Citrus Sinensis ID: 009626

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
MANAGGIPGPEQKPEALNPNLDEIEEEEEEDDDVVEEEDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAPL
ccccccccccccccccccccccccccccccccHHHcccccccHHHHHcccccccccccccccEEEEEEEEEcccccEEEEEEEEEcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEEEccccccccEEEEEEEEEEEEccccccccEEEEEEEEEEEcccEEEEEEEEEEEEEEccccccccHHHHHHHcccEEEEEEEEEEEEccccccccccccEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEcccccccccccEEEEEccccc
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccEEEEEEEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEEEEEEccccccEEEEEEEccccccEEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEcccccccccccccEEEEEEccccccccccccccccEEEEEcccccccccEcEEEEEccccccccHHHHHHHccccccEEEEEEEEEccccccccccccEEEEEEEEEEEccccccccEEEEEEEccEEEEEccccccHEEEEEEEccEEccccccccccccccHccEcccccccEEEccccccEEccccccccccccccccccccccccccccccccccccHEEEEEEEEEccccccccccccEEEEEEEEccccccccccccccccccccHHHcEEEEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEccccc
managgipgpeqkpealnpnldeieeeeeedddvveeeddddleedddaaqpqrksrvdrpkiENLFRrirngpvplrVHDVIvkgntktkdCLIEAELDAIRNATTMQEIIQAANIINYKlrelecfdsveitldsgppelpgtsNVIIQVVEtktplsgqigtytkgeaksstvegslkykngfgygdlwdaslaygfdrsaevsagvylprfkglvtpmTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLawrtltdpshmssntvRRQLGHDFLSSLKYTfkfdkrnsplrptrgyafvsttqigglapdsrCLRFLRQefdlrfavpfgfyRTALNFGissgvvlpigrdflrmstslperfflggnlspicslggpsalwgfktrglgpaeprrqvrgdssdenadaserdflggdLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTEneyrnfslpkflqstrssvgagivfptnlfRLEVNYCRILkksshdhgkngiqislsapl
managgipgpeqkpealnpNLDEIEEEEEEDDDVVEeeddddleedddaaqpqrksrvdrpkienlfrrirngpvplrvhdvivkgntktkdcLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLdsgppelpgTSNVIIQVVETktplsgqigtytkgeaksstveGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTfkfdkrnsplrptRGYAfvsttqigglapDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGlgpaeprrqvrgdssdenaDASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILkksshdhgkngiqislsapl
MANAGGIPGPEQKPEALNPNldeieeeeeedddvveeeddddleedddAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAPL
****************************************************************NLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSG***LPGTSNVIIQVVETKTPLSGQIGTYT********VEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDP******TVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTR**************************FLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILK*******************
*********PEQKPEAL*****************VEEEDDDDLEEDDDAAQPQR***VDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEIT*********GTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAPL
********GPEQKPEALNPNLDE*********************************RVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTK********EGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPA****************ASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAPL
***********Q*PEALNPNLDEIEEEEEEDDDVVEEEDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQV***********SERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSA**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANAGGIPGPEQKPEALNPNxxxxxxxxxxxxxxxxxxxxxDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query530 2.2.26 [Sep-21-2011]
Q6P806468 Sorting and assembly mach yes no 0.805 0.912 0.278 1e-28
Q6PA35468 Sorting and assembly mach N/A no 0.803 0.910 0.270 5e-28
Q7ZWS5468 Sorting and assembly mach N/A no 0.803 0.910 0.268 1e-26
Q5U3I0469 Sorting and assembly mach yes no 0.758 0.857 0.270 2e-26
Q803G5469 Sorting and assembly mach no no 0.803 0.908 0.257 1e-25
Q8BGH2469 Sorting and assembly mach yes no 0.760 0.859 0.265 5e-25
Q9Y512469 Sorting and assembly mach yes no 0.762 0.861 0.268 5e-25
Q6AXV4469 Sorting and assembly mach yes no 0.762 0.861 0.262 2e-24
Q2HJ55469 Sorting and assembly mach yes no 0.760 0.859 0.265 3e-20
Q10478475 SAM50-like protein SPAC17 yes no 0.773 0.863 0.242 2e-14
>sp|Q6P806|SAM50_XENTR Sorting and assembly machinery component 50 homolog OS=Xenopus tropicalis GN=samm50 PE=2 SV=1 Back     alignment and function desciption
 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 219/500 (43%), Gaps = 73/500 (14%)

Query: 38  EDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEA 97
            DD DL E     +PQ+K  +    +EN         V  RVH    +G  +TKD LI  
Sbjct: 22  HDDADLVE----VEPQKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLIAH 64

Query: 98  ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET 155
           E+  +  A  + E+++ ++    KL  L  F +VE+ +D+  G   LP   +V  +V E 
Sbjct: 65  EIGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDALPNGLDVTFEVTEL 124

Query: 156 KTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLP 213
           +  L+G   T   G  + S V G LK  N FG  +      +YG   + E S G+  + P
Sbjct: 125 RR-LTGSYNTMV-GNNEGSMVLG-LKLPNLFGRAEKMTFQFSYG---TKETSYGLSFFKP 178

