 225 (679)
T ss_dssp HHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHhC--cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCcc
Confidence 77777664 3345788877653 4 2 2 34456666666543 34568889999999886422
Q ss_pred C--HHHHHHHHHHHHHcC-------------CHhHHHHHHHHHHH--CCCC---cC--------------------cchH
Q 009424 175 D--RRVYGALLNAYVRAR-------------MRGNAELLIDKMRD--KGYA---VH--------------------SLPY 214 (535)
Q Consensus 175 ~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~---p~--------------------~~~~ 214 (535)
. ..+|......--..+ +++.|...+.++.. .++. |. ...|
T Consensus 226 ~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW 305 (679)
T 4e6h_A 226 DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIW 305 (679)
T ss_dssp SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHH
Confidence 2 245544433222212 12334555554432 1211 11 1235
Q ss_pred HHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHH-HHHHHhHhCCCCCCCHHHHH
Q 009424 215 NVMMTLYMKIK-------EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKME-GVFELMKVDKAVNPNWTTFS 286 (535)
Q Consensus 215 ~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~ 286 (535)
...+..--..+ ..+.+..+|++.+.. ++-+...|-.....+...|+.+.|. ++|+..... ++.+...|-
T Consensus 306 ~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl 382 (679)
T 4e6h_A 306 LEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 55554433322 123456778888876 3447788888888888889999996 999999863 466777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccc---------CCC------------cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRIT---------GRD------------RVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
..+...-+.|+++.|..+|+.+.+... .|+ ...|...+....+.|..+.|..+|.+...
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999876421 132 23688888888889999999999999987
Q ss_pred hCCCCchhhHHHHHHHHHhc-CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CH
Q 009424 346 VFPGVTNLGYHAMISSLARI-GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP--NS 422 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~ 422 (535)
..+......|...+..-.+. ++.+.|.++|+..++.- .-+...|...++.....|+.+.|..+|++.......+ ..
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 51222223343333333344 45899999999998873 3377788899999999999999999999998754322 35
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACE 472 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~ 472 (535)
..|...+..-.+.|+.+.+.++.+++.+ ..|+......+..-|.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~------~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFE------KFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHH------HSTTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCcHHHHHHHHhc
Confidence 6788888888899999999999999993 4566555555555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=120.15 Aligned_cols=248 Identities=14% Similarity=0.077 Sum_probs=168.4
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC---------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT---------LKDRRVYGALLNAYVRARMRGNAELLIDKMRDK---- 205 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 205 (535)
.+.....+..+...|...|++++|..+|+++.+. .....++..+...|...|++++|...|++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999999999987651 223567889999999999999999999998764
Q ss_pred --C-CCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 206 --G-YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------GIRL-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 206 --g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
+ .+....+|..+...|...|++++|.+.|++..+. +-.| ...++..+...+...|++++|..+++...+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 1234567888999999999999999999998875 2222 4556788889999999999999999998753
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-------CCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 276 ------KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRIT-------GRDRVPYHYLLSLYGSVGKKEEVYRVWNL 342 (535)
Q Consensus 276 ------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (535)
...+....++..+...|.+.|++++|...|+++.+... .+.........
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~------------------ 244 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA------------------ 244 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH------------------
Confidence 11122345788899999999999999999999876311 11111111111
Q ss_pred HHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 343 YRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 343 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
..+..+...+...+.+.++...+........ .+..++..+..+|.+.|++++|.+.|++..+
T Consensus 245 ----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 ----------EEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------HHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122223333344555555555555443221 2456677777888888888888888877665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-11 Score=116.37 Aligned_cols=164 Identities=12% Similarity=0.035 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-C----cchHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCc-hh
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGR-D----RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV----FPGVT-NL 353 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~ 353 (535)
+++.+...|...|++++|...|++..+..... + ..++..+...|...|++++|+..|++.... +..|. ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 34444445555555555555554443221110 0 124444555555555555555555554431 11111 24
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCC-CHhHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKS----SYDPRIANLMMSWYVKEGN---FDKAEAFFNSIIEEGGKP-NSTSW 425 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~ 425 (535)
++..+...+...|++++|...+++..+... ......+..+...|...|+ +++|..++++.. ..| ....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHH
Confidence 455555555556666666555555443210 1011223445555556666 555555555441 111 23345
Q ss_pred HHHHHHHHccccHHHHHHHHHHhHH
Q 009424 426 ETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 426 ~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
..+...|...|++++|.+.|+++.+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566667777777777777776653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=100.18 Aligned_cols=169 Identities=8% Similarity=-0.023 Sum_probs=148.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009424 316 DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMS 395 (535)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 395 (535)
+...|..+-..|.+.|++++|+..|++..+..|. +...+..+...+.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5667889999999999999999999999987655 4467889999999999999999999999877655 6788888899
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhc
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEE 474 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~ 474 (535)
.+...++++.|...+++..+.... +...+..+...|.+.|++++|++.|+++.+ +.| +...|..+..++...
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTIS------IKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHH------hcchhhhHHHHHHHHHHHC
Confidence 999999999999999999886554 788899999999999999999999999993 345 466888888999999
Q ss_pred CChhhHHHHHHHHhcCCCC
Q 009424 475 SDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~ 493 (535)
|++++|.+.+++.++..+.
T Consensus 155 g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHhCCcc
Confidence 9999999999999987653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-11 Score=119.21 Aligned_cols=186 Identities=10% Similarity=-0.059 Sum_probs=110.2
Q ss_pred chHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 318 VPYHYLLSLYGSVGKK-EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 318 ~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
..|..+...|...|++ ++|++.|++..+..+. +...|..+...|...|++++|.+.|++..+.. |+...+..+...
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~ 179 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence 3444444444555555 5555555554443322 22345555555555555666665555555443 334555555555
Q ss_pred HHHc---------CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--------ccHHHHHHHHHHhHHhccCCCCCC
Q 009424 397 YVKE---------GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE--------RRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 397 ~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
|... |++++|...|++..+.... +...|..+...|... |++++|++.|+++.+ +.|
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p 252 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK------VDR 252 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH------HCG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH------hCC
Confidence 5555 6666666666666665433 566666666666666 777777777777762 234
Q ss_pred ----CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 460 ----KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 460 ----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+...|..+..++...|++++|.+.+++..+..+.....+..+..+|...|+..+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777777666665566666666666666555
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-10 Score=108.02 Aligned_cols=302 Identities=11% Similarity=-0.013 Sum_probs=189.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHS-----LPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLDV----YS 248 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~----~~ 248 (535)
+......+...|++++|...+++..... +++. .+++.+...+...|++++|.+.+++..+... .++. .+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444456677899999999999887753 2221 1456667778888999999999888765321 1122 23
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC----Ccc
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDK---AVN--P-NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR----DRV 318 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~ 318 (535)
+..+...+...|++++|...+++..+.. +.. | ...++..+...|...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4566677888899999988888876421 111 2 23456667778888899999988888876543221 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHH-----HHHHHHHhcCCHhhHHHHHHHHHhcCCCCC---HHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYH-----AMISSLARIGDIEGMEKIFEEWLSVKSSYD---PRI 389 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 389 (535)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5666777788888888888888887654222211 1111 223346678888888888887765432211 224
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCH-hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEE----GGKPNS-TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~ 464 (535)
+..+...+...|++++|...+++.... |..++. ..+..+...+...|+.++|.+.+++..+.....|
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-------- 327 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-------- 327 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc--------
Confidence 556677778888888888888776542 111122 2555666777788888888888888873221111
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.+..+...| +....+++.+.+..+.
T Consensus 328 --~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 --FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp --CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred --HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 112233333 4556666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-09 Score=103.81 Aligned_cols=296 Identities=9% Similarity=-0.005 Sum_probs=199.1
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhhCCCCC--CCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CcCc----chH
Q 009424 146 AAIQLDLIAKVHGVASAEDFFLSLPDTL--KDR----RVYGALLNAYVRARMRGNAELLIDKMRDKGY-AVHS----LPY 214 (535)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~ 214 (535)
.......+...|++++|...+++..... .+. .+++.+...|...|++++|...+++.....- .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778899999999987754331 222 2566777788889999999999988765210 0121 235
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC---CCCCCHHH
Q 009424 215 NVMMTLYMKIKEYDEVESMVSEMKEK----GIR--L-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK---AVNPNWTT 284 (535)
Q Consensus 215 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 284 (535)
+.+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..... +......+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999888653 221 2 23456667778889999999999999877532 11112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-chHHH-----HHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhhH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDR-VPYHY-----LLSLYGSVGKKEEVYRVWNLYRSVFPGVT---NLGY 355 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~ 355 (535)
+..+...+...|++++|...+++.......++. ..|.. .+..+...|++++|...+++.....+..+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888899999999999999988654333322 22322 23447789999999999988876443321 1245
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcC----CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVK----SSYDP-RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 430 (535)
..+...+...|++++|...++...... ..++. .++..+..++...|+.++|...+++...... . .-.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 677788889999999999998876532 11122 3566677888899999999999988765210 0 11223
Q ss_pred HHHccccHHHHHHHHHHhH
Q 009424 431 GHIRERRILEALSCLKGAF 449 (535)
Q Consensus 431 ~~~~~g~~~~A~~~~~~m~ 449 (535)
.+...| +....+++...
T Consensus 331 ~~~~~g--~~~~~ll~~~~ 347 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLI 347 (373)
T ss_dssp HHHTTH--HHHHHHHHHHH
T ss_pred HHHHcc--HHHHHHHHHHH
Confidence 344444 55666666666
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.1e-10 Score=106.58 Aligned_cols=228 Identities=11% Similarity=0.013 Sum_probs=157.5
Q ss_pred HHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-C-----CcchHHHH
Q 009424 254 SSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-R-----DRVPYHYL 323 (535)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~~~~~~~l 323 (535)
..+...|++++|...|++..+...-.++ ..++..+...|...|+++.|...+++..+.... + ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456778888888888877642211223 346777778888888888888888876543211 1 13356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCC---CC--chhhHHHHHHHHHhcCCHhhHHHHHHHHHh-----cCCCCCHHHHHHH
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFP---GV--TNLGYHAMISSLARIGDIEGMEKIFEEWLS-----VKSSYDPRIANLM 393 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 393 (535)
...|...|++++|++.|++...... .+ ...++..+...+...|++++|...+++..+ ..+. ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 7888888888888888887755211 11 114677788888889999999998888876 3333 36677888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCC---C-CHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCC-HHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGK---P-NSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPK-PVNVI 465 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~-~~~~~ 465 (535)
...|.+.|++++|...+++..+.... | ....+..+...|...++ .++|+..+++.. ..|+ ...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-------~~~~~~~~~~ 340 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-------LHAYIEACAR 340 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-------CHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-------ChhHHHHHHH
Confidence 88999999999999999988763211 1 23345556666667777 777777777643 2232 34556
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhc
Q 009424 466 NFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
.+...+...|++++|.+.+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788899999999999888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-09 Score=93.91 Aligned_cols=163 Identities=15% Similarity=0.090 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH
Q 009424 144 SDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222 (535)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 222 (535)
..+..+...+...|++++|...|+++... +.+..+|..+...+.+.|++++|...|++..+.. +.+...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445566667777777777777776655 3456677777777777777777777777776653 334566666667777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (535)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|...++...+.. +.+..++..+...|.+.|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777766653 3355566666666666777777777776666432 345566666666666666666666
Q ss_pred HHHHHHHh
Q 009424 303 ESLRRVES 310 (535)
Q Consensus 303 ~~~~~m~~ 310 (535)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-10 Score=111.32 Aligned_cols=228 Identities=11% Similarity=0.006 Sum_probs=141.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC-----CHHHHHH
Q 009424 218 MTLYMKIKEYDEVESMVSEMKEKGI-RLD----VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP-----NWTTFST 287 (535)
Q Consensus 218 i~~~~~~g~~~~a~~~~~~m~~~g~-~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 287 (535)
...+...|++++|+..|++..+.-. .+| ..++..+...|...|+++.|...+.+..+...-.+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445567777777777777665311 122 34556666677777777777777766553111011 1345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchhhHHH
Q 009424 288 MATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGKKEEVYRVWNLYRS-----VFPGVTNLGYHA 357 (535)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 357 (535)
+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|+..|++... ..+.. ..++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHH
Confidence 777777788888887777776542111 11 23566677777778888888888877665 22222 456777
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCC---C-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCC-HhHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSS---Y-DPRIANLMMSWYVKEGN---FDKAEAFFNSIIEEGGKPN-STSWETLA 429 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li 429 (535)
+...+.+.|++++|...+++..+.... + ....+..+...|...|+ +++|...+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 777888888888888888877654321 1 12344555556666677 66666666652 22222 34556677
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|...|++++|.+.|+++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 88888888888888888876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-09 Score=97.65 Aligned_cols=209 Identities=8% Similarity=-0.024 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHH
Q 009424 280 PNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359 (535)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 359 (535)
.|...+......|.+.|++++|...|++..+....++...+..+..++...|++++|+..|++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567777777788888888888888888776554356666666777788888888888888887775443 335677777
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HhHHHHHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDP-------RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN---STSWETLA 429 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li 429 (535)
..+...|++++|...+++..+..+. +. ..|..+...+.+.|++++|...|++.. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT--DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH--hcCCCcccHHHHHHHH
Confidence 7778888888888888877765543 34 446666677777777777777777653 45554 34555555
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
..|...|+ .+++++. ..+ ..+...|.... ....+.+++|...+++..+..+........|...
T Consensus 161 ~~~~~~~~-----~~~~~a~----~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKAT----PLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHG----GGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHH----hcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 55544432 3344444 111 12233333332 2334557888888888888877766555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-09 Score=92.36 Aligned_cols=161 Identities=14% Similarity=0.004 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++....+. +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 33344444444444444444444432211 12333444444444444444444444444443221 22334444455555
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
.|++++|.+.++.+.+.... +...+..+...|.+.|++++|...+++..+.... +...|..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555443322 4445555555555556666666666555554322 445555555556666666666666
Q ss_pred HHHhH
Q 009424 445 LKGAF 449 (535)
Q Consensus 445 ~~~m~ 449 (535)
++++.
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-09 Score=93.64 Aligned_cols=206 Identities=10% Similarity=0.042 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHH
Q 009424 244 LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN-PNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHY 322 (535)
Q Consensus 244 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 322 (535)
.|...+......+...|++++|...|+...+.. + ++...+..+...|.+.|++++|...|++..+..+ .+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 466788888899999999999999999998642 3 7888888899999999999999999999987432 24568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch------hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC---HHHHHHH
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTN------LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD---PRIANLM 393 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 393 (535)
+...|...|++++|+..|++.....+.... ..|..+...+...|++++|.+.++++++. .|+ ...+..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999987655321 35778888899999999999999999775 344 4667777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
...|...| ..+++++...+.. +...|.... ....+.+++|+..|++.. .+.|+......++
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~------~l~p~~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAV------TLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHH------HHCTTCHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHh------hcCCCCHHHHHHH
Confidence 77776554 3445555554322 444454433 345677999999999999 3567655444333
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.9e-10 Score=114.15 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 359 (535)
+...++.|...|.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++..+..+. +...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3456666666777777777777777666553 23 3445666666666666666666666666654333 224555666
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 439 (535)
.++.+.|++++|.+.|++.++..+. +...|+.+..+|.+.|++++|++.|++..+.... +...|..+...|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 6666666666666666666555433 4556666666666666666666666666554333 4555666666666666666
Q ss_pred HHHHHHHHhH
Q 009424 440 EALSCLKGAF 449 (535)
Q Consensus 440 ~A~~~~~~m~ 449 (535)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=113.11 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHYL 323 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l 323 (535)
+...|+.|-..+.+.|++++|++.|++..+.. +-+..+|+.+...|.+.|++++|...|++..+. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 46789999999999999999999999998642 456889999999999999999999999999874 44 46689999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
..+|.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|.+.|++.++..+. +...+..+..+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999986554 3468899999999999999999999999987755 788999999999999999
Q ss_pred hHHHHHHHHHHH
Q 009424 404 DKAEAFFNSIIE 415 (535)
Q Consensus 404 ~~A~~~~~~m~~ 415 (535)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=100.78 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=84.5
Q ss_pred cCCHhHHHHHHHHHHH-------CCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHHHHHHHH
Q 009424 189 ARMRGNAELLIDKMRD-------KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------GI-RLDVYSYNIWLS 254 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~pd~~~~~~ll~ 254 (535)
.|++++|...|++..+ .+.+....+|..+...|...|++++|+..|++..+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555433 121223456666777777777777777777766543 11 123345666666
Q ss_pred HHhcCCCHhHHHHHHHHhHhCC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------ccCC-CcchHH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDK-----A-VNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR------ITGR-DRVPYH 321 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~ 321 (535)
.+...|++++|...+.+..+.. . -+....++..+...|...|++++|...|++..+. ...| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666677777766666665320 0 0122345555666666666666666666665442 0011 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
.+...|...|++++|+..|++...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=100.65 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=156.2
Q ss_pred hcCCCHhHHHHHHHHhHhC------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc------cCC-CcchHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVD------KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI------TGR-DRVPYHYL 323 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~-~~~~~~~l 323 (535)
...|+++.|...+++..+. ...+....++..+...|...|++++|...|++..+.. -.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776541 1112345678889999999999999999999987541 112 34578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh-----CC-CCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhc------CCCC-CHHH
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSV-----FP-GVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSV------KSSY-DPRI 389 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~ 389 (535)
...|...|++++|+..|++.... +. .|+ ...+..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 12 232 367888889999999999999999998765 1122 3567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCC-HhHHHHHHHHHHcccc------HHHHHHHHHHhHHhccCC
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEE-------GGKPN-STSWETLAEGHIRERR------ILEALSCLKGAFAAEGAK 455 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~ 455 (535)
+..+...|.+.|++++|..+|++..+. ...+. ...|..+...+...+. +.++...++...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 245 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK------ 245 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC------
Confidence 888999999999999999999999884 11222 2333333333333222 222332332222
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 456 SWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 456 g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
...| ...++..+...+...|++++|.+++++.++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 2346777888999999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-09 Score=96.30 Aligned_cols=209 Identities=10% Similarity=0.023 Sum_probs=146.6
Q ss_pred CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----cCCC-cchHHHHHHHHHhcCCHHH
Q 009424 261 STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI----TGRD-RVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~-~~~~~~li~~~~~~g~~~~ 335 (535)
++++|...|... ...|...|++++|...|++..+.. -.++ ..+|+.+...|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 477777777766 335777899999998888775431 1111 4578888888999999999
Q ss_pred HHHHHHHHHhhCCCC---c--hhhHHHHHHHHHhc-CCHhhHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHHcCChh
Q 009424 336 VYRVWNLYRSVFPGV---T--NLGYHAMISSLARI-GDIEGMEKIFEEWLSVKSSY-D----PRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 336 a~~~~~~m~~~~~~~---~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~ 404 (535)
|+..|++.....+.. . ..++..+...|... |++++|...+++..+..... + ..++..+...|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 999998876632221 1 24677888888885 99999999999887643221 1 356788899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHh------HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH------HHHHHHHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNST------SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV------NVINFFKACE 472 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~------~~~~ll~a~~ 472 (535)
+|...|++..+........ .|..+...+...|++++|+..|++.. .+.|+.. .+..++.++.
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ------SEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG------CC---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999998854432221 56777888889999999999999998 3455432 3444555554
Q ss_pred --hcCChhhHHHHHHHHhcCC
Q 009424 473 --EESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 473 --~~g~~~~a~~~~~~~~~~~ 491 (535)
..+++++|...++.+.+..
