Citrus Sinensis ID: 009502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
MDVTSSGAEVVPEKIEDKKDGGLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNLFSRVSGWMSSEKREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFDKLAEAPDVRSLSFAIKDLEAKLGPFKEDTVNRYSGEGKVNEEKKINEVKPDGEGTINGEVNISEEGKINATDKVNEKEKISNKSKPNEGGKGNEQEKDSDGDVKEGKFTEGKNNGRKVSEEDRIHDEQNVNREGTIDGGKINNETRVNEEQKANEPGKVTKGEKVSEEGKANDTGKVNKEVRASEGRKVSEERNINEGKTNGVRVNEEEKINAEGKVNGRD
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccEEEEcccccccHHHHcHHHHHHHHHHcccEEcccccccccHHccccHHHHHHHHcccccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHcccccccccccccHHcHHHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccc
cccccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHcccHHHHHHHHHHccccEEEccccccccEEcHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccc
mdvtssgaevvpekiedkkdggltfhcnlsdTEIVHKIAQEFLpglasacvdnttgdifrtpgsvaVGIRTEMVEYLTKRSEtfvaesviledpdqaevsdhpydiISDFVDEFALSKRNLFSrvsgwmssekreDRIDDFLQEMEISGFWSINRREAIAHILLKnvdfknefhcnmkfnseKELNEHMLHcgfismicpnegcnakfsaghlekhdsvcpfkiipceqkcpdtlmrrdmdRHCITVCQMKlancpfyavgcqstipqcmiqqhrhdDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFDklaeapdvrslSFAIKDLEaklgpfkedtvnrysgegkvneekkinevkpdgegtingevniseegkinatdkvnekekisnkskpneggkgneqekdsdgdvkegkftegknngrkvseedrihdeqnvnregtidggkinnetrvneeqkanepgkvtkgekvseegkandtgkvnkevrasegrkvseerninegktngvrvneeekinaegkvngrd
mdvtssgaevvpekiedkkdgglTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDifrtpgsvavGIRTEMVEYLTKRSETFVAEsviledpdqaevsdhPYDIISDFVDEFALSKRNLFsrvsgwmssekreDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSyfdklaeapdvrSLSFAIKDLeaklgpfkedtvnrysgegkvneekkinevkpdgegtingevniseegkinatdkvnekekisnkskpneggkgneqekdsdgdvkegkftegknngrkvseedrihdeqnvnregtidggkinnetrvneeqkanepgkvtkgekvseegkandtgkvnkevrasegrkvseerninegktngvrvneeekinaegkvngrd
MDVTSSGAEVVPEKIEDKKDGGLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNLFSRVSGWMSSEKREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFDKLAEAPDVRSLSFAIKDLEAKLGPFKEDTVNRYSgegkvneekkinevkPDGEGTINGEVNISEEGKINATDKVNEKEKISNKSKPNEGGKGNEQEKDSDGDVKEGKFTEGKNNGRKVSEEDRIHDEQNVNREGTIDGGKINNETRVNEEQKANEPGKVTKGEKVSEEGKANDTGKVNKEVRASEGRKVSEERNINEGKTNGVRVNEEEKINAEGKVNGRD
*********************GLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNLFSRVSGWMS*****DRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFDKLAEAPDVRSLSFAIKDLEAKL*******************************************************************************************************************************************************************************************************
*************************HCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKRSE**********************DIISDFVDEFALSKRNLFSRVSG***********DDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKS**********VRSLSFAIKDLEA*********************************************************************************************************************************************************************************************************
*********VVPEKIEDKKDGGLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNLFSRVSGWMSSEKREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFDKLAEAPDVRSLSFAIKDLEAKLGPFKEDTVNRYSGEGKVNEEKKINEVKPDGEGTINGEVNISEEGKINATD********************************EGKFTEGKNNGRKVSEEDRIHDEQNVNREGTIDGGKINNETRVN***************************KVNKEVRASEGRKVSEERNINEGKTNGVRVNEEEKIN*********
*****SGAEVVPEKIEDKKDGGLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNLFSRVSGWMSSEKREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFDKLAEAPDVRSLSFAIKDLEAKLGPFKEDTVN**********************************************************************************************************************************************************************************************
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MDVTSSGAEVVPEKIEDKKDGGLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNLFSRVSGWMSSEKREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPxxxxxxxxxxxxxxxxxxxxxAPDVRSLSFAIKDLEAKLGPFKEDTVNRYSGEGKVNEEKKINEVKPDGEGTINGEVNISEEGKINATDKVNEKEKISNKSKPNEGGKGNEQEKDSDGDVKEGKFTEGKNNGRKVSEEDRIHDEQNVNREGTIDGGKINNETRVNEEQKANEPGKVTKGEKVSEEGKANDTGKVNKEVRASEGRKVSEERNINEGKTNGVRVNEEEKINAEGKVNGRD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query533 2.2.26 [Sep-21-2011]
P70191558 TNF receptor-associated f yes no 0.313 0.299 0.233 7e-06
Q86K46423 TNF receptor-associated f yes no 0.230 0.290 0.265 0.0002
O00463557 TNF receptor-associated f yes no 0.272 0.260 0.270 0.0005
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5 OS=Mus musculus GN=Traf5 PE=1 SV=1 Back     alignment and function desciption
 Score = 52.8 bits (125), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 39/206 (18%)