Query: 214 RFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDP 270
           +        +  ++ +      +SS +E   G+S  + F I    H L +   WR L   
Sbjct: 179 QVGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCL 237

Query: 271 SHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFL 330
           +  +S  +R + GH   SSL +T   D RN+ + P RG       ++ G       + FL
Sbjct: 238 ARTASFAIREESGHTLKSSLSHTMVIDSRNTSILPKRGALLKINQELAGYTGGD--VSFL 295

Query: 331 RQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGG 390
           +++F+L+       + + L+  +  G+++PIG       +S+ +RF+          LGG
Sbjct: 296 KEDFELQLNKQLA-WDSVLSTSLWGGMLVPIGDK----PSSIADRFY----------LGG 340

Query: 391 PSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFR 450
           P+++ GF    +GP                  SE D+LGG+   +    L   LP R   
Sbjct: 341 PTSVRGFSMYSIGP-----------------QSEGDYLGGEAYWAGGMHLYTPLPFR--P 381

Query: 451 EKGIHG-----HLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPT-NLFRLEV 504
            +G  G     H F  AGN+  L   E     L +  +  R S GAGIV    N+ RLE+
Sbjct: 382 GRGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLRRLAECIRWSYGAGIVLRLGNIARLEL 441

Query: 505 NYCRILKKSSHDHGKNGIQI 524
           NYC  +   S D   +G+Q 
Sbjct: 442 NYCIPMGVQSGDRICDGVQF 461
May be required for the assembly pathway of mitochondrial outer membrane proteins.
Xenopus tropicalis (taxid: 8364)
>sp|Q6PA35|SAM5B_XENLA Sorting and assembly machinery component 50 homolog B OS=Xenopus laevis GN=samm50-b PE=2 SV=1 Back     alignment and function description
>sp|Q7ZWS5|SAM5A_XENLA Sorting and assembly machinery component 50 homolog A OS=Xenopus laevis GN=samm50-a PE=2 SV=1 Back     alignment and function description
>sp|Q5U3I0|SAM5B_DANRE Sorting and assembly machinery component 50 homolog B OS=Danio rerio GN=samm50b PE=2 SV=1 Back     alignment and function description
>sp|Q803G5|SAM5A_DANRE Sorting and assembly machinery component 50 homolog A OS=Danio rerio GN=samm50a PE=2 SV=1 Back     alignment and function description
>sp|Q8BGH2|SAM50_MOUSE Sorting and assembly machinery component 50 homolog OS=Mus musculus GN=Samm50 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y512|SAM50_HUMAN Sorting and assembly machinery component 50 homolog OS=Homo sapiens GN=SAMM50 PE=1 SV=3 Back     alignment and function description
>sp|Q6AXV4|SAM50_RAT Sorting and assembly machinery component 50 homolog OS=Rattus norvegicus GN=Samm50 PE=1 SV=1 Back     alignment and function description
>sp|Q2HJ55|SAM50_BOVIN Sorting and assembly machinery component 50 homolog OS=Bos taurus GN=SAMM50 PE=2 SV=1 Back     alignment and function description
>sp|Q10478|SAM50_SCHPO SAM50-like protein SPAC17C9.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.06 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
18414910524 outer membrane OMP85 family protein [Ara 0.969 0.980 0.636 0.0
21553544524 unknown [Arabidopsis thaliana] 0.969 0.980 0.634 0.0
224101179519 predicted protein [Populus trichocarpa] 0.947 0.967 0.658 0.0
297806563524 outer membrane OMP85 family protein [Ara 0.979 0.990 0.618 0.0
15228433520 outer membrane OMP85-like protein [Arabi 0.873 0.890 0.672 0.0
449444624536 PREDICTED: sorting and assembly machiner 0.886 0.876 0.678 0.0
224109276524 predicted protein [Populus trichocarpa] 0.884 0.895 0.691 0.0
225448511534 PREDICTED: sorting and assembly machiner 0.977 0.970 0.646 0.0
255574840518 sorting and assembly machinery (sam50) p 0.898 0.918 0.681 0.0
297829662515 outer membrane OMP85 family protein [Ara 0.877 0.902 0.682 0.0
>gi|18414910|ref|NP_568157.1| outer membrane OMP85 family protein [Arabidopsis thaliana] gi|10178129|dbj|BAB11541.1| unnamed protein product [Arabidopsis thaliana] gi|16648863|gb|AAL24283.1| Unknown protein [Arabidopsis thaliana] gi|20259796|gb|AAM13245.1| unknown protein [Arabidopsis thaliana] gi|332003500|gb|AED90883.1| outer membrane OMP85 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/522 (63%), Positives = 432/522 (82%), Gaps = 8/522 (1%)

Query: 10  PEQKPEALNPNLDEIEEEEEEDD--DVVEEEDDDDLEEDDDAAQPQRK--SRVDRPKIEN 65
           P +KP+  NP+  +IE E+E ++  D+  +E++++  E++D  +P+ +  +  DR K E+
Sbjct: 4   PAEKPDP-NPSKPKIESEDEREELGDINGDEEEEEEYEEEDDGKPRTREDAIADRIKAES 62