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCC
T ss_pred cCCHHHHHHHHHHhccCCccH
Confidence 3455777777766655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-07 Score=84.63 Aligned_cols=189 Identities=11% Similarity=0.011 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-chhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 301 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
|...|++....+ .++..++..+..++...|++++|++++.+....++.+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666655443 3444455566677777777777777777765544322 22556677777777777777777777776
Q ss_pred hcCCCC-----CHHHHHHHHHH--HHHcC--ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHH
Q 009424 380 SVKSSY-----DPRIANLMMSW--YVKEG--NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 380 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 23 23444444444 22234 788888888887654 23433334444477788888888888876662
Q ss_pred hccCC-C---CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 451 AEGAK-S---WRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 451 ~~~~~-g---~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..++. . ..| |..++..++......|+ ++.++++++.+..|..+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 10000 0 124 34455566666666676 778888888877776554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-08 Score=80.10 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
.|..+...+.+.|++++|..+|+++.+.+ +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45555566666666666666666665542 2244555556666666666666666666665543 224445555555566
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (535)
..|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666555421 33445555555555556666666655555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-08 Score=93.83 Aligned_cols=193 Identities=11% Similarity=-0.010 Sum_probs=121.8
Q ss_pred HHhcCCCHhHHHHHHHHhHhC---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-C----cchHHHHHH
Q 009424 255 SCGSQGSTEKMEGVFELMKVD---KAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-D----RVPYHYLLS 325 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~ 325 (535)
.|...|++++|...|.+..+- .+-+++ ..+|+.+...|.+.|++++|...|++..+..... + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666554421 111111 3456666666777777777776666654421111 1 235667777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhCCCCc-----hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH------HHHHHH
Q 009424 326 LYGSV-GKKEEVYRVWNLYRSVFPGVT-----NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP------RIANLM 393 (535)
Q Consensus 326 ~~~~~-g~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l 393 (535)
.|... |++++|+..|++.....+..+ ..++..+...+...|++++|...+++..+..+.... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 888888888887766432211 245777888888889999999999888876544322 156677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC------HhHHHHHHHHHH--ccccHHHHHHHHHHhH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPN------STSWETLAEGHI--RERRILEALSCLKGAF 449 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 449 (535)
..++...|++++|...|++..+. .|+ ...+..++.+|. ..+++++|++.|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 78888899999999999887653 222 113444556664 4567899999998777
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-07 Score=89.82 Aligned_cols=343 Identities=10% Similarity=-0.009 Sum_probs=203.9
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCC-HhhHHHHHhhCCC----CCCCHHHHHHHHHHHH----HcC
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHG-VASAEDFFLSLPD----TLKDRRVYGALLNAYV----RAR 190 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~~----~~~~~~~~~~li~~~~----~~g 190 (535)
++++.+.++|+..++.- |+...+...+....+.++ .+..+.+|+.... ...+...|...+..+. ..+
T Consensus 28 ~~~e~~~~iferal~~~----ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS----YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 66777777777777643 366666666666655553 3445555554332 1245567777766543 345
Q ss_pred CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH-------------hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM-------------KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
+.+.+.++|++.......--...|......-. ..+.+..|..+++.+...--..+...|...+.--.
T Consensus 104 ~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 67777777777766311000111221111100 01123334444444432100013345555554432
Q ss_pred cC--CC-----HhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc
Q 009424 258 SQ--GS-----TEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330 (535)
Q Consensus 258 ~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (535)
.. |- .+.+..+|+++... ++.+...|...+..+.+.|+.+.|..+|++.... +.+...|. .|+..
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred cCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 21 11 34567889988863 4667888998899899999999999999999876 23333333 23322
Q ss_pred CCHHHHHHHHHHHHhhCC------------CCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009424 331 GKKEEVYRVWNLYRSVFP------------GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV 398 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 398 (535)
.+.++. ++.+..... ......|...+..+.+.+.++.|+.+|+.+ +.. ..+..+|......-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 221221 333322110 011245666777777788899999999998 322 234555544333333
Q ss_pred HcC-ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCCh
Q 009424 399 KEG-NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM 477 (535)
Q Consensus 399 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~ 477 (535)
+.+ +.+.|..+|+...+.-.. +...|...++.....|+.+.|..+|+.+. . ....|...+..=...|+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~----k-----~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE----K-----TSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----C-----BHHHHHHHHHHHHHHSCH
T ss_pred HHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----H-----HHHHHHHHHHHHHHCCCH
Confidence 334 699999999999875332 45567777888888999999999999875 2 466788888777788999
Q ss_pred hhHHHHHHHHhc
Q 009424 478 GSKEAFVALLRQ 489 (535)
Q Consensus 478 ~~a~~~~~~~~~ 489 (535)
+.+..++++..+
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-08 Score=80.00 Aligned_cols=123 Identities=15% Similarity=0.259 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
...+...|++++|+.+|+++....+. +...+..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcCH
Confidence 33333444444444444443332221 1223333444444444444444444444433221 333444444444555555
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++|.+.++++.+.... +...|..+...+.+.|++++|.+.++++.
T Consensus 86 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 86 DEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5555555544443221 34444445555555555555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-08 Score=89.14 Aligned_cols=184 Identities=9% Similarity=0.008 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC-cch
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-RD-RVP 319 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~ 319 (535)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+..+. |. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34445555556666666666666666666432 222 455666666666666666666666666553221 11 223
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 320 YHYLLSLYGS--------VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 320 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
+..+..++.. .|++++|+..|+++....+.... ........ ......+ ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~-------~~~~~~~-----------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-VDDATQKI-------RELRAKL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-HHHHHHHH-------HHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-HHHHHHHH-------HHHHHHH-----------HHHHH
Confidence 4444555555 66666666666666554433211 11111000 0000000 11134
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHcc----------ccHHHHHHHHHHhH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKP--NSTSWETLAEGHIRE----------RRILEALSCLKGAF 449 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~ 449 (535)
.+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|++.|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 55667777888888888888777643321 234566666666654 77777777777777
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.95 E-value=3.8e-07 Score=83.29 Aligned_cols=78 Identities=5% Similarity=-0.029 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 195 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
|+..|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444333 23333334444555555555555555554443331 1133344444555555555555555555554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-08 Score=87.67 Aligned_cols=210 Identities=9% Similarity=-0.028 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hh
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LG 354 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~ 354 (535)
+.+...+-.+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|++.....+..+. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566677777778888888888888888876432211 346667777888888888888888888776553222 34
Q ss_pred HHHHHHHHHh--------cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHH
Q 009424 355 YHAMISSLAR--------IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWE 426 (535)
Q Consensus 355 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 426 (535)
+..+..++.. .|++++|...|+++++..+. +......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5566666666 77778888887777765433 2222222111 1111110 112245
Q ss_pred HHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HHHHHHHHHHHHhc----------CChhhHHHHHHHHhcCCC
Q 009424 427 TLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PVNVINFFKACEEE----------SDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~ 492 (535)
.+...|.+.|++++|+..|+++.+ ..|+ ...+..+..++... |++++|...++++++..+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFD------AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH------HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH------HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 677889999999999999999983 3344 34566666777765 889999999999999887
Q ss_pred CChh---hHHHHHHHhHhhhhccc
Q 009424 493 RKEK---DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 493 ~~~~---~~~~L~~~y~~~~~~~~ 513 (535)
.... .+..|...+.+.++.++
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhh
Confidence 7643 45666666655555433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-08 Score=84.12 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+..++.+.|++++|...+++.++..+. +...+..+..+|...|++++|...|++..+..+. +...|..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 344444444444444444444443322 3444444444444444444444444444443222 3444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-08 Score=100.64 Aligned_cols=191 Identities=11% Similarity=-0.038 Sum_probs=148.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 293 IKMGQVEKAEESLRRVE--------SRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 293 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
...|++++|.+.|++.. +. ...+...|..+...|.+.|++++|+..|++..+..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999987 32 1234567888889999999999999999999886554 34678888889999
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
.|++++|.+.|+++.+..+. +...|..+..+|.+.|++++ .+.|++..+.+.. +...|..+...|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887755 67888899999999999999 9999999886554 778899999999999999999999
Q ss_pred HHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCC-----hhhHHHHHHHHhcCCCCC
Q 009424 445 LKGAFAAEGAKSWRPKP-VNVINFFKACEEESD-----MGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 445 ~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~~~ 494 (535)
|+++. .+.|+. ..+..+..++...++ .+...+..+.+.+....+
T Consensus 557 ~~~al------~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 606 (681)
T 2pzi_A 557 LDEVP------PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTE 606 (681)
T ss_dssp HHTSC------TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTS
T ss_pred HHhhc------ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCc
Confidence 99988 566765 456666666655454 344444555555544333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-08 Score=85.66 Aligned_cols=174 Identities=12% Similarity=0.086 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHH----------------HHHHHHhcCCHHHHHHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHY----------------LLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~ 344 (535)
...+-.....+.+.|++++|...|++..+. .| +...|.. +...|.+.|++++|+..|++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445566788999999999999998774 34 3446666 8889999999999999999999
Q ss_pred hhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCH
Q 009424 345 SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN--FDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 345 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 422 (535)
...|. +...+..+...+...|++++|...|+++++..+. +...+..+...|...|+ .+.+...++.... ..|..
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 97655 4467889999999999999999999999987765 78888888888876654 3445555655532 22223
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINF 467 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~l 467 (535)
..+.....++...|++++|+..|+++. .+.|+......+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al------~l~P~~~~~~~l 196 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVI------LRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHT------TTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH------HhCCCHHHHHHH
Confidence 344445666777899999999999999 577886654443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-08 Score=92.10 Aligned_cols=162 Identities=9% Similarity=0.080 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCc--hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-----CHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFP---GVT--NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-----DPR 388 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~ 388 (535)
+|+.+...|.+.|++++|+..|++...... .+. ..++..+...|.. |++++|...+++..+..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 444455555556666666666655443211 111 1345566666666 77777777777765432111 135
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEG----GKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
++..+...|.+.|++++|+..|++..+.. ..+. ...+..+...+...|++++|+..|++.. ..+...-......
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 67777888888888888888888876521 1111 2255566666777789999999988877 3222211111223
Q ss_pred HHHHHHHHHhcCChhhHHHH
Q 009424 464 VINFFKACEEESDMGSKEAF 483 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~ 483 (535)
...++.++ ..|+.+...++
T Consensus 236 l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHH
Confidence 44555555 56776666553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.5e-08 Score=99.66 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=148.9
Q ss_pred hcCCCHhHHHHHHHHhH--------hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 257 GSQGSTEKMEGVFELMK--------VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
...|++++|.+.+++.. +. -+.+...+..+...|.+.|++++|...|++..+... .+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence 78899999999999987 32 255677899999999999999999999999987543 35668888999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
..|++++|+..|++..+..+.. ...+..+..++.+.|++++ .+.|+++.+..+. +...|..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999876553 3678889999999999999 9999999887765 78899999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcccc--------HHHHHHHHHHh
Q 009424 409 FFNSIIEEGGKPNSTSWETLAEGHIRERR--------ILEALSCLKGA 448 (535)
Q Consensus 409 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m 448 (535)
.|++..+.+.. +...|..+..++...++ +++|.+.+..+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99988775332 46677777777766444 45555544443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-07 Score=82.30 Aligned_cols=191 Identities=8% Similarity=-0.031 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh--hHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL--GYH 356 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~ 356 (535)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|+++.+..|..... .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566677788999999999999999987533211 2467778889999999999999999998876664432 344
Q ss_pred HHHHHHHh------------------cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 357 AMISSLAR------------------IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 357 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
.+..++.. .|+.++|...|+.+++..+. +...+.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 34556666666665544322 222221111000 000000
Q ss_pred CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP----VNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
......+...|.+.|++++|+..|+++.+ ..|+. ..+..+..++.+.|++++|.+.++.+...++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLR------DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHH------HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113456778899999999999999993 34543 467778889999999999999999999887765
Q ss_pred hh
Q 009424 495 EK 496 (535)
Q Consensus 495 ~~ 496 (535)
..
T Consensus 218 ~~ 219 (225)
T 2yhc_A 218 LE 219 (225)
T ss_dssp CC
T ss_pred hh
Confidence 43
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-06 Score=77.68 Aligned_cols=223 Identities=8% Similarity=0.032 Sum_probs=151.2
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcC-
Q 009424 187 VRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK--EYDEVESMVSEMKEKGIRLDVYSYNIWLSSC----GSQ- 259 (535)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~----~~~- 259 (535)
.+....++|+++++.+...+ +-+...|+.--..+...| ++++++++++.+.....+ +..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444568888888888764 334556777777777777 888888888888877532 445555443333 344
Q ss_pred --CCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC---
Q 009424 260 --GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE--KAEESLRRVESRITGRDRVPYHYLLSLYGSVGK--- 332 (535)
Q Consensus 260 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 332 (535)
+++++++.+++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+..+ .|-..|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 67888888888888643 667888888877788888877 88888888876543 466677766666666665
Q ss_pred ---HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH-hhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCChhHH
Q 009424 333 ---KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI-EGMEKIFEEWLSVK--SSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 333 ---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
++++++.++++....+. +...|+-.-..+.+.|+. +.+..+...+.+.+ -..++..+..+.+.|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 77777777777776444 445666666666666663 33445555554433 122566777777777777777777
Q ss_pred HHHHHHHHH
Q 009424 407 EAFFNSIIE 415 (535)
Q Consensus 407 ~~~~~~m~~ 415 (535)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-07 Score=80.68 Aligned_cols=186 Identities=8% Similarity=0.003 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc--hHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV--PYH 321 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~ 321 (535)
+...+..+...+.+.|++++|...|+.+.+.....+. ...+..+..+|.+.|++++|...|+++.+..+..... .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677889999999999999999864221221 3578888999999999999999999998754332211 344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 322 YLLSLYGS------------------VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 322 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
.+..++.. .|+.++|+..|+++....|.... .+.... +.+ .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~-a~~a~~----~l~------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY-TTDATK----RLV------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT-HHHHHH----HHH------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh-HHHHHH----HHH------HHHHHH-----
Confidence 44444443 57899999999999986555332 221111 100 011111
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN--STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|.+.++.+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 01123456778889999999999999987533211 2567888899999999999999999888
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-08 Score=82.77 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|...++...+..+. +...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555544333 45555555666666666666666666655543322 23455555566666666666666655544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-08 Score=81.17 Aligned_cols=159 Identities=11% Similarity=-0.064 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW-YV 398 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 398 (535)
+......+.+.|++++|+..|++.....+. +...+..+...+...|++++|...++.+.+..+ ++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 444555666677777777777766554333 234566666777777777777777776655433 44333222211 12
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC---HHHHHHHHHHHHhcC
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK---PVNVINFFKACEEES 475 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~---~~~~~~ll~a~~~~g 475 (535)
..+...+|...|++..+..+. +...+..+...+...|++++|++.|+++. ...|+ ...+..+...+...|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l------~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNIL------KVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHH------HhCcccChHHHHHHHHHHHHHhC
Confidence 223344578888888876444 68889999999999999999999999999 34554 457888889999999
Q ss_pred ChhhHHHHHHHHh
Q 009424 476 DMGSKEAFVALLR 488 (535)
Q Consensus 476 ~~~~a~~~~~~~~ 488 (535)
+.++|...+++.+
T Consensus 159 ~~~~A~~~y~~al 171 (176)
T 2r5s_A 159 QGNAIASKYRRQL 171 (176)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999988765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=83.90 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=79.5
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
..|++++|...+.......+. +...+..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence 445566666666655433211 2344455666666666666666666666665443 56666666666667777777777
Q ss_pred HHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHH-HHHHhcCCCCChhhHHHHHHHhH
Q 009424 444 CLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAF-VALLRQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 444 ~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~L~~~y~ 506 (535)
.|+++. .+.|+ ...|..+...+.+.|+++++.+. +++.++..|.....|......+.
T Consensus 87 ~~~~al------~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 87 CYRRSV------ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHH------HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 776666 23443 44555666666666666554443 46666666665556665555553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=88.63 Aligned_cols=182 Identities=8% Similarity=-0.038 Sum_probs=127.4
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCc--hhhHHHHHHHHHhcCCHh
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP---GVT--NLGYHAMISSLARIGDIE 369 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~g~~~ 369 (535)
.+++++|...|.+. ...|...|++++|...|.+...... .+. ..+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35666666666553 2345566777777777766544211 111 246778888999999999
Q ss_pred hHHHHHHHHHhcCCC---C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHccccHH
Q 009424 370 GMEKIFEEWLSVKSS---Y--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-N----STSWETLAEGHIRERRIL 439 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~ 439 (535)
+|...+++..+.-.. + -..++..+...|.. |++++|+..|++..+..... + ..++..+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999987654211 1 13567788888988 99999999999887531111 1 467888899999999999
Q ss_pred HHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 440 EALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+|++.|+++.+..+..+..+.. ..+..+...+...|++++|...+++.+ ..+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 9999999998433223322222 255666667778899999999999999 6554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-07 Score=85.13 Aligned_cols=166 Identities=8% Similarity=-0.058 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+...+..+...+.+.|++++|...|++..+..+ -+...+..+...+.+.|++++|+..++++....+.+ .........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHHHH
Confidence 334444555555566666666666665544321 133345555556666666666666666554433311 112222222
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccccHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-NSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 439 (535)
.+...++.+.|...+++.....+. +...+..+...|...|++++|...|+++.+..+.. +...+..+...|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 344455555566666665555433 55566666666666666666666666666543221 1445666666666666666
Q ss_pred HHHHHHHHhH
Q 009424 440 EALSCLKGAF 449 (535)
Q Consensus 440 ~A~~~~~~m~ 449 (535)
+|...|++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6e-08 Score=79.91 Aligned_cols=141 Identities=8% Similarity=0.002 Sum_probs=71.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 371 (535)
+...|++++|+..++....... -+...+-.+...|.+.|++++|++.|++..+..+. +...|..+...+...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 3344555555555555432211 12233444555555556666666666555554333 234555555666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAF-FNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
...|+..++..+. +...+..+...|.+.|+.++|.+. +++..+..+. +...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666665554433 455556666666666665554443 3555554332 4445554444444444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-07 Score=85.15 Aligned_cols=164 Identities=10% Similarity=-0.055 Sum_probs=130.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH-HH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN-LM 393 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l 393 (535)
.+...+..+...+.+.|++++|+..|++.....+.- ...+..+...+...|++++|...++.+....+ +..... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHH
Confidence 344566777788899999999999999998876553 35678888999999999999999998866543 443332 33
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC---HHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK---PVNVINFFKA 470 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~---~~~~~~ll~a 470 (535)
...+...++.++|...+++..+..+. +...+..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~------~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLR------XDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTGGGGHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh------cccccccchHHHHHHHH
Confidence 33466778888899999998886554 788899999999999999999999999993 3454 4578888899
Q ss_pred HHhcCChhhHHHHHHHHh
Q 009424 471 CEEESDMGSKEAFVALLR 488 (535)
Q Consensus 471 ~~~~g~~~~a~~~~~~~~ 488 (535)
+...|+.++|...+++.+
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 999999999988887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.4e-06 Score=76.39 Aligned_cols=227 Identities=7% Similarity=0.007 Sum_probs=119.8
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcccCCCcchHHHHHHHH----Hhc---CCHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG--QVEKAEESLRRVESRITGRDRVPYHYLLSLY----GSV---GKKE 334 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 334 (535)
+|+++++.+..-. +-+..+|+.--..+...| +++++++.++.+....+ .+..+|+.--..+ ... ++++
T Consensus 51 ~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 51 RALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4444444444321 223334444444444444 55555555555544322 1333444332222 222 4555
Q ss_pred HHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHh--hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC------hhHH
Q 009424 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIE--GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN------FDKA 406 (535)
Q Consensus 335 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A 406 (535)
+++.+++.+....++ +...|+.-.-.+.+.|.++ ++.+.++.+++..+. |...|+.-...+.+.|+ ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666666554333 2344444444455555555 666666666665544 55556555555555554 6677
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH-HHHHHHHhHHhccCCC--CCCCHHHHHHHHHHHHhcCChhhHHHH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE-ALSCLKGAFAAEGAKS--WRPKPVNVINFFKACEEESDMGSKEAF 483 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~g--~~p~~~~~~~ll~a~~~~g~~~~a~~~ 483 (535)
++.++++....+. |...|+.+-..+.+.|+..+ +.++..+.. ..+ -..+...+..+...+.+.|+.++|.++
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFV----DLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTE----EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHH----hccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7777777766555 67777776666666665433 444555555 211 123455666666677777777777777
Q ss_pred HHHHhc-CCCCChhhHHH
Q 009424 484 VALLRQ-PGYRKEKDYMS 500 (535)
Q Consensus 484 ~~~~~~-~~~~~~~~~~~ 500 (535)
++.+.+ .++.....|..