Query: 162 ILLKNVDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSV-- 219
           +L  +V  KN   CN +    +   +H+ HC F ++ CPNE C        +++H S   
Sbjct: 103 VLNLHVYCKNAPGCNARIILGR-FQDHLQHCSFQAVPCPNESCREAMLRKDVKEHLSAYC 161

Query: 220 --------------------------CPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLA 253
                                     CP   + C  +C  T+ R  ++ H +TVC     
Sbjct: 162 RFREEKCLYCKRDIVVTNLQDHEENSCPAYPVSCPNRCVQTIPRARVNEH-LTVCPEAEQ 220

Query: 254 NCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFDK 313
           +CPF   GC     +  + +H    L  H+L +L+K ++      L+ R+ +L +S   K
Sbjct: 221 DCPFKHYGCTVKGKRGNLLEHERAALQDHMLLVLEKNYQ------LEQRISDLYQSLEQK 274

Query: 314 LAEAPDVRSLSFAIKDLEAKLGPFKE 339
            ++   ++ L+  +K  E +L  F +
Sbjct: 275 ESK---IQQLAETVKKFEKELKQFTQ 297
Adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases. Mediates activation of NF-kappa-B and probably JNK. Seems to be involved in apoptosis.
Mus musculus (taxid: 10090)
>sp|Q86K46|Y7243_DICDI TNF receptor-associated factor family protein DDB_G0277243 OS=Dictyostelium discoideum GN=DDB_G0277243 PE=3 SV=1 Back     alignment and function description
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
356570927528 PREDICTED: uncharacterized protein LOC10 0.651 0.657 0.632 1e-135
225441571366 PREDICTED: uncharacterized protein LOC10 0.684 0.997 0.634 1e-134
356503879521 PREDICTED: uncharacterized protein LOC10 0.936 0.957 0.490 1e-133
224138162395 predicted protein [Populus trichocarpa] 0.647 0.873 0.640 1e-131
255570449417 hypothetical protein RCOM_0763260 [Ricin 0.641 0.820 0.636 1e-129
145338396572 homogentisate solanesyltransferase [Arab 0.707 0.659 0.566 1e-126
449453888629 PREDICTED: uncharacterized protein LOC10 0.705 0.597 0.566 1e-124
297833986564 hypothetical protein ARALYDRAFT_341316 [ 0.767 0.725 0.535 1e-123
449517279459 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.742 0.862 0.540 1e-122
356500393416 PREDICTED: uncharacterized protein LOC10 0.677 0.867 0.565 1e-116
>gi|356570927|ref|XP_003553634.1| PREDICTED: uncharacterized protein LOC100799182 [Glycine max] Back     alignment and taxonomy information
 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 220/348 (63%), Positives = 279/348 (80%), Gaps = 1/348 (0%)