Query: 66  LFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLREL 125
           LFRR+R  PV +RVHDVIVKGN KTKD +IEAE+D +R ATT+QE+++A+ + N+ L+ L
Sbjct: 63  LFRRMRATPVAVRVHDVIVKGNEKTKDHVIEAEVDVVRQATTLQELLKASKVANFNLQAL 122

Query: 126 ECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNG 185
           + FDSV+ITLDSGPPELPGT+NV+I VVE+K+P++GQIGT+TK EA+SS++EGSLKYKN 
Sbjct: 123 DIFDSVKITLDSGPPELPGTTNVVIDVVESKSPITGQIGTFTKAEARSSSLEGSLKYKNI 182

Query: 186 FGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLG 245
           FGYGD+WD SLAYG D SAEV  G+YLPRF+G  TP T+RV+L +QDWLKFSSYKE++LG
Sbjct: 183 FGYGDIWDGSLAYGCDHSAEVGLGMYLPRFRGRPTPFTSRVYLSTQDWLKFSSYKERALG 242

Query: 246 LSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRP 305
           LSLGL + ++H+L YN+AWR L DPS M+S ++RRQLGH+ +S+LKYTFKFD+RNS LRP
Sbjct: 243 LSLGLIASKYHELAYNIAWRNLIDPSQMASRSIRRQLGHNLVSALKYTFKFDQRNSSLRP 302

Query: 306 TRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDF 365
           TRGY+F+ST+QIGGLAPDSR LRFLRQE DLR+AVP GFYR ALNFGI+ G+  P G  +
Sbjct: 303 TRGYSFISTSQIGGLAPDSRTLRFLRQEIDLRYAVPLGFYRAALNFGIAGGITFPWGSGY 362

Query: 366 LRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASER 425
              ++ +PERFFLGGN+SP+CSLGGPSALWGFKTRGLGP EPRR+V+    DE+ D  ER
Sbjct: 363 KSRASCVPERFFLGGNISPVCSLGGPSALWGFKTRGLGPNEPRREVQ---DDESGDTYER 419

Query: 426 DFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQST 485
           DF+GGD+AV+AFADLSFD PL+WFR++GIHGH+FACAGN+A+L+EN+YRNF+ PK L++ 
Sbjct: 420 DFVGGDVAVTAFADLSFDFPLKWFRDRGIHGHVFACAGNMAELSENKYRNFTAPKLLETF 479

Query: 486 RSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLS 527
           RSSVGAGIV PT+LFR+E+NYC ILKK  HD  K+G  ++ S
Sbjct: 480 RSSVGAGIVVPTSLFRMELNYCHILKKQEHDRAKSGFFMTFS 521

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21553544|gb|AAM62637.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224101179|ref|XP_002312173.1| predicted protein [Populus trichocarpa] gi|118486263|gb|ABK94973.1| unknown [Populus trichocarpa] gi|222851993|gb|EEE89540.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297806563|ref|XP_002871165.1| outer membrane OMP85 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317002|gb|EFH47424.1| outer membrane OMP85 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228433|ref|NP_187718.1| outer membrane OMP85-like protein [Arabidopsis thaliana] gi|6016688|gb|AAF01515.1|AC009991_11 unknown protein [Arabidopsis thaliana] gi|12321882|gb|AAG50978.1|AC073395_20 unknown protein; 4967-6981 [Arabidopsis thaliana] gi|20466221|gb|AAM20428.1| unknown protein [Arabidopsis thaliana] gi|25084079|gb|AAN72169.1| unknown protein [Arabidopsis thaliana] gi|332641478|gb|AEE74999.1| outer membrane OMP85-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449444624|ref|XP_004140074.1| PREDICTED: sorting and assembly machinery component 50 homolog [Cucumis sativus] gi|449490420|ref|XP_004158600.1| PREDICTED: sorting and assembly machinery component 50 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|224109276|ref|XP_002315145.1| predicted protein [Populus trichocarpa] gi|222864185|gb|EEF01316.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448511|ref|XP_002273082.1| PREDICTED: sorting and assembly machinery component 50 homolog B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574840|ref|XP_002528327.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] gi|223532282|gb|EEF34085.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297829662|ref|XP_002882713.1| outer membrane OMP85 family protein [Arabidopsis lyrata subsp. lyrata] gi|297328553|gb|EFH58972.1| outer membrane OMP85 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
TAIR|locus:2169702524 AT5G05520 "AT5G05520" [Arabido 0.879 0.889 0.678 2.3e-181
TAIR|locus:2074618520 AT3G11070 "AT3G11070" [Arabido 0.873 0.890 0.672 8.1e-179
UNIPROTKB|E1C8A2469 SAMM50 "Uncharacterized protei 0.549 0.620 0.256 3.4e-23
POMBASE|SPAC17C9.06475 sam50 "mitochondrial sorting a 0.605 0.675 0.250 2e-17
ZFIN|ZDB-GENE-041114-30469 samm50l "sorting and assembly 0.547 0.618 0.268 4.5e-17
ASPGD|ASPL0000065328516 AN10873 [Emericella nidulans ( 0.807 0.829 0.248 7.7e-17
MGI|MGI:1915903469 Samm50 "sorting and assembly m 0.549 0.620 0.266 1.7e-16
UNIPROTKB|F6UPR4456 SAMM50 "Uncharacterized protei 0.549 0.638 0.269 9.5e-16
UNIPROTKB|Q9Y512469 SAMM50 "Sorting and assembly m 0.549 0.620 0.266 1e-15
RGD|1303219469 Samm50 "sorting and assembly m 0.549 0.620 0.262 1e-15
TAIR|locus:2169702 AT5G05520 "AT5G05520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1760 (624.6 bits), Expect = 2.3e-181, P = 2.3e-181
 Identities = 318/469 (67%), Positives = 399/469 (85%)