T Consensus 281 ~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhccChHHHHHHHH
Confidence 777764 45443334443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=96.67 Aligned_cols=151 Identities=12% Similarity=-0.001 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHH
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
.|++++|...|++..+... .+...|..+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4677888888887765321 24557777778888888888888888888775443 335677777888888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc---ccHHHHHHHHHHhH
Q 009424 375 FEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE---RRILEALSCLKGAF 449 (535)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 449 (535)
+++..+.... +...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8887776544 5677778888888888888888888887775443 567777778888887 88888888888887
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-07 Score=78.12 Aligned_cols=176 Identities=8% Similarity=-0.035 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----CHhHHHHHH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG----STEKMEGVF 269 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g----~~~~a~~~~ 269 (535)
+|++.|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..|-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666655 55666666666666666666666666666654 44555555555555 4 666666666
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccC-CCcchHHHHHHHHHh----cCCHHHHHHHH
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESRITG-RDRVPYHYLLSLYGS----VGKKEEVYRVW 340 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 340 (535)
+...+ .-+...+..|...|.. .+++++|...|++..+.|.. .+...+..|-..|.. .++.++|+..|
T Consensus 77 ~~A~~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVE----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHH----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHH----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66654 2245555556555555 55666666666665543321 013444555555555 45555555555
Q ss_pred HHHHhhCCCCchhhHHHHHHHHHhc-C-----CHhhHHHHHHHHHhcC
Q 009424 341 NLYRSVFPGVTNLGYHAMISSLARI-G-----DIEGMEKIFEEWLSVK 382 (535)
Q Consensus 341 ~~m~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 382 (535)
++....+.. ...+..+...|... | +.++|...++...+.|
T Consensus 153 ~~A~~~~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLSRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTSCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555443111 12333444444322 1 4555555555555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=7e-06 Score=81.70 Aligned_cols=345 Identities=11% Similarity=0.004 Sum_probs=214.8
Q ss_pred CCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC-hHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHH----hhCC
Q 009424 84 DNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRR-YKHALEVYDWMNNRGERFRLSASDAAIQLDLIA----KVHG 158 (535)
Q Consensus 84 g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~----~~g~ 158 (535)
|+.+ .+..+|++.+. ..|+...|..-++-..+.++ .+....+|+.++..-.....+...+...+..+. ..++
T Consensus 28 ~~~e-~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYR-SLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHH-HHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHH-HHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6677 88888888877 45788888888777776653 345677788777642111234555655555543 3467
Q ss_pred HhhHHHHHhhCCCCCCC--HHHHHHHHHHHH-------------HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 159 VASAEDFFLSLPDTLKD--RRVYGALLNAYV-------------RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 159 ~~~A~~~f~~~~~~~~~--~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
++.++++|++....+.. ...|......-. ..+.+..|+.+++++...--..+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88888898887654211 123332222111 112333455555544431000123456665554332
Q ss_pred cC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 224 IK--E-----YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 224 ~g--~-----~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
.+ - .+.+..+|++++... +.+...|...+.-+...|+.+.|..+++..... +.+...|.. |+...
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVM 256 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhc
Confidence 21 1 345678899988763 456778888888888999999999999999963 444444432 33322
Q ss_pred CHHHHHHHHHHHHhcc---------c---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 297 QVEKAEESLRRVESRI---------T---GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
..++. ++.+.+.- . ......|...+..+.+.+..+.|..+|++. .. +......|......-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH
Confidence 22222 33332210 0 011245777777777788899999999999 32 22333334322222222
Q ss_pred -cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 365 -IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 365 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
.++.+.|..+|+...+.-.. ++..+...++...+.|+.+.|..+|++.. .....|...+..=...|+.+.+.+
T Consensus 332 ~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 33699999999999876433 46667778888899999999999999973 267788888887788899999999
Q ss_pred HHHHhHH
Q 009424 444 CLKGAFA 450 (535)
Q Consensus 444 ~~~~m~~ 450 (535)
+++++..
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8988873
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-06 Score=75.53 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHHH
Q 009424 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK----EYDEVESMVSEMKEKGIRLDVYSY 249 (535)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~pd~~~~ 249 (535)
.+..++..|-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|+++|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367778888888888889999999998888877 67777778777777 6 8889999998888776 56777
Q ss_pred HHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcc
Q 009424 250 NIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIK----MGQVEKAEESLRRVESRITGRDRV 318 (535)
Q Consensus 250 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~ 318 (535)
..|-..|.. .+++++|...|++..+. .++ ...+..|..+|.. .++.++|...|++..+. ..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~ 163 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGY 163 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHH
Confidence 777777776 78899999999988853 232 6788888888888 78899999999988764 23455
Q ss_pred hHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 009424 319 PYHYLLSLYGSV-G-----KKEEVYRVWNLYRSVFP 348 (535)
Q Consensus 319 ~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~~ 348 (535)
.+..+-..|... | +.++|+..|+...+.|.
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666677777653 3 78999999988877653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.6e-07 Score=92.01 Aligned_cols=150 Identities=7% Similarity=-0.102 Sum_probs=62.8
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELL 198 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 198 (535)
|++++|.+.++...+.. +.+...+..+...|...|++++|.+.|++..+. +.+...|..+...|.+.|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555555443 233444444555555555555555555544433 22344455555555555555555555
Q ss_pred HHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC---CCHhHHHHHHHHhHh
Q 009424 199 IDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ---GSTEKMEGVFELMKV 274 (535)
Q Consensus 199 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 274 (535)
|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 55544432 2233444445555555555555555555544442 12344444444445444 555555555555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-06 Score=74.94 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.+...+...|++++|...+++.. .|+...+..+...|.+.|++++|...|++..+.... +...|..+...|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444445555555555555432 334555555555555555555555555555554322 4455555555555556
Q ss_pred cHHHHHHHHHHhHHhccCCC----------CCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 437 RILEALSCLKGAFAAEGAKS----------WRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g----------~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
++++|++.|+++.+..+... ..|+. ..+..+..++...|++++|.+.+++..+..+...
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 66666665555552211111 11211 3444555555566666666666666665555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-06 Score=76.38 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHh----c-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-Hh
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLS----V-KSSY-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEE----GGKPN-ST 423 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~ 423 (535)
++.+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 44455555555555555555554442 1 1111 1234555666666666666666666555431 11111 45
Q ss_pred HHHHHHHHHHcccc-HHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERR-ILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~-~~~A~~~~~~m~ 449 (535)
+|..+...|.+.|+ +++|.+.++++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666666666663 466666666665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=8.4e-06 Score=75.39 Aligned_cols=167 Identities=11% Similarity=-0.038 Sum_probs=123.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch-h----hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HHHHHH
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-L----GYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PRIANL 392 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 392 (535)
.+..+...|++++|..++++........+. . .+..+...+...+++++|...++.+.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677888888888888888774333222 1 2334666667778999999999998874332 22 336899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH----c-CCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHH
Q 009424 393 MMSWYVKEGNFDKAEAFFNSIIE----E-GGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVI 465 (535)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~ 465 (535)
+...|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|++.++++.+..+..+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999874 1 11112 347888899999999999999999999854434444443 45777
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHhc
Q 009424 466 NFFKACEEESD-MGSKEAFVALLRQ 489 (535)
Q Consensus 466 ~ll~a~~~~g~-~~~a~~~~~~~~~ 489 (535)
.+..++...|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999994 6999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=6.2e-07 Score=73.54 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+.+.|++++|...|+.+.+..+. +...|..+..+|.+.|++++|...|++..+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 4445555566666666666666666555443 5556666666666666666666666666654433 4555666666666
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
+.|++++|++.|+++.
T Consensus 116 ~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666666
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-05 Score=71.73 Aligned_cols=197 Identities=7% Similarity=-0.088 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC-HhhHHHH
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVG--KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD-IEGMEKI 374 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~ 374 (535)
+++++.+++.+....+ .+..+|+.-.-.+.+.+ .+++++.+++.+....+. +...|+.-.-.+...|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4455555555554322 24445555444444445 356666666666654433 33445444444555555 4666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-----
Q 009424 375 FEEWLSVKSSYDPRIANLMMSWYVKE--------------GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE----- 435 (535)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 435 (535)
+..+++..+. |...|+.....+.+. +.++++++.++......+. |...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 6666665554 556665554444443 4467888888888876555 777777665555544
Q ss_pred ------ccHHHHHHHHHHhHHhccCCCCCCCHHHHHH--HH---HHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 436 ------RRILEALSCLKGAFAAEGAKSWRPKPVNVIN--FF---KACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 436 ------g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~--ll---~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+.++++++.++++. .+.||. .|.. ++ .+....|..++....++++++.+|....-|..|...
T Consensus 246 ~~~~~~~~l~~el~~~~ell------e~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQ------ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHH------HHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH------hhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 56899999999999 355665 3332 21 222245778899999999998888777778777665
Q ss_pred h
Q 009424 505 T 505 (535)
Q Consensus 505 y 505 (535)
+
T Consensus 319 ~ 319 (331)
T 3dss_A 319 F 319 (331)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.2e-07 Score=70.18 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+......+.+.|++++|.+.|++.++..+. +...|..+..+|.+.|++++|+..|++..+.+.. +...|..+...|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 333444444444444444444444443322 3444444444444444444444444444443222 34444444444444
Q ss_pred cccHHHHHHHHHHhH
Q 009424 435 ERRILEALSCLKGAF 449 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~ 449 (535)
.|++++|++.|+++.
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-06 Score=69.12 Aligned_cols=127 Identities=7% Similarity=-0.025 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK 399 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 399 (535)
|..+...+...|++++|+..|++.....+. +...+..+...+...|++++|...+++..+..+. +...+..+...|.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 444445555556666666666655554332 2345555666666666666666666666655432 55666677777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHH--HHHHccccHHHHHHHHHHhH
Q 009424 400 EGNFDKAEAFFNSIIEEGGKPNSTSWETLA--EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|++++|...|++..+.... +...+..+. ..+...|++++|++.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777665333 444443333 33566777777777777665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.3e-06 Score=72.50 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCC------------
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKA------------ 277 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------ 277 (535)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...|+...+...
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 33344444444444444444444444444332 12333444444444444444444444444433110
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 278 -VNP-NWTTFSTMATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 278 -~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (535)
..| ....+..+...|.+.|++++|...|+...+
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 011 124566666666677777777777766655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=68.23 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
..+......|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|++.|+++.+ +.| +...|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~a~~~ 86 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR------LDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH------hhhhhhHHHHH
Confidence 45667788999999999999999999987554 789999999999999999999999999993 445 4568888
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+..++...|++++|.+.|++.++..|.....+..|.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 88999999999999999999999998887777666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-05 Score=70.81 Aligned_cols=231 Identities=9% Similarity=0.039 Sum_probs=142.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK-EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
++.+-....+.+..++|+++++++...+ +-+..+|+.--..+...| .+++++++++.+..... -+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3444444445556678888888888764 334556777777777777 58888888888887753 36667776655555
Q ss_pred cC-C-CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 258 SQ-G-STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE--------KAEESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 258 ~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
+. + ++++++++++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++.+..+ .|...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 55 5 7788888888888532 567778877666666655555 78888887776543 3666777766666
Q ss_pred HhcCC-------HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH--------------------hhHHHHHHHHHh
Q 009424 328 GSVGK-------KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI--------------------EGMEKIFEEWLS 380 (535)
Q Consensus 328 ~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~ 380 (535)
.+.+. ++++++.+++.....+. |...|+-+-..+.+.|.. .........+..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 66665 57777777777765444 445555555555544432 112222222211
Q ss_pred cC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 381 VK-----SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 381 ~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.+ ..+++.....+++.|...|+.++|.++++.+.+
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11 023555666666677766777777777776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=67.11 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINF 467 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~l 467 (535)
..+..+...+...|++++|.+.|+++.+.... +...|..+...+...|++++|+.+++++.+ .. ..+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~l 83 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LD-PNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hC-CccHHHHHHH
Confidence 44455555555555555555555555543221 445555555555556666666666665552 11 1234455555
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
...+...|++++|...++++.+..+.....+..+...+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55555666666666666665555544444444444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-07 Score=73.64 Aligned_cols=103 Identities=14% Similarity=-0.024 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNV 464 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~ 464 (535)
+...+..+...+.+.|++++|...|++..+..+. +...|..+...|...|++++|++.|+++. .+.|+ ...|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al------~l~P~~~~~~ 107 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAF------ALGKNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHH------hhCCCCcHHH
Confidence 4557778888999999999999999999987655 78999999999999999999999999999 34554 5688
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
..+-.++...|++++|.+.|++.++..+.++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888999999999999999999998876654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-05 Score=73.23 Aligned_cols=166 Identities=11% Similarity=-0.054 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-----chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---c--hh
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-----VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV---T--NL 353 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~--~~ 353 (535)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+++........ . ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666677777777776665543211110 112233444555666666666666655422111 1 13
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHh---cCCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCC-CH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLS---VKSS-Y--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG----GKP-NS 422 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 422 (535)
+++.+...|...|++++|...++++.+ .... + ...++..+...|.+.|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 555666666666666666666666552 1111 0 11455666666666666666666666654321 000 14
Q ss_pred hHHHHHHHHHHccccHHHH-HHHHHHhH
Q 009424 423 TSWETLAEGHIRERRILEA-LSCLKGAF 449 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 449 (535)
.+|..+...|.+.|++++| ...++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4556666666666666666 55566555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.2e-06 Score=75.47 Aligned_cols=171 Identities=11% Similarity=-0.032 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC---CC--HH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-----LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS---YD--PR 388 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 388 (535)
.+...+..+...|++++|++.+.+........+. ..+..+...+...|++++|...+....+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677888999999999999988775443221 22344566677889999999999998754322 12 45
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCC-----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-H
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEE-GGKPN-----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-P 461 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~ 461 (535)
+++.+...|...|++++|...|++..+. ...|+ ..+|..+...|...|++++|++.+++..+..+..+.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999998731 11122 258888999999999999999999999843222222222 4
Q ss_pred HHHHHHHHHHHhcCChhhH-HHHHHHHhc
Q 009424 462 VNVINFFKACEEESDMGSK-EAFVALLRQ 489 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~~~a-~~~~~~~~~ 489 (535)
.+|..+...+...|++++| ...+++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5777888899999999999 777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=79.25 Aligned_cols=97 Identities=12% Similarity=-0.043 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++..+... .+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3444445555555555555555555555321 23445555555555555555555555555543211 12334444455
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 009424 326 LYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~ 345 (535)
+|...|++++|+..|++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-06 Score=74.64 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=54.1
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCC-chhhHHHHHHHHHhcCCH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF----PGV-TNLGYHAMISSLARIGDI 368 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~ll~~~~~~g~~ 368 (535)
..|++++|.++++.+.. .......++..+...|...|++++|+..+++..... ..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444322 111233455555566666666666666666554411 111 113344444555555555
Q ss_pred hhHHHHHHHHHhc---CC-CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 369 EGMEKIFEEWLSV---KS-SY--DPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 369 ~~a~~~~~~~~~~---~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
++|...+.+..+. .. .+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555544432 00 00 12233444444455555555555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-06 Score=72.56 Aligned_cols=116 Identities=9% Similarity=0.097 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCh--hHHH
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW-YVKEGNF--DKAE 407 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 407 (535)
|++++|+..+++.....+. +...+..+...+...|++++|...++.+.+..+. +...+..+..+ |...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3344444444444333221 1233444444444444444444444444433322 33344444444 4444444 5555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|++..+.... +...|..+...|...|++++|++.|+++.
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555544443222 34444444444555555555555555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-05 Score=63.24 Aligned_cols=60 Identities=15% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..+...+...|++++|...++.+.+.... +..++..+...|...|++++|...|+++.+
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333344444444444444444444333221 333444444444444444444444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=78.42 Aligned_cols=141 Identities=11% Similarity=-0.059 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHH
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN--STSWETLAEGHI 433 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~ 433 (535)
......+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 345566777788888888887765543 333255555567777888888888887443321 111 235666777788
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRPK--PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+.|++++|++.|++.. .....|. .......-.++.+.|+.++|..+|+++....+. ...+..|.+.
T Consensus 183 ~LG~~~eAl~~l~~a~----~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 183 NLALFTEAERRLTEAN----DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HTTCHHHHHHHHHHHH----TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHh----cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 8888888888888887 3333254 234555556777888888888888888887777 5566666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-06 Score=68.86 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
..|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555555566666666665555432 2234445555555555555555555555555442 22344444455555
Q ss_pred hcCCCHhHHHHHHHHhHh
Q 009424 257 GSQGSTEKMEGVFELMKV 274 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~ 274 (535)
...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-06 Score=65.77 Aligned_cols=112 Identities=14% Similarity=-0.029 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINF 467 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~l 467 (535)
.+..+...+...|++++|...|++..+.... +...|..+...+...|++++|++.+++..+ ..| +...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~ 86 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC------IDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh------cCccCHHHHHHH
Confidence 3444444555555555555555555443221 344455555555555555555555555551 122 23344444
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHh
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDE 507 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~ 507 (535)
...+...|++++|.+.+++..+..+.....+..+..+|..
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4455555555555555555555544443444444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-06 Score=66.64 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNV 464 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~ 464 (535)
+...+..+...+.+.|++++|...|++..+.... +...|..+...|...|++++|++.++++.+ ..| +...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~ 87 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQ------LEPTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH------HCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCCchHHH
Confidence 3455556666666666666666666666654322 456666666666666666777666666662 222 34555
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHh
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDE 507 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~ 507 (535)
..+..++...|++++|.+.+++..+..+.....+..+..+|..
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5566666666677777777766666555544455555555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00013 Score=67.97 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=122.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG-STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM-G-QVE 299 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 299 (535)
+.+..++|+++++.++..+. -+..+|+.--..+...| .+++++.+++.+.+.. +.+..+|+.-...+.+. + +.+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence 33444567777777666542 24445555555555555 4666666666666532 45556666655555554 5 566
Q ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 300 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
+++.+++.+.+... .|-..|+.-.-.+.+.|.++ . .+ ...+.++.+..++++
T Consensus 143 ~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~-------------~-~~-------------~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLG-------------R-IS-------------EAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTT-------------C-CC-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccc-------------c-cc-------------hhhHHHHHHHHHHHH
Confidence 66666666654321 24444443332222222222 0 00 001125555666665
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH--------------
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGN-------FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI-------------- 438 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-------------- 438 (535)
+..+. |...|+.....+.+.++ ++++++.+++.....+. |...|+-+-..+.+.|+.
T Consensus 195 ~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~ 272 (349)
T 3q7a_A 195 RVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTAS 272 (349)
T ss_dssp HHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-
T ss_pred HhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 55544 55566555555555554 56677777776665544 666666655555554443
Q ss_pred ------HHHHHHHHHhHHhccC-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 439 ------LEALSCLKGAFAAEGA-KSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 439 ------~~A~~~~~~m~~~~~~-~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
.+..+...++....+. ..-.++...+..+...|...|+.++|.++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 273 KLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp -------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2333333333310000 0113466677778888888888889999998876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=71.93 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
..+..+...+.+.|++++|...|++.....+. +...|..+...|...|++++|++.|+++.+ +.| +...+..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------l~p~~~~~~~~ 94 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV------MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCTHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCchHHHH
Confidence 34444555555556666666666555554332 455555555555556666666666665552 223 2344445
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+..++...|++++|.+.+++.++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 555555556666666666655554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-05 Score=76.21 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+...+..+...|.+.|++++|...|++..+.. |+...+ ..+.+..+- .. ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~~-------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL-------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-HH-------HHHHHHHHHH
Confidence 45578888888888888888888888877643 332100 001111000 00 0234556666
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
++.+.|++++|...++++++..+. +...|..+..+|...|++++|...|++..+..+. +...+..+...+.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777766665443 5666777777777777777777777777765433 56667777777777777776
Q ss_pred H-HHHHHHhH
Q 009424 441 A-LSCLKGAF 449 (535)
Q Consensus 441 A-~~~~~~m~ 449 (535)
| .++|+.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 34555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=8.9e-06 Score=64.30 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+...|++++|...++...+.... +...+..+...|...|++++|...+++..+.... +...|..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 3444455555555555555555555544322 4555555566666666666666666665554322 4555556666666
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCC
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESD 476 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~ 476 (535)
..|++++|.+.|+++.+ ..| +...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE------LDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHh------cCccchHHHHHHHHHHHHHhc
Confidence 66666666666666652 223 33444444444444444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-06 Score=73.26 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=55.4
Q ss_pred hCCHhhHHH---HHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCC-cCcchHHHHHHHHHhcCCh
Q 009424 156 VHGVASAED---FFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRD----KGYA-VHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 156 ~g~~~~A~~---~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~ 227 (535)
.|++++|.+ .+..-+. ....+++.+...|...|++++|...|++..+ .+.. ....++..+...+...|++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455555555 3333221 2345566666666666666666666665543 1111 1223455555556666666
Q ss_pred hHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 228 DEVESMVSEMKEK----GIRL--DVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 228 ~~a~~~~~~m~~~----g~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666665554432 1011 12234444445555555555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=70.59 Aligned_cols=95 Identities=16% Similarity=0.003 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..+..+...+...|++++|...|+.+....+. +...|..+..+|...|++++|...|++.....+. +...|..+...|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34555666677777777777777777665543 6667777777777777777777777777765443 566677777777
Q ss_pred HccccHHHHHHHHHHhH
Q 009424 433 IRERRILEALSCLKGAF 449 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~ 449 (535)
...|++++|++.|+++.