Query: 1   MDVTSSGAEVVPEKIEDKKDGGLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFR 60
           MD+ +   ++ PEK+ED+K GG   HC+L DTE+VHK+AQ FLPGLASACVDNT+GD+F+
Sbjct: 7   MDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFK 66

Query: 61  TPGSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRN 120
           TPGSVAV +R EM+EY+T+RSE+FVAESVILE     E SDHP+DIISDFVD+F  SKRN
Sbjct: 67  TPGSVAVDLRKEMIEYVTQRSESFVAESVILEGGPDGEESDHPFDIISDFVDDFVSSKRN 126

Query: 121 LFSRVSGWMSSEKREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFN 180
           LFSRVSGW+ SEKREDRIDDF+QEME++GFW+++RRE IA  LLKNVDF+N +HCNM FN
Sbjct: 127 LFSRVSGWLLSEKREDRIDDFVQEMEMNGFWTLDRRETIAETLLKNVDFENSYHCNMSFN 186

Query: 181 SEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDM 240
           S +EL  H+ +C F +MIC NEGCN++F A HL+ HDS CPFKIIPCEQKC D +MRR+M
Sbjct: 187 SAEELVNHVDNCNFRTMICENEGCNSRFCAAHLKNHDSTCPFKIIPCEQKCSDCIMRREM 246

Query: 241 DRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLK 300
           DRHCIT+C MKL NCPFY VGC+S + QCMI++HR DD+ SHL ++L+ +++      LK
Sbjct: 247 DRHCITICPMKLVNCPFYVVGCRSAVAQCMIEKHRLDDVHSHLWHLLKGIYKQAYGDDLK 306

Query: 301 NRVEELEKSYFDKLAEAPDVRSLSFAIKDLEAKLGPFKEDTVNRYSGE 348
            RVE++ +    +LAEA DVRSL+F +KD+EAKLGPFK   + + + E
Sbjct: 307 RRVEQIVQVSL-RLAEARDVRSLNFIVKDIEAKLGPFKVSVLEKNNAE 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441571|ref|XP_002276694.1| PREDICTED: uncharacterized protein LOC100246957 [Vitis vinifera] gi|297739780|emb|CBI29962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356503879|ref|XP_003520728.1| PREDICTED: uncharacterized protein LOC100819268 [Glycine max] Back     alignment and taxonomy information
>gi|224138162|ref|XP_002322745.1| predicted protein [Populus trichocarpa] gi|222867375|gb|EEF04506.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570449|ref|XP_002526183.1| hypothetical protein RCOM_0763260 [Ricinus communis] gi|223534487|gb|EEF36187.1| hypothetical protein RCOM_0763260 [Ricinus communis] Back     alignment and taxonomy information
>gi|145338396|ref|NP_187801.3| homogentisate solanesyltransferase [Arabidopsis thaliana] gi|334185269|ref|NP_001189865.1| homogentisate solanesyltransferase [Arabidopsis thaliana] gi|6671951|gb|AAF23211.1|AC016795_24 hypothetical protein [Arabidopsis thaliana] gi|10998134|dbj|BAB03105.1| unnamed protein product [Arabidopsis thaliana] gi|110741563|dbj|BAE98730.1| hypothetical protein [Arabidopsis thaliana] gi|332641606|gb|AEE75127.1| homogentisate solanesyltransferase [Arabidopsis thaliana] gi|332641607|gb|AEE75128.1| homogentisate solanesyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449453888|ref|XP_004144688.1| PREDICTED: uncharacterized protein LOC101209212 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297833986|ref|XP_002884875.1| hypothetical protein ARALYDRAFT_341316 [Arabidopsis lyrata subsp. lyrata] gi|297330715|gb|EFH61134.1| hypothetical protein ARALYDRAFT_341316 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449517279|ref|XP_004165673.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230210 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356500393|ref|XP_003519016.1| PREDICTED: uncharacterized protein LOC100802183 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
TAIR|locus:2081561572 AT3G11950 "AT3G11950" [Arabido 0.904 0.842 0.467 1e-114
UNIPROTKB|E1C2K2366 TRAF5 "Uncharacterized protein 0.318 0.464 0.252 8.3e-10
UNIPROTKB|Q805B1557 TRAF-5 "Uncharacterized protei 0.318 0.305 0.252 2e-09
DICTYBASE|DDB_G0274265 600 DDB_G0274265 [Dictyostelium di 0.270 0.24 0.224 6.2e-09
UNIPROTKB|E2RR95557 TRAF5 "Uncharacterized protein 0.191 0.183 0.330 5.4e-08
UNIPROTKB|J9P706559 TRAF5 "Uncharacterized protein 0.200 0.191 0.318 5.4e-08
UNIPROTKB|I3L7X2558 TRAF5 "Uncharacterized protein 0.243 0.232 0.299 6.9e-08
UNIPROTKB|Q5LKH1 642 Q5LKH1 "Putative uncharacteriz 0.288 0.239 0.323 8.6e-08
TIGR_CMR|SPO_A0410 642 SPO_A0410 "hypothetical protei 0.288 0.239 0.323 8.6e-08
UNIPROTKB|A7YWC7558 TRAF5 "Uncharacterized protein 0.290 0.277 0.274 8.9e-08
TAIR|locus:2081561 AT3G11950 "AT3G11950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 238/509 (46%), Positives = 319/509 (62%)