Query:    59 DRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANII 118
             DR K E+LFRR+R  PV +RVHDVIVKGN KTKD +IEAE+D +R ATT+QE+++A+ + 
Sbjct:    56 DRIKAESLFRRMRATPVAVRVHDVIVKGNEKTKDHVIEAEVDVVRQATTLQELLKASKVA 115

Query:   119 NYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEG 178
             N+ L+ L+ FDSV+ITLDSGPPELPGT+NV+I VVE+K+P++GQIGT+TK EA+SS++EG
Sbjct:   116 NFNLQALDIFDSVKITLDSGPPELPGTTNVVIDVVESKSPITGQIGTFTKAEARSSSLEG 175

Query:   179 SLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSS 238
             SLKYKN FGYGD+WD SLAYG D SAEV  G+YLPRF+G  TP T+RV+L +QDWLKFSS
Sbjct:   176 SLKYKNIFGYGDIWDGSLAYGCDHSAEVGLGMYLPRFRGRPTPFTSRVYLSTQDWLKFSS 235

Query:   239 YKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDK 298
             YKE++LGLSLGL + ++H+L YN+AWR L DPS M+S ++RRQLGH+ +S+LKYTFKFD+
Sbjct:   236 YKERALGLSLGLIASKYHELAYNIAWRNLIDPSQMASRSIRRQLGHNLVSALKYTFKFDQ 295

Query:   299 RNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVV 358
             RNS LRPTRGY+F+ST+QIGGLAPDSR LRFLRQE DLR+AVP GFYR ALNFGI+ G+ 
Sbjct:   296 RNSSLRPTRGYSFISTSQIGGLAPDSRTLRFLRQEIDLRYAVPLGFYRAALNFGIAGGIT 355

Query:   359 LPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDE 418
              P G  +   ++ +PERFFLGGN+SP+CSLGGPSALWGFKTRGLGP EPRR+V+    DE
Sbjct:   356 FPWGSGYKSRASCVPERFFLGGNISPVCSLGGPSALWGFKTRGLGPNEPRREVQ---DDE 412

Query:   419 NADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSL 478
             + D  ERDF+GGD+AV+AFADLSFD PL+WFR++GIHGH+FACAGN+A+L+EN+YRNF+ 
Sbjct:   413 SGDTYERDFVGGDVAVTAFADLSFDFPLKWFRDRGIHGHVFACAGNMAELSENKYRNFTA 472

Query:   479 PKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLS 527
             PK L++ RSSVGAGIV PT+LFR+E+NYC ILKK  HD  K+G  ++ S
Sbjct:   473 PKLLETFRSSVGAGIVVPTSLFRMELNYCHILKKQEHDRAKSGFFMTFS 521
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051604 "protein maturation" evidence=RCA
TAIR|locus:2074618 AT3G11070 "AT3G11070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8A2 SAMM50 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPAC17C9.06 sam50 "mitochondrial sorting and assembly machinery complex subunit Sam50 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-30 samm50l "sorting and assembly machinery component 50 homolog, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000065328 AN10873 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:1915903 Samm50 "sorting and assembly machinery component 50 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6UPR4 SAMM50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y512 SAMM50 "Sorting and assembly machinery component 50 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1303219 Samm50 "sorting and assembly machinery component 50 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT5G05520
outer membrane OMP85 family protein; outer membrane OMP85 family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, plastid; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Bacterial surface antigen (D15) (InterPro-IPR000184), Surface antigen variable number (InterPro-IPR010827); BEST Arabidopsis thaliana protein match is- outer membrane OMP85 family protein (TAIR-AT3G11070.1); Has 1168 Blast hits to 1166 proteins in 370 species- Archae - 0; Bacteria - 488; Metazoa - 1 [...] (524 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT2G19080
metaxin-related; metaxin-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protei [...] (315 aa)
     •• 0.933
AT3G11070
outer membrane OMP85 family protein; outer membrane OMP85 family protein; FUNCTIONS IN- molecul [...] (520 aa)
  •  •••0.904
DL4605C
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (4218 aa)
      • 0.867
MIRO2
MIRO2 (MIRO-RELATED GTP-ASE 2); GTPase/ calcium ion binding; Encodes a calcium binding GTPases [...] (643 aa)
      • 0.786
MIRO1
MIRO1 (Miro-related GTP-ase 1); GTP binding; Encodes a protein with similarity to GTPases that [...] (648 aa)
   •  • 0.703
HKL1
HKL1 (HEXOKINASE-LIKE 1); ATP binding / fructokinase/ glucokinase/ hexokinase; HEXOKINASE-LIKE [...] (498 aa)
      • 0.659
BIGYIN
BIGYIN; binding; Encodes a protein with similarity to yeast FIS proteins. These membrane anchor [...] (170 aa)
      • 0.599
AT3G52730
ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein; ubiquinol-cytochrome C reducta [...] (72 aa)
      • 0.563
AT1G24267
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (344 aa)
      • 0.563
AT5G55610
unknown protein; unknown protein; LOCATED IN- mitochondrion, chloroplast, plastid, membrane; EX [...] (329 aa)
   •  • 0.554

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
COG4775766 COG4775, COG4775, Outer membrane protein/protectiv 7e-40
pfam01103317 pfam01103, Bac_surface_Ag, Surface antigen 5e-28
TIGR03303741 TIGR03303, OM_YaeT, outer membrane protein assembl 7e-22
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 1e-04
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 5e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 0.001
>gnl|CDD|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  154 bits (390), Expect = 7e-40
 Identities = 107/451 (23%), Positives = 171/451 (37%), Gaps = 64/451 (14%)

Query: 79  VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSG 138
           V  + ++GNT+TKD +I  E+         ++++Q       +L     F+SV I    G
Sbjct: 346 VRRIRIRGNTRTKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGY---FESVNIDTAPG 402

Query: 139 PPELPGTSNVIIQVVETKTPLSGQIGT---YTKGEAKSSTVEGSLKYKNGFGYGDLWDAS 195
                   +V++ V E  T   G I     Y      S     SL  +N  G G     +
Sbjct: 403 S--GSDQVDVVVDVKERST---GSINFGLGYGSDSGLS--GFASLSERNFLGTGQSLSLN 455

Query: 196 LAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFS----SYKEQSLGLSLGLF 251
              G  +++  S     P F      +   +F    D         SY+ ++ G  + L 
Sbjct: 456 ANLGDKQTS-YSLSFTDPYFLDDRVSLGFNLFSNRYDTFDADTANDSYRVKTYGGGVSLG 514

Query: 252 -----SIRHHDLVYNLAWRTLTDPS-----HMSSNTVRRQLGHDFLSSLKYTFKFDKRNS 301
                ++    L Y     +L+  +       +S  V+ Q G   LSSL   + +D R++
Sbjct: 515 RPITENLSLG-LGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDLSSLSLGWTYDTRDN 573

Query: 302 PLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPI 361
            L PT+G     T ++ GL  D   +++ + E D     P   Y   L+     G     
Sbjct: 574 ALFPTKGSYLSLTQEVAGLGGD---IKYYKLELDGSKYYPLTDYIFTLSLRGEVGYGKGY 630

Query: 362 GRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENAD 421
           G   L +     ERF+LGG+ S          + GF++ GLGP    +    D+      
Sbjct: 631 GTKLLPIY----ERFYLGGSNS----------VRGFESGGLGP----KDGYTDA------ 666

Query: 422 ASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKF 481
                 LGG     A A+L F LP       G+ G LF  AG+V     +     +    
Sbjct: 667 ------LGGTSYFVASAELRFPLP--KVIGSGVRGALFFDAGSVWNTGTDPSTVRNFYGS 718

Query: 482 LQSTRSSVGAGIVFPTNLFRLEVNYCRILKK 512
               R+S G G+ + + L  L  +Y   +KK
Sbjct: 719 GSELRASAGVGLRWASPLGPLRFDYAFPIKK 749

Length = 766
>gnl|CDD|216300 pfam01103, Bac_surface_Ag, Surface antigen Back     alignment and domain information
>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 530
KOG2602457 consensus Predicted cell surface protein homologou 100.0
COG4775766 Outer membrane protein/protective antigen OMA87 [C 100.0
PRK11067803 outer membrane protein assembly factor YaeT; Provi 100.0
TIGR03303741 OM_YaeT outer membrane protein assembly complex, Y 100.0
TIGR00992718 3a0901s03IAP75 chloroplast envelope protein transl 100.0
COG0729594 Outer membrane protein [Cell envelope biogenesis, 100.0
PLN03138796 Protein TOC75; Provisional 100.0
PF01103323 Bac_surface_Ag: Surface antigen; InterPro: IPR0001 100.0
COG2831554 FhaC Hemolysin activation/secretion protein [Intra 99.9
PF03865404 ShlB: Haemolysin secretion/activation protein ShlB 99.78
PF0724478 Surf_Ag_VNR: Surface antigen variable number repea 98.71
TIGR03303741 OM_YaeT outer membrane protein assembly complex, Y 97.54
PRK11067 803 outer membrane protein assembly factor YaeT; Provi 97.25
COG4775 766 Outer membrane protein/protective antigen OMA87 [C 97.06
PLN03138 796 Protein TOC75; Provisional 96.75
PF0847869 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013 96.32
TIGR00992 718 3a0901s03IAP75 chloroplast envelope protein transl 95.96
PF09026101 CENP-B_dimeris: Centromere protein B dimerisation 95.89
PF09026101 CENP-B_dimeris: Centromere protein B dimerisation 94.31
PRK05529255 cell division protein FtsQ; Provisional 94.25
PF0847976 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013 92.74
COG1589269 FtsQ Cell division septal protein [Cell envelope b 90.3
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-64  Score=502.01  Aligned_cols=412  Identities=45%  Similarity=0.729  Sum_probs=374.1

Q ss_pred             EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcC--CCCCCCCceEEEEEEEEe
Q 009626           78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET  155 (530)
Q Consensus        78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~--~~~~~~~~v~l~v~V~E~  155 (530)
                      +|++|+|.|+.+||+++|++++...-.....++++.+++++..+|+++++|+.|.+.++.  ++++.|+..+|++.|+|.
T Consensus        37 ~v~~V~v~Gl~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~~~~Vt~~v~E~  116 (457)
T KOG2602|consen   37 RVDHVIVSGLERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPGGLVVTFLVTEP  116 (457)
T ss_pred             eeeEEEeccccccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCCceeEEEEeeec
Confidence            899999999999999999999977666667899999999999999999999999999997  566788899999999999


Q ss_pred             cCCceeeeeE-EeeCCccceEEEEEEEEecCCCCccEEEEEEEEeeeeeeEEEEEEeeeeecCCCCcceEEEEeeecccc
Q 009626          156 KTPLSGQIGT-YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL  234 (530)
Q Consensus       156 ~~~~~g~~g~-~~s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~  234 (530)
                      ++ +++..|. .++   ....+.+.+.++|++|+|+.|+.++.|+......++++|..|++.+...++.....+..+||.
T Consensus       117 kr-~tg~~GT~~gn---~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~~~~~~~~~~~~~d~~  192 (457)
T KOG2602|consen  117 KR-LTGSTGTDVGN---REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLKTPFSSFSIFRTQDWM  192 (457)
T ss_pred             ch-heeeccccccC---CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCCcchhhhhhhhhhccc
Confidence            86 6777774 222   345788889999999999999999999977678899999999999888888888888889999


Q ss_pred             ccccceEEEEEEEEEEcc----cceEEEEEEEEEEEcCCCCCCCcHHHHHHhCCcceeeeEEEEEEeCCCCCCCCCceee
Q 009626          235 KFSSYKEQSLGLSLGLFS----IRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA  310 (530)
Q Consensus       235 ~~~s~~~~~~g~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~s~~i~~~~g~~~~~sl~~~~~~d~rd~~~~Pt~G~~  310 (530)
                      +++++++...|+++.+..    .+.|.+.|+..||++..+++.++.+|+.+.|+.++++|++++++|+||..+.||+|++
T Consensus       193 ~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~s~L~~tfv~D~Rd~~~~ptrG~~  272 (457)
T KOG2602|consen  193 KWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSLKSSLSYTFVFDKRDSSIIPTRGIL  272 (457)
T ss_pred             ccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHHHHhhcceEEEeccCCcccccccce
Confidence            999999999999998852    3479999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeecCCCcccceeeeeEeeeEEEEEecccceEEEEEEEEEEEeecCCCcccCCCCCCcccccCCCCCCcccCCC
Q 009626          311 FVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGG  390 (530)
Q Consensus       311 ~~~~~~~~glg~~~~~~~f~k~~~~~~~~~~l~~~~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lGg~~~~~~~~gG  390 (530)
                      +..+.|++|++++   +.|+|.+++++...||. ...+|++++++|++.++++    +++++.||||+|          |
T Consensus       273 ~k~~~e~~g~~~~---~sf~k~e~~lq~avpl~-~~~~~s~~~~~G~l~~~~~----~~v~I~dRFylG----------G  334 (457)
T KOG2602|consen  273 LKSTSELAGLFGD---VSFLKSELDLQKAVPLG-FDATLSFSFSGGVLKPLGS----RPVSIADRFYLG----------G  334 (457)
T ss_pred             eEeehhhcCcccc---hhhhhhhhhheeccccc-cceeeEeeEeeeeeecCCC----CccchhhhhccC----------C
Confidence            9999999999887   89999999999999998 4589999999999999987    799999999999          8


Q ss_pred             CCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEEeecccccccCc
Q 009626          391 PSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTE  470 (530)
Q Consensus       391 ~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F~DaG~v~~~~~  470 (530)
                      +++||||+.++|||++                 .++++||+.++.+++.|.+|+|+++....++++|+|+++|++.+..+
T Consensus       335 ps~lRGFk~~giGP~~-----------------~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~fr~h~F~naG~l~~l~s  397 (457)
T KOG2602|consen  335 PSDLRGFKTRGIGPKD-----------------EGDFLGGDAFVAAGAHLYFPLPFAKGFKSGFRGHVFANAGNLANLSS  397 (457)
T ss_pred             cccccccccCCcCCCC-----------------CCcccCCceeeEeeeEecccCCcccccccceeeEEEeccccccccCc
Confidence            9999999999999997                 46899999999999999999999876667899999999999999876


Q ss_pred             ccccCCChhhhccCceeeeeEEEEEeeC-ceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626          471 NEYRNFSLPKFLQSTRSSVGAGIVFPTN-LFRLEVNYCRILKKSSHDHGKNGIQISLSAP  529 (530)
Q Consensus       471 ~~~~~~~~~~~~~~~~~s~G~Glr~~tp-~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~  529 (530)
                       +..+...+++..++++|+|+||.+++| .++++|+||+|++++.+|+...||||++|..
T Consensus       398 -~~~~~~~~kl~e~~r~S~G~Glv~~~~~~aR~ELNy~~pl~~~e~D~~~~GfqfG~g~~  456 (457)
T KOG2602|consen  398 -EAPKNTIPKLLETFRTSVGAGLVVPTPRAARLELNYCLPLKKQENDRIRKGFQFGAGID  456 (457)
T ss_pred             -ccccchhhhhhhhhccccccceEEecchhhceeeeeEEEeeeeccchhhcceEeccccc
Confidence             333445667789999999999999999 9999999999999999999999999999864

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11067 outer membrane protein assembly factor YaeT; Provisional Back     alignment and domain information
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein [] Back     alignment and domain information
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate Back     alignment and domain information
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus Back     alignment and domain information
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>PRK11067 outer membrane protein assembly factor YaeT; Provisional Back     alignment and domain information
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain) Back     alignment and domain information
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box Back     alignment and domain information
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box Back     alignment and domain information
>PRK05529 cell division protein FtsQ; Provisional Back     alignment and domain information
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO) Back     alignment and domain information
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
2qdz_A554 TPSB transporter FHAC; beta barrel, potra domain, 100.0
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 99.08
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 98.57
3mc9_A316 ALR2269 protein; polypeptide transport associated, 98.49
2qdf_A335 OMP85, outer membrane protein assembly factor YAET 98.37
3efc_A395 OMP85, outer membrane protein assembly factor YAET 98.2
3mc9_A316 ALR2269 protein; polypeptide transport associated, 97.99
3efc_A395 OMP85, outer membrane protein assembly factor YAET 97.76
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 97.72
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 97.44
2qdf_A335 OMP85, outer membrane protein assembly factor YAET 97.14
2vh1_A220 FTSQ, cell division protein FTSQ; potra, membrane, 91.3
2vh2_A255 FTSQ, cell division protein FTSQ; potra, cell cycl 91.13
2qdz_A554 TPSB transporter FHAC; beta barrel, potra domain, 84.15
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Back     alignment and structure
Probab=100.00  E-value=2.5e-35  Score=321.28  Aligned_cols=381  Identities=11%  Similarity=0.067  Sum_probs=269.3

Q ss_pred             EEEEEEEECCcccCHHHHHH---HhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEE
Q 009626           78 RVHDVIVKGNTKTKDCLIEA---ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE  154 (530)
Q Consensus        78 ~i~~V~i~G~~~tk~~vI~r---~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E  154 (530)
                      +|++|+|.|+.++++.+|++   ++++++|++++.+.|+++   +++|.+++  .+|.+.+.++  ..++.++|+|+|+|
T Consensus       135 ~i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~---~~~L~~~~--~~v~~~~~p~--~~~g~~~l~v~v~e  207 (554)
T 2qdz_A          135 RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQA---IYNINNGG--KTGNITIVPA--DEYGYSYLDLQLQR  207 (554)
T ss_dssp             EEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHH---HHHHCSSS--EEEEEEEEEC--SSTTEEEEEEEEEE
T ss_pred             EEEEEEECCCCccchhhhhhhhhhccccCCCcCCHHHHHHH---HHHHhcCc--hhceEEEecC--CCCCeeEEEEEEee
Confidence            38999999999999999999   999999999999999996   99999999  7888888854  56889999999999


Q ss_pred             ecCCceeeeeE-E-e--eCCccceEEEEEEEEecCCCCccEEEEEEEEee------eeeeEEEEEEeeeeecCCCCcceE
Q 009626          155 TKTPLSGQIGT-Y-T--KGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGF------DRSAEVSAGVYLPRFKGLVTPMTA  224 (530)
Q Consensus       155 ~~~~~~g~~g~-~-~--s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~------~~~~~~~~~~~~P~~~~~~~~~~~  224 (530)
                      +++ +.+.+|+ + +  +...+++.+.+.+++.|++|.|+++++++..+.      ...+.+.++|+.|+..   +.+.+
T Consensus       208 ~~~-~~~~~g~~~~g~g~~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~~---~~~~~  283 (554)
T 2qdz_A          208 RAL-PRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGR---TRLDL  283 (554)
T ss_dssp             CCS-CEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETT---EEEEE
T ss_pred             CCc-EEEEEEEcCCCCCCCCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEec---CeEEE
Confidence            864 4666764 2 2  222356899999999999999999999999986      1367899999999863   45555


Q ss_pred             EEEeeecccc---cc--ccceEEEEEEEEEEc------ccceEEEEEEEEEEEcCCCCCCCcHHHHHHhCCcceeeeEEE
Q 009626          225 RVFLQSQDWL---KF--SSYKEQSLGLSLGLF------SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYT  293 (530)
Q Consensus       225 ~~~~~~~~~~---~~--~s~~~~~~g~~~~l~------~~~~~~l~~~~~~~~~~~~~~~~s~~i~~~~g~~~~~sl~~~  293 (530)
                      .+++...+..   ..  ..|...+.++++++.      ....+.+++.+.++++.+......  +  ..+.....++.++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~  359 (554)
T 2qdz_A          284 QTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR--L--DVSSKHYSDVTVG  359 (554)
T ss_dssp             EEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS--C--CCEEEEEEEEEEE
T ss_pred             EEEEeEEEEEccCCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcC--c--cccCceEEEEEEE
Confidence            5555443211   01  134444455554442      245566666666665532111110  0  0123345678889


Q ss_pred             EEEeCCCCCCCCCceeeEEEEEEeee-cCCC--------cccceeeeeEeeeEEEEEe--cccceEEEEEEEEEEEeecC
Q 009626          294 FKFDKRNSPLRPTRGYAFVSTTQIGG-LAPD--------SRCLRFLRQEFDLRFAVPF--GFYRTALNFGISSGVVLPIG  362 (530)
Q Consensus       294 ~~~d~rd~~~~Pt~G~~~~~~~~~~g-lg~~--------~~~~~f~k~~~~~~~~~~l--~~~~~~l~~~~~~G~i~~~~  362 (530)
                      +.||+++    |..++.+++.+..+. ++..        ..+.+|.|+.+++++|+||  ...++++.+++.+++.    
T Consensus       360 ~~~~~~~----~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~q~~----  431 (554)
T 2qdz_A          360 MQYSTQR----GANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYS----  431 (554)
T ss_dssp             EEEEEEC----SSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEC----
T ss_pred             EEEEEEe----cCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEEeEec----
Confidence            9999875    444555544443211 1100        0237899999999999996  2145667666666543    


Q ss_pred             CCcccCCCCCCcccccCCCCCCcccCCCCCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEE
Q 009626          363 RDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSF  442 (530)
Q Consensus       363 ~~~~~~~~p~~drF~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~  442 (530)
                      .    ..+|.+|+|++|          |.++||||..++++|.                         +..+.+++|++|
T Consensus       432 ~----~~lp~~e~f~lG----------G~~sVRGy~~~~l~pG-------------------------d~g~~~~~El~~  472 (554)
T 2qdz_A          432 R----QQLLNSYQITVG----------DEYTVRGYNLRTSQSG-------------------------DSGVYLSNTLTV  472 (554)
T ss_dssp             S----SCSSSSEECCSC----------CCCCCTTCCCCCSCCS-------------------------SCSSCCEESEEE
T ss_pred             C----CCCCcHHhEecC----------CCCeECCcccccccCC-------------------------CccEEEEEEEEe
Confidence            2    369999999999          8899999998888764                         233568889999


Q ss_pred             eCCcccccC-CCeeEEEEeecccccccCcccccCCChhhhccCceeeeeEEEEEeeCceEEEEEEEEecccc-CCCCCcc
Q 009626          443 DLPLRWFRE-KGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKS-SHDHGKN  520 (530)
Q Consensus       443 ~lp~~~~~~-~~~~~~~F~DaG~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~g~l~ldya~pl~~~-~~d~~~~  520 (530)
                      ++...+... ..+.+++|+|+|+||+....      .   ...+++|+|+||||.+|.+|++|+||+||.+. +++....
T Consensus       473 ~~~~~~~~~~~~~~~~~F~D~G~v~~~~~~------~---~~~~~~g~G~Glr~~~~~~~l~l~~a~pl~~~~~~~~~~~  543 (554)
T 2qdz_A          473 PVQFSLLGKQASVAPFVGADVGALKSNHPD------A---RTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAP  543 (554)
T ss_dssp             EEEEEEEECCSSCEEEEEEEEEEEECSSSS------C---CEEEEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCC
T ss_pred             eccccccCccceEEEEEEEEEEEEecCCCC------C---CCCEEEEEEEEEEEecCcEEEEEEEEeeccCCcccccCCc
Confidence            861100111 36899999999999986421      0   24678999999999999999999999999887 5541223


Q ss_pred             cE-EEeccCC
Q 009626          521 GI-QISLSAP  529 (530)
Q Consensus       521 gf-~f~~g~~  529 (530)
                      .| +|+||..
T Consensus       544 ~~~~fsig~~  553 (554)
T 2qdz_A          544 VWLYINAGLS  553 (554)
T ss_dssp             SEEEEEEEEE
T ss_pred             eEEEEEEEEE
Confidence            49 9999864
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Back     alignment and structure
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Back     alignment and structure
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Back     alignment and structure
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Back     alignment and structure
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli} Back     alignment and structure
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Back     alignment and structure
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli} Back     alignment and structure
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Back     alignment and structure
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Back     alignment and structure
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Back     alignment and structure
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli} Back     alignment and structure
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} Back     alignment and structure
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00