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777777777
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.8e-06 Score=72.98 Aligned_cols=189 Identities=10% Similarity=-0.084 Sum_probs=109.3
Q ss_pred ccCCCCccHHHHHHHHHhCCCCCC-HHHHHHH-------HHHHHHccChHHHHHHHHHHHhcC-----CCcc--------
Q 009424 82 LMDNPQLGSASVLNDWEKGGRSLT-KWELCRV-------VKELRKFRRYKHALEVYDWMNNRG-----ERFR-------- 140 (535)
Q Consensus 82 ~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g-----~~~~-------- 140 (535)
+.+++. .|...|.+..+ ..|+ ...|..+ ...+.+.++..+++..+...+... ..+.
T Consensus 18 ~~~d~~-~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEA-RSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHH-HHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHH-HHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 567777 88888888877 4453 3445444 344555555555555555444411 0000
Q ss_pred -----cCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC--cch
Q 009424 141 -----LSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH--SLP 213 (535)
Q Consensus 141 -----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~ 213 (535)
............+...|++++|.++|+.+....|+....-.+...+.+.+++++|+..|+...... .|. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 001233345566777778888888887776654544355555556777777777777776443321 110 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHhHh
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD--VYSYNIWLSSCGSQGSTEKMEGVFELMKV 274 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 274 (535)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566667777777777777776664332243 22344445566667777777777777664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-06 Score=71.20 Aligned_cols=126 Identities=8% Similarity=0.114 Sum_probs=102.9
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccccH--H
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG-HIRERRI--L 439 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 439 (535)
...|++++|...++...+..+. +...|..+...|...|++++|...|++..+.... +...|..+... |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 4568899999999998877654 7889999999999999999999999999886444 67788888888 7789998 9
Q ss_pred HHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 440 EALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+|++.++++.+ ..|+ ...+..+...+...|++++|...++++.+..+....
T Consensus 99 ~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALA------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 99999999993 3454 567778888999999999999999999998877643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-05 Score=63.94 Aligned_cols=94 Identities=19% Similarity=0.073 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+......+.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|...|++..+.... +...|..+...+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3445555566666666666666666555433 5566666666666666666666666666664333 4556666666666
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
..|++++|++.|+++.
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 6666666666666666
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-06 Score=77.20 Aligned_cols=98 Identities=14% Similarity=-0.045 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHH
Q 009424 105 TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALL 183 (535)
Q Consensus 105 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li 183 (535)
+...+..+...+...|++++|...+...++.. +.+...+..+...|.+.|++++|...+++.... +.+...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34556666677778888888888888887765 345666677777777777777777777776655 34566777777
Q ss_pred HHHHHcCCHhHHHHHHHHHHHC
Q 009424 184 NAYVRARMRGNAELLIDKMRDK 205 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~ 205 (535)
..|.+.|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777776553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-05 Score=61.85 Aligned_cols=108 Identities=10% Similarity=-0.065 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
..+..+...+...|++++|...|++....... +...|..+...+...|++++|.+.++++.+ ..| +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~ 77 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD------LKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHH------hCcccHHHHHH
Confidence 44555555666666666666666666554322 455566666666666666666666666662 223 3445555
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHH
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLI 502 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~ 502 (535)
+..++...|++++|.+.+++..+..+.....+..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666666666666666666666555444444333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.9e-06 Score=64.66 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISS 361 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 361 (535)
...|..+...|.+.|++++|...|++..+... .+...|..+...|...|++++|+..+++.....+. +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 34444555555555555555555555443211 12333444444444444444444444444433222 12233333333
Q ss_pred HHhcCCHhhHHHHHHHH
Q 009424 362 LARIGDIEGMEKIFEEW 378 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~ 378 (535)
+...|++++|.+.+++.
T Consensus 94 ~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 34444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-05 Score=63.19 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..+..+...+...|++++|...+...++..+. +...+..+..+|...|++++|...|++..+.... +...|..+...|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 34445555555555555555555555544332 4455555555555556666666655555554332 455555555556
Q ss_pred HccccHHHHHHHHHHhH
Q 009424 433 IRERRILEALSCLKGAF 449 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~ 449 (535)
...|++++|++.|+++.
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 66666666666666555
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-05 Score=74.92 Aligned_cols=157 Identities=8% Similarity=-0.091 Sum_probs=80.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+++++|++.++...+.. +-+...+..+...+.+.|++++|...|++..+. .|+... -..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-----------~~~~~~~~~ 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESS-----------FSNEEAQKA 191 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCC-----------CCSHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhcccc-----------CChHHHHHH
Confidence 34455555544333321 125677888899999999999999999998864 232100 000011000
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
- . .....|..+..+|.+.|++++|+..|++.....+. +...+..+..++...|++++|...|+++++..+.
T Consensus 192 ~-~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 192 Q-A-------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp H-H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred H-H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 0 0 01123344444444444444444444444443222 2234445555555555555555555555544333
Q ss_pred CCHHHHHHHHHHHHHcCChhHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A 406 (535)
+...+..+..++.+.|+.++|
T Consensus 263 -~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 263 -NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.6e-06 Score=73.67 Aligned_cols=95 Identities=7% Similarity=-0.038 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..+..+..++...|++++|...++..++.... +...+..+..+|...|++++|...|++..+.... +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 34556666666677777777777766665433 5566666667777777777777777776664333 455666666666
Q ss_pred HccccHHHHH-HHHHHhH
Q 009424 433 IRERRILEAL-SCLKGAF 449 (535)
Q Consensus 433 ~~~g~~~~A~-~~~~~m~ 449 (535)
...++.+++. ..|..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6666555555 4444444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=74.28 Aligned_cols=148 Identities=10% Similarity=-0.058 Sum_probs=71.3
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCc----------------c
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHS----------------L 212 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~ 212 (535)
+......|++++|.+.|+.-... ......|..+...+.+.|++++|...|++..+.. +.+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence 34445556666666666543321 1234456677777888888888888888877642 1111 3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 292 (535)
.|..+...|.+.|++++|+..++...+.. +.+...+..+..++...|++++|...|+...+.. +.+..++..+...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 44445555555555555555555555442 2234444445555555555555555555544321 22344444444444
Q ss_pred HhcCCHHHH
Q 009424 293 IKMGQVEKA 301 (535)
Q Consensus 293 ~~~g~~~~A 301 (535)
...++.+++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444443333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-06 Score=62.93 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC---CHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP---KPVN 463 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p---~~~~ 463 (535)
...+..+...+.+.|++++|...|++..+.... +...|..+...+...|++++|++.|+++.+ ..| +...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~ 78 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN------VIEDEYNKDV 78 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TSCCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccchHHH
Confidence 344455555666666666666666666554332 455566666666666666666666666662 223 3455
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHhcCCCCC
Q 009424 464 VINFFKACEEE-SDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 464 ~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~ 494 (535)
+..+...+... |++++|.+.++...+..+.+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 55556666666 66666666666666655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9.8e-06 Score=65.68 Aligned_cols=91 Identities=16% Similarity=0.022 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.+...+.+.|++++|...|+.+....+. +...|..+..+|.+.|++++|...|++.....+. +...|..+...|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 3344444555555555555554444332 4444445555555555555555555555443322 3444444555555555
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
++++|++.|+++.
T Consensus 101 ~~~~A~~~~~~al 113 (142)
T 2xcb_A 101 DLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=63.41 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVI 465 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~ 465 (535)
...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|++.++++.+ +.| +...|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~ 76 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE------KDPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCCCcHHHHH
Confidence 456777888899999999999999999987554 788999999999999999999999999993 345 456788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCC------CCChhhHHHHHHHh
Q 009424 466 NFFKACEEESDMGSKEAFVALLRQPG------YRKEKDYMSLIGLT 505 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~L~~~y 505 (535)
.+..++...|++++|.+.+++..+.. +........+..+.
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88889999999999999999999887 44444555544443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-05 Score=58.83 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+...|++++|...++...+..+. +...+..+...|.+.|++++|...+++..+.... +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3455556666666666666666666654432 5566666667777777777777777776665332 5666667777777
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 7777777777777777
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-05 Score=61.81 Aligned_cols=93 Identities=14% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+..+...+.+.|++++|...++.+++..+. +...|..+..++...|++++|+..|++..+..+. +...|..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344555666667777777777766665543 5666666667777777777777777776665443 55666667777777
Q ss_pred cccHHHHHHHHHHhH
Q 009424 435 ERRILEALSCLKGAF 449 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~ 449 (535)
.|++++|++.++++.
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777777766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-05 Score=62.82 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCC----HhHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG--KPN----STSWET 427 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~ 427 (535)
.+..+...+.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|++.|++..+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556666777777777777777777766544 566777777777777777777777777665321 111 235666
Q ss_pred HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHH
Q 009424 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVI 465 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~ 465 (535)
+...+...|++++|++.|++.. ...||+.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal------~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL------SEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH------HHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH------hhCcCHHHHH
Confidence 6677777888888888888877 2456655443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00038 Score=64.52 Aligned_cols=131 Identities=6% Similarity=-0.096 Sum_probs=68.0
Q ss_pred hhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC-hhHHHHHHH
Q 009424 160 ASAEDFFLSLPDT-LKDRRVYGALLNAYVRAR--MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE-YDEVESMVS 235 (535)
Q Consensus 160 ~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~ 235 (535)
+++..+++.+... +.+..+|+.--..+.+.| .+++++.+++++.+.. +-|..+|+.-.-.+...|. ++++++.+.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444443332 345566665555555555 3566666666666653 3355566655555555565 466666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcC--------------CCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh
Q 009424 236 EMKEKGIRLDVYSYNIWLSSCGSQ--------------GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294 (535)
Q Consensus 236 ~m~~~g~~pd~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 294 (535)
.+.+..+ -|...|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+
T Consensus 170 ~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 170 SLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHS
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 6666543 2555555444433332 23455555555555322 4455555544333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=64.99 Aligned_cols=104 Identities=11% Similarity=-0.011 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNV 464 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~ 464 (535)
+...+..+...+.+.|++++|...|++....++. +...|..+...|.+.|++++|+..|+++.+ +.| +...+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~ 89 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL------MDINEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCTHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCcHHH
Confidence 3455666778899999999999999999987554 788899999999999999999999999993 345 45677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..+..++...|++++|.+.++..++..+.+..
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 78888999999999999999999988765443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=65.90 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+...|++++|...|++.++.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+...|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444455555555555555555555544332 4445555555555555555555555555543322 3445555555555
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
..|++++|++.|+++.
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 5555555555555555
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=7e-06 Score=65.12 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PVN 463 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~~ 463 (535)
..+..+...+.+.|++++|+..|++..+..+. +...|..+...|.+.|++++|++.++++.+..+.. .++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET--RADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc--chhhHHHHHH
Confidence 45667888999999999999999999987554 78889999999999999999999999998432211 112 135
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
|..+-.++...|++++|.+.+++.++..+.|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 66677788899999999999999887665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-05 Score=65.05 Aligned_cols=100 Identities=10% Similarity=-0.088 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ 466 (535)
..+..+...|.+.|++++|+..|++..+.... +...|..+...|.+.|++++|++.|+++.+ +.|+ ...|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~ 84 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV------VDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHH
Confidence 34444555555555555555555555544322 445555555555555555555555555551 2232 344444
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
+..++...|++++|.+.+++.++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 4555555555555555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=6e-05 Score=73.85 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNW---------------TTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.+.+.|++++|.+.|..+.+...-..+. ..+..+...|.+.|++++|.+++..+.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455666666666666665432111110 124445555555555555555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-05 Score=62.35 Aligned_cols=102 Identities=9% Similarity=-0.056 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVN 463 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~ 463 (535)
.+...+..+...+.+.|++++|...|++..+.... +...|..+...|...|++++|+..++++.+ +.| +...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~ 79 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE------LDGQSVKA 79 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCchhHHH
Confidence 36788899999999999999999999999887544 688999999999999999999999999993 334 4667
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+..+..++...|++++|...+++..+..+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888999999999999999999877655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-05 Score=61.49 Aligned_cols=94 Identities=11% Similarity=0.257 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCC----HhHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG--KPN----STSWETL 428 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 428 (535)
+..+...+...|++++|...++...+.... +...+..+...|...|++++|...+++..+... .++ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 334444444445555555555444443321 344444444444444444444444444443211 011 3334444
Q ss_pred HHHHHccccHHHHHHHHHHhH
Q 009424 429 AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~ 449 (535)
...|...|++++|.+.|+++.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 444444444444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-05 Score=62.62 Aligned_cols=116 Identities=10% Similarity=-0.052 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PV 462 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~ 462 (535)
...+..+...+...|++++|...|++..+.... +...|..+...|...|++++|+..++++.+..+.. .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 356677888888899999999999988876433 67788888888999999999999999888443221 233 56
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhH
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~ 506 (535)
++..+..++...|++++|.+.++...+..+. ......+...+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~ 123 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 7777778888999999999999999887663 334445555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.1e-05 Score=58.47 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=48.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC--CHHHHHHHH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP--NWTTFSTMA 289 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li 289 (535)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence 344445555555555555555555555442 2234444455555555555555555555554321 22 344555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHh
Q 009424 290 TMYIKM-GQVEKAEESLRRVES 310 (535)
Q Consensus 290 ~~~~~~-g~~~~A~~~~~~m~~ 310 (535)
..|.+. |++++|.+.|+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 555555 555555555555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0003 Score=68.80 Aligned_cols=198 Identities=8% Similarity=-0.058 Sum_probs=132.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC
Q 009424 218 MTLYMKIKEYDEVESMVSEMKEKGIRLDV----------------YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN 281 (535)
Q Consensus 218 i~~~~~~g~~~~a~~~~~~m~~~g~~pd~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 281 (535)
...+.+.|++++|++.|....+....... ..+..+...|.+.|++++|.+.+..+.+..+-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999987533221 23678899999999999999999988753222222
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----ccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--
Q 009424 282 WT----TFSTMATMYIKMGQVEKAEESLRRVESR----ITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-- 350 (535)
Q Consensus 282 ~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-- 350 (535)
.. +.+.+-..+...|+.+.|..+++..... +..+. ..++..+...|...|++++|..++++........
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2333334445578899999988886442 22222 2356677888888888888888888776532221
Q ss_pred --ch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcC--C-CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 351 --TN-LGYHAMISSLARIGDIEGMEKIFEEWLSVK--S-SYD---PRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 351 --~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.. ..+..++..|...|++++|..+++...... . .|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 467777788888888888888887765431 1 111 23455566666777888888777766653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=61.51 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINF 467 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~l 467 (535)
.+..+...+.+.|++++|...|++..+..+. +...|..+...+...|++++|+..|+++. .+.| +...+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al------~l~P~~~~~~~~l 91 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHAR------MLDPKDIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHH
Confidence 4556677889999999999999999987554 78899999999999999999999999999 3456 45677788
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
..++...|++++|...+++.++..+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 889999999999999999999876643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00017 Score=58.29 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..+...+...|++++|...++...+.... +...+..+..+|...|++++|...|++..+
T Consensus 68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 68 HRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444433222 344444445555555555555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00016 Score=58.51 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
..+..+...+...|++++|...+++..+.. |+ ...+..+...|...|++++|...+++..+.... +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 344555555566666666666666655433 23 455556666666666666666666666654322 45556666
Q ss_pred HHHHHccccHHHHHHHHHHhH
Q 009424 429 AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~ 449 (535)
...|...|++++|.+.|++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666666
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=7.2e-05 Score=74.21 Aligned_cols=116 Identities=8% Similarity=-0.010 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|.+.+++..+..+. +...+..+..+|.+.|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555555554322 2344555555566666666666666655554432 4555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHH--HHccccHHHHHHHHH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEG--HIRERRILEALSCLK 446 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 446 (535)
+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554322 23334444333 555566666666665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.3e-05 Score=61.05 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 344 (535)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|+..+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555566666666666666655432111 01 1234444555555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.8e-05 Score=61.60 Aligned_cols=131 Identities=10% Similarity=0.067 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-c--h--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-T--N--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PR 388 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~--~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~ 388 (535)
++..+...|...|++++|+..+++........ + . ..+..+...+...|++++|...+++..+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45666677778888888888887765532111 1 1 35666667777777777777777766543211 11 33
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC--CC--C-CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEG--GK--P-NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++..+...+...|++++|...+++..+.. .. + ....+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556666667777777777766655320 00 0 12345555566666666777766666655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00037 Score=70.46 Aligned_cols=172 Identities=9% Similarity=-0.011 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC----------HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-
Q 009424 333 KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD----------IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG- 401 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 401 (535)
.++|++.++++....+.. ...|+.--..+...|+ ++++.+.++.+.+..++ +..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~-~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchh-HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 466777777777754442 2345544444555555 88888889888887766 7888888888888888
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc-cHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhc----
Q 009424 402 -NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER-RILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEE---- 474 (535)
Q Consensus 402 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~---- 474 (535)
+++++++.++++.+.+.+ |..+|+.-...+.+.| .++++++.++++. + ..| |...|.....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I----~--~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI----T--RNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT----T--TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHH----H--HCCCCccHHHHHHHHHHhhcccc
Confidence 669999999999987766 8888888888888888 8899999999988 3 344 556677666665553
Q ss_pred ----------CChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 475 ----------SDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 475 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+.++++.+.+++.++..|.....|..+.-.+.+.++..+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457889999999999898888888888888876666443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00021 Score=56.30 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN---STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+..+..+|.+.|++++|...|++..+..+. + ...+..+...+...|++++|.+.|+++.
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444444444432211 1 2333344444444444444444444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00051 Score=53.94 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC--HHHHHHHHHHHHH
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD--PRIANLMMSWYVK 399 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 399 (535)
...+...|++++|+..|+......+.... ..+..+..++...|++++|...++.+.+..+... ...+..+..+|.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444555555555555555554333221 2344455555566666666666665555433211 3445555666666
Q ss_pred cCChhHHHHHHHHHHHc
Q 009424 400 EGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~ 416 (535)
.|++++|...|+++.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=60.99 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+|..+..+|.+.|++++|+..+++..+..+. +...|..+..+|...|++++|+..|++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 345555666666666666666666666654333 45566666666666666666666666666
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00022 Score=70.41 Aligned_cols=145 Identities=11% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISS 361 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 361 (535)
...|..+...|.+.|++++|...|++..+.. |+...+ .-+...+ .... ....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~~-------~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SESF-------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHHH-------HHHHHHHHHHH
Confidence 3456666777777777777777777765532 221100 0000000 0000 12456677777
Q ss_pred HHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 362 LARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
+.+.|++++|...++++++..+. +...|..+..+|...|++++|...|++..+.... +...|..+...+.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766544 6677777777888888888888888877765433 556677777777777777766
Q ss_pred H-HHHHHhH
Q 009424 442 L-SCLKGAF 449 (535)
Q Consensus 442 ~-~~~~~m~ 449 (535)
. .+++.|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 5 3455555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00011 Score=60.76 Aligned_cols=115 Identities=9% Similarity=0.007 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC---------CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEE--------GG---------KPNSTSWETLAEGHIRERRILEALSCLKGAFAA 451 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (535)
.+......+.+.|++++|...|++..+. .. .-+...|..+..+|.+.|++++|+..++++.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~- 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK- 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 3444455555566666666665555442 00 11356788899999999999999999999993
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh-hHHHHHHHhHhhh
Q 009424 452 EGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK-DYMSLIGLTDEAV 509 (535)
Q Consensus 452 ~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~L~~~y~~~~ 509 (535)
+.| +...|..+..++...|++++|...+++.++..+.... ....|..+.....
T Consensus 92 -----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 92 -----REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp -----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred -----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 345 4568888888999999999999999999999888763 5555555554333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-05 Score=61.05 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=45.5
Q ss_pred cCCHhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKS--SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
.|++++|...|++.++.+. +.+...+..+...|.+.|++++|...|++..+..+. +...+..+...|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 3555566666666555431 113445555566666666666666666666554333 4555555666666666666666
Q ss_pred HHHHHhH
Q 009424 443 SCLKGAF 449 (535)
Q Consensus 443 ~~~~~m~ 449 (535)
+.|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.83 E-value=7.6e-05 Score=74.02 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcccc
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 437 (535)
+...+.+.|++++|.+.+++..+..+. +...|..+..+|.+.|++++|++.+++..+.... +...|..+...|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 334556789999999999999887654 6889999999999999999999999999987544 68889999999999999
Q ss_pred HHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHH--HHhcCChhhHHHHHH
Q 009424 438 ILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKA--CEEESDMGSKEAFVA 485 (535)
Q Consensus 438 ~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a--~~~~g~~~~a~~~~~ 485 (535)
+++|++.|+++.+ +.|+. ..+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVK------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH------HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999993 33432 344444444 778899999999998
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00065 Score=55.12 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCCC-CHhHH----HHHHHHHHccccHHHHHHHHHHhHHhcc-CCCC
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEE-----GGKP-NSTSW----ETLAEGHIRERRILEALSCLKGAFAAEG-AKSW 457 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~g~ 457 (535)
.|..+..++.+.|++++|+..+++..+. .+.| +...| .....++...|++++|++.|++..+..+ +.|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 7777778888888888888888887764 1134 45667 7888888888999999999988885432 4455
Q ss_pred CCCHHHHH
Q 009424 458 RPKPVNVI 465 (535)
Q Consensus 458 ~p~~~~~~ 465 (535)
.+......
T Consensus 139 ~~~~~~~~ 146 (159)
T 2hr2_A 139 TPGKERMM 146 (159)
T ss_dssp CTTHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00047 Score=67.96 Aligned_cols=158 Identities=7% Similarity=-0.037 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+++++|++.|+...+.. +-+...+..+...+.+.|+++.|...|++..+...-.++ + .-+...+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~-----------~~~~~~~- 311 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG---L-----------SEKESKA- 311 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---C-----------CHHHHHH-
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc---C-----------ChHHHHH-
Confidence 34555655554333321 114567888888999999999999999998863211111 0 0000000
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
... -....|..+..+|.+.|++++|+..|++.....+. +...|..+..+|...|++++|...|+++++..+.
T Consensus 312 ~~~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 312 SES-------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 000 01223444445555555555555555555544332 2344555555556666666666666665554332
Q ss_pred CCHHHHHHHHHHHHHcCChhHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
+...+..+..++.+.|+.+++.
T Consensus 384 -~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 -NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0016 Score=65.77 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK----------KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
..++|++.++.+....+ -+...|+.--..+.+.|+ ++++++.++.+....++ +...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34567777777766432 133456655555555555 78888888888876555 3356766667777778
Q ss_pred --CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--------
Q 009424 367 --DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG-NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE-------- 435 (535)
Q Consensus 367 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 435 (535)
+++++.+.++.+.+..+. +...|+.-...+.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668888888888887766 7788888777778888 788888888888877665 788888777666552
Q ss_pred ------ccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhh
Q 009424 436 ------RRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 436 ------g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~ 479 (535)
+.++++++.++++. .+.| |...|...-..+...+..++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai------~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAF------FTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHH------HHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHH------hhCCCCccHHHHHHHHHhcCCCccc
Confidence 67899999999999 3455 45677777777777666444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00049 Score=65.61 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..|..+..+|.+.|++++|...++++++..+. +...+..+..+|.+.|++++|...|++..+.... +...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45667777777778888888888877765543 5677777777888888888888888877765433 566666666666
Q ss_pred HccccHHHHHH
Q 009424 433 IRERRILEALS 443 (535)
Q Consensus 433 ~~~g~~~~A~~ 443 (535)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=4.8e-05 Score=59.09 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
.|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 1123333334444444444444444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=58.73 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=70.0
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN----------FDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+.+.+++|.+.++..++..+. +...|..+..++...++ +++|+..|++..+..+. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 344555666666665555544 55555555555555544 45888888888886555 6778888888888
Q ss_pred cc-----------ccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH
Q 009424 434 RE-----------RRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC 471 (535)
Q Consensus 434 ~~-----------g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~ 471 (535)
.. |++++|++.|+++. .+.|+...|...+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl------~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAV------DEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHH------HHCTTCHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHH------HhCCCCHHHHHHHHHH
Confidence 76 48999999999999 5788887777666544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00031 Score=67.03 Aligned_cols=83 Identities=7% Similarity=-0.003 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHH
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMS 500 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 500 (535)
...|..+...|.+.|++++|++.++++. .+.| +...|..+..++...|++++|.+.+++..+..+.....+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al------~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEAL------EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHH------HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445555555555666666666666655 2233 23445555555555566666666666655555544444445
Q ss_pred HHHHhHhhhh
Q 009424 501 LIGLTDEAVA 510 (535)
Q Consensus 501 L~~~y~~~~~ 510 (535)
|..++...++
T Consensus 347 l~~~~~~~~~ 356 (370)
T 1ihg_A 347 LLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=69.34 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=83.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 318 VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
..|..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 347777788888899999999999887743 22211 122233333332221 23678888899
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH--HhcC
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC--EEES 475 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~--~~~g 475 (535)
.+.|++++|+..+++..+.... +...|..+..+|...|++++|++.|+++. .+.|+.......+..+ ...+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al------~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQ------KYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTT------C---------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999886543 78889999999999999999999999998 4566554333333322 3446
Q ss_pred ChhhHHHHHHHHhcCCCCC
Q 009424 476 DMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~ 494 (535)
..+.+...+..+.+..+.+
T Consensus 314 ~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHhhCCCCCC
Confidence 6778888888888766554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=69.49 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISS 361 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 361 (535)
...+..+...|.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 457888888899999999999999998663 344321 223344444433221 1357788888
Q ss_pred HHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccccHHH
Q 009424 362 LARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG-HIRERRILE 440 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~ 440 (535)
+.+.|++++|...++..++.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988876543 6788888899999999999999999888764332 44455555444 234566778
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
+.++|..|.
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 888888887
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0012 Score=53.57 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhc-------CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSV-------KSSYDPRIA----NLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|..+..++.+.|++++|...+++.++. .+. +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666667777777777777777776664 432 45566 7778888888888888888888765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0007 Score=51.42 Aligned_cols=93 Identities=12% Similarity=-0.012 Sum_probs=74.2
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-----
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK----- 494 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----- 494 (535)
+...|..+...+...|++++|++.|+++.+ ..| +...|..+..++...|++++|.+.+++.++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 556788888899999999999999999983 344 56678888888999999999999999999988776
Q ss_pred -hhhHHHHHHHhHhhhhcccccCCCC
Q 009424 495 -EKDYMSLIGLTDEAVAENNKKNDED 519 (535)
Q Consensus 495 -~~~~~~L~~~y~~~~~~~~~~~~i~ 519 (535)
...+..+...|...|...+....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4466677777877777666555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00049 Score=52.30 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-----
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----- 460 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----- 460 (535)
+...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|++.++++. .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL------RYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TSCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HhCCCccHHH
Confidence 4456667777778888888888888887775443 67777778888888888888888888888 34555
Q ss_pred --HHHHHHHHHHHHhcCChhhHHHHH
Q 009424 461 --PVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 461 --~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
...+..+..++...|+.+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 334444445555555555554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0005 Score=52.90 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+...++...+..+. +...+..+...|...|++++|...|++..+.... +...|..+...|...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556655554433 5566666666666777777777777666664333 45566666666677777777777776666
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0021 Score=63.34 Aligned_cols=125 Identities=8% Similarity=-0.091 Sum_probs=85.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-----CCCC-ch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhc-----CCC-CC-HHHHH
Q 009424 326 LYGSVGKKEEVYRVWNLYRSV-----FPGV-TN-LGYHAMISSLARIGDIEGMEKIFEEWLSV-----KSS-YD-PRIAN 391 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~-----~~~~-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~ 391 (535)
.+...|++++|+.++++.... |+.. +. .+++.+..+|...|++++|..++++.++. |.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 2222 12 57788888888888888888888776532 221 22 35677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH-----cCCC-CC-HhHHHHHHHHHHccccHHHHHHHHHHhHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIE-----EGGK-PN-STSWETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++...+.+++|..+|+.+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887653 2322 11 23345566677778888888888888873
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0018 Score=63.85 Aligned_cols=125 Identities=10% Similarity=-0.029 Sum_probs=93.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhc---ccCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCch--hhHH
Q 009424 291 MYIKMGQVEKAEESLRRVESR---ITGRD----RVPYHYLLSLYGSVGKKEEVYRVWNLYRS-----VFPGVTN--LGYH 356 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~--~~~~ 356 (535)
.+...|++++|..++++..+. -..++ ..+++.+...|...|++++|+.++++... .|+..+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887543 12232 33788889999999999999999988754 3444333 6788
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHh-----cCCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLS-----VKSS-YD-PRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++...|.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2332 11 33456677788888999999999999876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0037 Score=49.91 Aligned_cols=109 Identities=6% Similarity=-0.108 Sum_probs=56.5
Q ss_pred CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHhHHH
Q 009424 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS----QGSTEKME 266 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~ 266 (535)
++++|.+.|++..+.| +.... +-..|...+.+++|++.|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666555555 22223 4444444445555666665555554 44444555555544 55555566
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 009424 267 GVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESR 311 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 311 (535)
+.|++..+. -+...+..|..+|.. .++.++|...|++..+.
T Consensus 82 ~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555542 244455555555555 55555555555555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0029 Score=50.50 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=59.9
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHH----cCCHhHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVR----ARMRGNA 195 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 195 (535)
+++++|.+.|....+.| .+... +-.+|...+.+++|.+.|++..+. .+...+..|-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45666777777776665 11111 344444444555555555544332 345555555555555 5566666
Q ss_pred HHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 009424 196 ELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVESMVSEMKEKG 241 (535)
Q Consensus 196 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 241 (535)
.+.|++..+.| +..++..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666655554 44555555555555 555666666665555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0032 Score=45.54 Aligned_cols=62 Identities=15% Similarity=0.315 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.+..+...+...|++++|...+++..+..+. +...+..+...|.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3344444445555555555555555443322 3444555555555555555555555555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=48.99 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+...+..+...|.+.|++++|+..|++..+..+. +...|..+...|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666777777777777777776665433 45566667777777777777777777666
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0017 Score=47.06 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=63.9
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHH
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYM 499 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 499 (535)
+...|..+...+...|++++|++.|++..+ ..| +...+..+..++...|++++|.+.+++..+..+.....+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 345677788888889999999999999883 234 4567777888888999999999999999888777666777
Q ss_pred HHHHHhHh
Q 009424 500 SLIGLTDE 507 (535)
Q Consensus 500 ~L~~~y~~ 507 (535)
.+..+|..
T Consensus 82 ~l~~~~~~ 89 (91)
T 1na3_A 82 NLGNAKQK 89 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777744
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0046 Score=47.29 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 336 VYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 336 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
|+..|++.....+. +...+..+...+...|++++|...++..++..+. +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443222 2244555555566666666666666665554432 455566666666666666666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0001 Score=69.91 Aligned_cols=396 Identities=12% Similarity=0.092 Sum_probs=223.9
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
....|..|-++..+.+... +|++.|-+ .-|+..|.-++.++.+.|.+++-+..+....+.. -++.+-+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~-eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVK-EAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCT-TTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTTHH
T ss_pred CccHHHHHHHHHHccCchH-HHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccHHH
Confidence 4557888888888887777 77664432 1255556677888888888887777776655543 33455567
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--------------------CC
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG--------------------YA 208 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~ 208 (535)
|+-+|++.+++.+-++++. .||+.-...+-+-|...|.++.|.-+|..+.... -.
T Consensus 122 Li~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888877665433322 2555555666677777777777777766553211 01
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM 288 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 288 (535)
-++.||-.+-.+|...+.+.-|.-.--.+.-.. | -...++..|-..|-+++-+.+++.-.. .-......|+-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 267789999899998888876655443333221 1 123456677788888888888877662 224567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCC-------CcchHHHHHHHHHhcCCHHHHHHHH-------------HHH-----
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGR-------DRVPYHYLLSLYGSVGKKEEVYRVW-------------NLY----- 343 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~-------~~~~~~~li~~~~~~g~~~~a~~~~-------------~~m----- 343 (535)
.-.|+|- +.++-.+-++..-.+--.| ....|.-++-.|.+-.+++.|.... .++
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc
Confidence 7778775 3333333333221111111 2445677777777777766653211 111
Q ss_pred --------HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHh----------cCCCCCHHHHHHHHHHHHHcCChhH
Q 009424 344 --------RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS----------VKSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 344 --------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
......-.+...+-++.++...=+...+.++|...-. ....-+..+-.++-+.|....+++.
T Consensus 349 N~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp CSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 0000111111234445554444444444444443210 0011244555677777777777654
Q ss_pred HH------------HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 406 AE------------AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 406 A~------------~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
-+ .+-+++.+. +-...-..-...|.++++|++++++.++ .++ |.-.+.....
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk-------Dkl------ykDAietAa~ 492 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK-------DSL------YKDAMQYASE 492 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST-------TCC------TTGGGTTTTT
T ss_pred HHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh-------ccc------HHHHHHHHHH
Confidence 32 223333332 1122223334557788888888765442 223 3334445677
Q ss_pred cCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 474 ESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+|+.+-++++++..++.|-. ...-.+|...|
T Consensus 493 S~~~elaeeLL~yFv~~g~~-EcF~a~LytCY 523 (624)
T 3lvg_A 493 SKDTELAEELLQWFLQEEKR-ECFGACLFTCY 523 (624)
T ss_dssp CCCTTHHHHHHHHHHHHCST-HHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHcCch-HHHHHHHHHHh
Confidence 88888888888888876532 22445666666
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00092 Score=54.10 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=79.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH----------HHHHHHHHHhHHhccCCCCCCC-HHHHHH
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI----------LEALSCLKGAFAAEGAKSWRPK-PVNVIN 466 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ 466 (535)
.+.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|+++. .+.|+ ...|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL------~ldP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL------LIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH------HHCTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH------HhCcCcHHHHHH
Confidence 4567789999999999987665 888999888888888764 59999999999 46675 468888
Q ss_pred HHHHHHhcC-----------ChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 467 FFKACEEES-----------DMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 467 ll~a~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+-.+|...| ++++|.+.|++.++.++... .|..-+++
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~ 133 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Confidence 888888764 89999999999999888754 44333333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.017 Score=53.73 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=84.7
Q ss_pred cCCCcchHHHHHHHHHh--cC---CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh---cC--C---HhhHHHHHHHHH
Q 009424 313 TGRDRVPYHYLLSLYGS--VG---KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR---IG--D---IEGMEKIFEEWL 379 (535)
Q Consensus 313 ~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~g--~---~~~a~~~~~~~~ 379 (535)
.+.+...|...+++... .+ ...+|+.+|++..+..|.-. ..|..+.-++.. .+ . .......+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a-~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT-YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 34556666666655432 22 24677777777777544321 223322222221 01 0 111111111111
Q ss_pred h-cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCC
Q 009424 380 S-VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWR 458 (535)
Q Consensus 380 ~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~ 458 (535)
. .....++.+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|+++. .+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al------rL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF------NLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcC
Confidence 1 1123467777777777777788888888888888864 677777777788888888888888888888 456
Q ss_pred CCHHHHH
Q 009424 459 PKPVNVI 465 (535)
Q Consensus 459 p~~~~~~ 465 (535)
|...||.
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 7776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.031 Score=59.38 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=26.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556666666554432 34455666666666666666666666655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0038 Score=46.51 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 239 (535)
+...|..+...|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666655543 22344555566666666666666666655543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0094 Score=43.94 Aligned_cols=56 Identities=32% Similarity=0.381 Sum_probs=32.1
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPR-IANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
..+...|++++|...++.+.+..+. +.. .+..+..+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666665554332 344 5555666666666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.031 Score=52.02 Aligned_cols=134 Identities=11% Similarity=-0.012 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHHc-----cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh---hC-----C---HhhHHHH
Q 009424 102 RSLTKWELCRVVKELRKF-----RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK---VH-----G---VASAEDF 165 (535)
Q Consensus 102 ~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~---~g-----~---~~~A~~~ 165 (535)
.+.+...|...+++.... ..+.+|+.+|+++++.. +-....+..+.-+|.. .+ . +..+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 444666677777665432 33577888888888876 2333444433333321 00 0 0111111
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 166 FLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 166 f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
...+...+.+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++..+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11111112344455544444444455555555555555543 44444444444455555555555555554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0018 Score=48.07 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=38.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNST-SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...+.+.|++++|...|++..+.... +.. .|..+...|...|++++|++.|+++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566677777777777777765433 455 67777777777777777777777777
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.041 Score=40.09 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 386 DPRIANLMMSWYVKEGN---FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|+..+..+..++...++ .++|..+|++..+..+. ++..+..+...+.+.|++++|+..|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555543333 45666666666554443 45555555566666666666666666666
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.035 Score=53.68 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHh-----cCCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLS-----VKSS-YD-PRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.+++.+..+|...|++++|..+++++++ .|.. |+ ..+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4556666666666666666666665542 1211 12 23456666667777777777766666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.03 Score=54.15 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=60.9
Q ss_pred CCHhhHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCC-CCC-HhHHHHHHHH
Q 009424 366 GDIEGMEKIFEEWLSV---KSSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIE-----EGG-KPN-STSWETLAEG 431 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~ 431 (535)
|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+ .|. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4666666666665532 12222 35778889999999999999999988764 232 222 4568888899
Q ss_pred HHccccHHHHHHHHHHhHH
Q 009424 432 HIRERRILEALSCLKGAFA 450 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~ 450 (535)
|...|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999988873
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.14 Score=54.26 Aligned_cols=47 Identities=19% Similarity=0.044 Sum_probs=26.5
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKM 202 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 202 (535)
....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344556666666655544 24455666666666666666666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.059 Score=52.13 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSV-----KSS-YD-PRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+++.+..+|...|++++|..++++++.. |.. |+ ..+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444445555544444443321 111 11 2334445555555555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.042 Score=43.91 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccccHHHHHHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEG---NFDKAEAFFNSIIEEGGKP--NSTSWETLAEGHIRERRILEALSCL 445 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 445 (535)
+++-|.+..+.+. ++..+...+..++++.+ +++++..+|+...+.+ .| +...+-.+.-+|.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444333333 34444444555555544 3335555555554432 11 2333334444455555555555555
Q ss_pred HHhH
Q 009424 446 KGAF 449 (535)
Q Consensus 446 ~~m~ 449 (535)
+.+.
T Consensus 95 ~~lL 98 (152)
T 1pc2_A 95 RGLL 98 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.51 Score=38.68 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 371 (535)
..++|+++.|.++.+.+ .+...|..+-......|+++-|.+.|..... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666666554 3455666666666666666666666665532 34444555556666555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
.++-+.....| -++.-...+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 55544443333 12333344445566666666554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.44 Score=36.72 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=81.9
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
.-.|.++++.++..+..+ ..+..-+|.+|--....-+-+-..++++.+ |--.|.. ..|++...
T Consensus 18 ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDis----------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDLD----------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCGG----------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHH---hhhcCcH----------hhhcHHHH
Confidence 446777788888777775 234455555554444444545455555544 2223332 22333333
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
+..+-.+ ..+...+...++.+...|.-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++.+.-++
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333322 11334455667777777777777777777543 34556777777777888888888877777777776
Q ss_pred CCC
Q 009424 417 GGK 419 (535)
Q Consensus 417 ~~~ 419 (535)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.06 Score=52.10 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=64.7
Q ss_pred hcCCHhhHHHHHHHHHhcC---CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCC-CCC-HhHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVK---SSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIE-----EGG-KPN-STSWETLA 429 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li 429 (535)
+.|++++|..++++.++.. +.|+ ..+++.+..+|...|++++|+.++++..+ .|. .|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3456666666666665421 1122 35678888888889999999998887763 222 122 45578888
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHH
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~ 464 (535)
..|...|++++|+.+++++.+.. ..-+-||....
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~-~~~lG~~Hp~~ 412 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIM-RVTHGREHSLI 412 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHHTCTTSHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH-HHhcCCCChHH
Confidence 88899999999998888877322 22234554433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.1 Score=38.00 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=62.8
Q ss_pred CCHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 420 PNSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 420 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
.|...+..+..++...++ .++|..+++++. .+.|+. ..+..+-..+...|++++|...|+++.+..+. +
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL------~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL------QLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-N 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-T
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------HHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 467788888888865554 799999999999 456755 45666667889999999999999999999888 5
Q ss_pred hhHHHHHHHhHh
Q 009424 496 KDYMSLIGLTDE 507 (535)
Q Consensus 496 ~~~~~L~~~y~~ 507 (535)
.....+.+...+
T Consensus 77 ~~~~~i~~~I~~ 88 (93)
T 3bee_A 77 LDRVTIIESINK 88 (93)
T ss_dssp CCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 556666665544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.16 Score=40.55 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCCCCC-C-HHHHHHHHHHHHhcCCh
Q 009424 403 FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKSWRP-K-PVNVINFFKACEEESDM 477 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g~~p-~-~~~~~~ll~a~~~~g~~ 477 (535)
+..+++-|.+..+.|. ++..+.-.+..++++.+ +.++++.++++.. +.. .| + ...+-.+--++.+.|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll----~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL----PKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH----HHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hcC-CccchHHHHHHHHHHHHHccCH
Confidence 4556677777666555 68888888899999987 7779999999999 332 35 2 34455555688999999
Q ss_pred hhHHHHHHHHhcCCCCChhh
Q 009424 478 GSKEAFVALLRQPGYRKEKD 497 (535)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~ 497 (535)
++|++.++.+++..|.+...
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999887653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.21 Score=37.06 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEG------GKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-+..+...+.+.|+++.|...|+...+.- -.+....+..+..+|.+.|++++|+.+++++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444455555555555555555444310 11234445555555555555555555555555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.65 E-value=1.5 Score=35.88 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=60.6
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 229 (535)
.+....+|+++.|.++.+.+ .+...|..|-....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34455666666666666554 2566677777777777777777777766433 3445555555666655
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 230 a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
-.++-+.....|- ++....++.-.|+++++.+++.+..
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5555444444431 3334444555666666666665443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.28 Score=36.38 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=61.1
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhH
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK--SWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDY 498 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 498 (535)
+..-+-.|...+.+.|+++.|..+|+.+.+..+.. .-.+....+..+..++.+.|+++.|...++++.+..|......
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44555678888999999999999999998432111 1123456788888999999999999999999999888876643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.28 Score=43.75 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhc-----CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCC
Q 009424 354 GYHAMISSLARI-----GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE-GNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 354 ~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~ 418 (535)
.|..+...|.+. |+.++|.+.|++.++.++.-+..++....+.+++. |+.+++.+.+++.....+
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 444444444442 55555555555555544332344445555555552 555555555555555433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.39 Score=42.86 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=55.8
Q ss_pred HhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-CC
Q 009424 262 TEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIK-----MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV-GK 332 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~ 332 (535)
...|+..+++..+ +.|+ ...|..|...|.+ -|+.++|.+.|++..+.++.-+..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3455666666654 3555 4567777777777 377788888887776643322355666666766664 77
Q ss_pred HHHHHHHHHHHHhhCCC
Q 009424 333 KEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~ 349 (535)
.+++.+.+++.....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777776555
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.12 E-value=4.3 Score=39.20 Aligned_cols=187 Identities=11% Similarity=0.064 Sum_probs=84.6
Q ss_pred CCHhHHHHHHHHHHHC-----CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH----hcC
Q 009424 190 RMRGNAELLIDKMRDK-----GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK-GIRLDVYSYNIWLSSC----GSQ 259 (535)
Q Consensus 190 g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~pd~~~~~~ll~~~----~~~ 259 (535)
|++++|++.+-.+.+. +..-.......++..|...|+++...+.+..+.+. |..+... ..+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 5677777766555432 12222344566777777777777776666555432 3222222 2222222 122
Q ss_pred CCHhH--HHHHHHHhHh--CCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-----cchHHHHHHHH
Q 009424 260 GSTEK--MEGVFELMKV--DKAVNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-----RVPYHYLLSLY 327 (535)
Q Consensus 260 g~~~~--a~~~~~~~~~--~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~ 327 (535)
...+. -..+.+.... .+.+-.. ......|...|...|++.+|.+++..+...-...+ ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1111111110 0001111 11234455566666666666666666643222222 12344445556
Q ss_pred HhcCCHHHHHHHHHHHHh---hCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 328 GSVGKKEEVYRVWNLYRS---VFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~---~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
...+++..|..+++++.. ....++. ..+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 666666666666665532 1111111 23444455555555655555555444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.6 Score=35.77 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH---HHHHHHHhHHhccCCCCCC-CHHHHH-HHHHHHHhcCC
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE---ALSCLKGAFAAEGAKSWRP-KPVNVI-NFFKACEEESD 476 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~g~~p-~~~~~~-~ll~a~~~~g~ 476 (535)
.+..+++-|.+....|. |+..+--.+..++++..+..+ ++.++.+.. ..+ .| +..-+. .+.-++.+.|+
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~----~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL----PKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT----TTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hcC-CcchHHHHHHHHHHHHHHhhh
Confidence 34445555555544444 566666666677776665444 777777776 332 23 223333 33346777888
Q ss_pred hhhHHHHHHHHhcCCCCChh
Q 009424 477 MGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~ 496 (535)
++.|++.++.+++..|.+..
T Consensus 90 Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHH
Confidence 88888888888877776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.77 Score=36.23 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009424 366 GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 419 (535)
+++++|+++|+.+++.+-.. ..+|.....--.+.|++..|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665543232 555555555556666666666666666665555
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.76 E-value=1.8 Score=33.40 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=88.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009424 222 MKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKA 301 (535)
Q Consensus 222 ~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (535)
.-.|..++..++..+..+.. +..-||-+|--....-+-+...++++.+-+-. | ...||++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHH
Confidence 34577777777777776653 45556666655555566666666666665422 2 2345555555
Q ss_pred HHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhc
Q 009424 302 EESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 381 (535)
...+-.+ ..+.......++.....|+-++-.+++..+... ..|+......+..||.+.|+..++.+++.++-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5555443 234555566677777788888877777775332 3334445567778888888888888888888777
Q ss_pred CCC
Q 009424 382 KSS 384 (535)
Q Consensus 382 ~~~ 384 (535)
|.+
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.93 Score=35.78 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 401 GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 401 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+++++|.++|+.+...+-+- ...|.....-=.++|+...|.+++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 45555555555554431111 4445444455555566666666666655
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.27 E-value=0.88 Score=32.91 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+.-+..+-++.+. ...+.|++....+.++||.+..|+..|.++++-+....-....+|..+++-.
T Consensus 25 D~~e~rrglN~l~----~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLV----GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHT----TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 4556667777777 7788899999999999999999999999999888744323344677766654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.75 E-value=7.4 Score=37.55 Aligned_cols=55 Identities=5% Similarity=0.052 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC
Q 009424 225 KEYDEVESMVSEMKEK-----GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN 279 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~-----g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 279 (535)
|++++|++.+-.+.+. +..........++..|...|+++...+.+..+.+..|..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql 89 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL 89 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh
Confidence 6778888777666542 233455667778888888888888877777776655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.82 E-value=0.78 Score=35.13 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=42.4
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHcC-CCCCHhHHHHHHHHHHccccHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK---AEAFFNSIIEEG-GKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
.+..+++-+......|. ++..+-..+..++.+..+..+ ++.+++.+...+ +.-.....-.+.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444444333 455555555556666555444 555555555432 1012233334455666667777777
Q ss_pred HHHHHhH
Q 009424 443 SCLKGAF 449 (535)
Q Consensus 443 ~~~~~m~ 449 (535)
+.++.+.
T Consensus 95 ~~~~~lL 101 (126)
T 1nzn_A 95 KYVRGLL 101 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766666
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.77 E-value=2.1 Score=44.19 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=42.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+-+...|+++.|+++.++....-+. +-.+|..|...|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455678888888888888775333 57888888888888888888888888774
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.09 E-value=6.1e-05 Score=71.41 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
+|+.|..++.+.|++.+|.+.|-+ ..|...|..+|.+..+.|.+++-+..+...++..-.|.. =+.++-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHH
Confidence 455555555555555555444421 134445555666666666666655555544443222222 235556666
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------------------CCCCCHh
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE--------------------GGKPNST 423 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~ 423 (535)
+.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+... .-.-+..
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 6665544333322 234444444555555555555555444432210 0012556
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIG 503 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~ 503 (535)
||..+-.+|...+.+.-|.-.--.+. +.|| -...++.-|-..|-+++-..+++.-....--.-..++-|.=
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI-------vhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaI 271 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV-------VHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 271 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH-------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc-------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 66666666666666665544444443 2222 22334455666677777776666655322222225666666
Q ss_pred HhHh
Q 009424 504 LTDE 507 (535)
Q Consensus 504 ~y~~ 507 (535)
.|++
T Consensus 272 LYsK 275 (624)
T 3lvg_A 272 LYSK 275 (624)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6644
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.62 E-value=2.2 Score=32.72 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+.-+..+-++.+. ...+.|++....+.++||.+..|+..|.++++-+....-.....|..+++-.
T Consensus 68 D~wElrrglN~l~----~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLV----GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHT----TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 3445566667777 7788999999999999999999999999999988744323344777766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.30 E-value=21 Score=37.85 Aligned_cols=310 Identities=9% Similarity=-0.039 Sum_probs=152.2
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCc--chHHHHHHHHHhcCChhHHHHHHHHHHHcCC--C-----CCHHHHHHHHHHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHS--LPYNVMMTLYMKIKEYDEVESMVSEMKEKGI--R-----LDVYSYNIWLSSC 256 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~-----pd~~~~~~ll~~~ 256 (535)
....|+.++++.+++.....+-..+. ..=..+.-+....|..+++.+++.......- . +....-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34455666665555544331100111 1222233345556666677777666554321 0 1111122222223
Q ss_pred hcCCCH-hHHHHHHHHhHhCCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH--HHHh
Q 009424 257 GSQGST-EKMEGVFELMKVDKAVNPNWTT--FS--TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS--LYGS 329 (535)
Q Consensus 257 ~~~g~~-~~a~~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~ 329 (535)
+-.|.- +++...+..+..+ .+..+ .. +|...|.-.|+-+....++..+.+. .+......+.- ++..
T Consensus 464 a~~GS~~eev~e~L~~~L~d----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 223321 2444444444432 12221 12 2223344567777777777766542 12223333333 3446
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHH---HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYH---AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
.|+.+.+..+.+.+... ..|. .-|. ++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 78888887777777653 2222 2232 33456677788877777888877542 11232222222333446777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccH-HHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhc--CC-------
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRI-LEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEE--SD------- 476 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~--g~------- 476 (535)
.++++.+.+.+ .|.+..-..+.-|....|.. .+|+.++..+. -.+|..+-...+.+.... |.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~-------~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT-------KDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH-------TCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 77777665542 34454445555555555554 67888888888 244555544444444333 22
Q ss_pred hhhHHHHHHHHhc-CCCCChh-hHHHHHHHhHhhhhccc
Q 009424 477 MGSKEAFVALLRQ-PGYRKEK-DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 477 ~~~a~~~~~~~~~-~~~~~~~-~~~~L~~~y~~~~~~~~ 513 (535)
+...++.+..... ....+.. ....+..+...+|...-
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~ 724 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNV 724 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTE
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCce
Confidence 2223333333332 2333444 55677777777776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=1.1 Score=42.62 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh-ccCCCCCCCHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAA-EGAKSWRPKPVNV 464 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~g~~p~~~~~ 464 (535)
+...++..+...|+.++|...+..+....+- +...|..+|.+|.+.|+..+|++.|+...+. ..+.|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445677788889999999888888776444 7888999999999999999999998887632 1245888887654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.23 E-value=3.3 Score=42.75 Aligned_cols=125 Identities=16% Similarity=0.081 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCC-HhHHHHHHHHHHHCCCCcCcchH--HHHHHHHHhcC-ChhHHHHHHHHHHHc------CCCC-CHH-
Q 009424 180 GALLNAYVRARM-RGNAELLIDKMRDKGYAVHSLPY--NVMMTLYMKIK-EYDEVESMVSEMKEK------GIRL-DVY- 247 (535)
Q Consensus 180 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g-~~~~a~~~~~~m~~~------g~~p-d~~- 247 (535)
..++..+...++ .+.|.++|+++.... |...++ ..++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444444555 577899999888763 322222 22333332222 223455555554321 1111 111
Q ss_pred ---------HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 248 ---------SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 248 ---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (535)
....-.+-|...|+++.|.++-++...- .+.+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222233466789999999999998853 2556779999999999999999999999887
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.30 E-value=5.7 Score=28.65 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=58.0
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLI 199 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (535)
..-++|..|-+++...+ . ...+.-.-+..+...|++++|..+.+...- ||...|-+|-.. +.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLAY--PDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC--GGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHHH--hcccHHHHHHHH
Confidence 35678888888888776 2 333333445567788999999999988886 899999887653 677777777777
Q ss_pred HHHHHCC
Q 009424 200 DKMRDKG 206 (535)
Q Consensus 200 ~~m~~~g 206 (535)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7777776
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=2.3 Score=40.25 Aligned_cols=71 Identities=8% Similarity=0.028 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHh----CCCCCCCHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV----DKAVNPNWTTF 285 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 285 (535)
...++..+...|++++++..+..+.... +.+...+..+|.++...|+..+|.+.|+...+ +.|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445566666666776666666665543 34666666677777777777776666665442 34666666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.52 E-value=18 Score=39.76 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP----RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 430 (535)
|.-++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+..... -......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 455666666666666666666555543222121 2456666666667777777666666655322 2344555555
Q ss_pred HHHccc
Q 009424 431 GHIRER 436 (535)
Q Consensus 431 ~~~~~g 436 (535)
.++..|
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.49 E-value=5.4 Score=28.72 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=58.5
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLI 199 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (535)
..-++|..|-+++...+ . ...+.-.-+..+...|++++|..+.+...- ||...|-+|-. .+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNPW--PALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC--GGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHHHH
Confidence 35678888888888776 2 333333445567788999999999888886 99999988765 4778878887777
Q ss_pred HHHHHCC
Q 009424 200 DKMRDKG 206 (535)
Q Consensus 200 ~~m~~~g 206 (535)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7777776
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.31 E-value=5.8 Score=28.73 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+.++-++.+....+.|++.+..+.+.+|.+.+++..|.++|+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444555556666666666666666666666666666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.35 E-value=9.1 Score=30.77 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=41.4
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHccChHHHHHHHHHHHhc
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKG-GRSLTK-------WELCRVVKELRKFRRYKHALEVYDWMNNR 135 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~-g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 135 (535)
-.-++.+...+.++ .|.-+.+-+... +..|+. .++..+..++...|.+..|...|.+.++.
T Consensus 24 ~dqik~L~d~~LY~-sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 24 IDHVRDMAAAGLHS-NVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHH-HHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34566777788888 777776665443 233432 24556667888889999999999887653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.02 E-value=36 Score=37.43 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP-N--WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
|..++..+-+.+.++.+.++-....+..+-.+ + ...|..+...+...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 45555566666666666655554443211111 1 114566666666677777776666666543222 234455555
Q ss_pred HHHhcCCHHHH
Q 009424 326 LYGSVGKKEEV 336 (535)
Q Consensus 326 ~~~~~g~~~~a 336 (535)
..+..|..+.-
T Consensus 980 ~lce~~~~~~L 990 (1139)
T 4fhn_B 980 QLTKQGKINQL 990 (1139)
T ss_dssp HHHHHCCHHHH
T ss_pred HHHhCCChhhh
Confidence 55555554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.93 E-value=14 Score=28.39 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 385 YDPRIANLMMSWYVKEGNF---DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|++.+--.+..++.+..+. .+++.+++.+...+..-....+-.+.-|+.+.|++++|.++.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444445555554433 2345555555443321123344444555555555555555555555
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=82.87 E-value=6 Score=34.97 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=8.5
Q ss_pred HHHHHhhCCHhhHHHHHhh
Q 009424 150 LDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~ 168 (535)
+...+..|+.+-...+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344444555444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.55 E-value=16 Score=28.08 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCCCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCCCCC-CH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 417 GGKPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKSWRP-KP-VNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 417 ~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g~~p-~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
+..|+..+--.+..++++.. +..+++.++.+.. +.+ | .. ..+-.+.-++.+.|+++.|+++.+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~----~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY----KEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH----HHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 44566666556666776655 4567999999988 333 4 23 344455568999999999999999999999
Q ss_pred CCChh
Q 009424 492 YRKEK 496 (535)
Q Consensus 492 ~~~~~ 496 (535)
|.+..
T Consensus 109 P~N~Q 113 (134)
T 3o48_A 109 RNNKQ 113 (134)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 88766
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.72 E-value=5.8 Score=31.91 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
--+..+|.+.|+.++|+.+++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335555666666666666655543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.42 E-value=12 Score=28.84 Aligned_cols=46 Identities=11% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+..+.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444444445555666666666666666666666666666666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 535 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 4/181 (2%)
Query: 236 EMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW-TTFSTMATMYIK 294
EK + LD + +++ + +++PN +A +Y +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
G ++ A ++ RR + Y L + G E +N + P +
Sbjct: 250 QGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414
+ + + G+IE +++ + L V + + + S ++G +A + I
Sbjct: 309 NN-LANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAI 366
Query: 415 E 415
Sbjct: 367 R 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 4/168 (2%)
Query: 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVW 340
+ + + + ++A + R S ++ V + L +Y G + +
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 341 NLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE 400
+ P + Y + ++L G + E + L + ++ + NL ++
Sbjct: 261 RRAIELQPHFPDA-YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-IKREQ 318
Query: 401 GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGA 448
GN ++A + +E + + + LA ++ ++ EAL K A
Sbjct: 319 GNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.31 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.24 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.96 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.96 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.88 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.81 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.76 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.59 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.49 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.43 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.71 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.43 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.35 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.46 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.06 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.76 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.35 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.66 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.4e-20 Score=180.81 Aligned_cols=380 Identities=9% Similarity=-0.012 Sum_probs=302.6
Q ss_pred HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCC
Q 009424 113 VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARM 191 (535)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~ 191 (535)
...+.+.|++++|.+.++.+++.. +.+...+..+...|.+.|++++|...|++..+. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 344567788888888888887764 445677777778888888888888888876554 3467789999999999999
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 271 (535)
+++|+..+....+.. +.+...+..........+....+............ .+..............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence 999999999988764 33445555566666667777777777766666543 3444555566667778888888888887
Q ss_pred hHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 009424 272 MKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 351 (535)
..... +.+...+..+...+...|+.++|...+++..+..+ -+...|..+...+...|++++|+..+++.....+. +
T Consensus 161 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 236 (388)
T d1w3ba_ 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred hhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence 77532 55677888889999999999999999998876432 24557888889999999999999999998886554 3
Q ss_pred hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 352 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
...+..+...+.+.|++++|...++++.+..+. +..++..+...|...|++++|.+.++....... .+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHH
Confidence 456778889999999999999999999877654 678899999999999999999999999887644 378888999999
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhh
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAV 509 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~ 509 (535)
+...|++++|++.|+++. .+.|+ ..++..+..++...|++++|.+.+++.++..|.....|..|..+|.+.|
T Consensus 315 ~~~~~~~~~A~~~~~~al------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHT------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999998 34565 5577888889999999999999999999998887778999999986543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-19 Score=174.10 Aligned_cols=380 Identities=13% Similarity=0.023 Sum_probs=313.9
Q ss_pred HHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh
Q 009424 77 FRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK 155 (535)
Q Consensus 77 i~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~ 155 (535)
-..+.+.|+++ +|+..|+++.+. .| +...+..+...+.+.|++++|++.++.+++.. +.+...+..+...|.+
T Consensus 6 a~~~~~~G~~~-~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 6 AHREYQAGDFE-AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHH-HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHH-HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHhhh
Confidence 34567889999 999999999874 45 56778888899999999999999999999886 4567888899999999
Q ss_pred hCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 156 VHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 156 ~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
.|++++|...+...... ..+...+..........+....+........... .................+....+...+
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHH
Confidence 99999999999887654 3456666666677777777777777776665543 334555666677777888888998888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC
Q 009424 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITG 314 (535)
Q Consensus 235 ~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 314 (535)
....... +-+...+..+...+...|+++.|...++...+.. +.+...|..+...|...|++++|...|+.......
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 234 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-
Confidence 8887764 3466778888889999999999999999988642 55677899999999999999999999999876533
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
.+...+..+...+.+.|++++|+..|++..+..+. +..++..+...+...|++++|.+.++......+ .+...+..+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 312 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHH
Confidence 45567788889999999999999999999886544 346788899999999999999999999887654 3788899999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHh
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEE 473 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~ 473 (535)
..+.+.|++++|...|++..+..+. +..+|..+...|.+.|++++|++.|+++. .+.|+ ...|..+..++.+
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al------~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAI------RISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHH------TTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998875443 67789999999999999999999999999 46675 5578888888887
Q ss_pred cCC
Q 009424 474 ESD 476 (535)
Q Consensus 474 ~g~ 476 (535)
.||
T Consensus 386 ~~D 388 (388)
T d1w3ba_ 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred cCC
Confidence 775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-12 Score=120.84 Aligned_cols=272 Identities=13% Similarity=-0.027 Sum_probs=158.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHh
Q 009424 184 NAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE 263 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 263 (535)
..+.+.|++++|...|++..+.. +-+..+|..+...+...|++++|+..|.+..+.. +-+...+..+..++...|+++
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence 34455555555555555555542 2234455555555555555555555555555442 123444444555555555555
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
+|.+.++..... .|+............ ...+.......+..+...+...+|...|.+.
T Consensus 105 ~A~~~~~~~~~~---~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 105 QACEILRDWLRY---TPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHT---STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHh---ccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 555555554431 121100000000000 0000001111222334456677888888887
Q ss_pred HhhCCCC-chhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 009424 344 RSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 344 ~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 422 (535)
....+.. +...+..+...+...|++++|...++......+. +...|..+...|.+.|++++|.+.|++..+..+. +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cH
Confidence 7655443 3456777888888999999999999988876654 6788888999999999999999999998876443 67
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCC------CCCCHHHHHHHHHHHHhcCChhhHH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAFAAEGAKS------WRPKPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g------~~p~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
.+|..+...|.+.|++++|++.|+++.+..++.. .......|..+-.++...|+.+...
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888899999999999999999999884332211 1111224444545555556555444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.6e-12 Score=119.35 Aligned_cols=223 Identities=11% Similarity=0.002 Sum_probs=108.0
Q ss_pred HHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 153 IAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
+.+.|++++|...|+++.+. +.+..+|..+...|.+.|++++|...|++..+.. +-+...|..+...|...|++++|.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~ 107 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQAC 107 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccc
Confidence 44444555555555444333 2345556666666666666666666666655432 223455555556666666666666
Q ss_pred HHHHHHHHcCCCCCHHH----------------HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc
Q 009424 232 SMVSEMKEKGIRLDVYS----------------YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295 (535)
Q Consensus 232 ~~~~~m~~~g~~pd~~~----------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 295 (535)
+.+....... |+... ....+..+...+.+.++...+....+...-..+..++..+...+...
T Consensus 108 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 185 (323)
T d1fcha_ 108 EILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185 (323)
T ss_dssp HHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred cchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 6666655432 11110 00011111222334445555544443222223444555555555555
Q ss_pred CCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHH
Q 009424 296 GQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIF 375 (535)
Q Consensus 296 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 375 (535)
|++++|...|++.....+ -+...|..+...|...|++++|++.|++..+..+. +...+..+..+|.+.|++++|...|
T Consensus 186 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 263 (323)
T d1fcha_ 186 GEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHF 263 (323)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555543221 12334555555555555555555555555543322 1234445555555555555555555
Q ss_pred HHHHh
Q 009424 376 EEWLS 380 (535)
Q Consensus 376 ~~~~~ 380 (535)
++.++
T Consensus 264 ~~al~ 268 (323)
T d1fcha_ 264 LEALN 268 (323)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=2.5e-09 Score=98.00 Aligned_cols=204 Identities=12% Similarity=0.001 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
..++|..+|++..+...+.+...|...+..+...|+.++|..+|+++....+......|...+..+.+.|+++.|+++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677777777765444445556777777777888888888888887765444434567777777888888888888888
Q ss_pred HHHhcCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC
Q 009424 377 EWLSVKSSYDPRIANLMMSW-YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK 455 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 455 (535)
.+.+.++. +...|...... +...|+.+.|..+|+.+.+..+. +...|...+..+...|+.+.|..+|++..+ ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~---~~ 233 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT---SG 233 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---SS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hC
Confidence 87766544 33344333333 33357788888888888775333 577788888888888888888888888773 22
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh--hHHHHHHHh
Q 009424 456 SWRPK--PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK--DYMSLIGLT 505 (535)
Q Consensus 456 g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~L~~~y 505 (535)
...|+ ...|...+..-...|+.+.+..+.+++.+.-+.... ....+++-|
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ry 287 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRY 287 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHHHHH
Confidence 33443 346777777667778888888888877665433322 344455555
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.9e-09 Score=98.92 Aligned_cols=214 Identities=8% Similarity=0.037 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 283 TTFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHYLLSLYGSVG-KKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
..++.+...+.+.+..++|+.+++++.+. .| +...|+....++...| ++++|+..++......+. +..+|.....
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 35566666677778888888888888764 34 3446777777777665 478888888888776554 3367777778
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc----
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER---- 436 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 436 (535)
.+.+.|++++|...++.+++..+. +...|..+...+.+.|++++|+..|+.+.+.++. +...|+.+...+.+.+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 888888888888888888876655 6778888888888888888888888888876554 6677776655554433
Q ss_pred --cHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh--hHHHHHHHhHhh
Q 009424 437 --RILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK--DYMSLIGLTDEA 508 (535)
Q Consensus 437 --~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~L~~~y~~~ 508 (535)
.+++|++.+.++. .+.|+ ...|..+...+.. ...+++.+.++...+..+.+.. .+..+.+.|...
T Consensus 199 ~~~~~~ai~~~~~al------~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 199 RAVLEREVQYTLEMI------KLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHH------HHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHH------HhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 3678888888887 34453 4455555444443 4467777888777766555433 566777777554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=4.5e-08 Score=90.91 Aligned_cols=298 Identities=10% Similarity=-0.001 Sum_probs=189.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCcC------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHH
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYAVH------SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLD----VYSYNI 251 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd----~~~~~~ 251 (535)
...+...|++++|+++|++..+.. |+ ...++.+...|...|++++|+..|++..+... .++ ..++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 345567788888888887776642 22 23556666777788888888888877655311 011 234455
Q ss_pred HHHHHhcCCCHhHHHHHHHHhHhC---CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC----CcchHH
Q 009424 252 WLSSCGSQGSTEKMEGVFELMKVD---KAVN--P-NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR----DRVPYH 321 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~ 321 (535)
+...+...|++..+...+...... .... + ....+..+...+...|+++.+...+.......... ....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 566677788888888777765421 1111 1 12345566677888899999888888876542221 223445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC----Cch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC---HHHHHH
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRSVFPG----VTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD---PRIANL 392 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 392 (535)
.+...+...++..++...+.+....... ++. ..+......+...|+.+.|...+....+.....+ ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5566677788888888888766542211 111 3455666777888999999999888765543322 344566
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH----cCCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC----CHHH
Q 009424 393 MMSWYVKEGNFDKAEAFFNSIIE----EGGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP----KPVN 463 (535)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p----~~~~ 463 (535)
+...|...|++++|...+++... .+..|+ ...+..+...|.+.|++++|.+.++++.+..+..|... ....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 78889999999999999988763 233333 45677788889999999999999998874332333221 1223
Q ss_pred HHHHHHHHHhcCChhhHHH
Q 009424 464 VINFFKACEEESDMGSKEA 482 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~ 482 (535)
+..++..+...+..+++.+
T Consensus 337 ~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhcCCChHHHH
Confidence 4445555555565555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=8.2e-09 Score=94.39 Aligned_cols=187 Identities=12% Similarity=0.080 Sum_probs=142.8
Q ss_pred CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009424 261 STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (535)
..+++..+|+...+. ..+.+...|...+..+.+.|+.+.|..+|+++.+.........|...+..+.+.|+.++|.++|
T Consensus 79 ~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 457788888888742 3455667888888888899999999999998876433333447888888888999999999999
Q ss_pred HHHHhhCCCCchhhHHHHHH-HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-C
Q 009424 341 NLYRSVFPGVTNLGYHAMIS-SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG-G 418 (535)
Q Consensus 341 ~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 418 (535)
+++....+.... .|..... -+...|+.+.|..+|+.+.+..+. ++..|...++.+.+.|+++.|+.+|++..... .
T Consensus 158 ~~al~~~~~~~~-~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDARTRHH-VYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTCCTH-HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCCcHH-HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998876555443 2323222 334568899999999998876444 68889999999999999999999999988753 3
Q ss_pred CCC--HhHHHHHHHHHHccccHHHHHHHHHHhHH
Q 009424 419 KPN--STSWETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 419 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
.|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 45788888887888999999999998874
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=4.7e-08 Score=90.80 Aligned_cols=274 Identities=9% Similarity=0.019 Sum_probs=196.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHH
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLD----VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTM 288 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 288 (535)
....+...|++++|++++++..+.....+ ...+..+..++...|++++|...++...+...-.++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 44567889999999999999987632212 245677788899999999999999987642111122 3355667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc----cCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch----hhHHH
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRI----TGRD---RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN----LGYHA 357 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ 357 (535)
...|...|++..+...+....... .... ...+..+...+...|+++.+...+............ ..+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 788899999999999998865421 1111 124455667888999999999999988775443322 34556
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCC--C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HhHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSS--Y----DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN---STSWETL 428 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 428 (535)
....+...++...+...+......... . ....+..+...+...|++++|...++.........+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 667778889999988888766542211 1 123456677788899999999999988765433222 3456667
Q ss_pred HHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 429 AEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
...+...|++++|.+.++++.......+..|+. ..+..+-.++...|++++|.+.+++.++.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888999999999999999987433334555544 35666778899999999999999987654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.6e-08 Score=91.15 Aligned_cols=187 Identities=6% Similarity=0.002 Sum_probs=81.5
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHH
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG-QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKE 334 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (535)
+.+.+..++|+++++.+++-. +-+...|+.....+...| ++++|+..++...+..+ .+..+|..+...+.+.|+++
T Consensus 53 ~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~l~~~~ 129 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPS 129 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCT
T ss_pred HHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHhhccHH
Confidence 333344444444444444321 223333444444444333 24444444444433211 12334444444444444444
Q ss_pred HHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC------hhHHHH
Q 009424 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN------FDKAEA 408 (535)
Q Consensus 335 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~ 408 (535)
+|++.++++.+..+. +...|..+...+.+.|++++|.+.++.+++..+. +...|+.+...+.+.+. +++|..
T Consensus 130 eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 130 QELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp THHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence 444444444443222 2234444444555555555555555555444433 44444444444444333 345555
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 409 FFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 409 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+....+..+. +...|..+...+...| .+++.+.++...
T Consensus 208 ~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 208 YTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred HHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 55555554333 4555555544443332 345555555554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=7.5e-09 Score=95.94 Aligned_cols=230 Identities=10% Similarity=-0.051 Sum_probs=138.5
Q ss_pred CCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcccCCCcchHHH-HHHHHHhcCCHHHH
Q 009424 260 GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG--QVEKAEESLRRVESRITGRDRVPYHY-LLSLYGSVGKKEEV 336 (535)
Q Consensus 260 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~a 336 (535)
|.+++|..+++...+.. +.+...|..+..++...+ ++++|...++++.+... ++...|.. ....+...+..++|
T Consensus 87 ~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 34566666676666432 445666666666665554 36677777777655322 23334433 33555566777777
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
+..++......+. +...|..+...+.+.|++++|...+....+.. +. ...+...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL----LK-ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH----HH-HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH----HH-HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 7777776665443 33566667777777777766654443322211 11 112333445566677777777776664
Q ss_pred CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 417 GGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 417 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
.. ++...+..+...+...|+.++|++.+.+.. ...| +...+..+..++...|++++|.+.++++++..|...
T Consensus 238 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~ 310 (334)
T d1dcea1 238 RA-EPLFRCELSVEKSTVLQSELESCKELQELE------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310 (334)
T ss_dssp CC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred Cc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHH------hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence 33 245556666677777788888888888777 2334 334566666677788888888888888887766544
Q ss_pred hhHHHHHHHh
Q 009424 496 KDYMSLIGLT 505 (535)
Q Consensus 496 ~~~~~L~~~y 505 (535)
..|..|...+
T Consensus 311 ~y~~~L~~~~ 320 (334)
T d1dcea1 311 AYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666555
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=4.1e-08 Score=87.04 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
+|..+...|.+.|++++|...|++..+..+ -+..+|..+..+|.+.|++++|+..|+++....+. +..++..+...+.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 444445555566666666666665554221 23345555556666666666666666665554333 1234555555566
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRIL 439 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 439 (535)
..|++++|...++...+..+. +......+...+.+.+..+.+..+........ ++...++. +..+.. .+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhhH-HHHHHHHHHHHHHHH
Confidence 666666666666665554432 33333333333444444444444444433321 11112211 111111 11122
Q ss_pred HHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 440 EALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
.+...+.... ...|+ ..+|..+-..+...|++++|.+.+++.++..|.+-.
T Consensus 193 ~~~~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 193 RLKADATDNT------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244 (259)
T ss_dssp HHHHHCCSHH------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHhh------hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 2222222111 11121 124445555666667777777777777666655433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=4.1e-09 Score=97.74 Aligned_cols=259 Identities=7% Similarity=-0.071 Sum_probs=170.1
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCc-chHHHHHHH----------HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHS-LPYNVMMTL----------YMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~----------~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
+.+..++|++++++..+.. |+. ..|+..-.. +...|.+++|+.+++...+.. +-+...|..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 3344577888888777653 443 334332222 223345678888888887764 23556666665555
Q ss_pred hcCC--CHhHHHHHHHHhHhCCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCH
Q 009424 257 GSQG--STEKMEGVFELMKVDKAVNPNWTTFSTM-ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333 (535)
Q Consensus 257 ~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (535)
...+ ++++|...+..+.+.. +++...+... ...+...|..++|+..++...+..+ -+...|+.+...+.+.|++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCC
T ss_pred HHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCH
Confidence 5544 4778888888877532 4456665543 3566677888888888887766433 3566777777888888887
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
++|...+....... |. .......+...+..+++...+.......+. +...+..+...+...|+.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77755554433321 11 123334456667777888888877665543 4556666777788888999999988877
Q ss_pred HHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHH
Q 009424 414 IEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVI 465 (535)
Q Consensus 414 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~ 465 (535)
....+. +...|..+...|...|++++|++.++++. .+.|+...|.
T Consensus 269 ~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai------~ldP~~~~y~ 313 (334)
T d1dcea1 269 EPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLK------AVDPMRAAYL 313 (334)
T ss_dssp CTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHH------HHCGGGHHHH
T ss_pred HhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHCcccHHHH
Confidence 764332 56677888888999999999999999999 3567655443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=4.6e-08 Score=86.65 Aligned_cols=95 Identities=9% Similarity=-0.102 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 292 (535)
+|..+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+...|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHH
Confidence 44445555556666666666666655543 2245555556666666666666666666655421 23344555555666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 009424 293 IKMGQVEKAEESLRRVES 310 (535)
Q Consensus 293 ~~~g~~~~A~~~~~~m~~ 310 (535)
...|++++|...|+...+
T Consensus 116 ~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 666666666666665554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=2.5e-06 Score=76.55 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=122.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccC----C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---c--hhhHHHH
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITG----R-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV---T--NLGYHAM 358 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~--~~~~~~l 358 (535)
...|...|++++|.+.|.+..+-... + -..+|..+..+|.+.|++++|++.+++........ . ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44577888888888888877542111 1 12467777888888888888888888765422111 1 1345555
Q ss_pred HHHHH-hcCCHhhHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH------hHHH
Q 009424 359 ISSLA-RIGDIEGMEKIFEEWLSV----KSSY-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS------TSWE 426 (535)
Q Consensus 359 l~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~ 426 (535)
...|. ..|++++|.+.+.+..+. +..+ -..++..+...|.+.|++++|...|++.......... ..|.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55664 468899999888877542 1111 1345677888899999999999999988764322111 1233
Q ss_pred HHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC------HHHHHHHHHHHHh--cCChhhHHHHHHHHhcC
Q 009424 427 TLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK------PVNVINFFKACEE--ESDMGSKEAFVALLRQP 490 (535)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~------~~~~~~ll~a~~~--~g~~~~a~~~~~~~~~~ 490 (535)
..+..+...|+++.|.+.+++.. .+.|+ ......++.++.. .+.+++|...|+.+.+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~------~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQ------SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG------CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHH------HhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 44556667889999999999888 23332 2244556666544 23356666666554443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3.9e-06 Score=63.52 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 439 (535)
..+...|++++|...|.+.++..+. +...|..+..+|.+.|++++|+..++...+.++. +...|..+...+...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHH
Confidence 3444555555555555555544433 4455555555555555555555555555554333 4555555555555555555
Q ss_pred HHHHHHHHhH
Q 009424 440 EALSCLKGAF 449 (535)
Q Consensus 440 ~A~~~~~~m~ 449 (535)
+|+..|++..
T Consensus 89 ~A~~~~~~a~ 98 (117)
T d1elwa_ 89 EAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.1e-05 Score=67.11 Aligned_cols=20 Identities=15% Similarity=-0.190 Sum_probs=8.6
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+.+.|++++|.+.+..+.
T Consensus 128 ~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 128 FMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 33444444444444444444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.6e-06 Score=63.76 Aligned_cols=106 Identities=9% Similarity=-0.080 Sum_probs=90.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHH
Q 009424 393 MMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACE 472 (535)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~ 472 (535)
-...+.+.|++++|+.+|++..+..+. +...|..+..+|...|++++|++.+.++.+ .. +.+...|..+..++.
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~-p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD----LK-PDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHH----hc-cchhhHHHHHHHHHH
Confidence 356788899999999999999987665 788999999999999999999999999993 22 336678888889999
Q ss_pred hcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
..|++++|...+++.++..+.....+..+-++
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999988877666665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=8.1e-06 Score=73.13 Aligned_cols=61 Identities=11% Similarity=-0.058 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch------hhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN------LGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
+..+...|...|++++|+..|+++....+.... ..+...+..+...|+++.|...++...+
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444455555555555555555554443222111 0122233334445555555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.4e-05 Score=66.49 Aligned_cols=123 Identities=8% Similarity=-0.039 Sum_probs=57.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009424 221 YMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300 (535)
Q Consensus 221 ~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (535)
+...|++++|++.|.++ .+|+..+|..+-.++...|++++|.+.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHH
Confidence 34444555555444432 13344444444555555555555555555544321 3334445555555555555555
Q ss_pred HHHHHHHHHhccc------------CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 009424 301 AEESLRRVESRIT------------GRD---RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 301 A~~~~~~m~~~g~------------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (535)
|...|++...... ... ..++..+..++.+.|++++|.+.|.......+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5555554432110 000 112333445566666666666666665554444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.31 E-value=0.00049 Score=61.71 Aligned_cols=211 Identities=15% Similarity=0.105 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHH
Q 009424 103 SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGAL 182 (535)
Q Consensus 103 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~l 182 (535)
.||..-...+.+-|.+.|.++.|..+|..+. .+..++..|.+.++++.|.+++.+. .+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----------d~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----------CHHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHH
Confidence 4566666677777778888888888776432 2345566777777777777777655 356688888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGST 262 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 262 (535)
...+.+......| .+.......+......++..|-..|.+++...++...... -..+...++-++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence 8877777665443 2222233334455567778888888888888888766533 2456667777888777754 2
Q ss_pred hHHHHHHHHhHhCCCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHH
Q 009424 263 EKMEGVFELMKVDKAVNPNW--------TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKE 334 (535)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (535)
++-.+.+.... ..+.+.. ..|.-++-.|.+.|.+++|..+.-. ..++..-....+..+.+..+++
T Consensus 149 ~kl~e~l~~~s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 149 QKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp HHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHhcc--ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChH
Confidence 33333332221 1111110 0134455556666666665544322 1233334444555556655555
Q ss_pred HHHHHHHH
Q 009424 335 EVYRVWNL 342 (535)
Q Consensus 335 ~a~~~~~~ 342 (535)
...++...
T Consensus 222 ~~~~~i~~ 229 (336)
T d1b89a_ 222 LYYRAIQF 229 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=2e-06 Score=72.38 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=85.9
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLA 429 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 429 (535)
|+...+......+.+.|++++|...|..+++..+. ++..|..+..+|.+.|++++|+..|++..+..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 44555667788999999999999999999887755 7889999999999999999999999999875443 678899999
Q ss_pred HHHHccccHHHHHHHHHHhHH
Q 009424 430 EGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~ 450 (535)
.+|.+.|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999884
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.1e-05 Score=62.08 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=60.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
..|.+.|++++|+..|++.....+. +...|..+...|...|++++|...|+.+++..+. +...|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHH
Confidence 3455667777777777776665443 3356666667777777777777777777665544 5566777777777777777
Q ss_pred HHHHHHHHHHHcC
Q 009424 405 KAEAFFNSIIEEG 417 (535)
Q Consensus 405 ~A~~~~~~m~~~~ 417 (535)
+|...|++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 7777777776653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.1e-05 Score=64.90 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.....|.+.|++++|...|+++++..+. +...|..+..+|...|++++|...|++..+..+. +...|..+..+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 3455677888888888888888887655 7788888888888888888888888888876544 6678888888888888
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
++++|++.++++.
T Consensus 93 ~~~eA~~~~~~a~ 105 (159)
T d1a17a_ 93 KFRAALRDYETVV 105 (159)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888888888
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=0.0015 Score=58.48 Aligned_cols=174 Identities=15% Similarity=0.107 Sum_probs=101.2
Q ss_pred HhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH
Q 009424 143 ASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222 (535)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 222 (535)
......+.+.|.+.|.++.|..++..+.+ |..++..+.+.+++..|.+++.+. + +..+|..+...+.
T Consensus 14 ~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 14 NAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCFACV 80 (336)
T ss_dssp ---------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHHHHHH
Confidence 33444556667788888888888877765 667777778888888887777643 2 4567888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (535)
+.....-+ .+.......+......++..|-..|.++....+++..... -..+...++-++..|++.+. ++-.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~~-~kl~ 152 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKP-QKMR 152 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCH-HHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhCh-HHHH
Confidence 77665443 2222333445566677888888888888888888876532 25667778888888887643 3333
Q ss_pred HHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 303 ESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
+.+... .+..-...++..|-+.+.++++.-++..+
T Consensus 153 e~l~~~------s~~y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 153 EHLELF------WSRVNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHH------STTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHhc------cccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 333322 12233344556666666666655555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=1.3e-05 Score=67.24 Aligned_cols=100 Identities=9% Similarity=-0.061 Sum_probs=86.6
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
|+...+...-..|.+.|++++|+..|.+.....|. +...|..+..+|.+.|++++|...++.+++..+. +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 55566667788899999999999999999887554 4578889999999999999999999999876544 678899999
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.+|.+.|++++|...|++..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988763
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3.1e-06 Score=64.43 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=41.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc---ccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHH
Q 009424 393 MMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE---RRILEALSCLKGAFAAEGAKSWRPKP-VNVINFF 468 (535)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll 468 (535)
+++.+...+++++|++.|++....++. +..++..+..++.+. +++++|+++++++. ...-.|+. ..|..+.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l----~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL----PKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT----TTSCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH----hccCCchHHHHHHHHH
Confidence 334444444444444444444443332 444444444444432 22334555555444 21111111 1333444
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 469 KACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
.+|.+.|++++|.+.++++++..|...
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 444455555555555555554444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=1.6e-05 Score=59.46 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.....+.+.|++++|...+++.++..+. ++..|..+..++.+.|++++|+..|++..+..+. +...|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 3455666777788888777777776654 6777777777788888888888888877775444 6777777778888888
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
++++|++.+++..
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888777653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=8.3e-06 Score=61.95 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHcCCCCC-HhHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF---DKAEAFFNSIIEEGGKPN-STSWETLAE 430 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~-~~~~~~li~ 430 (535)
...+++.+...+++++|++.|+...+.++. ++.++..+..++.+.++. ++|+.+|+++...+..|+ ..+|..+..
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 356888999999999999999999988765 888888899999876654 569999999887654444 347888999
Q ss_pred HHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHH
Q 009424 431 GHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFK 469 (535)
Q Consensus 431 ~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~ 469 (535)
+|.+.|++++|++.|+++. .+.|+..-...+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL------~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLL------QTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHH------HhCcCCHHHHHHHH
Confidence 9999999999999999999 46787665544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.96 E-value=0.0045 Score=53.56 Aligned_cols=93 Identities=11% Similarity=-0.021 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDVYSYNI 251 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~~~~~ 251 (535)
+..+..|-..+.+.+++++|++.|++..+.| |..++..|-..|.. ..+...|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455555555666677777777777766666 55555555555554 345666666666665554 2222222
Q ss_pred HHHHHh----cCCCHhHHHHHHHHhHh
Q 009424 252 WLSSCG----SQGSTEKMEGVFELMKV 274 (535)
Q Consensus 252 ll~~~~----~~g~~~~a~~~~~~~~~ 274 (535)
+...+. ...+.+.|...++...+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~ 102 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACD 102 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhh
Confidence 222222 23455566666665553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.96 E-value=5.6e-05 Score=56.33 Aligned_cols=89 Identities=9% Similarity=-0.093 Sum_probs=58.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN 402 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 402 (535)
+...+.+.|++++|+..|++.....+. +...|..+..++.+.|++++|...++..++..+. +...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 344556667777777777776665443 3356666666777777777777777776665544 56667777777777777
Q ss_pred hhHHHHHHHHH
Q 009424 403 FDKAEAFFNSI 413 (535)
Q Consensus 403 ~~~A~~~~~~m 413 (535)
+++|.+.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00033 Score=56.44 Aligned_cols=77 Identities=12% Similarity=0.060 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
+|+.+..+|.+.|++++|...++..++..+. ++..+..+..+|...|++++|...|+...+..+. |......+-...
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4556667777788888888888877776544 6777777778888888888888888887775433 444444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00064 Score=54.70 Aligned_cols=80 Identities=9% Similarity=-0.049 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV 398 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 398 (535)
+|+.+..+|.+.|++++|+..++......|. +...+..+..++...|++++|...|+.+.+..+. +..+...+-...-
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4666777888888888888888888886554 4467778888888889999999999888876544 5555555544443
Q ss_pred Hc
Q 009424 399 KE 400 (535)
Q Consensus 399 ~~ 400 (535)
+.
T Consensus 142 ~~ 143 (170)
T d1p5qa1 142 RI 143 (170)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00014 Score=55.63 Aligned_cols=92 Identities=11% Similarity=0.259 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC-----HhHHHHHHH
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-PN-----STSWETLAE 430 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-----~~~~~~li~ 430 (535)
.+...+...|++++|...|.+.++..+. +..++..+..+|.+.|++++|...++++.+.... +. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777666544 5666777777777777777777777776652111 01 134555666
Q ss_pred HHHccccHHHHHHHHHHhH
Q 009424 431 GHIRERRILEALSCLKGAF 449 (535)
Q Consensus 431 ~~~~~g~~~~A~~~~~~m~ 449 (535)
.+...+++++|++.|++..
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 6666777777777777766
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.76 E-value=0.00043 Score=54.65 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+|+.+..+|.+.|++++|++.++...+.++. +..+|..+..+|...|++++|+..|++..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666777777777777766665433 56666677777777777777777777766
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00011 Score=56.26 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCC-CCCC-HHHHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKS-WRPK-PVNVINF 467 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g-~~p~-~~~~~~l 467 (535)
+-.+...|.+.|++++|+..|++..+.++. +...|..+..+|.+.|++++|++.++++.+..+... ..++ ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 345677899999999999999999997665 789999999999999999999999999984322211 0011 2366667
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
-..+...+++++|.+.+++.+.....++.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~~~~ 114 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence 77888899999999999998876555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.69 E-value=0.013 Score=50.56 Aligned_cols=126 Identities=12% Similarity=-0.004 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCH
Q 009424 175 DRRVYGALLNAYVR----ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 175 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
|...+-.|-..|.. ..+...|...+..-...+ +...+..+...+.. ..+.+.|...++...+.|..
T Consensus 33 ~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--- 106 (265)
T d1ouva_ 33 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--- 106 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---
T ss_pred CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---
Confidence 44444444444444 456677777777776665 34444444444433 34667788888877776632
Q ss_pred HHHHHHHHHHh----cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 009424 247 YSYNIWLSSCG----SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVES 310 (535)
Q Consensus 247 ~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 310 (535)
.....+...+. .......+...+..... ..+...+..|...|.. ..+...+...++...+
T Consensus 107 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~ 174 (265)
T d1ouva_ 107 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD 174 (265)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhcccc
Confidence 22222222222 23445566666666554 3456666666666654 2344455555554433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=0.00063 Score=55.14 Aligned_cols=124 Identities=13% Similarity=0.056 Sum_probs=83.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
......|++++|.+.|.+.......+-.. .....+-+...-..+... ....+..+...+.+.|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~----------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLD----------DLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG----------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccc----------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 45567788888888888776643322100 000000111111111111 2456778899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhc-cCCCCCCCHHH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAE-GAKSWRPKPVN 463 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~g~~p~~~~ 463 (535)
+|...++++.+..+. +...|..++.+|.+.|+.++|++.|+++.+.. .+.|+.|...+
T Consensus 85 ~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999987665 88999999999999999999999999985221 14589998765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.00016 Score=56.61 Aligned_cols=113 Identities=10% Similarity=-0.008 Sum_probs=68.2
Q ss_pred CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----------cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 366 GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK----------EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
+.+++|.+.++..++..+. ++.++..+..+|.. .+.+++|+..|++..+.++. +..+|..+...|...
T Consensus 11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence 3344444444444444332 34444444444332 23346677777777775544 667777777777654
Q ss_pred c-----------cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 009424 436 R-----------RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 436 g-----------~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
| .+++|.+.|+++. .+.|+...+...+..+ ..+.+++.++.+.|+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal------~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAV------DEQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHH------HHCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred ccchhhHHHHHHhHHHhhhhhhccc------ccCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 4 4688999999999 5778887777666554 355666666665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.64 E-value=0.001 Score=52.28 Aligned_cols=123 Identities=6% Similarity=-0.025 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
.+......+.+.|++.+|...|.+..+.- +....+ ...........+ ...+|..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~~-----------~~~~~~~~~~~~-------~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEW-----------DDQILLDKKKNI-------EISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTC-----------CCHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhhh-----------hhHHHHHhhhhH-------HHHHHhhHHHHHH
Confidence 44555566777788888888777765421 111000 000000000000 1135677888889
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
+.|++++|.+.+..+++..+. +...|..+..+|...|++++|...|+...+..+. |......+
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred Hhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 999999999999998887654 7889999999999999999999999998886443 45444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=3.5e-05 Score=74.63 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..+..+...+.+.|+.+.|...+....+.. ...++..+.+.+...|++++|...|++..+..+. +...|+.+...|
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 344455555566666666665555443321 1234555666666666666666666666664333 455666666666
Q ss_pred HccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 433 IRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
...|+..+|+..|.+.. ... .|-..++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral----~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSI----AVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHH----SSS-BCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----hCC-CCCHHHHHHHHHHHHH
Confidence 66666666666666666 222 3444555555555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.59 E-value=7.7e-05 Score=65.00 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=84.6
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
.+.|++++|...+++.++..+. |...+..+...|+..|++++|.+.|+...+..+. +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 3568899999999988887766 8888899999999999999999999988875332 3445555555554444444433
Q ss_pred HHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 443 SCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 443 ~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
.-..... ..+ .|+ ...+......+...|+.++|.+.++++.+..+....
T Consensus 85 ~~~~~~~----~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 85 QGAATAK----VLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp TSCCCEE----CCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHhhhhh----ccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 3222211 111 222 233334455677889999999999998877665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.49 E-value=0.004 Score=49.66 Aligned_cols=94 Identities=9% Similarity=0.092 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.|..+..+|.+.|++++|...++..++..+. +...|..+..+|...|++++|...|++..+..+. +...+..+-....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3555666777788888888888877776544 6777777777888888888888888887765432 4444444444433
Q ss_pred ccccHH-HHHHHHHHhH
Q 009424 434 RERRIL-EALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~-~A~~~~~~m~ 449 (535)
+.+... ...++|..|.
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 333322 2334444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.48 E-value=0.0016 Score=52.18 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
.|..+..++.+.|++++|+..+..+++..+. ++..|..+..+|.+.|++++|...|++..+..+. +...+..+...
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4555666677777777777777777665543 5666777777777777777777777777765333 44444444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.0014 Score=52.55 Aligned_cols=81 Identities=5% Similarity=-0.103 Sum_probs=61.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 317 RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
...|..+..+|.+.|++++|+..+.+..+..+. +...|..+..++...|++++|...|+.+++..+. +..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345666778888899999999999998886544 3467888899999999999999999998887654 56666655554
Q ss_pred HHH
Q 009424 397 YVK 399 (535)
Q Consensus 397 ~~~ 399 (535)
..+
T Consensus 155 ~~~ 157 (169)
T d1ihga1 155 KQK 157 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.00072 Score=54.80 Aligned_cols=120 Identities=11% Similarity=0.020 Sum_probs=70.4
Q ss_pred HHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHh
Q 009424 114 KELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRG 193 (535)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~ 193 (535)
......|++++|.+.|...+..-...... ....-..+...-..+.. .....+..+...+.+.|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~--~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVE--DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHH--HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCch
Confidence 46677788888888888887742001000 00000001111111111 23345666777777777777
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE-----KGIRLDVYS 248 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~pd~~~ 248 (535)
+|+..++++.+.. +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 7777777776653 34566777777777777777777777777643 467766544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.37 E-value=0.0075 Score=47.96 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV 398 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 398 (535)
.|+.+..+|.+.|++++|+..++......+. +...|..+..++...|++++|...|..+++..+. +..+...+-.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4555677788889999999999988886544 4467778888899999999999999988876543 5555555544444
Q ss_pred HcC
Q 009424 399 KEG 401 (535)
Q Consensus 399 ~~g 401 (535)
+.+
T Consensus 144 ~~~ 146 (168)
T d1kt1a1 144 KAK 146 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=3.5e-05 Score=74.59 Aligned_cols=113 Identities=12% Similarity=-0.052 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYL 323 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l 323 (535)
+...+..+-..+.+.|+.+.|...+....+. . ...++..+.+.+...|++++|...|++..+. .|+ ...|+.+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~L 192 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQL 192 (497)
T ss_dssp ------------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHH
Confidence 3444555555566666666666655554421 1 1234555666666677777777777666553 333 3466666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
...|...|+..+|+..|.+.....+ |-..++..|...+.+
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHH
Confidence 6666677777777776666655422 222445555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.10 E-value=0.00041 Score=60.23 Aligned_cols=21 Identities=0% Similarity=-0.285 Sum_probs=12.4
Q ss_pred HHHHHccccHHHHHHHHHHhH
Q 009424 429 AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~ 449 (535)
...+.+.|+.++|.++++++.
T Consensus 106 a~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 106 FNLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 344555566666666666665
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.81 E-value=0.0045 Score=47.89 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=38.9
Q ss_pred HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----------ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 368 IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG-----------NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 368 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
+++|...++++++..+. +...|..+..+|...| .+++|.+.|++..+. .|+...|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence 34555555555554433 4455555555554433 357788888887774 45544444333322
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
..|.+++.+..
T Consensus 130 --~ka~~~~~e~~ 140 (145)
T d1zu2a1 130 --AKAPQLHAEAY 140 (145)
T ss_dssp --HTHHHHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 34555555554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.71 E-value=0.015 Score=45.38 Aligned_cols=26 Identities=19% Similarity=-0.086 Sum_probs=14.1
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhHH
Q 009424 425 WETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
|..+..+|...|++++|++.|+++.+
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.43 E-value=0.012 Score=46.01 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
++.+..+|...|++++|...|++..
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.024 Score=39.81 Aligned_cols=74 Identities=8% Similarity=-0.054 Sum_probs=40.9
Q ss_pred HHHHHHHccccHHHHHHHHHHhHHhccCC-CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHH
Q 009424 427 TLAEGHIRERRILEALSCLKGAFAAEGAK-SWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMS 500 (535)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~-g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 500 (535)
.+...+.+.|++++|+..|+++.+..+.. ...++ ..++..+..++.+.|++++|...++++++..|.....++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 44555666666666666666665322111 11222 2355556666666666666666666666666665554433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.46 E-value=0.27 Score=35.41 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=84.7
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHH
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (535)
+.-.|.++++.++..+..+ +.+..-||.+|--....-+-+-..++++.+-+ -.|.. ..++...
T Consensus 12 ~ildG~ve~Gveii~k~~~----ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDls----------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc----cCCccccceeeeecccccchHHHHHHHHHHhh---hcCch----------hhhcHHH
Confidence 3456778888888887775 33555566666555555555555555555422 22322 1222333
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 336 VYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 336 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
....+-.+ ..+...+...++.+.+.|.-++-.+++..+.+ .-++++...-.+..+|.+.|...++-+++.+.-+
T Consensus 75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33322222 11334456667777778888887788777666 3456777777778888888888888888777777
Q ss_pred cCCC
Q 009424 416 EGGK 419 (535)
Q Consensus 416 ~~~~ 419 (535)
.|++
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 6654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.42 E-value=0.27 Score=36.57 Aligned_cols=109 Identities=6% Similarity=-0.102 Sum_probs=55.8
Q ss_pred CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHhHHH
Q 009424 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS----QGSTEKME 266 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~ 266 (535)
++++|++.|++..+.| +...+..|.. ....+.++|++++.+..+.| +......|-..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5566777777766665 3344433332 22345666666666666655 33333333333332 34556666
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 009424 267 GVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESR 311 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 311 (535)
++|+...+. -+......|-.+|.. ..+.++|.++|+...+.
T Consensus 80 ~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 80 QYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 666666542 133344444444443 23555565555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.077 Score=36.97 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccC-----CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 009424 286 STMATMYIKMGQVEKAEESLRRVESRITG-----RD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV 346 (535)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 346 (535)
-.+...+.+.|+++.|...|++..+.... ++ ..+++.+..+|.+.|++++|+..++++.+.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34455555666666666666555432111 01 123444555555555555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.06 E-value=0.63 Score=34.38 Aligned_cols=78 Identities=8% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----ccc
Q 009424 366 GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERR 437 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 437 (535)
.+.++|.+.+++..+.| ++.....|-..|.. ..+.++|.++|++..+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555544 34444444444443 234556666666665543 33333334333332 235
Q ss_pred HHHHHHHHHHhH
Q 009424 438 ILEALSCLKGAF 449 (535)
Q Consensus 438 ~~~A~~~~~~m~ 449 (535)
.++|.++|++..
T Consensus 111 ~~~A~~~~~~Aa 122 (133)
T d1klxa_ 111 EKQAVKTFEKAC 122 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=2.5 Score=38.70 Aligned_cols=51 Identities=4% Similarity=-0.272 Sum_probs=24.7
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
..+...|+..+|...|..+. .. . +......+.....+.|.++.|.....+.
T Consensus 389 ~~L~~~g~~~~A~~e~~~l~----~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 389 RELMYWNLDNTARSEWANLV----KS-K--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----TT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCCchHHHHHHHHHH----hC-C--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 33445555555555555554 22 1 2333444444555555555555554443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.15 E-value=0.46 Score=32.36 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+.-++.+-++.+. ...+.|++....+.++||.+..|+..|.++++-+....-.....|..+++-.
T Consensus 21 D~we~rrgmN~l~----~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLV----GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHT----TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4556667777777 7788999999999999999999999999999888743322344776666544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.68 Score=33.48 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 386 DPRIANLMMSWYVKEGN---FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+.+--....++.+..+ +++++.+|++....+..-....+-.+.-+|.+.|++++|.+.++.+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444332 33555555555543211112344445555555666666666666555
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.52 E-value=2.6 Score=30.20 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=86.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009424 222 MKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKA 301 (535)
Q Consensus 222 ~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (535)
.-.|..++..++..+..... +..-||-+|--....-+-+...++++.+-+-. | ..+|+++...
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F----D----------ls~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhc----C----------chhhhcHHHH
Confidence 44567777777777776542 44555666655555666666666666665422 1 2234555444
Q ss_pred HHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhc
Q 009424 302 EESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 381 (535)
...+-.+ ..+..-+...++...+.|+-++-.++++.+.+. ..++......+..+|.+.|...++.+++.++-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4444332 234445556667777778877777777775553 3444445567778888888888888888877777
Q ss_pred CCC
Q 009424 382 KSS 384 (535)
Q Consensus 382 ~~~ 384 (535)
|.+
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.35 E-value=1.4 Score=31.85 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=54.5
Q ss_pred CCCCHhHHHHHHHHHHcc---ccHHHHHHHHHHhHHhccCCCCCC-CH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 009424 418 GKPNSTSWETLAEGHIRE---RRILEALSCLKGAFAAEGAKSWRP-KP-VNVINFFKACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 418 ~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~g~~p-~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
..|...|--....++++. .+.++++.++++.. .. .| +. ..+-.+--+|.+.|++++|++.++.+++..|
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~----~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY----KE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH----HH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHH----hc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345566655666666644 56789999999998 32 34 33 3555666789999999999999999999998
Q ss_pred CChh
Q 009424 493 RKEK 496 (535)
Q Consensus 493 ~~~~ 496 (535)
....
T Consensus 105 ~n~q 108 (124)
T d2pqrb1 105 NNKQ 108 (124)
T ss_dssp TCHH
T ss_pred CcHH
Confidence 8766
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.66 E-value=3.2 Score=28.12 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..+-++.+....+.|++.+..+-+.+|.+.+++..|.++|+..+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444455556666666666666666666666666665554
|