Query:    13 EKIEDKKDGGLTFHCNLSDTEIVHKIAQEFLPGLASACVDNTTGDIFRTPGSVAVGIRTE 72
             E IED+K+GG +FHC+L DT++VHKIAQ FLPGLA+ACVDNTTGDIFR+PGSVA  IR E
Sbjct:     9 ESIEDQKEGGPSFHCDLYDTQVVHKIAQVFLPGLATACVDNTTGDIFRSPGSVAADIRKE 68

Query:    73 MVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNLFSRVSGWMSSE 132
             M+EYLT+RSETFVAE ++L+   + E S  P+DIISDF+D+FA SKRNLFSRVSGWM SE
Sbjct:    69 MIEYLTRRSETFVAEHIVLQGGSEIEASHDPFDIISDFIDDFATSKRNLFSRVSGWMLSE 128

Query:   133 KREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNEFHCNMKFNSEKELNEHMLHC 192
             +RED IDDF QEMEISGFW  + RE IA  LLKNVDFK+  HC MKF +E EL EH ++C
Sbjct:   129 RREDNIDDFAQEMEISGFWLTDHREGIAQTLLKNVDFKSSAHCEMKFQTEGELAEHAMNC 188

Query:   193 GFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKL 252
             G+ +M C NEGC A F A  +E HDSVCPFKIIPCEQ C +++MRRDMDRHCITVC MKL
Sbjct:   189 GYRTMNCENEGCTAVFCANQMENHDSVCPFKIIPCEQNCSESIMRRDMDRHCITVCPMKL 248

Query:   253 ANCPFYAVGCQSTIPQCMIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEELEKSYFD 312
              NCPF++VGC S + QC +QQH  D++ SHL+YIL+ ++++  L  LK R E++++    
Sbjct:   249 VNCPFHSVGCLSDVHQCEVQQHHLDNVSSHLMYILRSIYKEASLDDLKPRAEQIQQ-LST 307

Query:   313 KLAEAPDVRSLSFAIKDLEAKLGPFKEDTVNRYSXXXXXXXXXXXXXXXPDGEGTINGEV 372
             +L+EA + RSL+  +K+++ KLGP +                       P+     N E 
Sbjct:   308 RLSEARNARSLTNLVKEIDGKLGPLE----------IKPKIVTDSESDKPE-----NTEK 352

Query:   373 NISEEGKINATDKVNEKEKISNKSKPNEGGKGNEQEKDSDGD-VKEG--KFTEGKNNGRK 429
                EE +I    + +  + ++ +    E  +     K+ D   VKE   K +E +     
Sbjct:   353 KALEEAEIKEKPETSNLKAVTLEQTAREAPEDKLVSKEVDAAMVKEAAKKVSEAEI-ADN 411

Query:   430 VSEEDRIHDEQNVNREGTIDGGKINNETRVNEEQKANEPGKVTKGEKVSEEG--KANDTG 487
             V+EE  +  ++ +     I  G  N+   ++E  +   P  V   E   EE   +  DT 
Sbjct:   412 VNEEGELKAQKLLEIGEFIKEGDNNSADDLSERTETKAPEVVVMDEAREEEDSVETKDT- 470

Query:   488 KVNKEVRASE---GRKVSEE-RNINEGKT 512
             +  + +R  E      + EE +   E KT
Sbjct:   471 RTYETIRGLEIEANEMIDEETKKSTETKT 499
GO:0004659 "prenyltransferase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
UNIPROTKB|E1C2K2 TRAF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q805B1 TRAF-5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274265 DDB_G0274265 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E2RR95 TRAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P706 TRAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3L7X2 TRAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LKH1 Q5LKH1 "Putative uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0410 SPO_A0410 "hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|A7YWC7 TRAF5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
pfam0217660 pfam02176, zf-TRAF, TRAF-type zinc finger 3e-10
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 6e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.004
>gnl|CDD|190233 pfam02176, zf-TRAF, TRAF-type zinc finger Back     alignment and domain information 
 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 216 HDSVCPFKIIPCEQKCPDTLM-RRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQH 274
           H   CPF  +PC   C    + R D+  H    C  +   CPF   GC+  +P+  +Q+H
Sbjct: 1   HLKTCPFAPVPCPNGCCKKKILREDVPDHLEEDCPKREVPCPFKPYGCKVDMPREALQKH 60

Length = 60
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 533
PLN03086567 PRLI-interacting factor K; Provisional 99.22
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 99.19
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 98.72
PLN03086567 PRLI-interacting factor K; Provisional 98.68
KOG0297391 consensus TNF receptor-associated factor [Signal t 98.58
KOG0297391 consensus TNF receptor-associated factor [Signal t 97.38
PF03145198 Sina: Seven in absentia protein family; InterPro: 96.76
PF03145198 Sina: Seven in absentia protein family; InterPro: 95.23
KOG2462279 consensus C2H2-type Zn-finger protein [Transcripti 88.87
KOG3002299 consensus Zn finger protein [General function pred 88.26
KOG2462279 consensus C2H2-type Zn-finger protein [Transcripti 88.07
KOG3002299 consensus Zn finger protein [General function pred 83.95
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information 
Probab=99.22  E-value=6.1e-12  Score=138.25  Aligned_cols=105  Identities=21%  Similarity=0.513  Sum_probs=85.8

Q ss_pred             eecccCCCCcccccCchhHHHHHhhcCCceeeCCCCCCCCccccchhhhhc------------------CcCCCcceecc
Q 009502          167 VDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHD------------------SVCPFKIIPCE  228 (533)
Q Consensus       167 V~C~N~~GC~ekv~trkeLe~Hle~C~yR~V~CpN~gC~e~~~~~dLq~H~------------------~~Cp~rpV~Cp  228 (533)
                      |.|+|   |.|.+ ....|..|+..|.|..+.||+.+|+..|.+.+++.|.                  ..| +.++.||
T Consensus       408 V~C~N---C~~~i-~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~-Hkpv~Cp  482 (567)
T PLN03086        408 VECRN---CKHYI-PSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVF-HEPLQCP  482 (567)
T ss_pred             EECCC---CCCcc-chhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccchHHHHHHHHhc-CCCccCC
Confidence            66776   99999 6999999999999999999975566666655555554                  444 4678998


Q ss_pred             CCCCCccccccccccccccccccccCCCCCcCCCCCCCchh-----------HHHHHHhhchhHH
Q 009502          229 QKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQC-----------MIQQHRHDDLCSH  282 (533)
Q Consensus       229 n~Cg~kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~-----------eL~~He~ecl~eH  282 (533)
                        |+..+.|..|..|+...||.+++.|+|    |...+++.           .|..|+..|...|
T Consensus       483 --Cg~~~~R~~L~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt  541 (567)
T PLN03086        483 --CGVVLEKEQMVQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESICGSRT  541 (567)
T ss_pred             --CCCCcchhHHHhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHhcCCcc
Confidence              998899999999998899999999999    99887644           6888888775554

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila Back     alignment and domain information
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila Back     alignment and domain information
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 5e-15
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 2e-10
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 6e-04
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 4e-13
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 8e-04
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 1e-06
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 9e-05
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 6e-06
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 5e-05
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 6e-05
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Length = 76 Back     alignment and structure
 Score = 69.2 bits (169), Expect = 5e-15
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 214 EKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQ 273
             H + C F +IPC  +CP  L RRD+  H    C  +   C F    C         + 
Sbjct: 6   SGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYES 61

Query: 274 H 274
           H
Sbjct: 62  H 62
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 99.3
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 99.18
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.17
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.14
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 98.73
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 98.69
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 98.37
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 97.92
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 97.67
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 97.61
2dlq_A124 GLI-kruppel family member HKR3; ZF-C2H2 domain, st 96.55
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 96.44
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 95.64
2jp9_A119 Wilms tumor 1; DNA binding, nucleic acid recogniti 95.62
2i13_A190 AART; DNA binding, zinc finger, DNA binding protei 95.32
2i13_A190 AART; DNA binding, zinc finger, DNA binding protei 95.2
1ubd_C124 Protein (YY1 zinc finger domain); transcription in 94.4
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 93.01
2gli_A155 Protein (five-finger GLI); protein/DNA complex, tr 92.81
2ee8_A106 Protein ODD-skipped-related 2; zinc binding, ZF-C2 92.51
1tf6_A190 Protein (transcription factor IIIA); complex (tran 92.44
2dmd_A96 Zinc finger protein 64, isoforms 1 and 2; ZNF338, 92.23
2csh_A110 Zinc finger protein 297B; ZF-C2H2 domain, zinc fin 91.65
2yt9_A95 Zinc finger-containing protein 1; C2H2, structural 91.05
2wbs_A89 Krueppel-like factor 4; transcription-DNA complex, 90.85
2ebt_A100 Krueppel-like factor 5; C2H2-type zinc-finger, met 90.8
2dmi_A115 Teashirt homolog 3; zinc finger protein 537, struc 90.49
2kmk_A82 Zinc finger protein GFI-1; tandem repeat zinc fing 90.27
2dmi_A115 Teashirt homolog 3; zinc finger protein 537, struc 90.26
1a1h_A90 QGSR zinc finger peptide; complex (zinc finger/DNA 90.14
2yt9_A95 Zinc finger-containing protein 1; C2H2, structural 90.1
2dmd_A96 Zinc finger protein 64, isoforms 1 and 2; ZNF338, 89.28
2ee8_A106 Protein ODD-skipped-related 2; zinc binding, ZF-C2 88.88
1tf6_A190 Protein (transcription factor IIIA); complex (tran 88.51
2dlq_A124 GLI-kruppel family member HKR3; ZF-C2H2 domain, st 88.44
2gli_A155 Protein (five-finger GLI); protein/DNA complex, tr 87.96
2rpc_A155 Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr 87.72
1a1h_A90 QGSR zinc finger peptide; complex (zinc finger/DNA 87.54
2lt7_A133 Transcriptional regulator kaiso; zinc finger, doub 87.45
2kmk_A82 Zinc finger protein GFI-1; tandem repeat zinc fing 87.23
1wjp_A107 Zinc finger protein 295; ZF-C2H2 domain, zinc bind 87.22
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 86.76
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 86.7
2ebt_A100 Krueppel-like factor 5; C2H2-type zinc-finger, met 86.41
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 86.29
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 86.24
2dlk_A79 Novel protein; ZF-C2H2 domain, zinc finger protein 85.25
1llm_C88 Chimera of ZIF23-GCN4; dimerization, DNA recogniti 84.93
2csh_A110 Zinc finger protein 297B; ZF-C2H2 domain, zinc fin 84.13
2rpc_A155 Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr 83.99
2wbs_A89 Krueppel-like factor 4; transcription-DNA complex, 83.7
2jp9_A119 Wilms tumor 1; DNA binding, nucleic acid recogniti 82.45
2l7x_A77 Envelope glycoprotein; cytoplasmic tail, viral pro 81.27
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 81.11
1ubd_C124 Protein (YY1 zinc finger domain); transcription in 81.04
2j7j_A85 Transcription factor IIIA; zinc finger module, alt 80.34
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
Probab=99.30  E-value=3.1e-13  Score=109.71  Aligned_cols=72  Identities=25%  Similarity=0.491  Sum_probs=65.8

Q ss_pred             hhHHHHHhhcCCceeeCCCCCCCCccccchhhhhcC-cCCCcceeccCCCCCccccccccccccccccccccCCCC
Q 009502          183 KELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHDS-VCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPF  257 (533)
Q Consensus       183 keLe~Hle~C~yR~V~CpN~gC~e~~~~~dLq~H~~-~Cp~rpV~Cpn~Cg~kI~R~eLe~Hl~~eCPkr~V~CpF  257 (533)
                      .+|+.|+..|+|++|.||+ +|+..+.+.+|+.|.. .||++++.|+ +|+..+.+.+|+.|. ..||.+++.|++
T Consensus         3 ~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~-~C~~~~~~~~l~~H~-~~Cp~~~v~C~~   75 (76)
T 2yuc_A            3 SGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCE-FCGCDFSGEAYESHE-GMCPQESSGPSS   75 (76)
T ss_dssp             CSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCS-SSCCCCCHHHHHHTT-TSCTTSSCCCSC
T ss_pred             hHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECC-CCCCccCHHHHHHHH-hHCCCCccCCCC
Confidence            5677899889999999987 8999999999999997 8999999998 799999999999995 789999999987
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Back     alignment and structure
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Back     alignment and structure
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Back     alignment and structure
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Back     alignment and structure
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Back     alignment and structure
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Back     alignment and structure
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Back     alignment and structure
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Back     alignment and structure
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Back     alignment and structure
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Back     alignment and structure
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Back     alignment and structure
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Back     alignment and structure
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Back     alignment and structure
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Back     alignment and structure
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A* Back     alignment and structure
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Back     alignment and structure
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Back     alignment and structure
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Back     alignment and structure
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Back     alignment and structure
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Back     alignment and structure
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Back     alignment and structure
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Back     alignment and structure
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 533
d1k2fa_190 b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous 3e-04
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 13/111 (11%)

Query: 199 CPNE--GCNAKFSAGHLEKHDSVCPFKIIPC---EQKCPDTLMRRDMDRHCIT----VCQ 249
           C     GC          +H+ +C F+   C      C        +  H +     +  
Sbjct: 6   CKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITT 65

Query: 250 MKLANCPFYAVGCQSTIPQ-CMIQQHRHDDLCSHLLYILQKLHRDKPLKVL 299
           ++  +  F A           ++ Q        H + +L+K  +    +  
Sbjct: 66  LQGEDIVFLATDINLPGAVDWVMMQSCFGF---HFMLVLEKQEKYDGHQQF 113

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
d1k2fa_190 SIAH, seven in absentia homolog {Mouse (Mus muscul 96.74
d1k2fa_190 SIAH, seven in absentia homolog {Mouse (Mus muscul 95.24
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00033  Score=64.15  Aligned_cols=54  Identities=22%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             eecccC-CCCcccccCchhHHHHHhhcCCceeeCCCC--CCCCccccchhhhhcCcCC
Q 009502          167 VDFKNE-FHCNMKFNSEKELNEHMLHCGFISMICPNE--GCNAKFSAGHLEKHDSVCP  221 (533)
Q Consensus       167 V~C~N~-~GC~ekv~trkeLe~Hle~C~yR~V~CpN~--gC~e~~~~~dLq~H~~~Cp  221 (533)
                      +-|+|. .||.+.+ ...++..|.+.|.|+++.||.+  .|.|.....+|..|...+-
T Consensus         4 ~pC~~~~~GC~~~~-~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H   60 (190)
T d1k2fa_           4 FPCKYASSGCEITL-PHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH   60 (190)
T ss_dssp             CCCTTGGGTCCCCC-CGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSS
T ss_pred             EecCCCCCCCCEec-cccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcC
Confidence            568884 7999999 5999999999999999999764  4999999999999986554
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure