Citrus Sinensis ID: 009663
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C501 | 538 | Pentatricopeptide repeat- | yes | no | 0.977 | 0.960 | 0.609 | 0.0 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.941 | 0.932 | 0.378 | 1e-109 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.958 | 0.931 | 0.374 | 1e-107 | |
| Q9FNN7 | 511 | Pentatricopeptide repeat- | no | no | 0.914 | 0.947 | 0.388 | 1e-104 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.937 | 0.767 | 0.372 | 1e-100 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.962 | 0.960 | 0.371 | 3e-97 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.935 | 0.798 | 0.347 | 3e-96 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.950 | 0.782 | 0.328 | 2e-95 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.844 | 0.707 | 0.382 | 2e-94 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.933 | 0.883 | 0.349 | 2e-91 |
| >sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/520 (60%), Positives = 403/520 (77%), Gaps = 3/520 (0%)
Query: 10 QTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIF 69
Q LNQ + A++ + H+NHLKQ+QSF+ G S ++F FKL+RFCTL+L NL+YARFIF
Sbjct: 21 QLLNQFISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIF 80
Query: 70 DHLTTPNTYLYTAMITAYASQ-PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL 128
D + PNT+LY A++TAY+S P HASSAFS +R MV R P+PN FIYP VLKS P +
Sbjct: 81 DRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLS 140
Query: 129 ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI 188
+ T +VHT + KSGF Y VV+TAL++SY+ S + I +AR+LFDEMS+RNVVSWTAM+
Sbjct: 141 SAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAML 200
Query: 189 SGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP 248
SGY R GDI NA +LF+ MP+RDVP+WN+++A CTQNGLF +A+S FRRM E S IRP
Sbjct: 201 SGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPS--IRP 258
Query: 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308
N+VT+VC LSA TG LQL K IH + YR L D F+SN+L+D+YGKCG+L+EA F
Sbjct: 259 NEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVF 318
Query: 309 DRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG 368
SKK LT+WNSMIN FALHG+SE +I VFEEMM+ ++I+PD +TFI LLNACTHGG
Sbjct: 319 KMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGG 378
Query: 369 LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSL 428
LV +GR YF LMT + IEP+IEHYGCL+DLLGRAGRF+EALEV+ MK++ DE +WGSL
Sbjct: 379 LVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSL 438
Query: 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488
LN CKI+G D AE AVK L+ ++PNNGGY M+AN+YGE+G W+E R+ RKM+K +NAY
Sbjct: 439 LNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAY 498
Query: 489 KTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVAL 528
K PG S IE+D +VHQF+SLDK+HP TEEIY L+S+++
Sbjct: 499 KPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSLISF 538
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/507 (37%), Positives = 313/507 (61%), Gaps = 9/507 (1%)
Query: 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPN 76
+ L+R N K++ + + G SQ++F K+V FC K+ ++ YA +F+ ++ PN
Sbjct: 14 IPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCD-KIEDMDYATRLFNQVSNPN 72
Query: 77 TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136
+LY ++I AY + +Y+ ++R+ P++F +P + KSC + K V
Sbjct: 73 VFLYNSIIRAYTHNSLYCD-VIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 137 HTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGD 196
H + K G + V E AL++ Y + +D+ A K+FDEM +R+V+SW +++SGY R+G
Sbjct: 132 HGHLCKFGPRFHVVTENALIDMYMKF-DDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 197 IKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256
+K A LF M D+ + +W ++I+G T G + +A+ FFR M + I P++++L+
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA---GIEPDEISLISV 247
Query: 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL 316
L + G L+LGK IH Y R G + + NALI+MY KCG + +A + F + K +
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307
Query: 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAY 376
SW++MI+ +A HG + +I F EM R + ++P+G+TF+ LL+AC+H G+ ++G Y
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAK---VKPNGITFLGLLSACSHVGMWQEGLRY 364
Query: 377 FKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYG 436
F +M + Y+IEP+IEHYGCL+D+L RAG+ E A+E+ K M ++PD +WGSLL+ C+ G
Sbjct: 365 FDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPG 424
Query: 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWI 496
D A A+ L+E++P + G ++LANIY +LGKW++V ++RKM+++ N KTPG S I
Sbjct: 425 NLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
Query: 497 EVDKQVHQFHSLDKTHPRTEEIYDALE 523
EV+ V +F S D + P EI L+
Sbjct: 485 EVNNIVQEFVSGDNSKPFWTEISIVLQ 511
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/521 (37%), Positives = 304/521 (58%), Gaps = 14/521 (2%)
Query: 5 TNQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTY 64
+N L + + ++++L C +I H+ + + + Q F F+L+R C+ L ++ Y
Sbjct: 21 SNTLRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCS-TLDSVDY 79
Query: 65 ARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSC 124
A +F +++ PN YLYTAMI + S ++ SLY M+ P+ ++ VLK+C
Sbjct: 80 AYDVFSYVSNPNVYLYTAMIDGFVSS-GRSADGVSLYHRMIH-NSVLPDNYVITSVLKAC 137
Query: 125 PDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSW 184
+ + + +H Q++K GF V ++ Y +SG + A+K+FDEM DR+ V+
Sbjct: 138 ----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVN-AKKMFDEMPDRDHVAA 192
Query: 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD 244
T MI+ Y+ G IK A LF + +D W ++I G +N + A+ FR M ME
Sbjct: 193 TVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQME--- 249
Query: 245 NIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEA 304
N+ N+ T VC LSA G L+LG+ +H +V ++L +F+ NALI+MY +CG + EA
Sbjct: 250 NVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEA 309
Query: 305 RRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364
RR F K + S+N+MI+ A+HG S +I F +M+ + RP+ VT ++LLNAC
Sbjct: 310 RRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMV---NRGFRPNQVTLVALLNAC 366
Query: 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVV 424
+HGGL++ G F M + + +EPQIEHYGC+VDLLGR GR EEA ++ + IEPD ++
Sbjct: 367 SHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIM 426
Query: 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484
G+LL+ CKI+G + E K+L E + + G ++L+N+Y GKW E ++R+ ++D
Sbjct: 427 LGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRD 486
Query: 485 RNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525
K PGCS IEVD Q+H+F D HP E IY L+ +
Sbjct: 487 SGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQEL 527
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/505 (38%), Positives = 304/505 (60%), Gaps = 21/505 (4%)
Query: 26 INHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMIT 85
+N +KQL + G +T +L L + NL YAR +FDH T+LY +I
Sbjct: 1 MNGIKQLHAHCLRTGVDETKDLLQRL-----LLIPNLVYARKLFDHHQNSCTFLYNKLIQ 55
Query: 86 AY--ASQPAHASSAFSLYR-DMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVK 142
AY QP + ++L D +R P+ + + + +R +++H+Q +
Sbjct: 56 AYYVHHQPHESIVLYNLLSFDGLR-----PSHHTFNFIFAASASFSSARPLRLLHSQFFR 110
Query: 143 SGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAAS 202
SGFE T L+ +Y++ G + AR++FDEMS R+V W AMI+GY R GD+K A
Sbjct: 111 SGFESDSFCCTTLITAYAKLGA-LCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAME 169
Query: 203 LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH 262
LFDSMP ++V +W +VI+G +QNG +S+A+ F + ME +++PN +T+V L A +
Sbjct: 170 LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMF--LCMEKDKSVKPNHITVVSVLPACAN 227
Query: 263 TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR-LTSWNS 321
G L++G+ + GY NG + ++ NA I+MY KCG + A+R F+ +R L SWNS
Sbjct: 228 LGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNS 287
Query: 322 MINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381
MI S A HG+ + ++ +F +M+R +PD VTF+ LL AC HGG+V +G+ FK M
Sbjct: 288 MIGSLATHGKHDEALTLFAQMLR---EGEKPDAVTFVGLLLACVHGGMVVKGQELFKSME 344
Query: 382 KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFA 441
+ ++I P++EHYGC++DLLGR G+ +EA +++K M ++PD VVWG+LL C +G + A
Sbjct: 345 EVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIA 404
Query: 442 EFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW-IEVDK 500
E A + L +++P N G ++++NIY KWD V ++RK++K K G S+ +EV
Sbjct: 405 EIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGV 464
Query: 501 QVHQFHSLDKTHPRTEEIYDALESM 525
VH+F DK+HPR+ EIY LE +
Sbjct: 465 DVHKFTVEDKSHPRSYEIYQVLEEI 489
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/521 (37%), Positives = 298/521 (57%), Gaps = 25/521 (4%)
Query: 20 LERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCT---LKLSNLTYARFIFDHLTTPN 76
+ C I L Q+ + GQ + A +++RFC L +L YA IF+ + N
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 77 TYLYTAMITAYA-SQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKM 135
+ + +I ++ S A A +L+ +M+ +PN+F +P VLK+C + + K
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 136 VHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDE---------MSDR-----NV 181
+H +K GF V + LV Y G + AR LF + M+DR +
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGF-MKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208
Query: 182 VSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGME 241
V W MI GY R+GD K A LFD M R V +WN++I+G + NG F DA+ FR M
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK-- 266
Query: 242 VSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSL 301
+IRPN VTLV L AI G L+LG+ +H Y +G+ +D + +ALIDMY KCG +
Sbjct: 267 -KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 325
Query: 302 KEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361
++A F+R ++ + +W++MIN FA+HGQ+ ++I F +M + +RP V +I+LL
Sbjct: 326 EKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKM---RQAGVRPSDVAYINLL 382
Query: 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPD 421
AC+HGGLVE+GR YF M +EP+IEHYGC+VDLLGR+G +EA E + M I+PD
Sbjct: 383 TACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPD 442
Query: 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481
+V+W +LL C++ G + + L+++ P++ G + L+N+Y G W EV ++R
Sbjct: 443 DVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLR 502
Query: 482 LKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDAL 522
+K+++ K PGCS I++D +H+F D +HP+ +EI L
Sbjct: 503 MKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSML 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 194/522 (37%), Positives = 304/522 (58%), Gaps = 13/522 (2%)
Query: 8 LNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARF 67
L+ LN V ++ N++ LKQ ++ G ++ N K + C+ +L YA
Sbjct: 10 LSSGLNWFVTSLKIHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACS-NAGHLRYAYS 68
Query: 68 IFDHLTTPNTYLYTAMITAYA--SQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCP 125
+F H PNTYL+ MI A + +P S A ++YR + +P+ F +P VLK
Sbjct: 69 VFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALC-AKPDTFTFPFVLKIAV 127
Query: 126 DVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWT 185
V + + +H Q+V GF+ V T L+ Y G +G ARK+FDEM ++V W
Sbjct: 128 RVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGG-LGDARKMFDEMLVKDVNVWN 186
Query: 186 AMISGYTRVGDIKNAASLFDSMP--DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243
A+++GY +VG++ A SL + MP R+ +W VI+G ++G S+AI F+RM ME
Sbjct: 187 ALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLME-- 244
Query: 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303
N+ P++VTL+ LSA G L+LG+ I YV G++ ++NA+IDMY K G++ +
Sbjct: 245 -NVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITK 303
Query: 304 ARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNA 363
A F+ +++ + +W ++I A HG ++ +F M++ +RP+ VTFI++L+A
Sbjct: 304 ALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKA---GVRPNDVTFIAILSA 360
Query: 364 CTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEV 423
C+H G V+ G+ F M Y I P IEHYGC++DLLGRAG+ EA EV+K M + +
Sbjct: 361 CSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAA 420
Query: 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483
+WGSLL ++ + E A+ +LI+++PNN G ++LAN+Y LG+WDE R +R M+K
Sbjct: 421 IWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMK 480
Query: 484 DRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525
K G S IEV+ +V++F S D THP+ E I++ L+ M
Sbjct: 481 GIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQEM 522
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 176/506 (34%), Positives = 290/506 (57%), Gaps = 11/506 (2%)
Query: 15 QVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSN--LTYARFIFDHL 72
+ ++ L+RC+ LKQ+ + + G Q ++ K + FC S+ L YA+ +FD
Sbjct: 16 ETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGF 75
Query: 73 TTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRG 132
P+T+L+ MI ++ S LY+ M+ P N + +P +LK+C ++
Sbjct: 76 DRPDTFLWNLMIRGFSCSDEPERSLL-LYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEE 133
Query: 133 TKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYT 192
T +H QI K G+E +L+NSY+ +GN +A LFD + + + VSW ++I GY
Sbjct: 134 TTQIHAQITKLGYENDVYAVNSLINSYAVTGN-FKLAHLLFDRIPEPDDVSWNSVIKGYV 192
Query: 193 RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252
+ G + A +LF M +++ +W ++I+G Q + +A+ F M + ++ P+ V+
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ---NSDVEPDNVS 249
Query: 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS 312
L ALSA G L+ GK IH Y+ + + +DS + LIDMY KCG ++EA F
Sbjct: 250 LANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK 309
Query: 313 KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372
KK + +W ++I+ +A HG +I F EM Q I+P+ +TF ++L AC++ GLVE+
Sbjct: 310 KKSVQAWTALISGYAYHGHGREAISKFMEM---QKMGIKPNVITFTAVLTACSYTGLVEE 366
Query: 373 GRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGC 432
G+ F M + Y ++P IEHYGC+VDLLGRAG +EA ++ M ++P+ V+WG+LL C
Sbjct: 367 GKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKAC 426
Query: 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPG 492
+I+ + E + LI IDP +GG + ANI+ KWD+ + R+++K++ K PG
Sbjct: 427 RIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPG 486
Query: 493 CSWIEVDKQVHQFHSLDKTHPRTEEI 518
CS I ++ H+F + D++HP E+I
Sbjct: 487 CSTISLEGTTHEFLAGDRSHPEIEKI 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/548 (32%), Positives = 299/548 (54%), Gaps = 45/548 (8%)
Query: 14 QQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSN-LTYARFIFDHL 72
L++L C ++ L Q+ G +++ KL+ C + +S+ L YAR +
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 73 TTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRG 132
P+ +++ ++ Y S+ ++ +++ +M+R+G P+ F + V+K+ + R
Sbjct: 66 PEPDAFMFNTLVRGY-SESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124
Query: 133 TKMVHTQIVKSGFEQYPVVETALVNSYSRSG----------------------------- 163
+H Q +K G E + V T L+ Y G
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184
Query: 164 -NDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGC 222
ND+ AR++FD+M RN SW M++GY + G++++A +F MP RD +W+++I G
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244
Query: 223 TQNGLFSDAISFFR---RMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN 279
NG F+++ +FR R GM PN+V+L LSA +G + GK++HG+V +
Sbjct: 245 AHNGSFNESFLYFRELQRAGMS------PNEVSLTGVLSACSQSGSFEFGKILHGFVEKA 298
Query: 280 GLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR-LTSWNSMINSFALHGQSENSICV 338
G ++NALIDMY +CG++ AR F+ +KR + SW SMI A+HGQ E ++ +
Sbjct: 299 GYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRL 358
Query: 339 FEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVD 398
F EM + + PDG++FISLL+AC+H GL+E+G YF M + Y IEP+IEHYGC+VD
Sbjct: 359 FNEM---TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVD 415
Query: 399 LLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY 458
L GR+G+ ++A + + M I P +VW +LL C +G + AE ++L E+DPNN G
Sbjct: 416 LYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGD 475
Query: 459 GIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEI 518
++L+N Y GKW +V +RK + + KT S +EV K +++F + +K E
Sbjct: 476 LVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEA 535
Query: 519 YDALESMV 526
++ L+ ++
Sbjct: 536 HEKLKEII 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/458 (38%), Positives = 282/458 (61%), Gaps = 11/458 (2%)
Query: 68 IFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127
+F P+ +L+TA I AS AF LY ++ + PN+F + +LKSC
Sbjct: 86 LFHQTIDPDLFLFTAAINT-ASINGLKDQAFLLYVQLLS-SEINPNEFTFSSLLKSC--- 140
Query: 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAM 187
++ K++HT ++K G P V T LV+ Y++ G D+ A+K+FD M +R++VS TAM
Sbjct: 141 -STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAK-GGDVVSAQKVFDRMPERSLVSSTAM 198
Query: 188 ISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIR 247
I+ Y + G+++ A +LFDSM +RD+ +WN +I G Q+G +DA+ F+++ E +
Sbjct: 199 ITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE--GKPK 256
Query: 248 PNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRA 307
P+++T+V ALSA G L+ G+ IH +V + + L+ + LIDMY KCGSL+EA
Sbjct: 257 PDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLV 316
Query: 308 FDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367
F+ +K + +WN+MI +A+HG S++++ +F EM ++P +TFI L AC H
Sbjct: 317 FNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGIT--GLQPTDITFIGTLQACAHA 374
Query: 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS 427
GLV +G F+ M + Y I+P+IEHYGCLV LLGRAG+ + A E +K M ++ D V+W S
Sbjct: 375 GLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSS 434
Query: 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487
+L CK++G + + LI ++ N G ++L+NIY +G ++ V KVR ++K++
Sbjct: 435 VLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 494
Query: 488 YKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525
K PG S IE++ +VH+F + D+ H +++EIY L +
Sbjct: 495 VKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKI 532
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/503 (34%), Positives = 285/503 (56%), Gaps = 9/503 (1%)
Query: 22 RCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYT 81
+C+ + LKQ+ + L G A +++ FC S++ YA +F + N +++
Sbjct: 34 QCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWN 93
Query: 82 AMITAYASQPAHASSAFSLYRDMV-RRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQI 140
+I + S+ + A S++ DM+ +P + YP V K+ + ++R + +H +
Sbjct: 94 TIIRGF-SRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMV 152
Query: 141 VKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNA 200
+K G E + +++ Y G I A ++F M +VV+W +MI G+ + G I A
Sbjct: 153 IKEGLEDDSFIRNTMLHMYVTCGCLIE-AWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 201 ASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAI 260
+LFD MP R+ +WNS+I+G +NG F DA+ FR M +++P+ T+V L+A
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ---EKDVKPDGFTMVSLLNAC 268
Query: 261 GHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWN 320
+ G + G+ IH Y+ RN +L+S + ALIDMY KCG ++E F+ KK+L+ WN
Sbjct: 269 AYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWN 328
Query: 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLM 380
SMI A +G E ++ +F E+ R + PD V+FI +L AC H G V + +F+LM
Sbjct: 329 SMILGLANNGFEERAMDLFSELER---SGLEPDSVSFIGVLTACAHSGEVHRADEFFRLM 385
Query: 381 TKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDF 440
+ Y IEP I+HY +V++LG AG EEA ++K M +E D V+W SLL+ C+ G +
Sbjct: 386 KEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEM 445
Query: 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDK 500
A+ A K L ++DP+ ++L+N Y G ++E + R ++K+R K GCS IEVD
Sbjct: 446 AKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDF 505
Query: 501 QVHQFHSLDKTHPRTEEIYDALE 523
+VH+F S THP++ EIY L+
Sbjct: 506 EVHEFISCGGTHPKSAEIYSLLD 528
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | ||||||
| 359493517 | 573 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.914 | 0.717 | 0.0 | |
| 449447707 | 563 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.914 | 0.663 | 0.0 | |
| 356561772 | 522 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.984 | 0.656 | 0.0 | |
| 15217517 | 538 | pentatricopeptide repeat-containing prot | 0.977 | 0.960 | 0.609 | 0.0 | |
| 357498595 | 528 | hypothetical protein MTR_6g059820 [Medic | 0.964 | 0.965 | 0.619 | 0.0 | |
| 297846320 | 586 | pentatricopeptide repeat-containing prot | 0.926 | 0.836 | 0.6 | 0.0 | |
| 357150199 | 523 | PREDICTED: pentatricopeptide repeat-cont | 0.950 | 0.961 | 0.510 | 1e-154 | |
| 222623259 | 748 | hypothetical protein OsJ_07563 [Oryza sa | 0.948 | 0.671 | 0.502 | 1e-149 | |
| 115447355 | 530 | Os02g0620800 [Oryza sativa Japonica Grou | 0.948 | 0.947 | 0.502 | 1e-149 | |
| 242065790 | 530 | hypothetical protein SORBIDRAFT_04g02630 | 0.964 | 0.962 | 0.495 | 1e-149 |
| >gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/534 (71%), Positives = 451/534 (84%), Gaps = 10/534 (1%)
Query: 1 MVSVTNQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLS 60
M NQLN LN VLA+LERC H+NHLKQLQ+FL TLG +QT+FYAFKL+RFCTL LS
Sbjct: 45 MAPPQNQLN--LNNSVLALLERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLALS 102
Query: 61 NLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHV 120
NL+YARFIFDH+ +PN YLYTAMITAYAS H +SA LYR+MVRR +P PN FIYPHV
Sbjct: 103 NLSYARFIFDHVESPNVYLYTAMITAYASHSDH-TSALLLYRNMVRRRRPWPNHFIYPHV 161
Query: 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRN 180
LKSC V+ +MVH Q+++SGFEQYPVV+TAL+++Y R +D+ AR LFDEM++RN
Sbjct: 162 LKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERN 221
Query: 181 VVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRM-- 238
VVSWTAMISGYTR+G I NA LF+ MP+RDVP+WN++IAG TQNGLF +A+S FRRM
Sbjct: 222 VVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIA 281
Query: 239 ---GMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295
G N RPNQVT VC+LSA GHTGML+LGK IHGYVYRNGL LDSF+SNAL+DMY
Sbjct: 282 VEAGAWGQGN-RPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMY 340
Query: 296 GKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV 355
GKCG LKEARR FDR ++ LTSWNSMIN ALHGQS+N+I VFEEMM C ++PD V
Sbjct: 341 GKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGS-GVKPDEV 399
Query: 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415
TFI LLNACTHGGLVE+G YF+LMT+ Y IEPQIEHYGCLVDLLGRAG+FEEA+EVV+G
Sbjct: 400 TFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRG 459
Query: 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475
M+IEPDEV+WGSLLNGCKI+G TD AEF++KKLI++DPNNGGYGIMLANIYGELGKWDEV
Sbjct: 460 MRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEV 519
Query: 476 RKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVALH 529
RKVRK+LK++NA+KTPGCSWIE+D QVHQF+S+DKTHPRTEEIY+ LES+++L+
Sbjct: 520 RKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTLESLISLY 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Cucumis sativus] gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/523 (66%), Positives = 425/523 (81%), Gaps = 8/523 (1%)
Query: 12 LNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDH 71
LNQ +A LE+C+++NHLKQLQ FL + G SQT F+AFKLVRFC L L++L YAR+IFD+
Sbjct: 42 LNQLFVAALEKCSNLNHLKQLQGFLISHGHSQTQFFAFKLVRFCNLTLADLCYARYIFDN 101
Query: 72 LTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESR 131
LT+PN +LYTAMITAYAS P +AF LYR+MVRRG +PN FIYPHVL+SCPDVL S
Sbjct: 102 LTSPNVFLYTAMITAYASYP-DPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSN 160
Query: 132 GTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGY 191
TKMVHTQ++KSGF YPVV+TA+V+SYSR +DIG AR++FDEM +R VVSWTAMISGY
Sbjct: 161 ATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGY 220
Query: 192 TRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRM---GMEVSDNIR- 247
R+G+ +A LF+SMP+RDVPAWN++IAGC QNG F +AI F+RM +E ++N R
Sbjct: 221 ARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRE 280
Query: 248 --PNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEAR 305
PN+ TL ALSA GHTGML LGK IHGYV++ DSFISNAL+DMYGKCG+LK AR
Sbjct: 281 NKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLKVAR 340
Query: 306 RAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACT 365
R FD + K LTSWNS+IN ALHG S ++I +F E++ C D ++P+ VTF+ +LNACT
Sbjct: 341 RVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGD-GVKPNEVTFVGVLNACT 399
Query: 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVW 425
HGGLVE+G +YF++M + Y IEPQIEH+GCL+DLLGRAGRFEEA+EVV+GM IEPDEVVW
Sbjct: 400 HGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPDEVVW 459
Query: 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485
GSLLN CKI+GR+D AE++VKKLIE+DP NGGY IMLANIY E GKWDEVRKVR++LK++
Sbjct: 460 GSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRRLLKEK 519
Query: 486 NAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVAL 528
NAYKTPGCSWIEVD QV+QF+S D +HP EEIY LESM++
Sbjct: 520 NAYKTPGCSWIEVDNQVYQFYSFDMSHPSVEEIYKTLESMISF 562
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/521 (65%), Positives = 423/521 (81%), Gaps = 7/521 (1%)
Query: 8 LNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARF 67
+ LN+ VL L + NH+NHLKQLQ++LTTLG + T+FYAFKL+RFCTL LSNLTYAR
Sbjct: 1 MKPNLNEHVLDTLSKSNHLNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLSNLTYARL 60
Query: 68 IFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127
IFDH+ + NT+L+TAMITAYA+ PA SA SL+R M+R P+PN FI+PH LK+CP
Sbjct: 61 IFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCP-- 118
Query: 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAM 187
ES + +H QIVKSGF +YPVV+TALV+SYS+ +G A+K+FDEMSDR+VVS+TAM
Sbjct: 119 -ESCAAESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAM 177
Query: 188 ISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIR 247
+SG+ RVGD+++A +F M DRDVP+WN++IAGCTQNG F+ I FRRM E + R
Sbjct: 178 VSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECN---R 234
Query: 248 PNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRA 307
PN VT+VCALSA GH GMLQLG+ IHGYVY+NGL DSF+ NAL+DMYGKCGSL +AR+
Sbjct: 235 PNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKV 294
Query: 308 FDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367
F+ N +K LTSWNSMIN FALHGQS+++I +FE+M+ +RPD VTF+ LLNACTHG
Sbjct: 295 FEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGG-GVRPDEVTFVGLLNACTHG 353
Query: 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS 427
GLVE+G YF++M + Y IEPQIEHYGCL+DLLGRAGRF+EA++VVKGM +EPDEVVWGS
Sbjct: 354 GLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGS 413
Query: 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487
LLNGCK++GRTD AEFA KKLIEIDP+NGGY IMLAN+YGELGKWDEVR V + LK + +
Sbjct: 414 LLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQKS 473
Query: 488 YKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVAL 528
YK PGCSWIEVD QVHQF+SLDK++P+TE++Y LES+V
Sbjct: 474 YKVPGCSWIEVDDQVHQFYSLDKSNPKTEDLYIVLESLVGF 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350 gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana] gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana] gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/520 (60%), Positives = 403/520 (77%), Gaps = 3/520 (0%)
Query: 10 QTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIF 69
Q LNQ + A++ + H+NHLKQ+QSF+ G S ++F FKL+RFCTL+L NL+YARFIF
Sbjct: 21 QLLNQFISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIF 80
Query: 70 DHLTTPNTYLYTAMITAYASQ-PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL 128
D + PNT+LY A++TAY+S P HASSAFS +R MV R P+PN FIYP VLKS P +
Sbjct: 81 DRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLS 140
Query: 129 ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI 188
+ T +VHT + KSGF Y VV+TAL++SY+ S + I +AR+LFDEMS+RNVVSWTAM+
Sbjct: 141 SAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAML 200
Query: 189 SGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP 248
SGY R GDI NA +LF+ MP+RDVP+WN+++A CTQNGLF +A+S FRRM E S IRP
Sbjct: 201 SGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPS--IRP 258
Query: 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308
N+VT+VC LSA TG LQL K IH + YR L D F+SN+L+D+YGKCG+L+EA F
Sbjct: 259 NEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVF 318
Query: 309 DRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG 368
SKK LT+WNSMIN FALHG+SE +I VFEEMM+ ++I+PD +TFI LLNACTHGG
Sbjct: 319 KMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGG 378
Query: 369 LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSL 428
LV +GR YF LMT + IEP+IEHYGCL+DLLGRAGRF+EALEV+ MK++ DE +WGSL
Sbjct: 379 LVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSL 438
Query: 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488
LN CKI+G D AE AVK L+ ++PNNGGY M+AN+YGE+G W+E R+ RKM+K +NAY
Sbjct: 439 LNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAY 498
Query: 489 KTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVAL 528
K PG S IE+D +VHQF+SLDK+HP TEEIY L+S+++
Sbjct: 499 KPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSLISF 538
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula] gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/525 (61%), Positives = 404/525 (76%), Gaps = 15/525 (2%)
Query: 8 LNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARF 67
+ + LN+ V IL + NH+N LKQLQS LTTLG SQT+FYAFKL+RFC+L LSNL YA
Sbjct: 1 MKRNLNELVTTILTKINHLNQLKQLQSHLTTLGHSQTHFYAFKLIRFCSLNLSNLHYAHQ 60
Query: 68 IFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127
IF+H+ +PN YL+TA+ITA++SQ + F L++ M+ +PN FIYPHVLKS V
Sbjct: 61 IFNHIHSPNIYLFTAIITAFSSQ---QHTTFKLFKTMLNS-NIRPNNFIYPHVLKS---V 113
Query: 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAM 187
E +VH QIVK GF YPVVET+LV+SYS+ + A K+FDEMS+RN+V +T +
Sbjct: 114 KERFLVDLVHAQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVL 173
Query: 188 ISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS---- 243
+SGY RVGD++ +FD M DRDVPAWN+VI+GCTQNG FS+ I FR M
Sbjct: 174 VSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEG 233
Query: 244 ---DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS 300
+PNQVT+VC LSA GH GMLQLGK IHGYVYR+G +DSF+SNAL+DMYGKCGS
Sbjct: 234 GFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGS 293
Query: 301 LKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISL 360
L+ AR+ F+ + +K LTSWNSMIN +ALHG+ E++I FE+M+ C +RPD VTFI L
Sbjct: 294 LELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGG-GVRPDEVTFIGL 352
Query: 361 LNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP 420
LNACTHGGLVEQG YF++M K Y IEPQI HYGCL+DLLGRAG+F+EA++VVKGM +EP
Sbjct: 353 LNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEP 412
Query: 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRK 480
DEVVWGSLLNGCK++GRTD AEFA KKL+EIDP+NGGYG MLANIYG+LGKWDE+R V
Sbjct: 413 DEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVWS 472
Query: 481 MLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525
LK + +YK PGCSWIEVD +VHQF SLD+++P+TEE+Y+ LES+
Sbjct: 473 KLKQQKSYKIPGCSWIEVDDKVHQFFSLDQSNPKTEELYNILESL 517
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/495 (60%), Positives = 379/495 (76%), Gaps = 5/495 (1%)
Query: 10 QTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIF 69
+ +NQ + A + + H+NHLKQ+QSFL G S ++F FKL+RFCTL+L NL+YARFIF
Sbjct: 21 ELVNQFISAAISKSRHLNHLKQVQSFLIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIF 80
Query: 70 DHLTTPNTYLYTAMITAYASQ-PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL 128
D + PNT+LY A++T Y+S P HASSAFS +R MV R P+PN FIYP VLKS P +
Sbjct: 81 DRFSFPNTHLYAAVLTGYSSSLPLHASSAFSFFRLMVNRSFPRPNHFIYPLVLKSTPYLS 140
Query: 129 ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI 188
+ T +VHT + KSGF Y VV+TAL++SY+ S + I +AR+LFDEMS+RNVVSWTAM+
Sbjct: 141 SAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAML 200
Query: 189 SGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDN-IR 247
SGY R GDI NA +LF+ MP+RDVP+WN+++A CTQNGLF +A+S FRRM ++D IR
Sbjct: 201 SGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRM---INDPCIR 257
Query: 248 PNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRA 307
PN+VTLVC LSA TG LQL K IH + YR L D F+SN+L+D+YGKCG+L+EA
Sbjct: 258 PNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSV 317
Query: 308 FDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367
F +SKK LT+WNSMIN FALHG+SE +I VFE+MM+ H+I+PD +TFI LLNACTHG
Sbjct: 318 FKMSSKKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHDIKPDHITFIGLLNACTHG 377
Query: 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS 427
GLV +GR YF LM K + IEP+IEHYGCL+DLLGRAG+F+EALE + MK+E DE +WGS
Sbjct: 378 GLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDEALETMSTMKMEADEAIWGS 437
Query: 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487
LLN CK YG D AE AVK L+ ++PNNGGY M+AN+YGE+G W+E R+ RKM+K +NA
Sbjct: 438 LLNACKKYGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNA 497
Query: 488 YKTPGCSWIEVDKQV 502
YK PG S IE+D ++
Sbjct: 498 YKPPGWSQIEIDNKL 512
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/515 (51%), Positives = 362/515 (70%), Gaps = 12/515 (2%)
Query: 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPN 76
+A+L RC + HLKQL ++ + F+L+RF +L+LS L YAR +FD PN
Sbjct: 13 VAVLSRCATLAHLKQLHGRSVVTARAASQSTTFQLLRFASLRLSCLPYARRLFDSTPHPN 72
Query: 77 TYLYTAMITAYASQPAH---ASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGT 133
+LY+AM++AYA+ A +L+ M+RRG+P PNQF+YP VL++ + +
Sbjct: 73 VFLYSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVLRAAC-AIGVQLV 131
Query: 134 KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTR 193
+ +H+ KSGF Y V+ T+L++ YSR G + ARKLFD +++RNV+SWTA++SGY R
Sbjct: 132 RSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLD-ARKLFDGLTERNVISWTALVSGYAR 190
Query: 194 VGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTL 253
G I +A LFD MP+RDV AWN++I GCTQNGLF +A+ RM V + + N T+
Sbjct: 191 AGKIGDAIVLFDRMPERDVAAWNAMITGCTQNGLFVEAVGICSRM---VDEGFQLNGTTV 247
Query: 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK 313
C LSA GH GML++GKV+HGY +R+ + S + N LIDMYGKCG+LKEAR FD S
Sbjct: 248 SCVLSACGHLGMLKIGKVVHGYAWRSCVGFGSSVVNGLIDMYGKCGNLKEARWMFDEFSD 307
Query: 314 KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373
+ LT+WNS+IN ALHG S+++I VF+EM +D I PD VTF+ LLNACTHGG V++G
Sbjct: 308 RSLTTWNSLINCLALHGHSKSAIAVFDEM---RDEGIEPDVVTFVGLLNACTHGGFVDEG 364
Query: 374 RAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCK 433
YFKLM RIEP+IEHYGC+VDLLGRAGRFE+A+ V+ MK++PDEV+WGSLLN C+
Sbjct: 365 LTYFKLMCDELRIEPEIEHYGCIVDLLGRAGRFEDAMNVINDMKVQPDEVIWGSLLNACR 424
Query: 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK-DRNAYKTPG 492
+ + + AEF+V+KL++++PNN Y +MLAN+Y E G W+EV K+RK++K D K PG
Sbjct: 425 THRQLELAEFSVRKLLQLNPNNANYVVMLANLYSEGGSWEEVTKIRKLMKEDIMGKKLPG 484
Query: 493 CSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527
CSWIEVD++ H+F+S D HP +E+IYD L+ + A
Sbjct: 485 CSWIEVDRKTHRFYSGDDAHPESEDIYDTLDELAA 519
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/515 (50%), Positives = 360/515 (69%), Gaps = 13/515 (2%)
Query: 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPN 76
+A L RC + HLKQL + G++ F L+RF +L+LS L YAR +FD +PN
Sbjct: 232 VAALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYARRLFDATPSPN 291
Query: 77 TYLYTAMITAYASQPA----HASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRG 132
+LY+AM++AYA+ + HA + +L+ M+RRG+P PNQF+YP VL++ + +
Sbjct: 292 VFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAAC-AIGVQL 350
Query: 133 TKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYT 192
+ +H K GF + + T+L++ YSR G +G ARKLFD ++DRNVVSWTA++SGY
Sbjct: 351 VRSIHCHACKDGFYGHDFIRTSLLDGYSRYGM-MGDARKLFDGLTDRNVVSWTALVSGYA 409
Query: 193 RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252
R G + +A LF+ MP RDVPAWN++IAGCTQNGLF +A+ FRRM V + RPN T
Sbjct: 410 RAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRM---VDEGFRPNGTT 466
Query: 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS 312
+ C LSA GH GML++GKVIHGY +R+ + S + N LIDMYGKCG+L EA+ FD S
Sbjct: 467 VSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFS 526
Query: 313 KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372
+ LT+WNS+IN ALHG SE++I VF M ++ ++PD VTF+ LLNACTHGG V++
Sbjct: 527 DRGLTTWNSLINCLALHGCSESAIAVFNSM---RNEGVQPDEVTFVGLLNACTHGGFVDE 583
Query: 373 GRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGC 432
G YF+LM + IEP+IEHYGC+VDLL RAGRF++A+ + MK++PDEV+WGSLLN C
Sbjct: 584 GLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNAC 643
Query: 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK-DRNAYKTP 491
+I+ + AE A++ L++++P+N Y +MLAN+Y E G W+EVRKVRK++K D K P
Sbjct: 644 RIHRHLELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLP 703
Query: 492 GCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMV 526
GCSWIEVD++ +F+S D HP +E+IYD L+ +
Sbjct: 704 GCSWIEVDRKTRRFYSGDDGHPESEDIYDTLDKLA 738
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group] gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/515 (50%), Positives = 360/515 (69%), Gaps = 13/515 (2%)
Query: 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPN 76
+A L RC + HLKQL + G++ F L+RF +L+LS L YAR +FD +PN
Sbjct: 14 VAALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYARRLFDATPSPN 73
Query: 77 TYLYTAMITAYASQPA----HASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRG 132
+LY+AM++AYA+ + HA + +L+ M+RRG+P PNQF+YP VL++ + +
Sbjct: 74 VFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAAC-AIGVQL 132
Query: 133 TKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYT 192
+ +H K GF + + T+L++ YSR G +G ARKLFD ++DRNVVSWTA++SGY
Sbjct: 133 VRSIHCHACKDGFYGHDFIRTSLLDGYSRYGM-MGDARKLFDGLTDRNVVSWTALVSGYA 191
Query: 193 RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252
R G + +A LF+ MP RDVPAWN++IAGCTQNGLF +A+ FRRM V + RPN T
Sbjct: 192 RAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRM---VDEGFRPNGTT 248
Query: 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS 312
+ C LSA GH GML++GKVIHGY +R+ + S + N LIDMYGKCG+L EA+ FD S
Sbjct: 249 VSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFS 308
Query: 313 KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372
+ LT+WNS+IN ALHG SE++I VF M ++ ++PD VTF+ LLNACTHGG V++
Sbjct: 309 DRGLTTWNSLINCLALHGCSESAIAVFNSM---RNEGVQPDEVTFVGLLNACTHGGFVDE 365
Query: 373 GRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGC 432
G YF+LM + IEP+IEHYGC+VDLL RAGRF++A+ + MK++PDEV+WGSLLN C
Sbjct: 366 GLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNAC 425
Query: 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK-DRNAYKTP 491
+I+ + AE A++ L++++P+N Y +MLAN+Y E G W+EVRKVRK++K D K P
Sbjct: 426 RIHRHLELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLP 485
Query: 492 GCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMV 526
GCSWIEVD++ +F+S D HP +E+IYD L+ +
Sbjct: 486 GCSWIEVDRKTRRFYSGDDGHPESEDIYDTLDKLA 520
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor] gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/529 (49%), Positives = 359/529 (67%), Gaps = 19/529 (3%)
Query: 10 QTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIF 69
Q ++ +A+L RC+ HL+QL + G++ F L+RF +LS LTYAR +F
Sbjct: 6 QLSHRDFVAVLSRCSTRAHLEQLHAHAFVAGRAAAQTTTFHLIRFAAFRLSCLTYARHLF 65
Query: 70 DHLTTPNTYLYTAMITAYASQPAHASSAFS----------LYRDMVRRGQPQPNQFIYPH 119
D P+ +LY+A+++AY S A ASS L+ M+R G+P PNQF+YP
Sbjct: 66 DATPHPSVFLYSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRHGRPAPNQFVYPL 125
Query: 120 VLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR 179
VL++ V K +H+ KSGF + ++ T++++ YSR G + ARKLFD +++R
Sbjct: 126 VLRAASGVGVGI-VKSIHSHACKSGFCGHDIIRTSVLDGYSRHGM-MADARKLFDGLTER 183
Query: 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239
NVVSWTA++SGY R G + +A LF+ MP+RDV AWN++IAGC+QNGLF +A+ F RM
Sbjct: 184 NVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGRM- 242
Query: 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG 299
V RPN T+ C LSA GH GML++GK+IH Y +R + S + N LIDMYGKCG
Sbjct: 243 --VGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNGLIDMYGKCG 300
Query: 300 SLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359
+L+ AR FD S + LT+WNS+IN ALHG S+ +I VF EM + + PD VTF+
Sbjct: 301 NLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEM---RGEGVEPDVVTFVG 357
Query: 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIE 419
LLNACTHGG V++G YF+LM + IEP+IEHYGC++DLLGRAGRF++AL V+ M+IE
Sbjct: 358 LLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAGRFQDALNVISDMRIE 417
Query: 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVR 479
DEV+WGSLLN C+++ + +FAE A++KL+E+DPNN Y +MLAN+Y E G W+EVRKVR
Sbjct: 418 ADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVMLANVYSEGGLWEEVRKVR 477
Query: 480 KMLKDRN-AYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527
K +K+ N K PGCSWIEVD++ H+F+S D HP +E IYD LE + A
Sbjct: 478 KFVKEENIGKKLPGCSWIEVDRKTHRFYSGDDAHPESENIYDTLEDLAA 526
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | ||||||
| TAIR|locus:2006927 | 538 | AT1G33350 [Arabidopsis thalian | 0.960 | 0.944 | 0.612 | 5.3e-175 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.935 | 0.926 | 0.380 | 7.1e-100 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.916 | 0.949 | 0.390 | 6.6e-97 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.939 | 0.769 | 0.367 | 3.5e-91 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.931 | 0.930 | 0.375 | 5.1e-90 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.633 | 0.422 | 0.422 | 3.9e-89 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.926 | 0.790 | 0.355 | 3.2e-88 | |
| TAIR|locus:2011892 | 596 | AT1G50270 "AT1G50270" [Arabido | 0.633 | 0.562 | 0.365 | 3.9e-87 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.844 | 0.707 | 0.382 | 4.7e-87 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.871 | 0.586 | 0.375 | 3.8e-85 |
| TAIR|locus:2006927 AT1G33350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1700 (603.5 bits), Expect = 5.3e-175, P = 5.3e-175
Identities = 313/511 (61%), Positives = 398/511 (77%)
Query: 18 AILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNT 77
A++ + H+NHLKQ+QSF+ G S ++F FKL+RFCTL+L NL+YARFIFD + PNT
Sbjct: 29 AVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFPNT 88
Query: 78 YLYTAMITAYASQ-PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136
+LY A++TAY+S P HASSAFS +R MV R P+PN FIYP VLKS P + + T +V
Sbjct: 89 HLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLV 148
Query: 137 HTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGD 196
HT + KSGF Y VV+TAL++SY+ S + I +AR+LFDEMS+RNVVSWTAM+SGY R GD
Sbjct: 149 HTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGD 208
Query: 197 IKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256
I NA +LF+ MP+RDVP+WN+++A CTQNGLF +A+S FRRM E S IRPN+VT+VC
Sbjct: 209 ISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPS--IRPNEVTVVCV 266
Query: 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL 316
LSA TG LQL K IH + YR L D F+SN+L+D+YGKCG+L+EA F SKK L
Sbjct: 267 LSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSL 326
Query: 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAY 376
T+WNSMIN FALHG+SE +I VFEEMM+ ++I+PD +TFI LLNACTHGGLV +GR Y
Sbjct: 327 TAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGY 386
Query: 377 FKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYG 436
F LMT + IEP+IEHYGCL+DLLGRAGRF+EALEV+ MK++ DE +WGSLLN CKI+G
Sbjct: 387 FDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHG 446
Query: 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWI 496
D AE AVK L+ ++PNNGGY M+AN+YGE+G W+E R+ RKM+K +NAYK PG S I
Sbjct: 447 HLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRI 506
Query: 497 EVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527
E+D +VHQF+SLDK+HP TEEIY L+S+++
Sbjct: 507 EIDNEVHQFYSLDKSHPETEEIYMILDSLIS 537
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 192/504 (38%), Positives = 312/504 (61%)
Query: 20 LERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYL 79
L+R N K++ + + G SQ++F K+V FC K+ ++ YA +F+ ++ PN +L
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCD-KIEDMDYATRLFNQVSNPNVFL 75
Query: 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQ 139
Y ++I AY + +Y+ ++R+ P++F +P + KSC + K VH
Sbjct: 76 YNSIIRAYTHNSLYCD-VIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGH 134
Query: 140 IVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKN 199
+ K G + V E AL++ Y + +D+ A K+FDEM +R+V+SW +++SGY R+G +K
Sbjct: 135 LCKFGPRFHVVTENALIDMYMKF-DDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKK 193
Query: 200 AASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSA 259
A LF M D+ + +W ++I+G T G + +A+ FFR M + I P++++L+ L +
Sbjct: 194 AKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA---GIEPDEISLISVLPS 250
Query: 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSW 319
G L+LGK IH Y R G + + NALI+MY KCG + +A + F + K + SW
Sbjct: 251 CAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISW 310
Query: 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379
++MI+ +A HG + +I F EM R + ++P+G+TF+ LL+AC+H G+ ++G YF +
Sbjct: 311 STMISGYAYHGNAHGAIETFNEMQRAK---VKPNGITFLGLLSACSHVGMWQEGLRYFDM 367
Query: 380 MTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTD 439
M + Y+IEP+IEHYGCL+D+L RAG+ E A+E+ K M ++PD +WGSLL+ C+ G D
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427
Query: 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVD 499
A A+ L+E++P + G ++LANIY +LGKW++V ++RKM+++ N KTPG S IEV+
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487
Query: 500 KQVHQFHSLDKTHPRTEEIYDALE 523
V +F S D + P EI L+
Sbjct: 488 NIVQEFVSGDNSKPFWTEISIVLQ 511
|
|
| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 197/504 (39%), Positives = 305/504 (60%)
Query: 26 INHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMIT 85
+N +KQL + G +T +L L + NL YAR +FDH T+LY +I
Sbjct: 1 MNGIKQLHAHCLRTGVDETKDLLQRL-----LLIPNLVYARKLFDHHQNSCTFLYNKLIQ 55
Query: 86 AYA--SQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKS 143
AY QP H S LY + G +P+ + + + +R +++H+Q +S
Sbjct: 56 AYYVHHQP-HESIV--LYNLLSFDGL-RPSHHTFNFIFAASASFSSARPLRLLHSQFFRS 111
Query: 144 GFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASL 203
GFE T L+ +Y++ G + AR++FDEMS R+V W AMI+GY R GD+K A L
Sbjct: 112 GFESDSFCCTTLITAYAKLGA-LCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMEL 170
Query: 204 FDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHT 263
FDSMP ++V +W +VI+G +QNG +S+A+ F + ME +++PN +T+V L A +
Sbjct: 171 FDSMPRKNVTSWTTVISGFSQNGNYSEALKMF--LCMEKDKSVKPNHITVVSVLPACANL 228
Query: 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDR-NSKKRLTSWNSM 322
G L++G+ + GY NG + ++ NA I+MY KCG + A+R F+ +++ L SWNSM
Sbjct: 229 GELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSM 288
Query: 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK 382
I S A HG+ + ++ +F +M+R +PD VTF+ LL AC HGG+V +G+ FK M +
Sbjct: 289 IGSLATHGKHDEALTLFAQMLR---EGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEE 345
Query: 383 TYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAE 442
++I P++EHYGC++DLLGR G+ +EA +++K M ++PD VVWG+LL C +G + AE
Sbjct: 346 VHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAE 405
Query: 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW-IEVDKQ 501
A + L +++P N G ++++NIY KWD V ++RK++K K G S+ +EV
Sbjct: 406 IASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVD 465
Query: 502 VHQFHSLDKTHPRTEEIYDALESM 525
VH+F DK+HPR+ EIY LE +
Sbjct: 466 VHKFTVEDKSHPRSYEIYQVLEEI 489
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 191/520 (36%), Positives = 298/520 (57%)
Query: 20 LERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCT---LKLSNLTYARFIFDHLTTPN 76
+ C I L Q+ + GQ + A +++RFC L +L YA IF+ + N
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 77 TYLYTAMITAYA-SQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKM 135
+ + +I ++ S A A +L+ +M+ +PN+F +P VLK+C + + K
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 136 VHTQIVKSGFEQYPVVETALVNSYSRSG--NDIGIA--RKLFDE----MSDRN-----VV 182
+H +K GF V + LV Y G D + + + ++ M+DR +V
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209
Query: 183 SWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEV 242
W MI GY R+GD K A LFD M R V +WN++I+G + NG F DA+ FR M
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK--- 266
Query: 243 SDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLK 302
+IRPN VTLV L AI G L+LG+ +H Y +G+ +D + +ALIDMY KCG ++
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326
Query: 303 EARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN 362
+A F+R ++ + +W++MIN FA+HGQ+ ++I F +M + +RP V +I+LL
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA---GVRPSDVAYINLLT 383
Query: 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDE 422
AC+HGGLVE+GR YF M +EP+IEHYGC+VDLLGR+G +EA E + M I+PD+
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482
V+W +LL C++ G + + L+++ P++ G + L+N+Y G W EV ++R +
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRM 503
Query: 483 KDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDAL 522
K+++ K PGCS I++D +H+F D +HP+ +EI L
Sbjct: 504 KEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSML 543
|
|
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 190/506 (37%), Positives = 297/506 (58%)
Query: 24 NHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAM 83
N++ LKQ ++ G ++ N K + C+ +L YA +F H PNTYL+ M
Sbjct: 26 NNLKTLKQSHCYMIITGLNRDNLNVAKFIEACS-NAGHLRYAYSVFTHQPCPNTYLHNTM 84
Query: 84 ITAYA--SQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIV 141
I A + +P S A ++YR + +P+ F +P VLK V + + +H Q+V
Sbjct: 85 IRALSLLDEPNAHSIAITVYRKLWALCA-KPDTFTFPFVLKIAVRVSDVWFGRQIHGQVV 143
Query: 142 KSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAA 201
GF+ V T L+ Y G +G ARK+FDEM ++V W A+++GY +VG++ A
Sbjct: 144 VFGFDSSVHVVTGLIQMYFSCGG-LGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEAR 202
Query: 202 SLFDSMPD--RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSA 259
SL + MP R+ +W VI+G ++G S+AI F+RM ME N+ P++VTL+ LSA
Sbjct: 203 SLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLME---NVEPDEVTLLAVLSA 259
Query: 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSW 319
G L+LG+ I YV G++ ++NA+IDMY K G++ +A F+ +++ + +W
Sbjct: 260 CADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTW 319
Query: 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379
++I A HG ++ +F M++ +RP+ VTFI++L+AC+H G V+ G+ F
Sbjct: 320 TTIIAGLATHGHGAEALAMFNRMVKA---GVRPNDVTFIAILSACSHVGWVDLGKRLFNS 376
Query: 380 MTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTD 439
M Y I P IEHYGC++DLLGRAG+ EA EV+K M + + +WGSLL ++ +
Sbjct: 377 MRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLE 436
Query: 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVD 499
E A+ +LI+++PNN G ++LAN+Y LG+WDE R +R M+K K G S IEV+
Sbjct: 437 LGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVE 496
Query: 500 KQVHQFHSLDKTHPRTEEIYDALESM 525
+V++F S D THP+ E I++ L+ M
Sbjct: 497 NRVYKFISGDLTHPQVERIHEILQEM 522
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 144/341 (42%), Positives = 214/341 (62%)
Query: 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD 244
TA+ + Y+++ +I++A LFD P++ +P+WN++I+G TQNGL DAIS FR M + S+
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM--QKSE 415
Query: 245 NIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEA 304
PN VT+ C LSA G L LGK +H V + ++S ALI MY KCGS+ EA
Sbjct: 416 -FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEA 474
Query: 305 RRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364
RR FD +KK +WN+MI+ + LHGQ + ++ +F EM+ + I P VTF+ +L AC
Sbjct: 475 RRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEML---NSGITPTPVTFLCVLYAC 531
Query: 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVV 424
+H GLV++G F M Y EP ++HY C+VD+LGRAG + AL+ ++ M IEP V
Sbjct: 532 SHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV 591
Query: 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484
W +LL C+I+ T+ A +KL E+DP+N GY ++L+NI+ + + VR+ K
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKK 651
Query: 485 RNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525
R K PG + IE+ + H F S D++HP+ +EIY+ LE +
Sbjct: 652 RKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKL 692
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 178/501 (35%), Positives = 288/501 (57%)
Query: 20 LERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSN--LTYARFIFDHLTTPNT 77
L+RC+ LKQ+ + + G Q ++ K + FC S+ L YA+ +FD P+T
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 78 YLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVH 137
+L+ MI ++ S LY+ M+ P N + +P +LK+C ++ T +H
Sbjct: 81 FLWNLMIRGFSCSDEPERSLL-LYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEETTQIH 138
Query: 138 TQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDI 197
QI K G+E +L+NSY+ +GN +A LFD + + + VSW ++I GY + G +
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGN-FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197
Query: 198 KNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCAL 257
A +LF M +++ +W ++I+G Q + +A+ F M + SD + P+ V+L AL
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEM--QNSD-VEPDNVSLANAL 254
Query: 258 SAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLT 317
SA G L+ GK IH Y+ + + +DS + LIDMY KCG ++EA F KK +
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYF 377
+W ++I+ +A HG +I F EM Q I+P+ +TF ++L AC++ GLVE+G+ F
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEM---QKMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371
Query: 378 KLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGR 437
M + Y ++P IEHYGC+VDLLGRAG +EA ++ M ++P+ V+WG+LL C+I+
Sbjct: 372 YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKN 431
Query: 438 TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIE 497
+ E + LI IDP +GG + ANI+ KWD+ + R+++K++ K PGCS I
Sbjct: 432 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
Query: 498 VDKQVHQFHSLDKTHPRTEEI 518
++ H+F + D++HP E+I
Sbjct: 492 LEGTTHEFLAGDRSHPEIEKI 512
|
|
| TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 125/342 (36%), Positives = 207/342 (60%)
Query: 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD 244
++++ Y + +A +FD MP R+V W ++IAG Q+ F + F M +
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEM---LKS 300
Query: 245 NIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEA 304
++ PN+ TL LSA H G L G+ +H Y+ +N +++++ LID+Y KCG L+EA
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 305 RRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364
F+R +K + +W +MIN FA HG + ++ +F M+ H + P+ VTF+++L+AC
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTML--SSH-VSPNEVTFMAVLSAC 417
Query: 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVV 424
HGGLVE+GR F M + +EP+ +HY C+VDL GR G EEA +++ M +EP VV
Sbjct: 418 AHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVV 477
Query: 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484
WG+L C ++ + ++A ++I++ P++ G +LAN+Y E WDEV +VRK +KD
Sbjct: 478 WGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKD 537
Query: 485 RNAYKTPGCSWIEVDKQVHQFHSLDKTHP-RTEEIYDALESM 525
+ K+PG SWIEV ++ +F + D P ++++Y L+++
Sbjct: 538 QQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTV 579
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| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 175/458 (38%), Positives = 282/458 (61%)
Query: 68 IFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127
+F P+ +L+TA I AS AF LY ++ + PN+F + +LKSC
Sbjct: 86 LFHQTIDPDLFLFTAAINT-ASINGLKDQAFLLYVQLLS-SEINPNEFTFSSLLKSC--- 140
Query: 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAM 187
++ K++HT ++K G P V T LV+ Y++ G D+ A+K+FD M +R++VS TAM
Sbjct: 141 -STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGG-DVVSAQKVFDRMPERSLVSSTAM 198
Query: 188 ISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIR 247
I+ Y + G+++ A +LFDSM +RD+ +WN +I G Q+G +DA+ F+++ E +
Sbjct: 199 ITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKP--K 256
Query: 248 PNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRA 307
P+++T+V ALSA G L+ G+ IH +V + + L+ + LIDMY KCGSL+EA
Sbjct: 257 PDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLV 316
Query: 308 FDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367
F+ +K + +WN+MI +A+HG S++++ +F EM ++P +TFI L AC H
Sbjct: 317 FNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGIT--GLQPTDITFIGTLQACAHA 374
Query: 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS 427
GLV +G F+ M + Y I+P+IEHYGCLV LLGRAG+ + A E +K M ++ D V+W S
Sbjct: 375 GLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSS 434
Query: 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487
+L CK++G + + LI ++ N G ++L+NIY +G ++ V KVR ++K++
Sbjct: 435 VLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 494
Query: 488 YKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525
K PG S IE++ +VH+F + D+ H +++EIY L +
Sbjct: 495 VKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKI 532
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| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 177/472 (37%), Positives = 269/472 (56%)
Query: 57 LKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFI 116
+++ + A F+ + + + +MI+ + +Q + A ++ M+R P++F
Sbjct: 223 MQVGQMDLAMAQFEQMAERDIVTWNSMISGF-NQRGYDLRALDIFSKMLRDSLLSPDRFT 281
Query: 117 YPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEM 176
VL +C ++ + K +H+ IV +GF+ +V AL++ YSR G + AR+L ++
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG-VETARRLIEQR 340
Query: 177 S--DRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISF 234
D + +TA++ GY ++GD+ A ++F S+ DRDV AW ++I G Q+G + +AI+
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINL 400
Query: 235 FRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDM 294
FR M V RPN TL LS L GK IHG ++G +SNALI M
Sbjct: 401 FRSM---VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITM 457
Query: 295 YGKCGSLKEARRAFDRNSKKRLT-SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD 353
Y K G++ A RAFD +R T SW SMI + A HG +E ++ +FE M+ +RPD
Sbjct: 458 YAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLM---EGLRPD 514
Query: 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV 413
+T++ + +ACTH GLV QGR YF +M +I P + HY C+VDL GRAG +EA E +
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFI 574
Query: 414 KGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWD 473
+ M IEPD V WGSLL+ C+++ D + A ++L+ ++P N G LAN+Y GKW+
Sbjct: 575 EKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWE 634
Query: 474 EVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525
E K+RK +KD K G SWIEV +VH F D THP EIY ++ +
Sbjct: 635 EAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKI 686
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C501 | PPR70_ARATH | No assigned EC number | 0.6096 | 0.9773 | 0.9609 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00031951001 | SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (529 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 529 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-108 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-79 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-44 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-33 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 341 bits (877), Expect = e-108
Identities = 162/459 (35%), Positives = 241/459 (52%), Gaps = 42/459 (9%)
Query: 65 ARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSC 124
A +F + T + +TAMI+ Y A Y M + P++ VL +C
Sbjct: 342 AEKVFSRMETKDAVSWTAMISGYEKN-GLPDKALETYALMEQDNV-SPDEITIASVLSAC 399
Query: 125 PDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSW 184
+ + +H + G Y VV AL+ YS+
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-------------------- 439
Query: 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD 244
I A +F ++P++DV +W S+IAG N +A+ FFR+M + +
Sbjct: 440 ------------IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL-- 485
Query: 245 NIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEA 304
+PN VTL+ ALSA G L GK IH +V R G+ D F+ NAL+D+Y +CG + A
Sbjct: 486 --KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 305 RRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364
F+ + +K + SWN ++ + HG+ ++ +F M+ + PD VTFISLL AC
Sbjct: 544 WNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG---VNPDEVTFISLLCAC 599
Query: 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVV 424
+ G+V QG YF M + Y I P ++HY C+VDLLGRAG+ EA + M I PD V
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659
Query: 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484
WG+LLN C+I+ + E A + + E+DPN+ GY I+L N+Y + GKWDEV +VRK +++
Sbjct: 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719
Query: 485 RNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALE 523
PGCSW+EV +VH F + D++HP+ +EI LE
Sbjct: 720 NGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 8e-79
Identities = 146/483 (30%), Positives = 238/483 (49%), Gaps = 46/483 (9%)
Query: 47 YAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAY--ASQPAHASSAFSLYRDM 104
Y V +K L AR +FD + N + +I A AF+L+R+M
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY---REAFALFREM 215
Query: 105 VRRG-QPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163
G +P F+ +L++ + +R + +H ++K+G V AL++ YS+ G
Sbjct: 216 WEDGSDAEPRTFVV--MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 164 NDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCT 223
DI AR +FD M ++ V+W +M++GY G + A L+ M D V
Sbjct: 274 -DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---------I 323
Query: 224 QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL 283
FS I F R+ +L+ K H + R G L
Sbjct: 324 DQFTFSIMIRIFSRL-------------------------ALLEHAKQAHAGLIRTGFPL 358
Query: 284 DSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMM 343
D + AL+D+Y K G +++AR FDR +K L SWN++I + HG+ ++ +FE M+
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 344 RCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA 403
+ P+ VTF+++L+AC + GL EQG F+ M++ +RI+P+ HY C+++LLGR
Sbjct: 419 A---EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
Query: 404 GRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463
G +EA +++ +P +W +LL C+I+ + A +KL + P ++L
Sbjct: 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535
Query: 464 NIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALE 523
N+Y G+ E KV + LK + P C+WIEV KQ H F S D+ HP++ EIY L+
Sbjct: 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595
Query: 524 SMV 526
++
Sbjct: 596 ELM 598
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-44
Identities = 109/422 (25%), Positives = 190/422 (45%), Gaps = 48/422 (11%)
Query: 34 SFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAH 93
S +LG N VRF L +A ++F + + + + ++ YA +
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRF-----GELVHAWYVFGKMPERDLFSWNVLVGGYAKA-GY 167
Query: 94 ASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVET 153
A LY M+ G +P+ + +P VL++C + + + VH +V+ GFE V
Sbjct: 168 FDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226
Query: 154 ALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVP 213
AL+ Y + G D+ AR +FD M R+ +SW AMISGY
Sbjct: 227 ALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMISGY---------------------- 263
Query: 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273
+NG + + F M ++ P+ +T+ +SA G +LG+ +H
Sbjct: 264 ---------FENGECLEGLELFFTM---RELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 274 GYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSE 333
GYV + G +D + N+LI MY GS EA + F R K SW +MI+ + +G +
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371
Query: 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY 393
++ + M + N+ PD +T S+L+AC G ++ G +L + I +
Sbjct: 372 KALETYALM---EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA- 427
Query: 394 GCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI-EID 452
L+++ + ++ALEV + E D + W S++ G ++ R A ++++ +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486
Query: 453 PN 454
PN
Sbjct: 487 PN 488
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-33
Identities = 105/399 (26%), Positives = 169/399 (42%), Gaps = 48/399 (12%)
Query: 58 KLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY 117
K ++ AR +FD + + + AMI+ Y L+ M R P+
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFEN-GECLEGLELFFTM-RELSVDPDLMTI 291
Query: 118 PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177
V+ +C + + R + +H +VK+GF V +L+ Y G+ G A K+F M
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS-WGEAEKVFSRME 350
Query: 178 DRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRR 237
++ VSWTAMISGY + NGL A+ +
Sbjct: 351 TKDAVSWTAMISGYEK-------------------------------NGLPDKALETYAL 379
Query: 238 MGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK 297
M DN+ P+++T+ LSA G L +G +H R GL ++NALI+MY K
Sbjct: 380 MEQ---DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 298 CGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF 357
C + +A F +K + SW S+I L+ + ++ F +M+ ++P+ VT
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL----TLKPNSVTL 492
Query: 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY--GCLVDLLGRAGRFEEALEVVKG 415
I+ L+AC G + G+ ++ R + + L+DL R GR A
Sbjct: 493 IAALSACARIGALMCGK---EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549
Query: 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454
E D V W LL G +G+ A +++E N
Sbjct: 550 H--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 8e-22
Identities = 92/398 (23%), Positives = 161/398 (40%), Gaps = 85/398 (21%)
Query: 30 KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYAS 89
+QL + G F + L+ + K ++ AR +FD + T + +M+ YA
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYS-KCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 90 QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYP 149
++ A LY +M R +QF + +++ + K H ++++GF
Sbjct: 303 H-GYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 150 VVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPD 209
V TALV+ YS+ G + AR +FD M +N++SW A+I+GY
Sbjct: 361 VANTALVDLYSKWGR-MEDARNVFDRMPRKNLISWNALIAGY------------------ 401
Query: 210 RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLG 269
+G + A+ F RM +++ + PN VT + LSA ++G+ + G
Sbjct: 402 -------------GNHGRGTKAVEMFERM---IAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 270 KVIHGYVYRN-GLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFAL 328
I + N + + +I++ G+ G L EA +MI
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY---------------AMI----- 485
Query: 329 HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP 388
+ +P + +LL AC +E GR K Y + P
Sbjct: 486 -----------------RRAPFKPTVNMWAALLTACRIHKNLELGRL---AAEKLYGMGP 525
Query: 389 Q-IEHYGCLVDLLGRAGRFEEALEVV-----KGMKIEP 420
+ + +Y L++L +GR EA +VV KG+ + P
Sbjct: 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 5e-16
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 7/173 (4%)
Query: 270 KVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALH 329
K ++ +V +G + D ++ N ++ M+ KCG L +ARR FD ++ L SW ++I
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202
Query: 330 GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389
G + +F EM + TF+ +L A G G+ + KT +
Sbjct: 203 GNYREAFALFREMWEDGSD---AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
Query: 390 IEHYGC-LVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFA 441
C L+D+ + G E+A V GM E V W S+L G ++G ++ A
Sbjct: 260 --FVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 76/366 (20%), Positives = 155/366 (42%), Gaps = 31/366 (8%)
Query: 110 PQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIA 169
P + ++ C + G V + ++G + + T L+++ ++SG +
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDAM 491
Query: 170 RKLFDEMS----DRNVVSWTAMISGYTRVGDIKNAASLFDSM------PDRDVPAWNSVI 219
++F EM + NV ++ A+I G R G + A + M PDR V +N++I
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV--FNALI 549
Query: 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN 279
+ C Q+G A M E + I P+ +T+ + A + G + K ++ ++
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 280 GLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFAL---HGQSENSI 336
+ + ++ + G A +D KK + + + S AL G + +
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFS-ALVDVAGHAGDLD 666
Query: 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCL 396
FE + + I+ V++ SL+ AC++ ++ ++ + K+ ++ P + L
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNAL 725
Query: 397 VDLLGRAGRFEEALEVVKGMK---IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE--- 450
+ L + +ALEV+ MK + P+ + + LL + R D A+ + L +
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE---RKDDADVGLDLLSQAKE 782
Query: 451 --IDPN 454
I PN
Sbjct: 783 DGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 50/234 (21%), Positives = 98/234 (41%), Gaps = 53/234 (22%)
Query: 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQ 346
+ NA++ M+ + G L A F + ++ L SWN ++ +A G + ++C++ M+
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA- 181
Query: 347 DHNIRPDGVTFISLLNACTHGGLVE--QGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR-- 402
+RPD TF +L C GG+ + +GR + + + E ++ L+ + +
Sbjct: 182 --GVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCG 236
Query: 403 ------------------------AGRFE-----EALEV---VKGMKIEPDEVVWGSLLN 430
+G FE E LE+ ++ + ++PD + S+++
Sbjct: 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 431 GCKIYGRTDFAE----FAVKK--LIEIDPNNGGYGIMLANIYGELGKWDEVRKV 478
C++ G + VK +++ N L +Y LG W E KV
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNS-----LIQMYLSLGSWGEAEKV 345
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 299 GSLKEARR--AFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT 356
++KEA R RN L+++N M+ S S++ + Q+ ++ D
Sbjct: 420 RAVKEAFRFAKLIRNPT--LSTFN-MLMSVCAS--SQDIDGALRVLRLVQEAGLKADCKL 474
Query: 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEAL---EVV 413
+ +L++ C G V+ F M +E + +G L+D RAG+ +A ++
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 414 KGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE-------IDPNNGGYG-IMLANI 465
+ ++PD VV+ +L++ C G D A F V L E IDP++ G +M A
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRA-FDV--LAEMKAETHPIDPDHITVGALMKACA 590
Query: 466 YGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEV 498
G+ D ++V +M+ + N TP I V
Sbjct: 591 NA--GQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364
++N++I+ + G+ E ++ +F EM + I+P+ T+ L++
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEM---KKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 54/297 (18%), Positives = 111/297 (37%), Gaps = 50/297 (16%)
Query: 75 PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQP-QPNQFIYPHVLKSCPDVLESRGT 133
P+ ++ A+I+A Q AF + +M P P+ ++K+C + +
Sbjct: 540 PDRVVFNALISA-CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 134 KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNV----VSWTAMIS 189
K V+ I + + P V T VNS S+ G D A ++D+M + V V ++A++
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKG-DWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 190 GYTRVGDIKNAASLFDSMPDRDVP----AWNSVIAGCTQNGLFSDAISFFRRM------- 238
GD+ A + + + +++S++ C+ + A+ + +
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 239 --------------------GMEVSDNIR-----PNQVTLVCALSAIGHTGMLQLGKVIH 273
+EV ++ PN +T L A +G +
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 274 GYVYRNGLDLDSFISNALIDM----YGKCGSLKEARRAFDRN---SKKRLTSWNSMI 323
+G+ + + + + + K +L E +FD + + TSW M+
Sbjct: 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVP----AWNSVIAGC 222
+VV++ +I GY + G ++ A LF+ M R + ++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252
DV +N++I G + G +A+ F M I+PN T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM---KKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 182 VSWTAMISGYTRVGDIKNAASLFDSMPDRDV 212
V++ ++ISGY + G ++ A LF M ++ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 393 YGCLVDLLGRAGRFEEALEVVKGMK---IEPDEVVWGSLLNGC 432
Y L+D + G+ EEAL++ MK I+P+ + L++G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 75 PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY 117
P+ Y +I Y + A L+ +M +RG +PN + Y
Sbjct: 1 PDVVTYNTLIDGYCKK-GKVEEALKLFNEMKKRGI-KPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 180 NVVSWTAMISGYTRVGDIKNAASLFDSMP 208
+VV++ +I G R G + A L D M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 393 YGCLVDLLGRAGRFEEALEVVKGMK---IEPDE 422
Y L+D L +AGR EEALE+ K MK IEPD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 153 TALVNSYSRSGNDIGIARKLFDEMSDR----NVVSWTAMISGY 191
L++ Y + G + A KLF+EM R NV +++ +I G
Sbjct: 7 NTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 214 AWNSVIAGCTQNGLFSDAISFFRRM 238
+NS+I+G + G +A+ F+ M
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 182 VSWTAMISGYTRVGDIKNAASLFDSMPDRDV 212
V++ +I G + G ++ A LF M +R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN 249
+N++I G + G +A+ F+ M I P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEM---KERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.12 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.11 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.11 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.04 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.04 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.89 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.85 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.83 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.83 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.79 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.71 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.61 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.51 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.47 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.13 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.94 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.92 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.67 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.67 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.5 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.4 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.4 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.35 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.31 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.18 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.07 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.02 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.97 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.77 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.75 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.65 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.64 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.62 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.62 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.59 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.39 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.11 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.99 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.89 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.86 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.84 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.54 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.51 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.5 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.47 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.39 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.34 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.14 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.99 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.88 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.52 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.47 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.16 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.16 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.98 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.89 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.88 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.43 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.39 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.39 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.09 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.09 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.89 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.66 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.56 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.54 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.51 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.34 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.28 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.2 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.91 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.77 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.45 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.4 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.38 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 90.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.15 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.15 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 90.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.88 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.78 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.71 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.31 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.83 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.73 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.73 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.65 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.55 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.35 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.23 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.89 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.83 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.74 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.45 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.28 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.18 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.98 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 86.68 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 86.54 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.29 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.11 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.85 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.54 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.0 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.95 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.59 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.36 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.02 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.36 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.99 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.9 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.66 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.34 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.21 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 82.16 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.11 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 81.69 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.38 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.05 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.46 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=606.10 Aligned_cols=507 Identities=36% Similarity=0.672 Sum_probs=467.5
Q ss_pred ccccHHHHHHHHHHccCc---chHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHH
Q 009663 9 NQTLNQQVLAILERCNHI---NHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMIT 85 (529)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 85 (529)
-.|+..++..+++.|+.. ..+.++|..+.+.|+.|++.+++.||.+|++.| +++.|.++|++|+.+|..+||++|.
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCCCCCcchhHHHHH
Confidence 346677777777777644 556789999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC
Q 009663 86 AYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND 165 (529)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 165 (529)
+|++. |++++|+++|++|.+.|+ .||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.| +
T Consensus 262 ~~~~~-g~~~eAl~lf~~M~~~g~-~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~ 338 (857)
T PLN03077 262 GYFEN-GECLEGLELFFTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG-S 338 (857)
T ss_pred HHHhC-CCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-C
Confidence 99999 999999999999999998 99999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC--------------------------------------
Q 009663 166 IGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSM-------------------------------------- 207 (529)
Q Consensus 166 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-------------------------------------- 207 (529)
+++|.++|++|..||..+|+.++.+|++.|++++|.++|++|
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 999999999998888888888887777777766666666665
Q ss_pred --------------------------------CCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHH
Q 009663 208 --------------------------------PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVC 255 (529)
Q Consensus 208 --------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ 255 (529)
.++|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~----~~~pd~~t~~~ 494 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL----TLKPNSVTLIA 494 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh----CCCCCHhHHHH
Confidence 334555566666666666666666666666642 57899999999
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENS 335 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 335 (529)
++.+|++.|.++.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 336 ICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 336 ~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
+++|++|.+ .|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 574 ~~lf~~M~~---~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 574 VELFNRMVE---SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHH---cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999998 99999999999999999999999999999999997779999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 416 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
|++.||..+|++|+.+|..+|+.+.+....+++.++.|++...|..+++.|...|+|++|.++.+.|+++|++++|++||
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEEeeCCCCCCChHHHHHHHHHHHh
Q 009663 496 IEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527 (529)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
+++++..|.|+.+++.||+.++|+..+++|.+
T Consensus 731 ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 762 (857)
T PLN03077 731 VEVKGKVHAFLTDDESHPQIKEINTVLEGFYE 762 (857)
T ss_pred EEECCEEEEEecCCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999998887654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-73 Score=580.64 Aligned_cols=502 Identities=27% Similarity=0.497 Sum_probs=482.1
Q ss_pred cHHHHHHHHHHccCcchHHHHHHHHHHhC-CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHH
Q 009663 12 LNQQVLAILERCNHINHLKQLQSFLTTLG-QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITA 86 (529)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~ 86 (529)
.....+..+...++..++.++++.|...+ +.||..+|+.++.+|++.+ +++.|.+++..+. .||..+||.++..
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALK-SIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 33455556667789999999999998865 7899999999999999999 9999999999886 6899999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH
Q 009663 87 YASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI 166 (529)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 166 (529)
|++. |+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.| +.
T Consensus 168 y~k~-g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~-~~ 240 (697)
T PLN03081 168 HVKC-GMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SA 240 (697)
T ss_pred HhcC-CCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC-cH
Confidence 9999 99999999999994 68999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcc
Q 009663 167 GIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEV 242 (529)
Q Consensus 167 ~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 242 (529)
+.+.+++..+.+ +|..+|++++.+|++.|++++|.++|++|.++|+.+||.||.+|++.|++++|+++|++|...
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~- 319 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS- 319 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 999999887764 899999999999999999999999999999999999999999999999999999999999877
Q ss_pred cCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHH
Q 009663 243 SDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSM 322 (529)
Q Consensus 243 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 322 (529)
|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.++|+.+|++|
T Consensus 320 --g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 320 --GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred --CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
|.+|++.|+.++|+++|++|.+ .|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIA---EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 9999999999999999999998 9999999999999999999999999999999999878999999999999999999
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 403 AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 403 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.|++++|.+++++|++.|+..+|++++.+|...|+++.|..+++++.++.|++...|..++.+|.+.|++++|.+++++|
T Consensus 475 ~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHHh
Q 009663 483 KDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527 (529)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
.++|+.+.|+++|+++.+..|.|+.+++.||+.++++..+++|..
T Consensus 555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 599 (697)
T PLN03081 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK 599 (697)
T ss_pred HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-65 Score=534.02 Aligned_cols=493 Identities=25% Similarity=0.415 Sum_probs=441.3
Q ss_pred cccHHHHHHHHHHc---cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHH
Q 009663 10 QTLNQQVLAILERC---NHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITA 86 (529)
Q Consensus 10 ~~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 86 (529)
++...++..+++.| +....+.++|..+.+.+..+++.++|.||..|++.| +++.|.++|++|++||..+||.+|.+
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g-~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC-ChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 34445555565555 445567788888888888888999999999999999 99999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH
Q 009663 87 YASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI 166 (529)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 166 (529)
|++. |++++|+++|++|...|+ .||..||+.++++|+..+++..+.+++..+.+.|+.|+..+++.|+.+|++.| ++
T Consensus 162 ~~~~-g~~~~A~~~f~~M~~~g~-~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~ 238 (857)
T PLN03077 162 YAKA-GYFDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DV 238 (857)
T ss_pred HHhC-CCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CH
Confidence 9999 999999999999999998 99999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHH------------------------------------------------------
Q 009663 167 GIARKLFDEMSDRNVVSWTAMISGYT------------------------------------------------------ 192 (529)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~ll~~~~------------------------------------------------------ 192 (529)
+.|.++|++|..+|..+||++|.+|+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 99999999887766666655555554
Q ss_pred ----------------hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 193 ----------------RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 193 ----------------~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
+.|++++|.++|++|..||..+|+.+|.+|++.|++++|+++|++|... ++.||..||+.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~Pd~~t~~~l 395 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD---NVSPDEITIASV 395 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCCCceeHHHH
Confidence 4566666666677777788889999999999999999999999999877 999999999999
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHH
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
+.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.+|++|. .++.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..+++.|+++|++.|++++|.++|+.+
T Consensus 476 ~lf~~m~----~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 476 IFFRQML----LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHH----hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 9999997 569999999999999999999999999999999876 99999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCccCCcc
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI--DPNNGGYGIMLANIYGELGKWDEVRKVRKMLK-DRNAYKTPGC 493 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~ 493 (529)
.||..+|++++.+|++.|+.++|.++|++|.+. .| |..+|..++.+|.+.|++++|.++|++|. +.|+.|+...
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 789999999999999999999999999999984 46 77888888899999999999999999998 6788776543
Q ss_pred cEEEECCeEEEEeeCCCCCCChHHHHHHHHHH
Q 009663 494 SWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525 (529)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (529)
.. ..+....+-++.+++++++++|
T Consensus 628 y~--------~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 628 YA--------CVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HH--------HHHHHHHhCCCHHHHHHHHHHC
Confidence 32 2334445567888888888887
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=513.03 Aligned_cols=501 Identities=17% Similarity=0.224 Sum_probs=445.7
Q ss_pred ccccccHHHHHHHHHHccCcchHHHHHHHHHHhCC-CCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHH
Q 009663 7 QLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQ-SQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMIT 85 (529)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 85 (529)
..+.+....+...+.++|++.++.++++.|.+.|+ +++..+++.++..|++.| .+++|..+|+.|..|+..+||.+|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455555555556567999999999999999996 567788889999999998 9999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC
Q 009663 86 AYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND 165 (529)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 165 (529)
+|++. |+++.|.++|++|.+.|+ .||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.| +
T Consensus 446 a~~k~-g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~ 522 (1060)
T PLN03218 446 VCASS-QDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-Q 522 (1060)
T ss_pred HHHhC-cCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-C
Confidence 99999 999999999999999998 99999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHHHHHHHHhCCChhHHHHHH
Q 009663 166 IGIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMP------DRDVPAWNSVIAGCTQNGLFSDAISFF 235 (529)
Q Consensus 166 ~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (529)
+++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 899999999999999999999999999984 478999999999999999999999999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--
Q 009663 236 RRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK-- 313 (529)
Q Consensus 236 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 313 (529)
+.|.+. ++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 603 ~~M~e~---gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 603 QMIHEY---NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999887 999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred --CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh
Q 009663 314 --KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE 391 (529)
Q Consensus 314 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 391 (529)
++..+|+++|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~---~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~ 755 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKS---IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTI 755 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 5778999999999999999999999999988 899999999999999999999999999999999866 9999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHH
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM---KIEPDEVVWGSLLNGCKI----Y-------------------GRTDFAEFAV 445 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 445 (529)
+|+.++.+|++.|++++|.+++++| ++.||..+|++++..|.+ . +..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999 889999999999876432 1 1246799999
Q ss_pred HHHHhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHH
Q 009663 446 KKLIEID--PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALE 523 (529)
Q Consensus 446 ~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (529)
++|.+.+ | +..+|..++.++.+.+..+.+..+++.|...+..++.......++ .+ .++ .+++..+++
T Consensus 836 ~eM~~~Gi~P-d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~----g~----~~~--~~~A~~l~~ 904 (1060)
T PLN03218 836 RETISAGTLP-TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD----GF----GEY--DPRAFSLLE 904 (1060)
T ss_pred HHHHHCCCCC-CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH----hh----ccC--hHHHHHHHH
Confidence 9999855 6 667778787888888888988888888877766554443333333 22 111 367999999
Q ss_pred HHHhcC
Q 009663 524 SMVALH 529 (529)
Q Consensus 524 ~~~~~~ 529 (529)
+|.++|
T Consensus 905 em~~~G 910 (1060)
T PLN03218 905 EAASLG 910 (1060)
T ss_pred HHHHcC
Confidence 998876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=497.91 Aligned_cols=462 Identities=16% Similarity=0.253 Sum_probs=425.6
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHHHhc
Q 009663 14 QQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITAYAS 89 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~ 89 (529)
..+...+...+...++..++..|.+ |+..+|+.+|.+|++.| +++.|.++|+.|. .||..+||.+|.+|++
T Consensus 410 ~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k 484 (1060)
T PLN03218 410 AKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 3445556666778888888887764 99999999999999999 9999999999996 5899999999999999
Q ss_pred CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHH
Q 009663 90 QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIA 169 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A 169 (529)
. |+.++|.++|++|.+.|+ .||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.| ++++|
T Consensus 485 ~-G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G-~~deA 561 (1060)
T PLN03218 485 S-GKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG-AVDRA 561 (1060)
T ss_pred C-cCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC-CHHHH
Confidence 9 999999999999999998 99999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhCC------CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 170 RKLFDEMS------DRNVVSWTAMISGYTRVGDIKNAASLFDSMPD----RDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 170 ~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
.++|++|. .||..+|+++|.+|++.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999995 38999999999999999999999999999975 567999999999999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC----CCC
Q 009663 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS----KKR 315 (529)
Q Consensus 240 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 315 (529)
.. |+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||
T Consensus 642 ~~---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 642 KK---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred Hc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 87 99999999999999999999999999999999999999999999999999999999999999999984 679
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
..+|+.||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|+++.|.++|++|.+. |+.||..+|+.
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~---~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tyns 794 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKR---LGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRC 794 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 99999999999999999999999999998 999999999999999999999999999999999877 99999999999
Q ss_pred HHHHHHh----c-------------------CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 396 LVDLLGR----A-------------------GRFEEALEVVKGM---KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 396 l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
++..|.+ + +..++|..+|++| |+.||..+|+.++.++...+....+..+++.+.
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 9876432 1 2246799999999 899999999999988888888999988888776
Q ss_pred hc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCc
Q 009663 450 EI-DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPG 492 (529)
Q Consensus 450 ~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 492 (529)
.. .+.+..+|..++.++.+. .++|..++++|...|+.|+..
T Consensus 875 ~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 875 ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 43 344788999999987432 368999999999999988765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=472.83 Aligned_cols=466 Identities=19% Similarity=0.270 Sum_probs=420.0
Q ss_pred ccHHHHHHHHHHc---cCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHH
Q 009663 11 TLNQQVLAILERC---NHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAY 87 (529)
Q Consensus 11 ~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 87 (529)
++..++..++..| ++.+.+.++|..|.+.|+.||+.+|+.|+..|++.| +++.|.++|++|+.||..+||.++.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 4555566666655 556667999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHH
Q 009663 88 ASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIG 167 (529)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 167 (529)
++. |++++|+++|++|.+.|. .||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+++.|+.+|++.| +++
T Consensus 200 ~~~-g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~ 276 (697)
T PLN03081 200 VDA-GNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIE 276 (697)
T ss_pred HHC-cCHHHHHHHHHHHHHhCC-CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHH
Confidence 999 999999999999999998 99999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 168 IARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMP----DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 168 ~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
+|.++|++|..+|..+||+++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-- 354 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-- 354 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999994 589999999999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHH
Q 009663 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS----KKRLTSW 319 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 319 (529)
|+.||..+++.++.+|++.|++++|.++|+.|. .||..+||.+|.+|++.|+.++|.++|++|. .||..||
T Consensus 355 -g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 355 -GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred -CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 999999999999999999999999999999985 3689999999999999999999999999986 4788899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL 399 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 399 (529)
+.++.+|++.|+.++|.++|+.|.+ ..|+.|+..+|+.++.++++.|++++|.++++++ ++.|+..+|+.|+.+
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~--~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSE--NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH--hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHH
Confidence 9999999999999999999999975 2699999999999999999999999999999876 678999999999999
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHH--------HH--H
Q 009663 400 LGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN--NGGYGIML--------AN--I 465 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l--------~~--~ 465 (529)
|...|+++.|..+++++ +..|+ ..+|..++..|++.|++++|.+++++|.+.+-. ....|..+ .. .
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 99999999999999988 66774 679999999999999999999999999986521 11111110 00 0
Q ss_pred H-HhcCCHHHHHHHHHHHhhCCCccCCcc
Q 009663 466 Y-GELGKWDEVRKVRKMLKDRNAYKTPGC 493 (529)
Q Consensus 466 ~-~~~g~~~~a~~~~~~~~~~~~~~~~~~ 493 (529)
+ ....-++...++..+|.+.|..|+...
T Consensus 584 h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 584 HPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 0 001124566778888999998877643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-30 Score=276.59 Aligned_cols=449 Identities=12% Similarity=0.066 Sum_probs=311.9
Q ss_pred HHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccC
Q 009663 51 LVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127 (529)
Q Consensus 51 ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 127 (529)
++..+.+.| ++++|..+++.+. +.+...|+.+...+... |++++|.+.|+++.+.. +.+...+..+...+...
T Consensus 437 l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 437 LILSYLRSG-QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHC
Confidence 334444444 4555555444443 23344555555666555 66666666666665543 34445555555556666
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 009663 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLF 204 (529)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~ 204 (529)
|++++|.+.++.+.+.+ +.+..++..+...+.+.| +.++|...++++.. .+...+..++..+.+.|++++|..++
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTG-NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666554 234556666666666666 66666666666543 23445666666677777777777777
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC
Q 009663 205 DSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL 281 (529)
Q Consensus 205 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 281 (529)
+.+.+ .+..+|..+..+|...|++++|...|+.+... .+.+...+..+..++...|++++|...++.+.+..+
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66543 34566777777777777777777777777632 123445566666777777777777777777776543
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFI 358 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~ 358 (529)
.+..++..++..+...|++++|..+++.+.+. +...+..+...+...|++++|...|+++.. ..|+..++.
T Consensus 667 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 740 (899)
T TIGR02917 667 -DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-----RAPSSQNAI 740 (899)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----hCCCchHHH
Confidence 24566777777777777777777777766542 344677777888888888888888888864 345556777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 436 (529)
.+..++...|++++|...++.+.+. .+.+...+..+...|...|++++|.++|+++ .. +++..+++.+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 7888888889999999888888754 2446778888889999999999999999988 33 346788888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChH
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTE 516 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (529)
+ ++|+..++++.+..|+++.++..++.++...|++++|..+++++.+.+.. ++.... .........++.+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~--------~l~~~~~~~g~~~ 888 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRY--------HLALALLATGRKA 888 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHH--------HHHHHHHHcCCHH
Confidence 9 88999999999999999999999999999999999999999999987764 333222 1233334568889
Q ss_pred HHHHHHHHHHh
Q 009663 517 EIYDALESMVA 527 (529)
Q Consensus 517 ~~~~~~~~~~~ 527 (529)
++...+++|++
T Consensus 889 ~A~~~~~~~~~ 899 (899)
T TIGR02917 889 EARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHhC
Confidence 99999998864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-29 Score=270.18 Aligned_cols=451 Identities=14% Similarity=0.066 Sum_probs=389.7
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCC
Q 009663 15 QVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQP 91 (529)
Q Consensus 15 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~ 91 (529)
.+...+...++.+.+..+++.+.+. .+.++.++..+...+...| ++++|.+.|+++. +.+...+..+...+...
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~- 512 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQE- 512 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-
Confidence 3444455567777777777777654 4567888999999999999 9999999999875 44566777888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARK 171 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~ 171 (529)
|++++|...|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.| ++++|.+
T Consensus 513 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~ 588 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG-QLKKALA 588 (899)
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC-CHHHHHH
Confidence 99999999999999876 6778899999999999999999999999998876 446778888999999999 9999999
Q ss_pred HHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCC
Q 009663 172 LFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDN 245 (529)
Q Consensus 172 ~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 245 (529)
+++.+.. .+...|..+..++.+.|++++|...|+++.+ .+...+..+...+.+.|++++|...|+++...
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 664 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL---- 664 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 9999875 4677899999999999999999999998753 36678889999999999999999999998743
Q ss_pred CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHH
Q 009663 246 IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMI 323 (529)
Q Consensus 246 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 323 (529)
.+.+..++..+...+...|++++|..+++.+.+.++ .+...+..+...+...|++++|...|+++.. ++..++..++
T Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 234577888999999999999999999999998864 4677888899999999999999999998754 4446778889
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA 403 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (529)
.++.+.|++++|.+.++++.+ ..+.+...+..+...|...|++++|..+|+++.+. .++++..+..+...+...
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLK----THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 999999999999999999975 34456778888999999999999999999999864 244688899999999999
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
|+ ++|+.+++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 8899999988 4445 5677888889999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 009663 482 LKD 484 (529)
Q Consensus 482 ~~~ 484 (529)
|.+
T Consensus 897 ~~~ 899 (899)
T TIGR02917 897 LLN 899 (899)
T ss_pred HhC
Confidence 863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=193.35 Aligned_cols=430 Identities=13% Similarity=0.146 Sum_probs=226.7
Q ss_pred HHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC-------------------
Q 009663 14 QQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT------------------- 74 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~------------------- 74 (529)
..+...+...-+......+.++..+.....+ ....|....-+.| ++++|++.-.-+-.
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~--~~l~lah~~yq~g-d~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~ 95 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD--DRLELAHRLYQGG-DYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG 95 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccch--hHHHHHHHHHhcc-CHHHHHHHHhHhhccCCCcccceeeehhhhhcc
Confidence 4444444444444444455555544422211 2334555555566 88888875433211
Q ss_pred ------------------CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHH
Q 009663 75 ------------------PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136 (529)
Q Consensus 75 ------------------~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (529)
....+|..+...+-.. |+++.|+.+|+.+++.. +.....|..+..++...|+.+.|.+.
T Consensus 96 ~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker-g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER-GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh-chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHH
Confidence 1123444455555444 56666666666665553 34455555555555566666666665
Q ss_pred HHHHHHhCCCCchhH-HHHHHHHHHhcCCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-
Q 009663 137 HTQIVKSGFEQYPVV-ETALVNSYSRSGNDIGIARKLFDEMSD--RN-VVSWTAMISGYTRVGDIKNAASLFDSMPDRD- 211 (529)
Q Consensus 137 ~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~- 211 (529)
|.+.++.+ |+... .+.+...+-..| ++.+|...|.+..+ |. ...|..|...+..+|++..|+..|++...-|
T Consensus 173 ~~~alqln--P~l~ca~s~lgnLlka~G-rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP 249 (966)
T KOG4626|consen 173 FFEALQLN--PDLYCARSDLGNLLKAEG-RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP 249 (966)
T ss_pred HHHHHhcC--cchhhhhcchhHHHHhhc-ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC
Confidence 55555532 33222 222333333445 55555555555443 22 2345555555555666666666665554322
Q ss_pred --hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHH
Q 009663 212 --VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFIS 288 (529)
Q Consensus 212 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 288 (529)
...|-.|...|...+.+++|+..|.+.. ...|+. ..+..+...|...|.++.|+..|++.++..+. -...|
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl-----~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay 323 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRAL-----NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAY 323 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHH-----hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHH
Confidence 2355555556666666666666555554 334432 34444545555556666666666655554332 23455
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNAC 364 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~ 364 (529)
+.|..++-..|++.+|.+.|++... ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-----v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE-----VFPEFAAAHNNLASIY 398 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-----hChhhhhhhhhHHHHH
Confidence 5566666666666666666655432 1233555556666666666666666655532 3332 23455555555
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFA 441 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 441 (529)
-++|++++|+..|++.. .+.|+ ...|+.+...|...|+.+.|.+.+.+. .++|. ....+.|...|...|+..+|
T Consensus 399 kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence 56666666666666555 44554 445555666666666666666665554 44553 34555555556666666666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 442 EFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 442 ~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
++.|+.++++.|+-+.++..++.++
T Consensus 476 I~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHccCCCCchhhhHHHHHH
Confidence 6666666666666566655555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-21 Score=211.07 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=101.9
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHH----
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCL---- 396 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l---- 396 (529)
...+...|++++|++.|++..+ ..| +...+..+...+...|++++|...++++.+. .| ++..+..+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~-----~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l 539 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLA-----LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 3445566777777777777754 234 3345556666777777777777777776642 23 22222222
Q ss_pred ----------------------------------------HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009663 397 ----------------------------------------VDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 397 ----------------------------------------~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 436 (529)
...+...|+.++|.++++.- +++...+..+...+.+.|
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcC
Confidence 23344455555555555522 234455666777788888
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++++|+..|+++++..|+++..+..++.+|...|++++|+..++++.+.
T Consensus 618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888888888888888888877654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-21 Score=209.35 Aligned_cols=451 Identities=13% Similarity=0.073 Sum_probs=289.3
Q ss_pred HHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHh-hcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCC
Q 009663 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCT-LKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPA 92 (529)
Q Consensus 17 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 92 (529)
..++...++.++|.+.++.+.+.. +|+............ ..| +.++|.+.++.+. +.+...+..+...+... |
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~-g 195 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPGNTGLRNTLALLLFSS-G 195 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc-C
Confidence 345667788899998888887553 334332222333333 345 8999999998886 33455677777777777 9
Q ss_pred ChHHHHHHHHHHHHCCCC---------------C----------------CCcchH---------------------HHH
Q 009663 93 HASSAFSLYRDMVRRGQP---------------Q----------------PNQFIY---------------------PHV 120 (529)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~---------------~----------------~~~~~~---------------------~~l 120 (529)
++++|+..|+++...... . |+...+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999999887653200 0 110000 011
Q ss_pred HHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCh---hhHH----------
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RNV---VSWT---------- 185 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~~---~~~~---------- 185 (529)
...+...|++++|...+++.++.. +.+...+..+..++.+.| ++++|...|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 233556789999999999998875 336788888899999999 99999999988875 322 1121
Q ss_pred --HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-HHHHHHHH--
Q 009663 186 --AMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-QVTLVCAL-- 257 (529)
Q Consensus 186 --~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll-- 257 (529)
.....+.+.|++++|+..|++... .+...+..+...+...|++++|++.|++..+. .|+ ...+..+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l 428 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 123456788999999999988754 35567778888999999999999999988743 343 22222222
Q ss_pred ----------------------------------------HHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh
Q 009663 258 ----------------------------------------SAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK 297 (529)
Q Consensus 258 ----------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (529)
..+...|++++|...++++++..+. +..++..+...|.+
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 2233456666777777666665432 34455566666777
Q ss_pred CCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH---------HHHHHHHHHh
Q 009663 298 CGSLKEARRAFDRNSK--K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV---------TFISLLNACT 365 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~---------~~~~l~~~~~ 365 (529)
.|++++|...|+++.+ | +...+..+...+...++.++|+..++.+.. ....++.. .+..+...+.
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~---~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR---AQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc---hhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 7777777777666532 2 333444444445556666666666665432 11111111 1112334455
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
..|+.++|..+++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56666666665551 1234555666777777777777777777776 4444 46667777777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.++++.+..|+++.....++.++...|++++|.++++++.....
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 77777777777777777777777777777777777777766543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=182.80 Aligned_cols=428 Identities=13% Similarity=0.133 Sum_probs=323.8
Q ss_pred CCchhHHHHHHHHHhhcC----CChhHHHHHhhcCC---------CCChhHHH-----HHHH-HHhcCCCChHHHHHHHH
Q 009663 42 SQTNFYAFKLVRFCTLKL----SNLTYARFIFDHLT---------TPNTYLYT-----AMIT-AYASQPAHASSAFSLYR 102 (529)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~----~~~~~A~~~~~~~~---------~~~~~~~~-----~ll~-~~~~~~~~~~~a~~~~~ 102 (529)
.++....+.+++-+.+.. +.++.|-++|+... ---..-=+ .+++ .+.+. .+.+....--.
T Consensus 28 ~~~s~~s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~-~r~d~s~a~~~ 106 (966)
T KOG4626|consen 28 SVSSSGSSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG-SRLDKSSAGSL 106 (966)
T ss_pred CcccccchHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc-cchhhhhhhhh
Confidence 455555666776665544 24566666665543 24696321 2333 33333 56666555554
Q ss_pred HHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CC
Q 009663 103 DMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RN 180 (529)
Q Consensus 103 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~ 180 (529)
...+.. +--.++|..+.+.+...|+++.|+.++..+++.. +..+..|..+..++...| +.+.|...|.+..+ |+
T Consensus 107 ~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 107 LAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPD 182 (966)
T ss_pred hhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcc
Confidence 444443 5567888889999999999999999999888865 236678888888999988 89999998888877 43
Q ss_pred hhhHH-HHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHH
Q 009663 181 VVSWT-AMISGYTRVGDIKNAASLFDSMPD--RD-VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVC 255 (529)
Q Consensus 181 ~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ 255 (529)
..... .+...+-..|++++|...+.+..+ |. .+.|..|...+-.+|+...|+..|++.. .++|+. ..|..
T Consensus 183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-----kldP~f~dAYiN 257 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-----KLDPNFLDAYIN 257 (966)
T ss_pred hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh-----cCCCcchHHHhh
Confidence 33322 233444557888888888877554 32 3578888888888999999999998887 567763 46888
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCCh
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK--R-LTSWNSMINSFALHGQS 332 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~ 332 (529)
|-..|...+.++.|...|.++....+ -...++..+...|...|.++.|+..|++..+. + ...|+.|..++-..|++
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch
Confidence 88888888999999998888877653 24567777888888899999999999886543 3 34899999999999999
Q ss_pred hHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 410 (529)
.+|.+.|.+... +.|+ ....+.|...+...|.++.|..+|.... .+.|. ...++.|...|-+.|++++|+
T Consensus 337 ~ea~~cYnkaL~-----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 337 TEAVDCYNKALR-----LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHHHHHHHHHH-----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 999999988864 3343 4567788888888999999999998887 45665 667888888999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 411 EVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 411 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
.-+++. .+.|+ ...++.+...|...|+.+.|++.+.+++.++|.-..++..|+.+|..+|+..+|+.-++...+....
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999887 77886 5678888888999999999999999999999988888899999999999999999998888766554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-19 Score=183.43 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=168.7
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHH
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQSENSICVFEE 341 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (529)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|..++++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666777666666554 3433333345555688999999999987653 3344566777888899999999999999
Q ss_pred HhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 009663 342 MMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE 419 (529)
Q Consensus 342 m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 419 (529)
..+ .. |+. ..+..+.......|++++|...+++..+ +.|+...+..+..++.+.|++++|...+++. ...
T Consensus 568 AL~---l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 568 AEQ---RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHh---cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 875 32 433 3333444455567999999999999984 4678889999999999999999999999988 556
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 420 P-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 420 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6 5677888888999999999999999999999999999999999999999999999999999986653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-19 Score=183.92 Aligned_cols=251 Identities=16% Similarity=0.087 Sum_probs=202.7
Q ss_pred CCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
.+++++|++.|+..... ....| ....+..+...+...|++++|+..+++.++..+. ....|..+..++...|++++
T Consensus 307 ~~~y~~A~~~~~~al~~--~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 307 DESYEEAARAFEKALDL--GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHH
Confidence 47899999999998743 11234 3456777777888999999999999999887542 45577888899999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 304 ARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 304 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
|...|++..+ .+...|..+...+...|++++|+..|++..+ ..| +...+..+...+.+.|++++|...|++
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-----l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID-----LDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999987643 3566899999999999999999999999965 344 456677788889999999999999999
Q ss_pred hHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 380 MTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE-V-------VWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 380 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
..+. .| +...+..+...+...|++++|.+.|++. .+.|+. . .++..+..+...|++++|.+++++++
T Consensus 459 al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 459 CKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9853 45 5788999999999999999999999986 444431 1 11222223344699999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 450 EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 450 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+++|++...+..++.++.+.|++++|+..+++..+..
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=182.31 Aligned_cols=290 Identities=13% Similarity=0.079 Sum_probs=191.0
Q ss_pred HhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC---HHHHHHHHHHhhccCC
Q 009663 192 TRVGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN---QVTLVCALSAIGHTGM 265 (529)
Q Consensus 192 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 265 (529)
...|++++|...|+++.+. +..++..+...+...|++++|..+++.+... ...++ ...+..+...+...|+
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR---PDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3444445555555444321 2234455555555555555555555555422 11111 1234444555555555
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC--------hhHHHHHHHHHHHcCChhHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR--------LTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~ 337 (529)
++.|..+|+.+.+... .+..++..++.++.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5555555555554322 234455555666666666666666665543221 1134556677788889999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 338 VFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.|+++.+ .. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|...|++++|.+.+++
T Consensus 202 ~~~~al~---~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 202 LLKKALA---AD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHh---HC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988864 22 223556777888888999999999999998854 343 45678889999999999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCccCC
Q 009663 416 M-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE---LGKWDEVRKVRKMLKDRNAYKTP 491 (529)
Q Consensus 416 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 491 (529)
+ ...|+...+..++..+.+.|++++|..+++++.+..|++.... .+...+.. .|+.++++.+++++.++++.++|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 8 5577777778888899999999999999999999999665444 34444432 56899999999999999998888
Q ss_pred cc
Q 009663 492 GC 493 (529)
Q Consensus 492 ~~ 493 (529)
.+
T Consensus 354 ~~ 355 (389)
T PRK11788 354 RY 355 (389)
T ss_pred CE
Confidence 73
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-18 Score=176.60 Aligned_cols=399 Identities=11% Similarity=0.029 Sum_probs=212.0
Q ss_pred chhHHHHHHHHHhhcCCChhHHHHHhhcCCC---CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHH
Q 009663 44 TNFYAFKLVRFCTLKLSNLTYARFIFDHLTT---PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHV 120 (529)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 120 (529)
++....-.+......| +.++|.+++....+ .+...+..+...+... |++++|..+|++..+.. +.+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~g-~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~--P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAG-QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLE--PQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3444444555555555 66666666655442 2223355555555555 66666666666655543 3344445555
Q ss_pred HHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCH
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~ 197 (529)
...+...|++++|...++++.+.. +.+.. +..+..++...| +.++|...++++.. | +...+..+...+...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 555556666666666666665543 22333 555555555666 56666666655554 2 223334444455555555
Q ss_pred HHHHHHHhhCCCCChh--------hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCc---
Q 009663 198 KNAASLFDSMPDRDVP--------AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGML--- 266 (529)
Q Consensus 198 ~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~--- 266 (529)
+.|++.++.... ++. ....++......+ ....+++
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~---------------------------------~~~~~r~~~a 212 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT---------------------------------RSEKERYAIA 212 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc---------------------------------cChhHHHHHH
Confidence 555555554443 111 0011111111000 0111122
Q ss_pred hHHHHHHHHHHHh-CCCCCcc-HHH----HHHHHHHhCCCHHHHHHHHhhcCCCC--hh--HHHHHHHHHHHcCChhHHH
Q 009663 267 QLGKVIHGYVYRN-GLDLDSF-ISN----ALIDMYGKCGSLKEARRAFDRNSKKR--LT--SWNSMINSFALHGQSENSI 336 (529)
Q Consensus 267 ~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~ 336 (529)
+.|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+++.+.+ .. ....+...|...|++++|+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4455555555543 1112211 110 00223345566667776666665432 11 1122355666677777777
Q ss_pred HHHHHHhhcccCCC-C--CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHH
Q 009663 337 CVFEEMMRCQDHNI-R--PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR----------IEPQ---IEHYGCLVDLL 400 (529)
Q Consensus 337 ~~~~~m~~~~~~~~-~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~ 400 (529)
..|+++.. ... . +.......+..++...|++++|..+++.+..... -.|+ ...+..+...+
T Consensus 293 ~~l~~~l~---~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 293 SILTELFY---HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHhh---cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 77776643 211 0 0123344455556667777777777776664210 0112 12345566667
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 009663 401 GRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
...|++++|+++++++ ...| +...+..+...+...|++++|++.++++++..|++..++...+..+...|++++|..+
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 7777777777777776 3334 4566667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhCC
Q 009663 479 RKMLKDRN 486 (529)
Q Consensus 479 ~~~~~~~~ 486 (529)
++++.+..
T Consensus 450 ~~~ll~~~ 457 (765)
T PRK10049 450 TDDVVARE 457 (765)
T ss_pred HHHHHHhC
Confidence 77776553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-18 Score=174.25 Aligned_cols=257 Identities=11% Similarity=0.021 Sum_probs=204.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 216 NSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 216 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
..+..++.. ++.++|+..+.+... ..|+......+..++...|++++|...++++... +|+...+..+..++
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~-----~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQ-----RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHH-----hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 334444443 566667776666653 3466554444455567899999999999987655 33445566778889
Q ss_pred HhCCCHHHHHHHHhhcCCCChhH---HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHH
Q 009663 296 GKCGSLKEARRAFDRNSKKRLTS---WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 372 (529)
.+.|+.++|...|++..+.++.. +..+.......|++++|...+++..+ ..|+...+..+..++.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-----l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-----IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999998876554332 22333344456999999999999965 55778889999999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 373 GRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
|...+++... ..| +...+..+..++...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.
T Consensus 628 A~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999984 366 5778888999999999999999999988 5566 67889999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 450 EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 450 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+..|++..+....++...+..+++.|.+-+++....++.
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999888766664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-19 Score=179.11 Aligned_cols=341 Identities=11% Similarity=-0.015 Sum_probs=195.9
Q ss_pred HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhc
Q 009663 118 PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRV 194 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~ 194 (529)
..++..+.+.|+++.|..+++......+. +...+..++.+....| +++.|.+.|+++.. | +...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g-~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASS-QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 33444444445555555555444444322 2223333333444444 45555555555443 2 233444444455555
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHH
Q 009663 195 GDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKV 271 (529)
Q Consensus 195 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 271 (529)
|++++|...+++... .+...+..+...+...|++++|...++.+... .|+.......+..+...|++++|..
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----VPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555432 23445555566666666666666666655422 2222211111223555666666666
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhH----HHHHHHHHhh
Q 009663 272 IHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSEN----SICVFEEMMR 344 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~ 344 (529)
.++.+.+....++......+..++...|++++|+..|++... .+...+..+...+...|++++ |+..|+++.+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 666665554333333444445566667777777777665443 234466667777777777764 6778887754
Q ss_pred cccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 345 CQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 345 ~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
..| +...+..+...+...|++++|...++++.+. .| +...+..+..+|.+.|++++|...++++ ...|+
T Consensus 279 -----l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 279 -----FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred -----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 334 4456777777888888888888888887743 45 4566677778888888888888888877 44565
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 422 EVV-WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 422 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
... +..+..++...|++++|+..|+++.+..|++. ...+++|...+.+..+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 433 33345667788888888888888888887653 23344555555555444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=175.54 Aligned_cols=285 Identities=12% Similarity=0.095 Sum_probs=148.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCCHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQY---PVVETALVNSYSRSGNDIGI 168 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~~ 168 (529)
|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.| +++.
T Consensus 49 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g-~~~~ 125 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG-LLDR 125 (389)
T ss_pred CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-CHHH
Confidence 66677777777776654 44555666666666666777777766666665432111 134555666666666 6666
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------hhhHHHHHHHHHhCCChhHHHHHHHH
Q 009663 169 ARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRD--------VPAWNSVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 169 A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (529)
|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|...|++
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6666666654 234455555555555555555555555543211 11233444555555666666666665
Q ss_pred hhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C
Q 009663 238 MGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--K 314 (529)
Q Consensus 238 m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 314 (529)
+... .| +...+..+...+.+.|++++|..+++++.+.++.....+++.++.+|...|++++|...++++.+ |
T Consensus 206 al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 206 ALAA-----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHhH-----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5422 22 23344444455555555555555555555443322233444555555555555555555554332 2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC---CCcHHHHHHHHHHhHHhcCCCCCh
Q 009663 315 RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH---GGLVEQGRAYFKLMTKTYRIEPQI 390 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~ 390 (529)
+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++.++ ++.|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR-----RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 333334455555555555555555555532 23555555544444332 23455555555555543 444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-17 Score=173.65 Aligned_cols=422 Identities=9% Similarity=-0.025 Sum_probs=289.7
Q ss_pred cccccccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHH
Q 009663 6 NQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTA 82 (529)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 82 (529)
.+.++.-....+.+....++...+.+++....... +.+...+..+...+...| ++++|..+|+... +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45566667777888888899999999988887632 344556888888898998 9999999999953 455667778
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRS 162 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (529)
+...+... |++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...
T Consensus 89 la~~l~~~-g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 89 LILTLADA-GQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 88888888 99999999999999885 55666 888888899999999999999999997643 566667788888888
Q ss_pred CCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHHhh
Q 009663 163 GNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF---SDAISFFRRMG 239 (529)
Q Consensus 163 g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~ 239 (529)
| ..+.|.+.++.... ++.....+ ....+...++.. +.......+++ ++|++.++.+.
T Consensus 164 ~-~~e~Al~~l~~~~~-~p~~~~~l--------~~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 164 R-LSAPALGAIDDANL-TPAEKRDL--------EADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred C-ChHHHHHHHHhCCC-CHHHHHHH--------HHHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHH
Confidence 8 99999999998876 22210000 000111111100 00111122222 55566665554
Q ss_pred hcccCCCCCCH-HHH----HHHHHHhhccCCchHHHHHHHHHHHhCCC-CCccHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 009663 240 MEVSDNIRPNQ-VTL----VCALSAIGHTGMLQLGKVIHGYVYRNGLD-LDSFISNALIDMYGKCGSLKEARRAFDRNSK 313 (529)
Q Consensus 240 ~~~~~~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 313 (529)
... ...|+. ..+ ...+.++...|+.++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+
T Consensus 224 ~~~--~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 224 ALW--HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred hhc--ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 210 111211 111 11133444556777777777777666532 221 222245667777777777777776543
Q ss_pred CC-------hhHHHHHHHHHHHcCChhHHHHHHHHHhhccc--------CCCCCCH---HHHHHHHHHHhCCCcHHHHHH
Q 009663 314 KR-------LTSWNSMINSFALHGQSENSICVFEEMMRCQD--------HNIRPDG---VTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 314 ~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------~~~~p~~---~~~~~l~~~~~~~~~~~~a~~ 375 (529)
.+ ...+..+..++...|++++|..+++.+....+ ....|+. ..+..+...+...|+.++|+.
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 12344555567777888888888887764100 0112342 234566677888999999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 376 YFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 376 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
.++++... .| +...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|++++|+.+++++++..
T Consensus 381 ~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999854 45 6788899999999999999999999998 66775 6667777778899999999999999999999
Q ss_pred CCCchhHH
Q 009663 453 PNNGGYGI 460 (529)
Q Consensus 453 p~~~~~~~ 460 (529)
|+++.+..
T Consensus 458 Pd~~~~~~ 465 (765)
T PRK10049 458 PQDPGVQR 465 (765)
T ss_pred CCCHHHHH
Confidence 98875543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-18 Score=173.54 Aligned_cols=321 Identities=10% Similarity=-0.009 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 009663 153 TALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNG 226 (529)
Q Consensus 153 ~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 226 (529)
..++..+.+.| +++.|..+++.... | +...+..++.+....|++++|...|+++.. .+...+..+...+.+.|
T Consensus 46 ~~~~~~~~~~g-~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKD-ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 34566788889 99999999998875 3 455677777888889999999999999864 35667888899999999
Q ss_pred ChhHHHHHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHH
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
++++|+..+++.. ...|+ ...+..+..++...|++++|...++.+....+.+.. .+..+ ..+...|++++|.
T Consensus 125 ~~~~Ai~~l~~Al-----~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 125 QYATVADLAEQAW-----LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred CHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 9999999999998 44554 556778888999999999999999988877654333 33333 3478899999999
Q ss_pred HHHhhcCCCC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHH----HHHHH
Q 009663 306 RAFDRNSKKR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ----GRAYF 377 (529)
Q Consensus 306 ~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~ 377 (529)
..++.+.+.+ ...+..+..++...|++++|+..++++.. .. +.+...+..+...+...|++++ |...|
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA---RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 9999865532 23455567788999999999999999975 32 3355677788889999999985 89999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 378 KLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 378 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
+++.+ +.| +...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++.+.+|+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99884 356 5778999999999999999999999988 5556 4667778888999999999999999999999998
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+...+..++.++...|++++|+..+++..+....
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 8777777788999999999999999999877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-17 Score=163.71 Aligned_cols=427 Identities=9% Similarity=-0.005 Sum_probs=248.0
Q ss_pred HHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHH---HHHhcCCCChHHH
Q 009663 21 ERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMI---TAYASQPAHASSA 97 (529)
Q Consensus 21 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~~a 97 (529)
.+.|+...|...+++..+......+.++ .++..+...| +.++|...+++...|+...+..++ ..+... |++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHH
Confidence 3456666666666666555322223344 6667777776 777777777777655443333333 344445 777777
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~ 177 (529)
+++|+++.+.. +.+...+..++..+...++.++|++.++.+... .|+...+..++..+...+ +..+|++.++++.
T Consensus 122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~-~~~~AL~~~ekll 196 (822)
T PRK14574 122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD-RNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc-hHHHHHHHHHHHH
Confidence 77777777765 445566666666677777777777777777664 334444444444444445 5555777777776
Q ss_pred C--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-Chhh--------HHHHHHHH-----HhCCC---hhHHHHHHHH
Q 009663 178 D--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPDR-DVPA--------WNSVIAGC-----TQNGL---FSDAISFFRR 237 (529)
Q Consensus 178 ~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~li~~~-----~~~g~---~~~A~~~~~~ 237 (529)
+ | +...+..+..++.+.|-...|.++..+-++- +... ...+++.- ....+ .+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 5 3 4556666777777777777777777665421 0000 00111000 01112 2334444444
Q ss_pred hhhcccCCCCCCHHH----HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 009663 238 MGMEVSDNIRPNQVT----LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK 313 (529)
Q Consensus 238 m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 313 (529)
+.... +..++.... ..-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++++|+.+|..+..
T Consensus 277 l~~~~-~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 277 LLTRW-GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHhhc-cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 44210 011222111 1123445667777777777777777776655555666777777777777777777776533
Q ss_pred CC---------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC----------CCCCCHHH-HHHHHHHHhCCCcHHHH
Q 009663 314 KR---------LTSWNSMINSFALHGQSENSICVFEEMMRCQDH----------NIRPDGVT-FISLLNACTHGGLVEQG 373 (529)
Q Consensus 314 ~~---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------~~~p~~~~-~~~l~~~~~~~~~~~~a 373 (529)
.+ ......|.-+|...+++++|..+++++.+..+. ...||-.. +..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 21 122455666777777777777777777641110 01122222 23344556667777777
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 374 RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
++.++++... .| |......+...+...|.+.+|+++++.. .+.|+ ..+....+.++...+++.+|..+.+.+.+
T Consensus 436 e~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 7777777633 44 6667777777777777777777777665 44553 44555566666667777777777777777
Q ss_pred cCCCCchhH
Q 009663 451 IDPNNGGYG 459 (529)
Q Consensus 451 ~~p~~~~~~ 459 (529)
..|+++.+-
T Consensus 513 ~~Pe~~~~~ 521 (822)
T PRK14574 513 RSPEDIPSQ 521 (822)
T ss_pred hCCCchhHH
Confidence 777666443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-17 Score=164.56 Aligned_cols=390 Identities=10% Similarity=0.008 Sum_probs=278.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCc
Q 009663 48 AFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCP 125 (529)
Q Consensus 48 ~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 125 (529)
+...-..+.+.| +++.|...|+... .|+...|..+..++... |++++|++.++..++.+ +.+...|..+..++.
T Consensus 130 ~k~~G~~~~~~~-~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNK-DFNKAIKLYSKAIECKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD--PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 334455667777 8888888888765 46667777777788877 88888888888888775 556677888888888
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---------------------------
Q 009663 126 DVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--------------------------- 178 (529)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--------------------------- 178 (529)
..|++++|...+..+...+...+.. ...++..+.... ....+...++.-..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKF-AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 8888888887776655443211111 111111111111 11222222211111
Q ss_pred --CCh---hhHHHHHHH---HHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccC
Q 009663 179 --RNV---VSWTAMISG---YTRVGDIKNAASLFDSMPDR------DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD 244 (529)
Q Consensus 179 --~~~---~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 244 (529)
.+. ..+..+... ....+++++|.+.|++..+. ....|+.+...+...|++++|+..|++..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal----- 358 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI----- 358 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence 000 011111111 12346889999999887532 34578888899999999999999999987
Q ss_pred CCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHH
Q 009663 245 NIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWN 320 (529)
Q Consensus 245 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 320 (529)
...|+ ...|..+..++...|++++|...++.+++..+ .+..++..+..++...|++++|...|++..+ .+...+.
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 34565 55778888889999999999999999988754 3567888899999999999999999998754 3455788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh-h-------H
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-E-------H 392 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~-------~ 392 (529)
.+...+.+.|++++|+..|++..+ ..+.+...+..+...+...|++++|...|++.... .|+. . .
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l 510 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK----NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHH
Confidence 889999999999999999999864 22334677888889999999999999999998743 3421 1 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
++.....+...|++++|.+++++. .+.|+ ...+..+...+...|++++|+..|+++.++.+...
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 222223344579999999999986 55664 55788899999999999999999999999877533
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-15 Score=145.65 Aligned_cols=185 Identities=17% Similarity=0.166 Sum_probs=124.6
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC---------
Q 009663 299 GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH--------- 366 (529)
Q Consensus 299 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~--------- 366 (529)
+...+|...++.... .++..++.+...+.....+..|..-|..... .....+|..+...|...|..
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~--~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILK--KTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHh--hhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 344444444444332 2344555555566666666666665554443 01122455555555554432
Q ss_pred ---CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHH
Q 009663 367 ---GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 367 ---~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.+..++|+++|.++.+. .| |...-+.+.-.++..|++.+|..+|... ...-...+|-.+..+|...|++..
T Consensus 622 ek~kk~~~KAlq~y~kvL~~---dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRN---DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHH
Confidence 23467788888877743 44 6677777888888999999999999887 223355678888999999999999
Q ss_pred HHHHHHHHHhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 441 AEFAVKKLIEID--PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 441 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
|++.|+...+.. .+++.+...|++++.+.|++.+|.+.+.......+.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999888733 346778888999999999999999998888776553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-14 Score=145.78 Aligned_cols=426 Identities=8% Similarity=0.016 Sum_probs=314.0
Q ss_pred HHHHHHhhcCCChhHHHHHhhcCCC--CCh-hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc
Q 009663 50 KLVRFCTLKLSNLTYARFIFDHLTT--PNT-YLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD 126 (529)
Q Consensus 50 ~ll~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 126 (529)
.-+-..++.| +++.|+..|++... |+. .....++..+... |+.++|+..+++..... +........+...+..
T Consensus 39 ~~aii~~r~G-d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAG-DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSM--NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHH
Confidence 3344456777 99999999999873 443 1233788888888 99999999999998321 2233333333567889
Q ss_pred CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHH
Q 009663 127 VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RNVVSWTAMISGYTRVGDIKNAASLF 204 (529)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~ 204 (529)
.|++++|.++++.+.+..+. +...+..++..+...+ +.++|++.++++.. |+...+..++..+...++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999998644 5677778889999999 99999999999987 44444433434444456665699999
Q ss_pred hhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHH------HHHHHHh-hcc----CC---ch
Q 009663 205 DSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTL------VCALSAI-GHT----GM---LQ 267 (529)
Q Consensus 205 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~------~~ll~~~-~~~----~~---~~ 267 (529)
+++.+ | +...+..+..+..+.|-...|+++..+-... +.+..... ..+++-- ... .+ .+
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 99865 3 5667888889999999999999888765422 33332221 1111111 111 12 23
Q ss_pred HHHHHHHHHHHh-CCCCCc-cHH-H---HHHHHHHhCCCHHHHHHHHhhcCCCC--hh--HHHHHHHHHHHcCChhHHHH
Q 009663 268 LGKVIHGYVYRN-GLDLDS-FIS-N---ALIDMYGKCGSLKEARRAFDRNSKKR--LT--SWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 268 ~a~~~~~~~~~~-~~~~~~-~~~-~---~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~~ 337 (529)
.|+.-++.+... +..|.. ..| . -.+-++...|++.++++.|+.+...+ +. +-..+..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 455555555542 222322 222 2 23456778999999999999998654 23 55678899999999999999
Q ss_pred HHHHHhhcccCC-----CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHH
Q 009663 338 VFEEMMRCQDHN-----IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR----------IEPQ---IEHYGCLVDL 399 (529)
Q Consensus 338 ~~~~m~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~ 399 (529)
+|+.+.. .. ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..
T Consensus 349 l~~~~~~---~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 349 ILSSLYY---SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHhh---ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999865 22 123444457889999999999999999999986311 0122 2345567888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
+...|++.+|++.++++ ...| |......+...+...|.+.+|.+.++.+..+.|++..+....+.++...|+|++|..
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999 4455 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 009663 478 VRKMLKDRNAY 488 (529)
Q Consensus 478 ~~~~~~~~~~~ 488 (529)
+.+.+.+....
T Consensus 506 ~~~~l~~~~Pe 516 (822)
T PRK14574 506 LTDDVISRSPE 516 (822)
T ss_pred HHHHHHhhCCC
Confidence 99999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-14 Score=142.05 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
.++|+++|.+.. ..-+.|...-+.+.-.++..|++..|..+|..+.+.. .-...+|-.+..+|..+|++-.|.+
T Consensus 628 ~~KAlq~y~kvL----~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 628 QEKALQLYGKVL----RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHH----hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHH
Confidence 345555555552 2222344555555555556666666666666665431 2234455556666666666666666
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 412 VVKGM----KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 412 ~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
.|+.. ....+..+.+.|..++.+.|.+.+|.+.+..+....|.++.+...++...
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 66554 12235555666666666666666666666666666666666555554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-13 Score=122.60 Aligned_cols=412 Identities=14% Similarity=0.124 Sum_probs=257.9
Q ss_pred cHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-CCh-------------------------hHH
Q 009663 12 LNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKL-SNL-------------------------TYA 65 (529)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~-------------------------~~A 65 (529)
+.+.++.++ ..+...++--+++.|.+.|.+.++.+-..|++..+-.+ .++ +-|
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 344455544 45677778889999999999888877766665544322 011 112
Q ss_pred HHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCC
Q 009663 66 RFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGF 145 (529)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 145 (529)
. ++-+..+.+..+|..||.++|+- ...+.|.++|++.....+ +.+..+||.+|.+-.-. ...+++.+|....+
T Consensus 197 d-L~~E~~PKT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 197 D-LLFETLPKTDETVSIMIAGLCKF-SSLERARELYKEHRAAKG-KVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred H-HHHhhcCCCchhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 2 22222345566788888888888 888888888888887776 88888888888874322 22778888888888
Q ss_pred CCchhHHHHHHHHHHhcCCCHHHHHHH----HhhCCC----CChhhHHHHHHHHHhcCCHHH-HHHHHhhCCC-------
Q 009663 146 EQYPVVETALVNSYSRSGNDIGIARKL----FDEMSD----RNVVSWTAMISGYTRVGDIKN-AASLFDSMPD------- 209 (529)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~~A~~~----~~~~~~----~~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~~------- 209 (529)
.||..|+|+++.+..+.| +++.|.+. +.+|++ |...+|..+|..+++.++..+ +..++.++..
T Consensus 270 ~Pnl~TfNalL~c~akfg-~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFG-KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 889999999998888888 77766544 344432 777788888887777776543 3333333321
Q ss_pred -----CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCC-CCCC---HHHHHHHHHHhhccCCchHHHHHHHHHHHhC
Q 009663 210 -----RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDN-IRPN---QVTLVCALSAIGHTGMLQLGKVIHGYVYRNG 280 (529)
Q Consensus 210 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 280 (529)
.|...|..-+..|....+.+-|.++-.-........ +.|+ ..-|..+....+.....+.-...|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 133445666666667777776766655443211111 2222 1234455666667777777777777777666
Q ss_pred CCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH---HH
Q 009663 281 LDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV---TF 357 (529)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~---~~ 357 (529)
+-|+..+...++.+..-.|.++-..+++..+..-+- .-+.+--++++..+.. ....|+.. -+
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------------t~r~~l~eeil~~L~~---~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH------------TFRSDLREEILMLLAR---DKLHPLTPEREQL 493 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh------------hhhHHHHHHHHHHHhc---CCCCCCChHHHHH
Confidence 667777777777777777777766666655442221 1112223344444443 33344322 23
Q ss_pred HHHHHHHhCCCcHHH-HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHH
Q 009663 358 ISLLNACTHGGLVEQ-GRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPDEVVWGSLL 429 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~ 429 (529)
..+..-|. -++.+ ....-.++. ....+....+...-.+.+.|+.++|.++|.-+ +..|......-++
T Consensus 494 ~~~~ak~a--ad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 494 QVAFAKCA--ADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHH--HHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 33322222 12222 222223333 23445667788888899999999999988766 2344455555677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+.-...++...|+.+++-+...+
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Confidence 77788889999999999997765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-13 Score=123.48 Aligned_cols=365 Identities=12% Similarity=0.083 Sum_probs=227.4
Q ss_pred hHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHH
Q 009663 116 IYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYT 192 (529)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~ 192 (529)
||......|.+.+.++-|..+|...++-- +-+...|......--..| ..+.-..+|++... | ....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hg-t~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHG-TRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 34444444444444444444444444431 223334444443333444 44444455544443 2 2234444455555
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHH
Q 009663 193 RVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLG 269 (529)
Q Consensus 193 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 269 (529)
..|++..|..++....+ .+...|-.-+.......+++.|..+|.+.. ...|+...|.--+...--.+..++|
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar-----~~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR-----SISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh-----ccCCcchhhHHHhHHHHHhhhHHHH
Confidence 66666666666665443 234456666666666677777777777666 4456666555555555555667777
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcc
Q 009663 270 KVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQ 346 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 346 (529)
+++++..++.-+ .-...|-.+...+-+.++.+.|...|..-.+. .+..|..+...-.+.|...+|..++++..
T Consensus 671 ~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar--- 746 (913)
T KOG0495|consen 671 LRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR--- 746 (913)
T ss_pred HHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH---
Confidence 777766666532 23345666666677777777777776654432 34466666666666777777777777765
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 009663 347 DHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG 426 (529)
Q Consensus 347 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 426 (529)
..-+-+...|...|+.-.+.|+.+.|..+..++.+. ++.+...|..-|....+.++-......+++. ..|+.+..
T Consensus 747 -lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVll 821 (913)
T KOG0495|consen 747 -LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLL 821 (913)
T ss_pred -hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHH
Confidence 333345566777777777777777777777666653 3445556666666666666655555444443 45677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEE
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEV 498 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 498 (529)
++...+....+++.|.+.|.+++..+|++..+|..+...+.+.|.-++-.+++++...-. |+-|..|.-+
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 888888889999999999999999999999999999999999999998889998886543 4445566433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-14 Score=127.92 Aligned_cols=413 Identities=15% Similarity=0.104 Sum_probs=228.9
Q ss_pred CchhHHHHHHHHHhhcCCChhHHHHHhhcCCC----CChhH-HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcch-
Q 009663 43 QTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT----PNTYL-YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFI- 116 (529)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~- 116 (529)
.+-.+...|.+-|.... -..+|+..++-+.. ||.-. -..+-..+.+. +.+.+|+++|+..+..- |..+..+
T Consensus 199 ltfsvl~nlaqqy~~nd-m~~ealntyeiivknkmf~nag~lkmnigni~~kk-r~fskaikfyrmaldqv-psink~~r 275 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEAND-MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKK-REFSKAIKFYRMALDQV-PSINKDMR 275 (840)
T ss_pred chHHHHHHHHHHhhhhH-HHHHHhhhhhhhhcccccCCCceeeeeecceeeeh-hhHHHHHHHHHHHHhhc-cccchhhH
Confidence 34456667777777776 78888888887752 33221 12234456677 88999999998877652 2333333
Q ss_pred ---HHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---------------
Q 009663 117 ---YPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--------------- 178 (529)
Q Consensus 117 ---~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--------------- 178 (529)
.+.+.-.+.+.|.++.|..-|+...+. .|+..+-..|+-++..-| +-++..+.|.+|..
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 333334578999999999999999875 577777666777777788 99999999999864
Q ss_pred -CChhhHHHHH-----HHHHhcC--CHHHHHHHHhhCC----CCChh-------------hHHH--------HHHHHHhC
Q 009663 179 -RNVVSWTAMI-----SGYTRVG--DIKNAASLFDSMP----DRDVP-------------AWNS--------VIAGCTQN 225 (529)
Q Consensus 179 -~~~~~~~~ll-----~~~~~~g--~~~~A~~~~~~~~----~~~~~-------------~~~~--------li~~~~~~ 225 (529)
|+....+.-| .-+-+.. +-++++-.-.++. .|+-. .+.. -...|.+.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 2222222222 1122211 1222222222222 22211 0111 12357788
Q ss_pred CChhHHHHHHHHhhhcccCCCCCCHHHHHHH--HHHhh----------------------------------ccCCchHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNIRPNQVTLVCA--LSAIG----------------------------------HTGMLQLG 269 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l--l~~~~----------------------------------~~~~~~~a 269 (529)
|+++.|+++++-..+. ..+.-+..-+.+ +..+. ..|++++|
T Consensus 433 ~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred cCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 9999999888877643 222211111111 11111 22445555
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcc
Q 009663 270 KVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQ 346 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 346 (529)
...|++.+...-......|| +.-.+-..|++++|+++|-++. ..+......+...|....+...|++++-+..
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~--- 585 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--- 585 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---
Confidence 55555554433222222222 1223344555555555554432 2344445555555656666666666665552
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 009663 347 DHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVW 425 (529)
Q Consensus 347 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 425 (529)
.-++-|.....-|...|-+.|+-.+|.+.+-.--. -++.+..+..-|...|....-++++..+|++. -+.|+..-|
T Consensus 586 -slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 -SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred -ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 22222444555555666666666666555443321 22335555555666666666666666666665 456666666
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 426 GSLLNGC-KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 426 ~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
..++..| .+.|++..|.++|+...+..|.+......|.+.+...|.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 6665543 346666666666666666666666666666666665554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=145.53 Aligned_cols=258 Identities=14% Similarity=0.156 Sum_probs=114.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
.+...+.+.|++++|+++++..... ..+|+...|- .+...+...++.+.|...++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~---~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK---IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-
Confidence 3466778889999999999654322 2245444444 4444566778899999999999887654 56667777777
Q ss_pred HhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 296 GKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
...+++++|.+++...-+ ++...+..++..+...++++++..+++.+.. .....++...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 688999999998876533 3455777888889999999999999999764 133456777888888999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 374 RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
...++++.+. .| +......++..+...|+.+++.++++.. ..+.|+..+..+..++...|++++|...++++.+
T Consensus 166 ~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 9999999865 67 5788889999999999999988888777 2245667788999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
.+|+|+.+...++.++...|+.++|.++.+++..
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999887653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-14 Score=136.00 Aligned_cols=133 Identities=20% Similarity=0.316 Sum_probs=106.5
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHcC
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM-K--IEPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p~~~~~~~l~~~~~~~g 436 (529)
-++.+.+..+....+....... .+.| +...|.-+.++|.+.|++.+|+.+|..+ . ..-+...|..+..+|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3444555555555555555544 5444 5778999999999999999999999998 2 2235779999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
.+++|++.|++++...|++..+...|+..+.+.|+.++|.+++..+...+....+++.|
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999987443333355555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-12 Score=116.82 Aligned_cols=433 Identities=14% Similarity=0.141 Sum_probs=304.7
Q ss_pred ChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 009663 76 NTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETAL 155 (529)
Q Consensus 76 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 155 (529)
+...|-....--..+ +++..|.++|++.+.-. ..+...|..-+..=.+...+..|..+++..+..-+..| ..|-..
T Consensus 72 ~~~~WikYaqwEesq-~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQ-KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHH
Confidence 334444444444455 78888999999888765 55666677777777788888889999988887643323 445555
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhC--CCCChhhHHHHHHHHHhCCChhHH
Q 009663 156 VNSYSRSGNDIGIARKLFDEMSD--RNVVSWTAMISGYTRVGDIKNAASLFDSM--PDRDVPAWNSVIAGCTQNGLFSDA 231 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 231 (529)
+.+--..| ++..|.++|+.-.+ |+..+|++.|+.-.+-+.++.|..++++. ..|++.+|-.....-.+.|+..-|
T Consensus 148 ~ymEE~Lg-Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 148 IYMEEMLG-NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHHhc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 55566668 88999999988765 88889999999888888999999999884 468888888888888888888888
Q ss_pred HHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHhCCCHHHHHHH---
Q 009663 232 ISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLD-SFISNALIDMYGKCGSLKEARRA--- 307 (529)
Q Consensus 232 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~--- 307 (529)
..+|........ .-.-+...+.+...--.....++.|..+|.-+++.-+... ...|..+...--+-|+.....+.
T Consensus 227 R~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 888887764300 1111222333333334556678888888888877643321 23444444444445554443333
Q ss_pred -----HhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH--H---HHHH-----HHHHhCCCc
Q 009663 308 -----FDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV--T---FISL-----LNACTHGGL 369 (529)
Q Consensus 308 -----~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~--~---~~~l-----~~~~~~~~~ 369 (529)
|+.+... |..+|--.+..-...|+.+...++|+++. .+++|-.. . |.-| +-.-....+
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI----anvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI----ANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH----ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2333333 44577777888888899999999999988 67777332 1 1111 111234678
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH----HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009663 370 VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLL----GRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
++.+.++|+...+ +-| ...||..+--.| .++.++..|.+++... |..|...++...|..-.+.++++....
T Consensus 382 ~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 8999999998884 455 455666555444 4778899999999887 889999999999999889999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHH
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALE 523 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (529)
+|++.++.+|.+..+|...+..-...|+++.|..+|+-..+...-..|..-|- +|+.-.-.-+..+.+.++++
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk-------aYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK-------AYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH-------HhhhhhhhcchHHHHHHHHH
Confidence 99999999999999999999888889999999999998887765444554442 44444445566677888888
Q ss_pred HHHhc
Q 009663 524 SMVAL 528 (529)
Q Consensus 524 ~~~~~ 528 (529)
+|++.
T Consensus 532 rlL~r 536 (677)
T KOG1915|consen 532 RLLDR 536 (677)
T ss_pred HHHHh
Confidence 87653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-14 Score=134.47 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=220.8
Q ss_pred cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 194 VGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
.-+..+|...|..++.. ...+...+..+|...+++++|.++|+.+.+. .+-..-+..+|.+.+.-+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~-~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI-EPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccchhHHHHHHHHHHh----hHHH
Confidence 34678889999886542 3355667789999999999999999999843 11122256677777764432 1223
Q ss_pred HHHH-HHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHhhcc
Q 009663 271 VIHG-YVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEMMRCQ 346 (529)
Q Consensus 271 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 346 (529)
..+. .+.+.. +..+.+|.++..+|.-.++.+.|++.|++..+-|. .+|+.+..-+.....+|+|...|+...
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--- 482 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--- 482 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence 3332 233332 34688999999999999999999999999876554 488999999999999999999999984
Q ss_pred cCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 009663 347 DHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DE 422 (529)
Q Consensus 347 ~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 422 (529)
++.|.. ..|..+...|.++++++.|+-.|+++. .+.| +......+...+.+.|+.|+|+++++++ ...| |+
T Consensus 483 --~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 483 --GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred --cCCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 455533 356667788999999999999999998 6678 5777788889999999999999999998 4444 66
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..-...+..+...+++++|++.+++++++-|++..++..++..|.+.|+.+.|+.-|.=+.+...
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66666777788899999999999999999999999999999999999999999988866654433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-11 Score=119.80 Aligned_cols=458 Identities=10% Similarity=0.027 Sum_probs=271.1
Q ss_pred HHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhc---CCCCChhHHHHHHHHHhcCCCChHH
Q 009663 20 LERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDH---LTTPNTYLYTAMITAYASQPAHASS 96 (529)
Q Consensus 20 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~~ 96 (529)
+-+.|+.++|..|...++++. +..+..|.+|-..|-.+| +.+++...+-. +.+.|...|-.+-....+. |++++
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~-~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQL-GNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-ccHHH
Confidence 345699999999999999884 557778999999999999 99999887643 3466778899888888888 99999
Q ss_pred HHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCCHHHHHHH
Q 009663 97 AFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETA----LVNSYSRSGNDIGIARKL 172 (529)
Q Consensus 97 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----l~~~~~~~g~~~~~A~~~ 172 (529)
|.-.|.+.++.. +++-..+-.-...|-+.|+...|.+.+.++....++.|..-... .+..+...+ +-+.|.+.
T Consensus 226 A~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKA 302 (895)
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 999999999987 67777777777889999999999999999998865444443333 345566777 77888888
Q ss_pred HhhCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------------C-----ChhhHH
Q 009663 173 FDEMSD-----RNVVSWTAMISGYTRVGDIKNAASLFDSMPD--------------------------R-----DVPAWN 216 (529)
Q Consensus 173 ~~~~~~-----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------------------------~-----~~~~~~ 216 (529)
++.... -+...++.++..+.+...++.|......+.. + +...+
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 887765 3456778888888888888887766655432 0 11110
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCC--CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNI--RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDM 294 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (529)
.++-++......+....+....... .+ .-+...|.-+..++...|++..|+.++..+.......+..+|-.+..+
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~---n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVED---NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHh---cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 1111222222222222222222221 22 223334555555556666666666666555555444445555555556
Q ss_pred HHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhh-----cccCCCCCCHHHHHHHHHHHhC
Q 009663 295 YGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMR-----CQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 295 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
|...|.++.|.+.|+.+... +...--.|...+.+.|+.++|.+++..+.. ....+..|+..........+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 66666666666655554332 222333444555555666665555555321 0001122222222222222223
Q ss_pred CCcHHHHHHHHHHhH--------------------------------------------------------------Hhc
Q 009663 367 GGLVEQGRAYFKLMT--------------------------------------------------------------KTY 384 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~--------------------------------------------------------------~~~ 384 (529)
.|+.++-..+-..+. ...
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 333222111111111 000
Q ss_pred CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 009663 385 RIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEPDEV----VWGSLLNGCKIYGRTDFAEFAVKKLIEI--- 451 (529)
Q Consensus 385 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 451 (529)
++.-+ -..+.-++.++++.|++++|+.+...+ . +.-+.. .-...+.++...+++..|...++-+...
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 11111 134455677788888888888888776 1 111222 2234455567788888888888888775
Q ss_pred --CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 452 --DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 452 --~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+|.-...|+.......+.|+-.--.+++..+.....
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~ 736 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNK 736 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 554455555455555566655555555555444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-11 Score=113.31 Aligned_cols=461 Identities=13% Similarity=0.114 Sum_probs=304.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009663 30 KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVR 106 (529)
Q Consensus 30 ~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 106 (529)
.+|+....++ +|.++.. -.+..... +.+.|+.++.+.. +.+...|. ++++. .-++.|..+++..++
T Consensus 366 ~RVlRKALe~-iP~sv~L----WKaAVelE-~~~darilL~rAveccp~s~dLwl----AlarL-etYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRL----WKAAVELE-EPEDARILLERAVECCPQSMDLWL----ALARL-ETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh-CCchHHH----HHHHHhcc-ChHHHHHHHHHHHHhccchHHHHH----HHHHH-HHHHHHHHHHHHHHh
Confidence 3455555544 3333333 33333444 5666777777665 33444443 34444 667788888888776
Q ss_pred CCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----
Q 009663 107 RGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIV----KSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---- 178 (529)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---- 178 (529)
.= +.+...|.+....=-..|+.+....+.++-+ ..|+..+..-|..=...|-..| ..-.+..+......
T Consensus 435 ~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag-sv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 435 II--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG-SVITCQAIIRAVIGIGVE 511 (913)
T ss_pred hC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhhccc
Confidence 52 6677777777776677777777777665543 3466667666666666666667 66666666655543
Q ss_pred --CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHH
Q 009663 179 --RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTL 253 (529)
Q Consensus 179 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~ 253 (529)
.--.+|+.-...|.+.+.++-|..+|....+ .+...|......--..|..+....+|++.... ++-....+
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----~pkae~lw 587 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----CPKAEILW 587 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCcchhHH
Confidence 2235677777778888888888877776554 24455666665555667777777788777643 33334444
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCC
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQ 331 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 331 (529)
.......-..|++..|..++..+.+..+. +..++-.-+.....+..++.|+.+|.+... +....|..-+......++
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 44555566678888888888887777654 566777777777788888888888876553 334466666666666778
Q ss_pred hhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 410 (529)
.++|.+++++..+ ..|+. ..|..+...+.+.++.+.|...|..-.+ .++..+..|-.|.+.=.+.|.+-.|.
T Consensus 667 ~eeA~rllEe~lk-----~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 667 VEEALRLLEEALK-----SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHHHHHHHHHHH-----hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHH
Confidence 8888888877753 33443 4566666777777777777777766543 22334666777777777777888888
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------------------Cchh
Q 009663 411 EVVKGMK-IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN------------------------------NGGY 458 (529)
Q Consensus 411 ~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------------------------~~~~ 458 (529)
.++++.. .+| +...|-..+..-.+.|+.+.|..+..++++.-|+ |+.+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV 819 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV 819 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence 8887771 234 6777777788878888888888777777664444 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHH
Q 009663 459 GIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525 (529)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (529)
...++..+....++++|++.|.+..+.+.. -|-.|+ .|+.....||.-++-.+++++.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d--~GD~wa-------~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPD--NGDAWA-------WFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCc--cchHHH-------HHHHHHHHhCCHHHHHHHHHHH
Confidence 888888999999999999999998877654 333443 3455555666655555555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-13 Score=121.90 Aligned_cols=403 Identities=10% Similarity=0.076 Sum_probs=267.4
Q ss_pred chHHHHHHHHHHhCCCCchhHH-HHHHHHHhhcCCChhHHHHHhhcCC----CC----ChhHHHHHHHHHhcCCCChHHH
Q 009663 27 NHLKQLQSFLTTLGQSQTNFYA-FKLVRFCTLKLSNLTYARFIFDHLT----TP----NTYLYTAMITAYASQPAHASSA 97 (529)
Q Consensus 27 ~~~~~i~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~A~~~~~~~~----~~----~~~~~~~ll~~~~~~~~~~~~a 97 (529)
.++...++.+.+....|+.-.. -.+-..+.+.+ .+.+|.+.+.-.. .- .+...|.+-..+.+. |.++.|
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~-gqy~da 295 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA-GQYDDA 295 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec-ccchhh
Confidence 4455566667776666655432 22334566666 8889988875432 21 223455555677788 999999
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC------------CchhHHHHHH-----HHHH
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE------------QYPVVETALV-----NSYS 160 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~l~-----~~~~ 160 (529)
+..|+...+. .|+..+-..++-++...|+-++..+.|..|+..... |+....+..+ .-+-
T Consensus 296 insfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 296 INSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred HhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 9999999887 577666556666667778999999999999865322 2222232222 1222
Q ss_pred hcC-CCHHHHHHHHhhCCC----CChh-------------hHHH--------HHHHHHhcCCHHHHHHHHhhCCCCChhh
Q 009663 161 RSG-NDIGIARKLFDEMSD----RNVV-------------SWTA--------MISGYTRVGDIKNAASLFDSMPDRDVPA 214 (529)
Q Consensus 161 ~~g-~~~~~A~~~~~~~~~----~~~~-------------~~~~--------ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (529)
+.+ .+.+++.-.--++.. |+-. .+.. -...+.++|+++.|++++.-+...|..+
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 221 012222222222222 2211 0111 1223678999999999988776532211
Q ss_pred -----------------------------------HHHHH-----HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH
Q 009663 215 -----------------------------------WNSVI-----AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV 254 (529)
Q Consensus 215 -----------------------------------~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~ 254 (529)
||.-. ..-...|++++|.+.|++.... ...-....|+
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---dasc~ealfn 529 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---DASCTEALFN 529 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---chHHHHHHHH
Confidence 11100 0112357899999999998633 2222222233
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCC
Q 009663 255 CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN---SKKRLTSWNSMINSFALHGQ 331 (529)
Q Consensus 255 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~ 331 (529)
+- -.+-..|++++|++.|-++...- ..+..+...+...|....+...|++++.+. ...|+.....|...|-+.|+
T Consensus 530 ig-lt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IG-LTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hc-ccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 22 23567899999999987765432 235667778899999999999999999765 45688899999999999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCChHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL-LGRAGRFEEAL 410 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~ 410 (529)
-..|.+++-+-- .-++.+..|..-|...|....-+++++.+|++.. -+.|+..-|..++.. +.+.|++.+|+
T Consensus 608 ksqafq~~ydsy----ryfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 608 KSQAFQCHYDSY----RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hhhhhhhhhhcc----cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999887663 3345577888888888888888999999999986 679999999887755 56789999999
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 411 EVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 411 ~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
++++.. +++.|..++..|+..+...|- .++.+.-++
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 999998 666688888888888777664 234444333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-13 Score=129.56 Aligned_cols=275 Identities=13% Similarity=0.058 Sum_probs=181.3
Q ss_pred cCCHHHHHHHHhhCCCC--ChhhHHHH-HHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH--HHHHHhhccCCchH
Q 009663 194 VGDIKNAASLFDSMPDR--DVPAWNSV-IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV--CALSAIGHTGMLQL 268 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~ 268 (529)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.|.+.+.++. ...|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~-----~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA-----ELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 46777777666654432 22222222 344467777777777777776 3355543332 22445667777777
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHHHcCChhHHHH
Q 009663 269 GKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL-----------TSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~ 337 (529)
|...++.+.+..+. +..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777766543 456666777777777777777777766654321 123333443344455566666
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 009663 338 VFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM- 416 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 416 (529)
+++...+ ..+.+......+...+...|+.++|..++++..+. .|+.... ++.+....++.+++++.++..
T Consensus 251 ~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 251 WWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 6666532 23346667777888888888999998888888743 4554322 233334558888888888877
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+..| |+....++...|.+.+++++|.+.|+++.+..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455 456677888888889999999999999998888 456667788888899999999888876644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-12 Score=117.34 Aligned_cols=348 Identities=12% Similarity=0.104 Sum_probs=246.5
Q ss_pred CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcch
Q 009663 41 QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFI 116 (529)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 116 (529)
.+-++.++..+|.+.|+-. ..+.|.+++++.. +-+..+||.+|.+..-. .-.+++.+|..... .||..|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-----~~K~Lv~EMisqkm-~Pnl~T 275 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS-----VGKKLVAEMISQKM-TPNLFT 275 (625)
T ss_pred cCCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-----ccHHHHHHHHHhhc-CCchHh
Confidence 4557789999999999998 9999999999875 45778899998776544 23789999999998 999999
Q ss_pred HHHHHHhCccCCCchHH----HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH-HHHHHHHhhCCC-----------C-
Q 009663 117 YPHVLKSCPDVLESRGT----KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI-GIARKLFDEMSD-----------R- 179 (529)
Q Consensus 117 ~~~l~~~~~~~~~~~~a----~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~~A~~~~~~~~~-----------~- 179 (529)
+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.+ +. ..|..++.++.. |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~-dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES-DPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC-CchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999988765 578889999999999999999999999988 66 345555555532 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPD--------RD---VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP 248 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p 248 (529)
|..-|..-+..|.+..+.+-|.++..-+.. ++ ..-|..+....++....+.-+.+|+.|... -+-|
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~---~y~p 431 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS---AYFP 431 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---eecC
Confidence 445567777888888999888887665543 22 123566777788888999999999999655 7889
Q ss_pred CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 009663 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFAL 328 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 328 (529)
+..+...++++....+.++-.-+++..++..|...+...-.-+...+++.. ..++...-..+-...++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAK 499 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999988875443333333333333322 01211111111111111
Q ss_pred --cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhc
Q 009663 329 --HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG---CLVDLLGRA 403 (529)
Q Consensus 329 --~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~ 403 (529)
..-.+.....-.++.. ..++| ...+.++-.+.+.|..++|.+++..+.+.+.-.|-....+ -+++.-.+.
T Consensus 500 ~aad~~e~~e~~~~R~r~---~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRA---QDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHhhHHHHHh---ccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 0111112222334433 44444 4456666677889999999999998865544344333344 566666777
Q ss_pred CChHHHHHHHHhC
Q 009663 404 GRFEEALEVVKGM 416 (529)
Q Consensus 404 g~~~~A~~~~~~~ 416 (529)
+....|...++-|
T Consensus 575 ~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 575 NSPSQAIEVLQLA 587 (625)
T ss_pred CCHHHHHHHHHHH
Confidence 7888888887776
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-12 Score=116.33 Aligned_cols=328 Identities=14% Similarity=0.101 Sum_probs=238.5
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-hHHHHHHHHH
Q 009663 145 FEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVP-AWNSVIAGCT 223 (529)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~ 223 (529)
...|...+-.....+-+.| ..+.|...|......-+..|.+.+....-..+.+.+..+.......+.. .=-.+..++.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~-~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELG-LLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred ccchhHHHHHHHHHHHhhc-hHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 3445555554555666677 7888888888777655555555555444445555554444444332211 1122345666
Q ss_pred hCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC--CCccHHHHHHHHHHhCCCH
Q 009663 224 QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD--LDSFISNALIDMYGKCGSL 301 (529)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 301 (529)
...+.+++..-....... |++-+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.-....++
T Consensus 239 el~q~~e~~~k~e~l~~~---gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSV---GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHhc---cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 666778887777777644 56655555555555667888999999999999987541 2444555544322221121
Q ss_pred H-HHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 302 K-EARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 302 ~-~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
. -|..++ .+.+-.+.|..++.+-|.-.++.++|..+|++..+ +.|. ...|+.+.+-|....+...|++-++.
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-----LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK-----LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 122222 23333455777888889999999999999999965 4554 45678888889999999999999999
Q ss_pred hHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 380 MTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 380 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
++ .+.| |-..|-.|.++|.-.+...=|+-+|++. .++| |...|.+|+.+|.+.++.++|+++|.++...+-.+.
T Consensus 390 Av---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 390 AV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 98 5566 7889999999999999999999999998 6667 799999999999999999999999999999887788
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.++..|+.+|.+.++.++|...+++..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999888763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-12 Score=116.11 Aligned_cols=393 Identities=11% Similarity=0.075 Sum_probs=238.2
Q ss_pred hcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHH
Q 009663 57 LKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGT 133 (529)
Q Consensus 57 ~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (529)
..+ ++..|+.+|++.. ..+...|-..+..-.++ .....|..++++.+..-. ..|. .|...+..=-..|++..|
T Consensus 85 sq~-e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lP-RVdq-lWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQK-EIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILP-RVDQ-LWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcc-hHHH-HHHHHHHHHHHhcccHHH
Confidence 344 7788888888876 46667777777777788 888899999988877531 2232 333333334556888899
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 009663 134 KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS--DRNVVSWTAMISGYTRVGDIKNAASLFDSMPDR- 210 (529)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 210 (529)
.++|+.-.+ ..|+...|++.+..-.+.+ .++.|..+++... +|++.+|--...--.+.|+...|.++|+...+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999988776 5788999999999888888 8999999998876 488888888888888888888888888765431
Q ss_pred -----ChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc----------------------------------------CC
Q 009663 211 -----DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS----------------------------------------DN 245 (529)
Q Consensus 211 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------------------------------~~ 245 (529)
+...+.+....-.++..++.|.-+|+-.....+ ..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 122333333333334444444444443332100 01
Q ss_pred CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCcc-HHHHHHHH--------HHhCCCHHHHHHHHhhcCC---
Q 009663 246 IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSF-ISNALIDM--------YGKCGSLKEARRAFDRNSK--- 313 (529)
Q Consensus 246 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~--------~~~~g~~~~A~~~~~~~~~--- 313 (529)
.+-|-.+|--.+..-...|+.+...++|+.++..-++.... .+.-.|-. -....+.+.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 12233444444444455566666666666655442221111 11111111 1124455555665544322
Q ss_pred CChh----HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-
Q 009663 314 KRLT----SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP- 388 (529)
Q Consensus 314 ~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p- 388 (529)
.... .|......-.+..+...|.+++... -|.-|-..+|...|..-.+.++++.+..++++.. ...|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A-----IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe 469 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA-----IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPE 469 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHH-----hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChH
Confidence 1111 2333333444566667777777666 5666666677777766667777777777777766 3345
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
+..+|......=...|+.+.|..+|+-.-..| ....|.+.|+.-...|.++.|..+|+++++..+ +..+|...+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~ 548 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAK 548 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHH
Confidence 55666666666667777777777776652233 244566666666667777777777777777665 4445555544
Q ss_pred H
Q 009663 465 I 465 (529)
Q Consensus 465 ~ 465 (529)
.
T Consensus 549 f 549 (677)
T KOG1915|consen 549 F 549 (677)
T ss_pred H
Confidence 3
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-12 Score=115.48 Aligned_cols=215 Identities=18% Similarity=0.152 Sum_probs=175.8
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
+.-.|+.-.+..-|+..++....++. .|-.+..+|....+.++.+..|++.. ..|..+|..-...+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 45568889999999999988765433 37778888999999999999998755 346678888888888899999999
Q ss_pred HHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 337 CVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.-|++.+. +.| +...|..+.-+..+.+.+++++..|++..++ ++..+.+|+.....+...+++++|.+.|+.
T Consensus 415 aDF~Kai~-----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 415 ADFQKAIS-----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHhh-----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999964 555 4466777777777889999999999999875 355688999999999999999999999988
Q ss_pred C-CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 416 M-KIEPD---------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 416 ~-~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
. .+.|+ +.+--.++..-. .+++.+|+.+++++.+++|....++..|+....+.|+.++|+++|++-.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7 44443 222233333323 3899999999999999999999999999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=128.79 Aligned_cols=275 Identities=13% Similarity=0.153 Sum_probs=212.1
Q ss_pred CHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChhHHHHHH
Q 009663 165 DIGIARKLFDEMSD--RNV-VSWTAMISGYTRVGDIKNAASLFDSMPD------RDVPAWNSVIAGCTQNGLFSDAISFF 235 (529)
Q Consensus 165 ~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (529)
...+|...|..+++ +|. .+...+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 57788888888654 333 4455667788888888888888888765 366677777765533 2233333
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 009663 236 RRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR 315 (529)
Q Consensus 236 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 315 (529)
.+-.-. .-+-.+.+|.++..+|.-.++.+.|++.|+++++.++. ...+|+.+.+-+.....+|+|...|+.....|
T Consensus 410 aq~Li~---~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 410 AQDLID---TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHh---hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 332211 23445678999999999999999999999988877542 67788988899999999999999999887766
Q ss_pred hh---HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-Ch
Q 009663 316 LT---SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QI 390 (529)
Q Consensus 316 ~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~ 390 (529)
+. +|.-+...|.+.++++.|+-.|+++. .+.| +.+....+...+.+.|+.++|+++++++. .+.| |+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-----~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~ 557 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-----EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNP 557 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh-----cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCc
Confidence 65 56667788999999999999999995 4566 45566677778888999999999999988 4455 55
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
..--.-+..+...+++++|+..++++ .+.|+ ..++..++..|.+.|+.+.|+.-|.-+.+++|.-
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 55555677788899999999999999 56675 5567777788999999999999999999999863
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-12 Score=115.57 Aligned_cols=428 Identities=11% Similarity=0.014 Sum_probs=285.2
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcC--CCCChhHHHHHHHHHhcCCCChHHHHHHHH----HHHHC-----
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHL--TTPNTYLYTAMITAYASQPAHASSAFSLYR----DMVRR----- 107 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~----~m~~~----- 107 (529)
.++.-||....-+.+.+.-.| ..+.|..+...- ...|..+.......+.+. .++++|..++. .+...
T Consensus 43 ~~l~~dp~d~~~~aq~l~~~~-~y~ra~~lit~~~le~~d~~cryL~~~~l~~l-k~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 43 AGLTNDPADIYWLAQVLYLGR-QYERAAHLITTYKLEKRDIACRYLAAKCLVKL-KEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred HhccCChHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhcccchhhcchhhcch
Confidence 355677777778888888887 888888887653 467888888888888888 99999999988 32111
Q ss_pred ---CCCCCCcch----HHHHHHh-------CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 009663 108 ---GQPQPNQFI----YPHVLKS-------CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLF 173 (529)
Q Consensus 108 ---~~~~~~~~~----~~~l~~~-------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 173 (529)
+...+|..- .+.-... |....+.++|...+.+.+.. |+..+.++...-...=--..+-..+|
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELL 196 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHH
Confidence 000111111 1111122 23334555555555555443 33333332222211100112223333
Q ss_pred hhCCC-----CChhhHHHHHHHH-HhcCCHHHHHHHH--hhC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 174 DEMSD-----RNVVSWTAMISGY-TRVGDIKNAASLF--DSM--PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 174 ~~~~~-----~~~~~~~~ll~~~-~~~g~~~~A~~~~--~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
+.+.- .+......+.... ++.-+.+ ....- +.+ .+.++........-+...+++.+..++++.....
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-- 273 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-- 273 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--
Confidence 32110 1111111111110 0000000 00000 000 0134555666667788899999999999998743
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHH
Q 009663 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWN 320 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~ 320 (529)
.++....+..-|.++...|+..+-..+=.++++.-+ ....+|-++.-.|.-.|+..+|++.|.+...-|. ..|-
T Consensus 274 --dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 274 --DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred --CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH
Confidence 455566666667788899988887777777887654 4677888888888899999999999987655443 4899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDL 399 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 399 (529)
.....|+..|..++|+..+..+.++-..--.| +--+.--|.+.++.+.|.++|..+. ++-| |+..++-+.-.
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVV 423 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhhe
Confidence 99999999999999999998875421111222 3334445778899999999999987 7777 67788888878
Q ss_pred HHhcCChHHHHHHHHhC--C---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 400 LGRAGRFEEALEVVKGM--K---IEP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~--~---~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
....+.+.+|..+|+.. . +.+ -..+++.|+.+|.+.+.+++|+..+++++.+.|.++.++..++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 88899999999999876 1 111 24568889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhC
Q 009663 471 KWDEVRKVRKMLKDR 485 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~ 485 (529)
+.+.|++.|.+..-.
T Consensus 504 nld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 504 NLDKAIDHFHKALAL 518 (611)
T ss_pred ChHHHHHHHHHHHhc
Confidence 999999999877533
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-11 Score=118.41 Aligned_cols=274 Identities=14% Similarity=0.055 Sum_probs=193.5
Q ss_pred cCCCHHHHHHHHhhCCCC--ChhhHHHH-HHHHHhcCCHHHHHHHHhhCCCC--ChhhHH--HHHHHHHhCCChhHHHHH
Q 009663 162 SGNDIGIARKLFDEMSDR--NVVSWTAM-ISGYTRVGDIKNAASLFDSMPDR--DVPAWN--SVIAGCTQNGLFSDAISF 234 (529)
Q Consensus 162 ~g~~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~g~~~~A~~~ 234 (529)
.| +++.|.+.+....+. ++..+..+ .....+.|+.+.|.+.+.++.+. +..... .....+...|++++|...
T Consensus 97 eG-d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EG-DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CC-CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46 677777666655442 22222222 33346677777777777776542 222222 224567777888888888
Q ss_pred HHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHhCCCHHHHHH
Q 009663 235 FRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSF-------ISNALIDMYGKCGSLKEARR 306 (529)
Q Consensus 235 ~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~ 306 (529)
++++.+. .| +......+...+.+.|+++++..++..+.+.+..++.. +|..++.......+.+...+
T Consensus 176 l~~~~~~-----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 176 VDKLLEV-----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHhc-----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8777632 34 44566666777777788888888888777766543221 22333433444455667777
Q ss_pred HHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 307 AFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 307 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
+++.+.+ .++.....+...+...|+.++|..++++..+ ..|+... .++.+....++.+++.+..+...+.
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-----~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-----RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh
Confidence 7776653 4667888899999999999999999998864 3444422 2334445669999999999999865
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 384 YRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 384 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
.| |+..+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 324 ---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45 5777889999999999999999999998 77899999999999999999999999999999774
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-11 Score=118.08 Aligned_cols=272 Identities=13% Similarity=0.016 Sum_probs=119.1
Q ss_pred CHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh--hhHHHHHHHHHhCCChhHHHHHHHH
Q 009663 165 DIGIARKLFDEMSD--RNVV-SWTAMISGYTRVGDIKNAASLFDSMPD--RDV--PAWNSVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 165 ~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~ 237 (529)
+++.|.+.+.+..+ |+.. .+-....+..+.|+.+.|.+.+.+..+ |+. .........+...|+++.|...++.
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~ 178 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDK 178 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555544433 2211 122223344444555555555554321 221 1222234455555666666666665
Q ss_pred hhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH---H----hCCCHHHHHHHHh
Q 009663 238 MGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY---G----KCGSLKEARRAFD 309 (529)
Q Consensus 238 m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~ 309 (529)
+.+. .| +...+..+...+...|+++.+..++..+.+.++.+.......-..++ . .....+...+.++
T Consensus 179 l~~~-----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 179 LLEM-----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5532 23 33344455555556666666666666555554322111111000111 1 1111223333333
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHH---HHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 310 RNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT---FISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 310 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
.... .+...+..+...+...|+.++|.+++++..+ ..|+... ...........++.+.+.+.++...+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~-----~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK-----KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh-----hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 3332 2444555555555666666666666655543 2222221 011111122234455555555554433
Q ss_pred cCCCC-Ch--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 384 YRIEP-QI--EHYGCLVDLLGRAGRFEEALEVVKG--M-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 384 ~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
.| ++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 ---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 ---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 22 3344555555555555555555552 2 334555555555555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-11 Score=107.64 Aligned_cols=358 Identities=13% Similarity=0.062 Sum_probs=251.8
Q ss_pred CCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCh-hhHHHHHH
Q 009663 111 QPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNV-VSWTAMIS 189 (529)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~-~~~~~ll~ 189 (529)
..|...+......+.+.|....|...|...+..- +-.-..|..|.... . +.+.+..+...+...+. -.=-.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t-~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---T-DIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---c-hHHHHHHHHhcCcccchHHHHHHHHH
Confidence 4555555555555677888888888887776532 22334444444433 2 45554444433332211 11122445
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCC
Q 009663 190 GYTRVGDIKNAASLFDSMPD---RDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGM 265 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~ 265 (529)
++....+.+++..-.+.... ++. ..-+....+.-...++++|+.+|+++.+. ++=---|..+|+.++-+-.....
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHHHhhhHH
Confidence 56666677777666555443 222 22223334556678999999999999854 11112266788877765433221
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
+.++.+-.-.--+..+.|...+.+.|.-.++.++|...|++..+-|. ..|+.+..-|....+...|++.++++
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 22222222111234566788888999999999999999998776554 48999999999999999999999999
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCC
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM--KIE 419 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 419 (529)
.+ -.+-|-..|..|.++|.-.+.+.-|.-+|++.. .++| |...|.+|.++|.+.++.++|.+.|.+. .-.
T Consensus 391 vd----i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 391 VD----INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred Hh----cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 74 233477889999999999999999999999988 5577 7899999999999999999999999988 224
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE-------IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+...+..+...+-+.++.++|.+.|++-++ .+|....+...|+..+.+.+++++|..+......-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 4668899999999999999999999999887 44555566677888899999999999887666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-11 Score=118.28 Aligned_cols=283 Identities=12% Similarity=-0.008 Sum_probs=203.3
Q ss_pred HhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHH--HHHHHHHHhhccCCc
Q 009663 192 TRVGDIKNAASLFDSMPD--RDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQV--TLVCALSAIGHTGML 266 (529)
Q Consensus 192 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~--~~~~ll~~~~~~~~~ 266 (529)
...|+++.|.+.+.+..+ |++ ..+-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCCH
Confidence 458999999999988765 332 33445567788899999999999998743 45543 333457778889999
Q ss_pred hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHH----HHHHHHHHcCChhHHHHHH
Q 009663 267 QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWN----SMINSFALHGQSENSICVF 339 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~~~~~~a~~~~ 339 (529)
+.|...++.+.+..+. +..+...+...+...|+++.|.+.+..+.+. +...+. .........+..++..+.+
T Consensus 170 ~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998753 5678889999999999999999999887754 222221 1111112233333333444
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEH---YGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
..+.+..+...+.+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 44432000112236778888889999999999999999999864 454331 111222223457888888888877
Q ss_pred -CCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 -KIEPD-E--VVWGSLLNGCKIYGRTDFAEFAVK--KLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 -~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
...|+ + ....++...+.+.|++++|.+.|+ .+.+..| ++..+..++..+.+.|+.++|.+++++...
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44553 4 567789999999999999999999 5777888 455577999999999999999999987643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=128.39 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHhCccCCCchHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCC
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSG-FEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR---NVVSWTAMISGYTRVGD 196 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~ 196 (529)
...+.+.|++++|.+++....... .+.+...|..+.......+ +.+.|.+.++++... ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~-~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLG-DYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc-ccccc
Confidence 444555555555555554333322 1223333333444444445 555555555555442 22233344433 45555
Q ss_pred HHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHH
Q 009663 197 IKNAASLFDSMPD--RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHG 274 (529)
Q Consensus 197 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 274 (529)
+++|.++++..-+ +++..+...+..+.+.++++++.++++.+... ...+++...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL--PAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544322 33444555555666666666666666665421 1233445555555556666666666666666
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 275 YVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
++++..+. +..+.+.++..+...|+.+++..+++... ..+...|..+..+|...|+.++|+.+|++..+ ..+
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~----~~p 245 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK----LNP 245 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH----HST
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc----ccc
Confidence 66665432 34455556666666666665444443322 23344555555555555666666666655532 112
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.|......+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 244444555555566666666655555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-11 Score=101.44 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=159.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNS 158 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (529)
.|-.=+..+. + .+.++|+++|-+|.+.. +-+..+..++.+.+.+.|..+.|+++++.+.++ ||...-..+
T Consensus 38 ~Yv~GlNfLL-s-~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~--- 107 (389)
T COG2956 38 DYVKGLNFLL-S-NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRL--- 107 (389)
T ss_pred HHHhHHHHHh-h-cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHH---
Confidence 3444444444 3 46777777777777654 445555666666677777777777777766653 221110000
Q ss_pred HHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHH
Q 009663 159 YSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRD---VPAWNSVIAGCTQNGLFSDAISFF 235 (529)
Q Consensus 159 ~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 235 (529)
.+...|..-|...|-+|.|+.+|..+.+.+ ......|+..|-+..+|++|++.-
T Consensus 108 -----------------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 108 -----------------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred -----------------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 011223344555556666666666655422 234556677777777777777777
Q ss_pred HHhhhcccCCCCCCH----HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc
Q 009663 236 RRMGMEVSDNIRPNQ----VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN 311 (529)
Q Consensus 236 ~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 311 (529)
+++.+. +-.+.. ..|.-+...+....+++.|..++.++.+.+.. .+.+--.+.+.+...|+++.|.+.++.+
T Consensus 165 ~~L~k~---~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 165 ERLVKL---GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHHc---CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 766543 222221 23445555555666777777777777766543 3444445667777777888887777777
Q ss_pred CCCChh----HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCC
Q 009663 312 SKKRLT----SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIE 387 (529)
Q Consensus 312 ~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 387 (529)
.+.|.. +...|..+|.+.|+.++....+.++.+ ....++ .-..+........-.+.|..++.+-..+ .
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~ 312 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR---K 312 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---C
Confidence 666543 556666777777777777777777654 322222 2233333333333445555555444433 5
Q ss_pred CChhHHHHHHHHHH
Q 009663 388 PQIEHYGCLVDLLG 401 (529)
Q Consensus 388 p~~~~~~~l~~~~~ 401 (529)
|+...+..|++.-.
T Consensus 313 Pt~~gf~rl~~~~l 326 (389)
T COG2956 313 PTMRGFHRLMDYHL 326 (389)
T ss_pred CcHHHHHHHHHhhh
Confidence 77666666666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-11 Score=105.08 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=146.4
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh--------HHHHHHHHHHHcCC
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLT--------SWNSMINSFALHGQ 331 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~~~ 331 (529)
|...|-+|.|+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+.. .|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444433221 12223344555555555555555554443322111 34445555666778
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 410 (529)
.+.|..++.+..+ ..|+.+ .-..+.+.....|+++.|.+.|+.+.+. +..--+.+...|..+|...|+.++..
T Consensus 196 ~d~A~~~l~kAlq-----a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 196 VDRARELLKKALQ-----ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHHh-----hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8889999988864 334332 2334566788899999999999999866 22223678888999999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-H--hcCCHHHHHHHHHHHhhCC
Q 009663 411 EVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY-G--ELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 411 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~~~~~~ 486 (529)
..+.++ ...+....-..+...-....-.+.|...+.+-+...| +...+..++... . .-|.+.+-+..++.|...-
T Consensus 270 ~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 270 NFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 999887 4456665555566655556667888888888888889 444444454443 2 3367889999999998887
Q ss_pred CccCCcccE
Q 009663 487 AYKTPGCSW 495 (529)
Q Consensus 487 ~~~~~~~~~ 495 (529)
++..|.+..
T Consensus 349 l~~~~~YRC 357 (389)
T COG2956 349 LRRKPRYRC 357 (389)
T ss_pred HhhcCCcee
Confidence 777776544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-10 Score=101.70 Aligned_cols=276 Identities=13% Similarity=0.098 Sum_probs=137.9
Q ss_pred cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 194 VGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
.|++..|+++..+-.+. ....|..-..+--+.|+.+.+-.++.+..+. .-.++.....+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchhHH
Confidence 45555555555443221 2223333334444555555555555555421 11333333444444455555555555
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHHHcCChhHHHHHH
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL-----------TSWNSMINSFALHGQSENSICVF 339 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~ 339 (529)
.-+..+.+.++. ++.+......+|.+.|++.....++..+.+.+. .+|..++.-....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555555555442 344455555566666666666666555554321 14455554444444444444455
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-K- 417 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 417 (529)
+... ...+-+...-.+++.-+...|+.++|.++.++..++ +..|+ .. ..-.+.+-++.+.-.+..+.. .
T Consensus 253 ~~~p----r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 253 KNQP----RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred Hhcc----HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh
Confidence 4443 222233334444555555666666666666666544 33333 11 111223344443333333332 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 418 IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 418 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+-++..+.+|...|.+.+.+.+|...|+.+.+..| +...+..++.++.+.|+..+|.+..++..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 111235555666666666666666666666666666 55666666666666666666666665554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.5e-10 Score=98.84 Aligned_cols=249 Identities=13% Similarity=0.051 Sum_probs=169.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 189 SGYTRVGDIKNAASLFDSMPDR----DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
.+....||.+.+-.++.+..++ +...+-+........|++..|..-+.++... -+-+.........+|.+.|
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM----TPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh----CcCChHHHHHHHHHHHHhc
Confidence 3444445555555555544332 2223333444455555555555555555421 1223344445555555555
Q ss_pred CchHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhH
Q 009663 265 MLQLGKVIHGYVYRNGLDLDS-------FISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSEN 334 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 334 (529)
++.....++..+.+.|.-.+. .+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~ 281 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDE 281 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHH
Confidence 555555555555555543332 245555555555555555556666665 3466677788888999999999
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 335 SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
|.++..+..+ .+..|+ ....-.+.+.++.+.-++..+...+.++.. +..+.+|...|.+.+.|.+|.+.|+
T Consensus 282 A~~~i~~~Lk---~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 282 AQEIIEDALK---RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHHHHHHH---hccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999887 777776 223335677888888888888887765444 4788999999999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 415 GM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 415 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.. +..|+..+|+-+..++.+.|+..+|.++.++.+.
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 87 8899999999999999999999999999999886
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-10 Score=108.43 Aligned_cols=424 Identities=11% Similarity=0.051 Sum_probs=235.6
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC----CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009663 31 QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT----TPNTYLYTAMITAYASQPAHASSAFSLYRDMVR 106 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 106 (529)
.++..+...|+.|+..+|..+|..||..| +.+.|- +|.-|. +-+...++.++.+..+. ++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-nd~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-NDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhccccc-ccccCCC--------
Confidence 46777888999999999999999999999 999998 887775 23445677777776666 6655443
Q ss_pred CCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHH-------hCCC-CchhH-------------HHHHHHHHHhcCCC
Q 009663 107 RGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVK-------SGFE-QYPVV-------------ETALVNSYSRSGND 165 (529)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~g~~-~~~~~-------------~~~l~~~~~~~g~~ 165 (529)
.|.+.||..+..+|...||+.....+-+++.. .|+. |.... -..++....-.| -
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg-l 154 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG-L 154 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH-H
Confidence 46667777788877777776542222221211 1211 00000 111222233334 4
Q ss_pred HHHHHHHHhhCCC--CChhhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHhhhc
Q 009663 166 IGIARKLFDEMSD--RNVVSWTAMISGYTR-VGDIKNAASLFDSMPD-RDVPAWNSVIAGCTQNGLFSDAISFFRRMGME 241 (529)
Q Consensus 166 ~~~A~~~~~~~~~--~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (529)
++.+.+++..++. .+. +...+++-+.. ...+++-..+.....+ +++.+|..++.+-...|+.+.|..++.+|...
T Consensus 155 waqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5555555544442 111 11111222221 2233344444444433 56666666666666666666676666666655
Q ss_pred ccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC---------------------
Q 009663 242 VSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS--------------------- 300 (529)
Q Consensus 242 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------- 300 (529)
|++-+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+..+..+|.
T Consensus 234 ---gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 234 ---GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSA 307 (1088)
T ss_pred ---CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHH
Confidence 666666555555433 55666666666666666666666666554444333222
Q ss_pred -------------------------------------------------HHHHHHHHhhcCC-------CChhHHHHHHH
Q 009663 301 -------------------------------------------------LKEARRAFDRNSK-------KRLTSWNSMIN 324 (529)
Q Consensus 301 -------------------------------------------------~~~A~~~~~~~~~-------~~~~~~~~li~ 324 (529)
-++.+++-..+.. .++..|..++.
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 1111111111111 11112222222
Q ss_pred HHHHcC----------------------ChhHHHHHHHHHhhcccCCCCCCHH---------------------------
Q 009663 325 SFALHG----------------------QSENSICVFEEMMRCQDHNIRPDGV--------------------------- 355 (529)
Q Consensus 325 ~~~~~~----------------------~~~~a~~~~~~m~~~~~~~~~p~~~--------------------------- 355 (529)
-|.+.- +..+..++... ..||..
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~--------lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN--------LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH--------hCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 221110 00011111100 112211
Q ss_pred -HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHH
Q 009663 356 -TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMK-----IEPDEVVWGSLL 429 (529)
Q Consensus 356 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~ 429 (529)
.-+.++..|+..-+..++...-+..... -+ +..|..||+.++.....+.|..+.++.. +..|..-+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 0112222333333333333222222211 11 2567889999999999999999999883 233555677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEI---DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYK 489 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 489 (529)
+.+.+.+....+..++.++.+. .|........+.......|+.+...++.+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8889999999999999998873 24345566666677788899999999999999888865
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-11 Score=105.13 Aligned_cols=197 Identities=15% Similarity=0.095 Sum_probs=153.9
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+ .. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT---LN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hC-CCCHHHHHHHH
Confidence 44566677777888888888888876543 2345777788888888999999999888865 22 23455677777
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 439 (529)
..+...|++++|...++++............+..+...+...|++++|...+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8888889999999999988753221224556777888899999999999999887 4344 4667888888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999988888888888889999999999999998877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-09 Score=98.45 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=131.2
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
.+.-.|+.-.|.+-|+..+. ....++. .|.-+...|...++.++.+..|++.. .+.| ++.+|..-.+.+.-.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~---l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIK---LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhcCCchhhhhhHHHHHh---cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHH
Confidence 34556899999999999976 3333322 27777778999999999999999987 5566 688998888999999
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
+++++|..=|++. .+.| +...|..+..+..+.++++++...|++.++..|+.+.+|+..+.++..++++++|.+.|+.
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 9999999999998 6677 4667777777888899999999999999999999999999999999999999999999998
Q ss_pred HhhCCC
Q 009663 482 LKDRNA 487 (529)
Q Consensus 482 ~~~~~~ 487 (529)
.++...
T Consensus 488 ai~LE~ 493 (606)
T KOG0547|consen 488 AIELEP 493 (606)
T ss_pred HHhhcc
Confidence 876543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-08 Score=91.27 Aligned_cols=272 Identities=11% Similarity=0.014 Sum_probs=198.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH---HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHH
Q 009663 179 RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWN---SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVC 255 (529)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ 255 (529)
.|+.....+..++...|+.++|+..|++..--|+.+.. .-.-.+.+.|++++...+...+... .+-+...|..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~----~~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK----VKYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh----hhcchhhhhh
Confidence 46778888889999999999999999886654443322 2233456778888887777776522 1233333433
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCCh
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS--K-KRLTSWNSMINSFALHGQS 332 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~ 332 (529)
-+..+...++++.|+.+-++.++.+.. +...+-.-..++...|+.++|.-.|+... . .+..+|.-++.+|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 344455677888888888888776542 45556556677888899999988887643 3 4677999999999999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHH-HHH-hCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLL-NAC-THGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 409 (529)
.+|.-.-+... .-+.-+..+...+. ..| ....--++|.+++++.. .+.|+ ......+...+...|..+++
T Consensus 385 kEA~~~An~~~----~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 385 KEANALANWTI----RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHHHHHHHH----HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchH
Confidence 99988777654 23344555555442 222 23334578888888776 55775 55667788889999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 410 LEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 410 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..++++. ...||....+.|.+.+...+.+.+|...|..+++++|++..+...+
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999987 7788999999999999999999999999999999999876665554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-08 Score=93.40 Aligned_cols=411 Identities=12% Similarity=0.049 Sum_probs=266.9
Q ss_pred hcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHH
Q 009663 57 LKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGT 133 (529)
Q Consensus 57 ~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (529)
..| +-++|........ ..+.+.|+.+.-.+... .++++|+..|......+ +.|...+.-+.-.-++.|+++..
T Consensus 53 ~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 53 CLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD-KKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhh-hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhH
Confidence 344 8888888877665 35678899887777767 99999999999999987 67777777776666788899988
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-----CChhhHHHH------HHHHHhcCCHHHHHH
Q 009663 134 KMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-----RNVVSWTAM------ISGYTRVGDIKNAAS 202 (529)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-----~~~~~~~~l------l~~~~~~g~~~~A~~ 202 (529)
.....++.+.. +.....|..+..++.-.| +...|..++++..+ |+...|... .....+.|..+.|.+
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLG-EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88888887753 234567888888888889 99999999887754 444444332 234567888899988
Q ss_pred HHhhCCCC--C-hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhh-ccC-CchHHHHHHHHHH
Q 009663 203 LFDSMPDR--D-VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIG-HTG-MLQLGKVIHGYVY 277 (529)
Q Consensus 203 ~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~ 277 (529)
.+...... | ...-..-...+.+.+++++|..++..+.. ..||...|...+..+. +.. .......+|....
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~-----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE-----RNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh-----hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 88776543 2 22233455678899999999999999984 4788877776655443 233 3333335665554
Q ss_pred HhCCCCCccHHHHH-HHHHHhCCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChhHHHHHHHHHhhc-ccCC-----
Q 009663 278 RNGLDLDSFISNAL-IDMYGKCGSLKEARRAFDRNSKKRL-TSWNSMINSFALHGQSENSICVFEEMMRC-QDHN----- 349 (529)
Q Consensus 278 ~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~----- 349 (529)
+.-. ....-.-+ +.......-.+....++..+.+.++ ..+..+...|-.-...+-..++...+... ...|
T Consensus 282 ~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 282 EKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred hcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 4321 11111111 1111111122233334444444433 34555554443333222222222222110 0010
Q ss_pred -----CCCCHH--HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-C
Q 009663 350 -----IRPDGV--TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KI-E 419 (529)
Q Consensus 350 -----~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 419 (529)
-+|... |+..++..+-..|+++.|..+++... +..|+ +..|..-.+.+...|++++|..++++. ++ .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 144443 45567788889999999999999998 55776 667777888999999999999999988 32 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CchhH--HHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN-------NGGYG--IMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
||...-..-.....+..+.++|.++..+..+.+-+ -.-.| .--+.+|.++|++.+|++=+..+.
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 55555546677778899999999999888775532 11122 223667888888888876655553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-10 Score=109.66 Aligned_cols=334 Identities=13% Similarity=0.098 Sum_probs=166.1
Q ss_pred HHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC
Q 009663 100 LYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR 179 (529)
Q Consensus 100 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~ 179 (529)
++-.+...|+ .|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++......+ +.+.+. .|
T Consensus 12 fla~~e~~gi-~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-------ep 81 (1088)
T KOG4318|consen 12 FLALHEISGI-LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-------EP 81 (1088)
T ss_pred HHHHHHHhcC-CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-------CC
Confidence 4444555555 555555555555555555555555 5555554444444555555555555555 444333 34
Q ss_pred ChhhHHHHHHHHHhcCCHHH-----------------------HHHHHhhCCC-C-ChhhHHHHHHHHHhCCChhHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKN-----------------------AASLFDSMPD-R-DVPAWNSVIAGCTQNGLFSDAISF 234 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~-----------------------A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~ 234 (529)
.+.+|+.+..+|...||+.. -..++-.+.- | ....-...+.-..-.|.++.++++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555433 2222222110 0 111112234444556667777777
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 009663 235 FRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK 314 (529)
Q Consensus 235 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 314 (529)
+..+... ....|... .++-+.. +....+++........-.|++.+|...+++-...|+.+.|..++.+|.+.
T Consensus 162 l~~~Pvs--a~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 162 LAKVPVS--AWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HhhCCcc--cccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 7666422 11112211 2332222 22333444443332222467777777777777788888888888777766
Q ss_pred Chh-----HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 315 RLT-----SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 315 ~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
+.. .|-.++. .++...++.+++-|.+ .|+.|+..|+...+..+...|....+.. | .+.
T Consensus 234 gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe---~gv~p~seT~adyvip~l~N~~t~~~~e---------~-sq~ 296 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG----INAAQVFEFVLRGMQE---KGVQPGSETQADYVIPQLSNGQTKYGEE---------G-SQL 296 (1088)
T ss_pred CCCcccccchhhhhc----CccchHHHHHHHHHHH---hcCCCCcchhHHHHHhhhcchhhhhccc---------c-cch
Confidence 433 2333322 6677777777777777 7888888877777666666443211111 1 122
Q ss_pred h-----hHHHHHHHHHHhcCChHHH-----HHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC
Q 009663 390 I-----EHYGCLVDLLGRAGRFEEA-----LEVVKGM---KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE----ID 452 (529)
Q Consensus 390 ~-----~~~~~l~~~~~~~g~~~~A-----~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 452 (529)
. ..+..+..+.....+.+.- ...+.+- ++.....+|... .-...+|..++.+++...+.. +.
T Consensus 297 ~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 297 AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccC
Confidence 2 2222222221111111111 1111111 333333344332 233447887888887777754 44
Q ss_pred CCCchhHHHHHHHHHhc
Q 009663 453 PNNGGYGIMLANIYGEL 469 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~ 469 (529)
|++...+..+..-|.+.
T Consensus 376 ~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRR 392 (1088)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 55666666666666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-10 Score=108.04 Aligned_cols=232 Identities=17% Similarity=0.185 Sum_probs=157.2
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHh-----CC-CCCcc-HHHHHHHHHHhCCCHHHHHHHHhhcCC--------CC-
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRN-----GL-DLDSF-ISNALIDMYGKCGSLKEARRAFDRNSK--------KR- 315 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~- 315 (529)
++..+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++.. .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444455555555555555555554433 11 11111 223355667777777777777765431 11
Q ss_pred --hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC--C-CCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcC--CC
Q 009663 316 --LTSWNSMINSFALHGQSENSICVFEEMMRCQDH--N-IRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYR--IE 387 (529)
Q Consensus 316 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 387 (529)
..+++.|..+|.+.|++++|..++++..++.+. + ..|... -++.+...|+..+++++|..+++...+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 126777777778888887777777766553222 2 223332 355667778889999999999988765432 12
Q ss_pred C----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 009663 388 P----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE--- 450 (529)
Q Consensus 388 p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 450 (529)
+ -..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2468899999999999999999999877 1122 245678888899999999999999988876
Q ss_pred -cCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 451 -IDPN---NGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 451 -~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+|+ ...+|..|+.+|...|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 45678889999999999999999998886
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-09 Score=90.70 Aligned_cols=178 Identities=8% Similarity=-0.011 Sum_probs=102.3
Q ss_pred HHHHhhcCCChhHHHHHhhcCCCC---ChhHHHHHHHH-HhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccC
Q 009663 52 VRFCTLKLSNLTYARFIFDHLTTP---NTYLYTAMITA-YASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDV 127 (529)
Q Consensus 52 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 127 (529)
+.-+.... ++..|..+++.-..- ....-+.-|.- +.+. |++++|+..|..+.... .++...+..+.-+..-.
T Consensus 29 Ledfls~r-DytGAislLefk~~~~~EEE~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNR-DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL-GDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcc-cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh-ccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHH
Confidence 44455555 888888888765421 11233333333 3344 88888888888887765 56666666666666666
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 009663 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSM 207 (529)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 207 (529)
|.+.+|..+-... +.++..-..++....+.| +-++-..+-+.+.+.. +---++....--.-.+.+|++++.++
T Consensus 105 g~Y~eA~~~~~ka-----~k~pL~~RLlfhlahkln-dEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 105 GQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLN-DEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhC-cHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777665433 222233333445555556 6555555444443321 22223333333344678888888887
Q ss_pred CCCCh--hhHHH-HHHHHHhCCChhHHHHHHHHhhh
Q 009663 208 PDRDV--PAWNS-VIAGCTQNGLFSDAISFFRRMGM 240 (529)
Q Consensus 208 ~~~~~--~~~~~-li~~~~~~g~~~~A~~~~~~m~~ 240 (529)
...+. ...|. +.-+|.+..-++-+.+++.--.+
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 65433 33333 34567777777777777776653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=100.25 Aligned_cols=231 Identities=11% Similarity=0.002 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHH
Q 009663 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--K-RLTSWNSMINS 325 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 325 (529)
|...-+.+..+|.+.|.+.+|...++..++.. |-+.||..|..+|.+..+...|+.+|.+..+ | |+....-+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 44445677888899999999999998887764 4566788888999999999999999987654 3 34444556788
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR 405 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (529)
+...++.++|.++|+...+ --+.+.....++...|.-.++++-|..+|+++.+- |+ .++..|..+.-+|.-.++
T Consensus 300 ~eam~~~~~a~~lYk~vlk----~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK----LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh----cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcc
Confidence 8888999999999999864 12234455666677788889999999999999865 64 467889999999999999
Q ss_pred hHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 406 FEEALEVVKGM---KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 406 ~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
+|-++.-|++. .-.|+ ..+|..+.......|++..|.+.|+-++..+|++...++.|+..-.+.|+.++|..++.
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 99999999887 22343 67899998888899999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 009663 481 MLKDRNA 487 (529)
Q Consensus 481 ~~~~~~~ 487 (529)
...+...
T Consensus 454 ~A~s~~P 460 (478)
T KOG1129|consen 454 AAKSVMP 460 (478)
T ss_pred HhhhhCc
Confidence 8877654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-08 Score=95.98 Aligned_cols=424 Identities=13% Similarity=0.056 Sum_probs=267.9
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC---CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCC-Cc
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT---PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQP-NQ 114 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~ 114 (529)
..+.-|+.+|..|.-+..+.| +++.+-+.|++..+ .....|+.+-..+... |....|+.+++.-....- .| |.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-g~~s~Av~ll~~~~~~~~-~ps~~ 393 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-GSDSKAVNLLRESLKKSE-QPSDI 393 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-ccchHHHHHHHhhccccc-CCCcc
Confidence 345678899999999999999 99999999998763 3345688787777777 888999999988766542 34 34
Q ss_pred chHHHHHHhCc-cCCCchHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcCC----------CHHHHHHHHhhCCC-
Q 009663 115 FIYPHVLKSCP-DVLESRGTKMVHTQIVKS--GF--EQYPVVETALVNSYSRSGN----------DIGIARKLFDEMSD- 178 (529)
Q Consensus 115 ~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~g~----------~~~~A~~~~~~~~~- 178 (529)
..+-..-+.|. +.+..+++..+..+++.. +. ......|..+.-+|...-+ ...++.+.+++..+
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 44444444454 557788888887777762 11 1223344444444433210 23456666666654
Q ss_pred --CChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHH
Q 009663 179 --RNVVSWTAMISGYTRVGDIKNAASLFDSMP----DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252 (529)
Q Consensus 179 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~ 252 (529)
.|+.+...+.--|+..++++.|.+..++.. ..++..|..+.-.+...+++.+|+.+.+....+ ...|...
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E----~~~N~~l 549 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE----FGDNHVL 549 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----hhhhhhh
Confidence 233333333344666778888887776643 346778888888888888888888888877643 1111111
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---C--CC-hhHHHHHHHHH
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---K--KR-LTSWNSMINSF 326 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~--~~-~~~~~~li~~~ 326 (529)
...-+..-...++.+++......+...--. .. .....++-....+....+. . .+ +.++..+....
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~--~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEA--EY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHh--hh-------hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 122222223356666665555544432100 00 0001111222223332221 0 11 12333332222
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCC--C------HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRP--D------GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLV 397 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 397 (529)
...+....-... +.. ..+.| + ...|......+.+.+..++|...+.+.. ++.| ....|....
T Consensus 621 a~~~~~~~se~~---Lp~---s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G 691 (799)
T KOG4162|consen 621 ASQLKSAGSELK---LPS---STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRG 691 (799)
T ss_pred Hhhhhhcccccc---cCc---ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhh
Confidence 211111000000 111 22222 2 1234455667888899999998888886 4445 577788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEF--AVKKLIEIDPNNGGYGIMLANIYGELGKWD 473 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 473 (529)
..+...|.+++|.+.|... .+.|+ +.+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++..+.+.|+.+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 8899999999999999887 67775 6788899999999999888888 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 009663 474 EVRKVRKMLKDRNA 487 (529)
Q Consensus 474 ~a~~~~~~~~~~~~ 487 (529)
.|.+.|....+-..
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998876654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-09 Score=97.67 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=187.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPDRDV---PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
++.....-..-+...+++.+..++++.+.+.|+ ..+-.-|.++...|+..+-.-+=.++.+. .+....+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~----yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL----YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh----CCCCCcchhhH
Confidence 444444455555666666776666666654332 33444455666667666666555555532 33345566666
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChh
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KR-LTSWNSMINSFALHGQSE 333 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~ 333 (529)
.--|...|+.++|+++|.+....+.. -...|-.+.+.|+-.|.-+.|...|....+ ++ -..+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 66666667777777777766654432 234677777888888888888877754332 11 112333445577788889
Q ss_pred HHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-CC---CC-ChhHHHHHHHHHHhcCChH
Q 009663 334 NSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-RI---EP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
.|.+.|.+. .++-| |+...+-+.-.....+.+.+|..+|+.....- .+ .+ -..+++.|..+|.+.+.++
T Consensus 398 LAe~Ff~~A-----~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 398 LAEKFFKQA-----LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHHHHHH-----HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999999888 44555 44555555555556788899999988776210 11 11 2346788899999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 408 EALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 408 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
+|+..++.. .. +.+..++.++.-.+...|+++.|++.|.+++.+.|++..+-..|..+...
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999987 33 44788888999999999999999999999999999887777777665543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-07 Score=87.78 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=108.0
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHh---CCCcHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHhc
Q 009663 330 GQSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACT---HGGLVEQGRAYFKLMTKTYRIEPQIE--HYGCLVDLLGRA 403 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~ 403 (529)
.-++++.++|++-.. .-..|+. ..|+..+.-+. ....++.|..+|++..+ |.+|... .|......=.+.
T Consensus 525 ~yfeesFk~YErgI~---LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 525 KYFEESFKAYERGIS---LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHHHHHHHHHHcCCc---cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHh
Confidence 334555555554432 2223443 23444433332 23568999999999986 6666422 233333333456
Q ss_pred CChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHhcCCHHHHHH
Q 009663 404 GRFEEALEVVKGM--KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG--YGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 404 g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~ 477 (529)
|-...|+.++++. ++++. ...|+..|.--...--+.....+|+++++.-|++.. .....+..-.+.|..+.|..
T Consensus 600 GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 600 GLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 8888999999998 44443 457888777655555566778899999988775332 22334455568899999999
Q ss_pred HHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHH
Q 009663 478 VRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDAL 522 (529)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (529)
++.--.+-.-.....-.| + +|-.-..+||+-+.+-++|
T Consensus 680 Iya~~sq~~dPr~~~~fW---~----twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 680 IYAHGSQICDPRVTTEFW---D----TWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHhhhhcCCCcCChHHH---H----HHHHHHHhcCCHHHHHHHH
Confidence 987665544333333344 2 4455556788844444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-09 Score=107.56 Aligned_cols=258 Identities=12% Similarity=0.031 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHHh-----CCChhHHHHHHHHhhhcccCCCCCCHH-HHHHHHHHhh---------ccCCchHHHHHHHH
Q 009663 211 DVPAWNSVIAGCTQ-----NGLFSDAISFFRRMGMEVSDNIRPNQV-TLVCALSAIG---------HTGMLQLGKVIHGY 275 (529)
Q Consensus 211 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~ 275 (529)
+...|...+.+-.. .+.+++|+.+|++.. ...|+.. .+..+..++. ..+++++|...+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-----~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-----NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555555554322 234679999999988 4567544 4444443332 23457899999999
Q ss_pred HHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC
Q 009663 276 VYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p 352 (529)
+.+.++. +..++..+..++...|++++|...|++..+. +...+..+...+...|++++|+..++++.+ ..|
T Consensus 330 Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-----l~P 403 (553)
T PRK12370 330 ATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK-----LDP 403 (553)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCC
Confidence 9988754 6677888888999999999999999986543 455788889999999999999999999976 344
Q ss_pred CHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHH
Q 009663 353 DGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEV-VWGSL 428 (529)
Q Consensus 353 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l 428 (529)
+.. .+..++..+...|++++|...++++.+. ..| ++..+..+..++...|+.++|...++++ ...|+.. ..+.+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 432 2333444466679999999999998754 135 4556778888999999999999999988 4455544 34455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIE---IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...+...| +.|...++++.+ ..|.++.. +...|.-.|+-+.+... +++.+.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 55566666 477777777766 33434333 55567777888877777 88877754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-09 Score=94.54 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=107.3
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALH 329 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 329 (529)
+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.+++..+ .+...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 33334444444444444444444443321 1233444445555555555555555544332 2233455555566666
Q ss_pred CChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|...+++... ....| ....+..+..++...|++++|...+++..+. .| +...+..+...+...|+++
T Consensus 113 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 113 GKYEQAMQQFEQAIE---DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred ccHHHHHHHHHHHHh---ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHH
Confidence 666666666666654 22112 2334555566666777777777777776643 33 3556666777777777777
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 408 EALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 408 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+|...+++. .. +.+...+..+...+...|+.++|..+.+.+....
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777777765 22 2345555566666677777777777777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-09 Score=109.49 Aligned_cols=212 Identities=9% Similarity=-0.014 Sum_probs=164.4
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH---------hCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCC
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG---------KCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQ 331 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 331 (529)
++.++|..+++++.+..+. +...+..+..+|. ..+++++|...+++..+. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567899999999887653 3455666665544 234588999999886643 55688888889999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 409 (529)
+++|+..|+++.+ ..|+ ...+..+...+...|++++|...++++.+ +.|+ ...+..++..+...|++++|
T Consensus 354 ~~~A~~~~~~Al~-----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 354 YIVGSLLFKQANL-----LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHH
Confidence 9999999999975 3454 55677788889999999999999999984 4664 33334445557778999999
Q ss_pred HHHHHhC-C-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 410 LEVVKGM-K-IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 410 ~~~~~~~-~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
...+++. . ..| ++..+..+..++...|++++|...++++....|.+......++..|...| ++|...++.+.+..
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 9999887 2 245 45556777888889999999999999998888888888888888888888 58888888876543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-09 Score=102.12 Aligned_cols=237 Identities=12% Similarity=0.094 Sum_probs=174.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcc--cCC-CCCCHHHH-HHHHHHhhccCCchHHHHHHHHHHHh-----CCC-C
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEV--SDN-IRPNQVTL-VCALSAIGHTGMLQLGKVIHGYVYRN-----GLD-L 283 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 283 (529)
+...+...|...|+++.|+.+++...... ..| ..|...+. +.+...|...+++.+|..+|+.+... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 45558888999999999999888765321 011 23444433 33666788899999999999988753 221 1
Q ss_pred -CccHHHHHHHHHHhCCCHHHHHHHHhhcCC----------CChh-HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 284 -DSFISNALIDMYGKCGSLKEARRAFDRNSK----------KRLT-SWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 284 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
-..+++.|..+|.+.|++++|...+++..+ +.+. .++.++..++..+++++|..++++..+....-..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 233567778889999999998888765321 1222 5677788899999999999999987664333333
Q ss_pred CCH----HHHHHHHHHHhCCCcHHHHHHHHHHhHHhc----C-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-----
Q 009663 352 PDG----VTFISLLNACTHGGLVEQGRAYFKLMTKTY----R-IEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM----- 416 (529)
Q Consensus 352 p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 416 (529)
++. .+++.+...|...|++++|..+++++.+.. + ..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 433 568899999999999999999999987642 1 122 2557788999999999999999988876
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 417 ---KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 417 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23344 46788999999999999999999998875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-07 Score=83.64 Aligned_cols=437 Identities=10% Similarity=0.053 Sum_probs=250.5
Q ss_pred HHHHHHHHHccCcchHH---HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHH--HHHH-
Q 009663 14 QQVLAILERCNHINHLK---QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAM--ITAY- 87 (529)
Q Consensus 14 ~~~~~~l~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--l~~~- 87 (529)
+.+..-+++.++-.+.+ +.-..+...+ +-|...+..=+-+....+ .+++|+++.+.-.. ..+++.. =.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~-ky~~ALk~ikk~~~--~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLD-KYEDALKLIKKNGA--LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhh-HHHHHHHHHHhcch--hhhcchhhHHHHHH
Confidence 45555666665555544 4444444444 334444444555556666 89999987766431 1122222 2333
Q ss_pred -hcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCC
Q 009663 88 -ASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQ-YPVVETALVNSYSRSGND 165 (529)
Q Consensus 88 -~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~ 165 (529)
.+. +..++|+..++ |.-+.|..+...-...|.+.|++++|..+|+.+.+.+.+. +...-..++.+-.
T Consensus 89 ~Yrl-nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----- 157 (652)
T KOG2376|consen 89 EYRL-NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----- 157 (652)
T ss_pred HHHc-ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----
Confidence 356 88999999988 3213344466666777899999999999999998876421 2222222222211
Q ss_pred HHHHHHHHhhCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCC--------CCC-----hh-----hHHHHHHHHHh
Q 009663 166 IGIARKLFDEMSDRNVVSWTAMI---SGYTRVGDIKNAASLFDSMP--------DRD-----VP-----AWNSVIAGCTQ 224 (529)
Q Consensus 166 ~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~ 224 (529)
.-.+ .+.+........+|..+- -.+...|++.+|+++++... +.| +. .---|...+..
T Consensus 158 ~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111 134444442233444443 45667899999999998872 111 11 12234456778
Q ss_pred CCChhHHHHHHHHhhhcccCCCCCCHHH----HHHHHHHhhccCCchH--HHHHHHHHHHhC-----------CCCCccH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRPNQVT----LVCALSAIGHTGMLQL--GKVIHGYVYRNG-----------LDLDSFI 287 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~--a~~~~~~~~~~~-----------~~~~~~~ 287 (529)
.|+.++|.+++....+. ..+|... -|.++. .....++-. .+..++...... -.-....
T Consensus 237 ~Gqt~ea~~iy~~~i~~----~~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKR----NPADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred hcchHHHHHHHHHHHHh----cCCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 89999999999998865 3444422 223332 222222211 111111111100 0001111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCC-hhHHHHHHHHH--HHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHH
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKR-LTSWNSMINSF--ALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLN 362 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~ 362 (529)
-+.++..| .+..+.+.++.......- ...+.+++... ++.....++.+++....+ -.|. .......+.
T Consensus 312 N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-----~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 312 NNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-----GHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-----cCCchhHHHHHHHHH
Confidence 12233333 345566666666655433 23444444333 223357788888887743 2333 344455666
Q ss_pred HHhCCCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHH
Q 009663 363 ACTHGGLVEQGRAYFK--------LMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--------KIEPD-EVVW 425 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~ 425 (529)
.....|+++.|.+++. .+.+. + ..+.+...+...|.+.++.+.|..++.+. ...+. ..++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~-~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEA-K--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhh-c--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 7788999999999999 44422 3 33455666777888887766666655544 11221 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.-....-.+.|+.++|...++++.+.+|++..+...++.+|.+. +.+.|..+-+.+
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 44445556789999999999999999999999999999888765 566666654433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=97.38 Aligned_cols=232 Identities=9% Similarity=0.006 Sum_probs=190.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 216 NSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 216 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
+.+.++|.+.|-+.+|.+.|+.... -.|-..||..+-.+|.+..++..|+.++.+-++.-+ .++.........+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-----q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-----QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-----cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHH
Confidence 4678899999999999999998874 477888999999999999999999999988877632 2444445567888
Q ss_pred HhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHH
Q 009663 296 GKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 372 (529)
...++.++|.++|+.+.+. ++....++...|...++++.|+.+|+++.+ .|+. +...|+.+.-+|.-.++++-
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq---mG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ---MGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH---hcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8889999999999987654 455666777888899999999999999998 6764 45678888888999999999
Q ss_pred HHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 373 GRAYFKLMTKTYRIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
+..-|++.... --.|+ ..+|-.|.......|++.-|.+.|+-. ........++.|...-.+.|++++|..++..+
T Consensus 377 ~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99999998754 33343 568888888889999999999999877 32335788999988889999999999999999
Q ss_pred HhcCCCCchh
Q 009663 449 IEIDPNNGGY 458 (529)
Q Consensus 449 ~~~~p~~~~~ 458 (529)
....|+-...
T Consensus 456 ~s~~P~m~E~ 465 (478)
T KOG1129|consen 456 KSVMPDMAEV 465 (478)
T ss_pred hhhCcccccc
Confidence 9999864433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-08 Score=94.62 Aligned_cols=425 Identities=12% Similarity=0.048 Sum_probs=271.5
Q ss_pred cccccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC--C--C-ChhHHHH
Q 009663 8 LNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--T--P-NTYLYTA 82 (529)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~ 82 (529)
+.+...++|...+.+||....+.+.+++....- .-....+..+-..|+..| .-..|..+++.-. + | +...+-.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHH
Confidence 456667889999999999999988888776543 335567777777888888 8888999987764 2 3 3444444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHC--CC-CCCCcchHHHHHHhCccC-----------CCchHHHHHHHHHHHhCCC-C
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRR--GQ-PQPNQFIYPHVLKSCPDV-----------LESRGTKMVHTQIVKSGFE-Q 147 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~--~~-~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~-~ 147 (529)
.-..|.++.+..+++++.-.+.... +. .......|..+.-+|... ....++.+.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4455655557777777777766652 11 022334444444444321 1344567888888877643 3
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH---HHHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWN---SVIA 220 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~ 220 (529)
++..|. .--|+..+ +++.|.+..++... .+...|..+.-.+...+++.+|+.+.+...+.-..-|+ .-+.
T Consensus 479 ~~if~l--alq~A~~R-~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFYL--ALQYAEQR-QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHHH--HHHHHHHH-hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 333343 33455666 89999998888765 47789999999999999999999998876543222222 2223
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHH--HhCCCCCccHHHHHHHHHHhC
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVY--RNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 298 (529)
.-..-++.++++.....+..- .....+-..+ +. .| ...+....+. .....-...++..+.......
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~-we~~~~~q~~----~~----~g---~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL-WEAEYGVQQT----LD----EG---KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH-HHhhhhHhhh----hh----hh---hhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 334467777777776666531 0011111001 00 01 1111111110 001111222333333222211
Q ss_pred C---CHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCC
Q 009663 299 G---SLKEARRAFDRNSKKR------LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGG 368 (529)
Q Consensus 299 g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~ 368 (529)
+ ..+..+..+.....++ ...|......+.+.+..++|...+.+.. ++.| ....|......+...|
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-----~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-----KIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-----hcchhhHHHHHHhhHHHHHHH
Confidence 1 1111112222222222 1256677788899999999999888884 3334 5566776667788889
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALE--VVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
..++|.+.|.... -+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.++|.+
T Consensus 699 ~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999999887 56784 7889999999999998777776 88777 6666 68999999999999999999999
Q ss_pred HHHHHHhcCCCCch
Q 009663 444 AVKKLIEIDPNNGG 457 (529)
Q Consensus 444 ~~~~~~~~~p~~~~ 457 (529)
+|..+.++.+.+|.
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999998876664
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-08 Score=83.87 Aligned_cols=300 Identities=17% Similarity=0.123 Sum_probs=202.0
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCCCChhhHHHH---HHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI---SGYTRVGDIKNAASLFDSMPDRDVPAWNSV---IAG 221 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~ 221 (529)
++.-...+...+...| ++..|+.-|....+-|+..|.++. ..|...|+...|+.-|.+..+-.+..+..- ...
T Consensus 37 dvekhlElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 3344445566666777 777787777777776666666554 346666776666666666554322222222 235
Q ss_pred HHhCCChhHHHHHHHHhhhcccCCCCCCH----------------HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc
Q 009663 222 CTQNGLFSDAISFFRRMGMEVSDNIRPNQ----------------VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS 285 (529)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (529)
+.+.|.+++|..=|+.+.+. .|+. ......+..+...|+...|+.....+++..+ -+.
T Consensus 116 llK~Gele~A~~DF~~vl~~-----~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda 189 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQH-----EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDA 189 (504)
T ss_pred hhhcccHHHHHHHHHHHHhc-----CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chh
Confidence 67788888888888877744 3311 1122334456677888888888888887654 477
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHH----H
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRN---SKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF----I 358 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~----~ 358 (529)
..+..-..+|...|++..|+.=++.. ...+..++.-+-..+...|+.+.++...++.. .+.||.... .
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-----KldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL-----KLDPDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH-----ccCcchhhHHHHHH
Confidence 77888888999999999888766543 44566677777777888888888888888774 466665321 1
Q ss_pred HH---------HHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-H
Q 009663 359 SL---------LNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-E 422 (529)
Q Consensus 359 ~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~ 422 (529)
.+ +......++|.++....+...+. .|. ...+..+..++...|++.+|++...+. .+.|| .
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 11 11233456777777777776643 443 234556677778888888998888887 66675 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
.++.--..+|.-...++.|+.-|+++.+.++++..+-..+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 7777778888888889999999999999888776655544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-11 Score=76.94 Aligned_cols=50 Identities=22% Similarity=0.591 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc
Q 009663 75 PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD 126 (529)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 126 (529)
||+.+||++|.++++. |++++|.++|++|.+.|+ +||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~-~~~~~a~~l~~~M~~~g~-~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKA-GKFEEALKLFKEMKKRGI-KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHcC
Confidence 6788888888888888 888888888888888887 8888888888887764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.9e-11 Score=75.11 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=36.7
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC
Q 009663 314 KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 314 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
||+.+|+++|.+|++.|++++|.++|++|.+ .|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~---~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK---RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHcC
Confidence 4666777777777777777777777777776 7777777777777777654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-07 Score=85.46 Aligned_cols=375 Identities=12% Similarity=0.074 Sum_probs=246.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARK 171 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~ 171 (529)
|+.++|.+....-.+.+ ..+...|..+.-.+....++++|...+..+...+ +.+...+.-+.-.=++.| +++....
T Consensus 55 g~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR-d~~~~~~ 130 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMR-DYEGYLE 130 (700)
T ss_pred cchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH-hhhhHHH
Confidence 88899999888887765 5677788888888888889999999999888865 345666766666666777 8887777
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHH------HHHHHHhCCChhHHHHHHHH
Q 009663 172 LFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPD-----RDVPAWNS------VIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 172 ~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~ 237 (529)
...+..+ | ....|..+..++.-.|+...|..+++.... ++...|.. ......+.|.+++|++.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 7777665 2 345788888888888999988888877542 34433322 22455677888888888876
Q ss_pred hhhcccCCCCCCHHHH-HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHH-HHHHHHHHhCCCHHHHH-HHHhhcCCC
Q 009663 238 MGMEVSDNIRPNQVTL-VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFIS-NALIDMYGKCGSLKEAR-RAFDRNSKK 314 (529)
Q Consensus 238 m~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~-~~~~~~~~~ 314 (529)
-... ..|...+ .+-...+.+.+++++|..++..++..+ ||...| ..+..++.+-.+.-++. .+|....+.
T Consensus 211 ~e~~-----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 211 NEKQ-----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hhhH-----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 5422 2233322 344556788899999999999988875 344444 44445554333333333 555543321
Q ss_pred ---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-----C-
Q 009663 315 ---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-----R- 385 (529)
Q Consensus 315 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~- 385 (529)
....-..=+....-..-.+..-.++..+.+ .|+++- |..+...+-.....+ +++++...+ |
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~---Kg~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS---KGVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGT 353 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhh---cCCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhcccc
Confidence 100000001111112223444556666666 777663 333333332222111 222222110 1
Q ss_pred -----------CCCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 386 -----------IEPQIE--HYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE-VVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 386 -----------~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
-+|++. ++-.++..|-+.|+++.|+.+++.. +-.|+. ..|..-...+...|++++|..+++++.+
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 144444 3456788899999999999999988 656764 4555556778899999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++-.|..+-...+.-..++++.++|.++....-+.|.
T Consensus 434 lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 434 LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9866777777888888999999999999999987775
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-09 Score=86.97 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNAC 364 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~ 364 (529)
..|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|+.+.|.+-|++... +.| +....|....-+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-----l~p~~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS-----LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-----cCCCccchhhhhhHHH
Confidence 3344555555555555555555443332 2555555555555555555555555532 223 223344444444
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 442 (529)
|..|.+++|...|++............+|..+.-+..+.|+.+.|...|++. ...| .+.+...+.......|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 5555555555555555543222122445555555555555555555555554 2233 2334444455555555555555
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
..+++.....+-+.......+.+-...|+.+.+-++=.++
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555555544334444444444445555555555444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-09 Score=97.31 Aligned_cols=232 Identities=12% Similarity=-0.054 Sum_probs=134.0
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCC--HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPN--QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (529)
.....+..+.++..+.++... ....|+ ...|..+...+...|+.++|...|++..+..+. +...|+.+...+...
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~--~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILAS--RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQA 111 (296)
T ss_pred ccCCchHHHHHHHHHHHHHcc--ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 344455666777777777632 122232 234555666677778888888888777776543 566777777778888
Q ss_pred CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHH
Q 009663 299 GSLKEARRAFDRNSK--K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 299 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
|++++|...|++..+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|..
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~-----~~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ-----DDPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHccCCHHHHHH
Confidence 888888877776543 2 345677777777777888888888877754 33433222222222344567777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 376 YFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE--ALEVVKGM-KI----EP-DEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
.+++.... ..|+... ..+. ....|+..+ +.+.+.+. .. .| ....|..+...+...|++++|+..|++
T Consensus 187 ~l~~~~~~--~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYEK--LDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHhh--CCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77655432 2333222 1222 223444433 22222221 11 11 234677777777778888888888888
Q ss_pred HHhcCC-CCchhHHHHHHH
Q 009663 448 LIEIDP-NNGGYGIMLANI 465 (529)
Q Consensus 448 ~~~~~p-~~~~~~~~l~~~ 465 (529)
+.+.+| +.......++..
T Consensus 262 Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 262 ALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 877775 333344444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-08 Score=91.95 Aligned_cols=211 Identities=15% Similarity=0.114 Sum_probs=123.1
Q ss_pred CchHHHHHHHHHHHhCC-CC--CccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHH
Q 009663 265 MLQLGKVIHGYVYRNGL-DL--DSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICV 338 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 338 (529)
..+.++.-+.+++.... .| ....|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555554321 11 133466666677777777777777776543 2445777777777777777777777
Q ss_pred HHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 009663 339 FEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM- 416 (529)
Q Consensus 339 ~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 416 (529)
|++..+ +.|+ ...+..+..++...|++++|.+.++...+. .|+..........+...++.++|.+.|++.
T Consensus 121 ~~~Al~-----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 121 FDSVLE-----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777754 3343 455666666677777777777777777643 453322222222334556777777777554
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 417 -KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI-------EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 417 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...|+...+ .......|+..++ +.++.+. +..|..+.+|..++.++.+.|++++|+..|++..+.++
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 223332222 1222234444332 2333333 34455566777777777777777777777777776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-07 Score=79.60 Aligned_cols=282 Identities=11% Similarity=0.034 Sum_probs=207.0
Q ss_pred HhcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHhhccCC
Q 009663 192 TRVGDIKNAASLFDSMP-----DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAIGHTGM 265 (529)
Q Consensus 192 ~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~~~~~~ 265 (529)
+-.++...|...+-.+. ..|+.....+...+...|+.++|+..|++.+ -+.|+..+-. .....+...|+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCChhhhhhHHHHHHHHHhccC
Confidence 34455555555443332 3478889999999999999999999999987 4566554321 12223457788
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
.+....+...+....- .+...|-.-........+++.|+.+-++.... ++..|-.-...+...+++++|.-.|+..
T Consensus 282 ~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 8887777777665431 23333333444556678899999888876544 4455655567889999999999999998
Q ss_pred hhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCChHHHHHHHHhC-CC
Q 009663 343 MRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV-DLLG-RAGRFEEALEVVKGM-KI 418 (529)
Q Consensus 343 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~ 418 (529)
.. +.| +...|..|+.+|...|.+.+|...-+...+.. ..+..+...+. ..+. ...--++|.++++.. .+
T Consensus 361 q~-----Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 361 QM-----LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred Hh-----cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 53 554 67899999999999999999988887776532 33455544442 2222 222357899999887 77
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 419 EPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 419 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+|+ ....+.+...|...|..+.++.++++.+...| |...+..|+..+...+.+.+|.+.|......+.
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 887 55677788889999999999999999999999 789999999999999999999999988866544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.5e-07 Score=83.57 Aligned_cols=412 Identities=11% Similarity=0.019 Sum_probs=230.7
Q ss_pred HHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchH-HHHHHhCcc
Q 009663 51 LVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY-PHVLKSCPD 126 (529)
Q Consensus 51 ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~~l~~~~~~ 126 (529)
=++.+...+ ++++|.+....+. +.+...+..-+-++.+. +.+++|+.+.+.-... .....| -.-.-+..+
T Consensus 18 ~ln~~~~~~-e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNG-EYEEAVKTANKILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNGAL----LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccch-HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcchh----hhcchhhHHHHHHHHH
Confidence 345566666 8888888777765 34556677777777777 8888887544332110 111111 111222347
Q ss_pred CCCchHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHH-HhcCCHHHHHHHH
Q 009663 127 VLESRGTKMVHTQIVKSGFEQ-YPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGY-TRVGDIKNAASLF 204 (529)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~A~~~~ 204 (529)
.+..++|...++ |..+ +..+...-...+.+.| ++++|..+|+.+.+.+...+...+.+- ...+-.-.+. +.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HH
Confidence 778888887776 2222 3335555566777888 888888888888665544444433321 1111111121 33
Q ss_pred hhCCCCChhhHH---HHHHHHHhCCChhHHHHHHHHhhhcccCCCCC----CHH-------HHHHHHHHhhccCCchHHH
Q 009663 205 DSMPDRDVPAWN---SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP----NQV-------TLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 205 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p----~~~-------~~~~ll~~~~~~~~~~~a~ 270 (529)
+..+.....+|. .....++..|++.+|+++++....-+...+.- +.. .-..+..++...|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 333333233333 34556777899999999998873221111111 111 1223344567889999999
Q ss_pred HHHHHHHHhCCCCCccH----HHHHHHHHHhCCCHH-HHHHHHhhcCCCCh---------------hHHHHHHHHHHHcC
Q 009663 271 VIHGYVYRNGLDLDSFI----SNALIDMYGKCGSLK-EARRAFDRNSKKRL---------------TSWNSMINSFALHG 330 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~---------------~~~~~li~~~~~~~ 330 (529)
.++...++..+. |... .|.|+.+-....-++ .++..++....... ..-+.++..| .+
T Consensus 245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tn 321 (652)
T KOG2376|consen 245 SIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TN 321 (652)
T ss_pred HHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 999888887653 3322 222222111111111 12222222211111 1111222222 23
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC--CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 009663 331 QSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH--GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 331 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 407 (529)
.-+.+.++.... .+..|.. .+.+++..+.+ ...+..+..++....+. .+.+ ..+....++.....|+++
T Consensus 322 k~~q~r~~~a~l-----p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 322 KMDQVRELSASL-----PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred hHHHHHHHHHhC-----CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHH
Confidence 344454444443 3444543 34444444322 22467778888777643 2223 556677788899999999
Q ss_pred HHHHHHH--------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHhcCC
Q 009663 408 EALEVVK--------GM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE-------IDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 408 ~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~ 471 (529)
.|.+++. .+ .+.-.+.+..++...+.+.++.+.|..++..++. -.+.-...+..++..-.+.|+
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9999998 43 3444566677777778888888878888877766 112223344455556678899
Q ss_pred HHHHHHHHHHHhhCC
Q 009663 472 WDEVRKVRKMLKDRN 486 (529)
Q Consensus 472 ~~~a~~~~~~~~~~~ 486 (529)
-++|..+++++.+.+
T Consensus 474 ~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 474 EEEASSLLEELVKFN 488 (652)
T ss_pred hHHHHHHHHHHHHhC
Confidence 999999999998754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-07 Score=79.60 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHh-CccCCCchHHHHHHHHHHHh
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS-CPDVLESRGTKMVHTQIVKS 143 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~ 143 (529)
-.+++|+++|.+.... .|+-...+.-+.. |.+..-++-+.+++.--++.
T Consensus 165 ~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 4566666666666654 2343344333333 34555555566666555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-07 Score=80.21 Aligned_cols=388 Identities=13% Similarity=0.029 Sum_probs=239.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHH-HHHHH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVET-ALVNS 158 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~ 158 (529)
+.+.+..+.+. .++..|++++..-.++. +.+......+..+|....++..|-..++++...- |...-|. --...
T Consensus 13 ftaviy~lI~d-~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRD-ARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHH-hhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 56677777788 88999999998887775 4577888888888889999999999999987753 3333222 23456
Q ss_pred HHhcCCCHHHHHHHHhhCCC-CChhhHHHHHHH--HHhcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHhCCChhHHHHH
Q 009663 159 YSRSGNDIGIARKLFDEMSD-RNVVSWTAMISG--YTRVGDIKNAASLFDSMP-DRDVPAWNSVIAGCTQNGLFSDAISF 234 (529)
Q Consensus 159 ~~~~g~~~~~A~~~~~~~~~-~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 234 (529)
+.+.+ .+..|+++...|.+ ++...-..-+.+ .-..+++..+..++++.+ +.+..+.+.......+.|+++.|++-
T Consensus 88 LY~A~-i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 88 LYKAC-IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHhc-ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 67788 89999999998887 333222222222 335789999999999998 46777777778888899999999999
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-------------Cc---------------c
Q 009663 235 FRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL-------------DS---------------F 286 (529)
Q Consensus 235 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~ 286 (529)
|+...+- +|..|- ..|+..+ +..+.++.+.|+++..++++.|+.. |. .
T Consensus 167 FqaAlqv--sGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 167 FQAALQV--SGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHhh--cCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9988742 355553 4555444 4567789999999999999877531 11 1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKK-----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
.+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.= ..+++.+..+-+.-+.. ... ....||..++
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~---~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ---QNP-FPPETFANLL 317 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh---cCC-CChHHHHHHH
Confidence 1222233455678888888888887754 555555443221 23444444444444433 211 2346788888
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCC
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIE-PQIEHYGCLVDLLG-RAGRFEEALEVVKGMKIEP--DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 437 (529)
-.||+..-++.|-.++.+-... ... .+...|+ |++++. ..-..++|++-++.+.-.- ......+-+. -.+..+
T Consensus 318 llyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ-e~r~~~ 394 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ-EARHNR 394 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 8888887777777777553211 111 1222333 233332 3345566655554441000 0000001111 112222
Q ss_pred H----HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 438 T----DFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 438 ~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
- ..+++-+++.+++. -.+...-++.|++..++.-+.++|..-.+-.-.
T Consensus 395 dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 395 DDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 1 22334444444432 124455677888999999999998776555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-09 Score=100.25 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=176.6
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
+.+.|++.+|.-.|+..++.++. +..+|..|.......++-..|+..+.+..+ .|......|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 46788899999999999988764 778899999999999998999988887654 35567888888999999999999
Q ss_pred HHHHHHhhccc-CC--CC--CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 009663 337 CVFEEMMRCQD-HN--IR--PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 337 ~~~~~m~~~~~-~~--~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
..++.-..... .. .. ++..+-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99988754100 00 00 00000000 12233334556667777766665666788999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 412 VVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 412 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.|+.+ .++| |...||.|...++...+.++|+..|.+++++.|.-..+...|+..|...|.++||...|-.....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99988 6677 67899999999999999999999999999999999999999999999999999999998777544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-07 Score=87.09 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=113.3
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh----------HHHHHH
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLT----------SWNSMI 323 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 323 (529)
..+.++..+..+++.+.+.+....+.. -+..-++....+|...|.+..+....+...+.+.. .+..+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556666677777777666655 34555566666777777766666555443332211 222233
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHh
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDLLGR 402 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 402 (529)
.+|.+.++++.++..|.+... ....|+..+ +....+++....+... -+.|.. .-...-...+.+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLt---e~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALT---EHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFK 370 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhh---hhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHh
Confidence 456666777777777777654 333333211 1222333333333222 222321 111112344555
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.|++..|...|.++ ...| |...|..-..+|.+.|.+..|+.-.+...+++|+....|..=+.++....+|++|.+.|+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555 3233 455555555556666666666666666666666555555555555555566666666555
Q ss_pred HHhhCC
Q 009663 481 MLKDRN 486 (529)
Q Consensus 481 ~~~~~~ 486 (529)
+..+..
T Consensus 451 eale~d 456 (539)
T KOG0548|consen 451 EALELD 456 (539)
T ss_pred HHHhcC
Confidence 554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-08 Score=93.39 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=153.4
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC-
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC- 298 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 298 (529)
.+...|++++|++.+..-. +..+|. ..+......+.+.|+.++|..++..+++.++. +..-|..+..+....
T Consensus 13 il~e~g~~~~AL~~L~~~~-----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE-----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh-----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 3455566666666665543 223333 33334445556666666666666666665532 333333333333211
Q ss_pred ----CCHHHHHHHHhhcCCCChh--HHHHHHHHHHHcCCh-hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 299 ----GSLKEARRAFDRNSKKRLT--SWNSMINSFALHGQS-ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 299 ----g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
...+....+|+++...-+. ....+.-.+..-..+ ..+..++..+.. .|+++ +|..+-..|....+..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~---KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR---KGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh---cCCch---HHHHHHHHHcChhHHH
Confidence 1344445555544322111 111111111111111 234445556665 66654 4555555565555555
Q ss_pred HHHHHHHHhHHhc-------------CCCCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 009663 372 QGRAYFKLMTKTY-------------RIEPQIE--HYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKI 434 (529)
Q Consensus 372 ~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 434 (529)
-...++....... .-.|+.. ++..+.+.|...|++++|++++++. ...|+ +..|..-...+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5555555544321 1123332 4466788899999999999999977 55675 6777778888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 435 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.|++.+|.+.++.+..+++.|..+-+-.+..+.++|+.++|..++...-+.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999998988999999999999999999999988877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-07 Score=91.77 Aligned_cols=285 Identities=14% Similarity=0.102 Sum_probs=152.8
Q ss_pred HHhcCCHHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhh------
Q 009663 191 YTRVGDIKNAASLFDSMPDR--D-VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIG------ 261 (529)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~------ 261 (529)
+...|++++|++.++.-... | ..........+.+.|+.++|...|..+... .|+...|...+..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHhhhccc
Confidence 34455555555555443321 2 223334445556666666666666666532 444444443333322
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHH-HHHHHHhhcCCCChh-HHHHHHHHHHHcCChhHHHHHH
Q 009663 262 HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLK-EARRAFDRNSKKRLT-SWNSMINSFALHGQSENSICVF 339 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~ 339 (529)
...+.+....+++.+...- |.......+.-.+.....+. .+..++..+...++. +|+.+-..|......+-...++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1113444455555554432 12222211111111111222 222333333344443 4444444444333333333444
Q ss_pred HHHhhc-cc----------CCCCCCH--HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 009663 340 EEMMRC-QD----------HNIRPDG--VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGR 405 (529)
Q Consensus 340 ~~m~~~-~~----------~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 405 (529)
...... .. ..-.|.. .++..+...|...|++++|..++++.+. ..|+ +..|..-.+.|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCC
Confidence 443220 00 1123433 2445566777788888888888888874 3675 7778888888888888
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC-------chhHHHHHHHHHhcCCHHH
Q 009663 406 FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNN-------GGYGIMLANIYGELGKWDE 474 (529)
Q Consensus 406 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~ 474 (529)
+++|.+.++.. ...+ |..+-+.....+.+.|++++|.+.+....+.+ |.. ..+..-.+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888888877 3444 45555556667788888888888888776644 221 2233445778888888888
Q ss_pred HHHHHHHHhhC
Q 009663 475 VRKVRKMLKDR 485 (529)
Q Consensus 475 a~~~~~~~~~~ 485 (529)
|+..|..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777666443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-08 Score=81.25 Aligned_cols=198 Identities=14% Similarity=0.057 Sum_probs=127.7
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALH 329 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 329 (529)
...+.-.|...|+...|..-++++++..+. +..++..+...|.+.|..+.|.+.|++.. ..+....|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 344445667777777777777777776542 45566667777777777777777776543 23444666666667777
Q ss_pred CChhHHHHHHHHHhhcccCCC-CCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNI-RPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|...|++... ... .--..||..+.-|..+.|+.+.|...|++..+. .| .+.....+.....+.|++-
T Consensus 117 g~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 117 GRPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred CChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccch
Confidence 777777777777665 221 112346666666667777777777777776632 44 3556666667777777777
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 408 EALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 408 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
.|..+++.. +..++..+....|..-.+.|+.+.+.+.=.++.+..|.+..
T Consensus 191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 191 PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 777777666 33466666666666666677777777766666667775544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=92.08 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCc
Q 009663 191 YTRVGDIKNAASLFDSMPDR----DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGML 266 (529)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 266 (529)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.. +-.|.......+...+...++-
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~----~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK----SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T----TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc----CCChhHHHHHHHHHHHhCccch
Confidence 334566666664433 1111 2233445556666666655433 22221 2244444444444433332333
Q ss_pred hHHHHHHHHHHHhCCC-CCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 009663 267 QLGKVIHGYVYRNGLD-LDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRC 345 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 345 (529)
+.+..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~- 159 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ- 159 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 3333333222222211 11122222233444556666666555543 2333444445555555555555555555532
Q ss_pred ccCCCCCCHHHHHHHHHHHh----CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 346 QDHNIRPDGVTFISLLNACT----HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 346 ~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
...| .+...+..++. -.+.+..|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...|
T Consensus 160 ----~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 160 ----IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp ----CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred ----cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 2222 22222222221 12245555555555543 22344445555555555555555555555443 2222
Q ss_pred -CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCC
Q 009663 421 -DEVVWGSLLNGCKIYGRT-DFAEFAVKKLIEIDPN 454 (529)
Q Consensus 421 -~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~ 454 (529)
++.++..++.+....|+. +.+.+.+.++....|+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 334444444444444444 3444455555555553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-07 Score=88.63 Aligned_cols=372 Identities=16% Similarity=0.160 Sum_probs=215.8
Q ss_pred ChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCC-cchHHHHHHhCccCCCchHHHHHHHH
Q 009663 61 NLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPN-QFIYPHVLKSCPDVLESRGTKMVHTQ 139 (529)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (529)
++.+|..+|-+-. ++. ..|..|... .+|++++.+-+. .| .|. ...-.+.++++...|+-++|-++-.
T Consensus 546 kfk~ae~ifleqn--~te---~aigmy~~l-hkwde~i~lae~---~~--~p~~eklk~sy~q~l~dt~qd~ka~elk~- 613 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN--ATE---EAIGMYQEL-HKWDEAIALAEA---KG--HPALEKLKRSYLQALMDTGQDEKAAELKE- 613 (1636)
T ss_pred hhhHHHHHHHhcc--cHH---HHHHHHHHH-HhHHHHHHHHHh---cC--ChHHHHHHHHHHHHHHhcCchhhhhhhcc-
Confidence 7888888875421 111 224444444 678887776442 23 232 2222344555556666665544321
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh----
Q 009663 140 IVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEM--SDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVP---- 213 (529)
Q Consensus 140 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---- 213 (529)
. +.. -.+.|..|.+.| .+..|.+....= ...|......+..++.+..-++.|-.+|+++..++-.
T Consensus 614 --s-----dgd-~laaiqlyika~-~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~f 684 (1636)
T KOG3616|consen 614 --S-----DGD-GLAAIQLYIKAG-KPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECF 684 (1636)
T ss_pred --c-----cCc-cHHHHHHHHHcC-CchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHH
Confidence 1 111 134567777777 666665543221 1245555555666666666666666666666543221
Q ss_pred ----------------------h-HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 214 ----------------------A-WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 214 ----------------------~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
+ -......+.+.|+++.|+..|-+... ..-.+.+......+.+|+
T Consensus 685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------------~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------------LIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------------HHHHHHHHhhhhhhhhhH
Confidence 0 01112223334444444444433321 122344556677888888
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
.+++.+.+... -..-|..+.+.|+..|+++.|+++|-+.. .++-.|..|.+.|+|+.|.++-.+. .|.
T Consensus 753 ~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~-----~~~ 820 (1636)
T KOG3616|consen 753 SILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC-----HGP 820 (1636)
T ss_pred hHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh-----cCc
Confidence 88887776643 34457778888888999999998886543 3455678888899999888887776 455
Q ss_pred CCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 009663 351 RPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLN 430 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 430 (529)
......|..-..-+-..|++.+|.++|-.+. .|+. -|.+|-+.|..++.+++.++..-..-..|-..+..
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 5555666666666777888888888775543 3442 46778888888888888877621233445556666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
-+-..|+...|...|-++.+. ..-.+.|...+.|++|.++-+.--..+..+...+.|
T Consensus 891 e~e~~g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred HHHhccChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 677778887777776655432 223344555566666665554333333333333334
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-07 Score=80.77 Aligned_cols=292 Identities=12% Similarity=0.098 Sum_probs=218.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHH---HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHh
Q 009663 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVI---AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAI 260 (529)
Q Consensus 185 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~ 260 (529)
.-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.=+..+. ..+||...-. .-...+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl-----elKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL-----ELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH-----hcCccHHHHHHHhchhh
Confidence 34667778899999999999999998888877765 46888999999999999988 5688865432 223457
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCc--cHH------------HHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHH
Q 009663 261 GHTGMLQLGKVIHGYVYRNGLDLDS--FIS------------NALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMI 323 (529)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 323 (529)
.+.|.++.|..-|+.+++..+.... .++ ...+..+...|+...|+.....+.+- |...|..-.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 8999999999999999987653211 112 12344556688999999988877653 556788888
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh----HHHHH---
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE----HYGCL--- 396 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l--- 396 (529)
.+|...|++..|+.-++...+ . ...+..++.-+-..+...|+.+.+....++.. .+.|+-. .|-.|
T Consensus 197 kc~i~~~e~k~AI~Dlk~ask---L-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASK---L-SQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---c-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHH
Confidence 999999999999998888754 2 22344555556666777888888887777766 5677632 22221
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 397 ------VDLLGRAGRFEEALEVVKGM-KIEPDE-----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 397 ------~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
+......++|.++++-.+.. ...|.. ..+..+-.++...|++.+|++...+++.++|++..++.--+.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 12234567788888777765 555652 234445556777899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 465 IYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 465 ~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+|.-...+|+|+.-|+...+.+..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999877654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-06 Score=79.71 Aligned_cols=426 Identities=12% Similarity=0.076 Sum_probs=256.5
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 009663 77 TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALV 156 (529)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 156 (529)
...|-..+..+..+ |+.......|+..+..=...-....|...+......+-++.+..++...++. ++..-+..+
T Consensus 102 pRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 34577777778888 9999999999888775322445667888888888888899999999988764 333467778
Q ss_pred HHHHhcCCCHHHHHHHHhhCCCC----------ChhhHHHHHHHHHhcCCH---HHHHHHHhhCCCC----ChhhHHHHH
Q 009663 157 NSYSRSGNDIGIARKLFDEMSDR----------NVVSWTAMISGYTRVGDI---KNAASLFDSMPDR----DVPAWNSVI 219 (529)
Q Consensus 157 ~~~~~~g~~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~----~~~~~~~li 219 (529)
..++..+ ++++|.+.+..+... +-..|..+-+...+.-+. -....+++.+... -...|.+|.
T Consensus 177 e~L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 177 EYLAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 8888999 999999999888752 334566665555544332 1233444444432 235789999
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhcc----------------C------CchHHHHHHHHHH
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHT----------------G------MLQLGKVIHGYVY 277 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~ 277 (529)
+.|.+.|++++|-++|++..+. ..+..-|..+..+|+.- + +++-...-|+.+.
T Consensus 256 dYYIr~g~~ekarDvyeeai~~-----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT-----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999987643 23333333333333211 1 1222233344333
Q ss_pred HhCCC-----------CCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-------CC--hhHHHHHHHHHHHcCChhHHHH
Q 009663 278 RNGLD-----------LDSFISNALIDMYGKCGSLKEARRAFDRNSK-------KR--LTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 278 ~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~a~~ 337 (529)
..++. .+...|..-+ -+..|+..+-...|.+..+ ++ ...|..+...|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 32210 1111222111 1223455555555554321 11 1268888889999999999999
Q ss_pred HHHHHhhcccCCCCC---CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc---------CCCC-------ChhHHHHHHH
Q 009663 338 VFEEMMRCQDHNIRP---DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY---------RIEP-------QIEHYGCLVD 398 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~p-------~~~~~~~l~~ 398 (529)
+|++..+ -..+- -..+|..-...-.+..+++.|.++.+.+..-. |-.| +...|+.+++
T Consensus 409 ifeka~~---V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 409 IFEKATK---VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHhhc---CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9998865 22221 12345555555566778888888888775210 0001 1234555666
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHh---cCC
Q 009663 399 LLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGGYGIMLANIYGE---LGK 471 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~---~g~ 471 (529)
.-...|-++....+++++ .++ .++.+.......+-.+.-++++.++|++.+.+. |.-..+|+....-+.+ .-+
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 666778888888888887 222 133333333444556677889999999988866 4344455554443332 236
Q ss_pred HHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHH
Q 009663 472 WDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESM 525 (529)
Q Consensus 472 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (529)
.+.|..+|++..+... |.-..+. .-.|....-+||-+.-+.+++++-
T Consensus 566 lEraRdLFEqaL~~Cp-p~~aKti------yLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 566 LERARDLFEQALDGCP-PEHAKTI------YLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8899999999988332 2221111 112222333556666666666653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-08 Score=88.53 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=133.1
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG 299 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 299 (529)
+-+.-.|++..++.-.+ .... .-..+......+.+++...|+.+.++. .+.+. ..|.......+...+...+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~---~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF---SPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS---TCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTST
T ss_pred HHHHHhhhHHHHHHHhh-ccCC---CchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCcc
Confidence 34445677777775555 2211 111223344455566666666554332 22222 2455555554544444334
Q ss_pred CHHHHHHHHhhcC-CC----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHH
Q 009663 300 SLKEARRAFDRNS-KK----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGR 374 (529)
Q Consensus 300 ~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 374 (529)
+-+.+..-+++.. .. +..........+...|++++|++++... .+.......+..+.+.++++.|.
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCCHHHHH
Confidence 5555555554433 22 1111222223445567777777665432 23455556667777777777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 375 AYFKLMTKTYRIEPQIEHYGCLVDLLG----RAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
+.++.|. .+..| .+...|..++. ..+.+.+|..+|+++ ...+++.+.+.+..++...|++++|.+++.++
T Consensus 152 k~l~~~~---~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 152 KELKNMQ---QIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHH---CCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHH---hcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7777776 23333 33333444332 233577777777777 44566777777777777777777777777777
Q ss_pred HhcCCCCchhHHHHHHHHHhcCCH-HHHHHHHHHHhhC
Q 009663 449 IEIDPNNGGYGIMLANIYGELGKW-DEVRKVRKMLKDR 485 (529)
Q Consensus 449 ~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 485 (529)
.+.+|+++.+...++.+....|+. +.+.+++.++...
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777777777777777777777776 5566677766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-05 Score=79.32 Aligned_cols=390 Identities=11% Similarity=0.110 Sum_probs=256.0
Q ss_pred HHHHHHHHhCCC--CchhHHHHHHHHHhhcCCChhHHHHHhhcCC-CCChh-----HHHHHHHHHhcCCCChHHHHHHHH
Q 009663 31 QLQSFLTTLGQS--QTNFYAFKLVRFCTLKLSNLTYARFIFDHLT-TPNTY-----LYTAMITAYASQPAHASSAFSLYR 102 (529)
Q Consensus 31 ~i~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~~~~ll~~~~~~~~~~~~a~~~~~ 102 (529)
++.++....+++ .||.-.+..+.++...+ -..+-.++++.+. .++++ .-|.|+-.-.+ -+.....+..+
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtad-Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik--ad~trVm~YI~ 1044 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTAD-LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK--ADRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh--cChHHHHHHHH
Confidence 445555555543 35566666777777776 6777777777765 33322 33444444333 35556666666
Q ss_pred HHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChh
Q 009663 103 DMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVV 182 (529)
Q Consensus 103 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~ 182 (529)
++-..+ .|+ +...+...+-+++|..+|+.. ..+....+.|+. .-+ ..+.|.++-++..+| .
T Consensus 1045 rLdnyD--a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~-~ldRA~efAe~~n~p--~ 1105 (1666)
T KOG0985|consen 1045 RLDNYD--APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIG-SLDRAYEFAERCNEP--A 1105 (1666)
T ss_pred HhccCC--chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---Hhh-hHHHHHHHHHhhCCh--H
Confidence 664443 232 333445566677777777644 223344444443 234 677777777766544 5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc
Q 009663 183 SWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH 262 (529)
Q Consensus 183 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~ 262 (529)
.|..+..+-.+.|.+.+|++-|-+ ..|+..|..++....+.|.|++-.+++...++. ...|.. =+.++-+|++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk---~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK---VREPYI--DSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---hcCccc--hHHHHHHHHH
Confidence 688899999999999999887744 456677888999999999999999988877755 444443 3567788888
Q ss_pred cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 263 TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
.+++.+.+.++. .|+........+-|...|.++.|.-+|. ++..|..+...+...|++..|...-+++
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888877666542 4677777778888888899998888875 4557888999999999999998887776
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
. +..||...-.+|...+.+.-| ++.. ..+.....-..-|+..|...|-+++...+++.. |++.-
T Consensus 1247 n---------s~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1247 N---------STKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred c---------chhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 3 567888888888887665543 2331 123335667788999999999999999999876 65543
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-CC------CchhHHHHHHHHHhcCCHHHHHH
Q 009663 422 -EVVWGSLLNGCKIYGRTDFAEFAVKKLIE-ID-PN------NGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 422 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
...|.-+.-.|.+ -++++..+.++-... .+ |. ....|.-+...|.+-..||.|.-
T Consensus 1312 HMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344444444443 345555555444433 11 21 34455666666666666666543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-06 Score=81.20 Aligned_cols=256 Identities=13% Similarity=0.008 Sum_probs=136.0
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhh----ccCCchHHHHHHHHHHHhCCCCC-ccHHHHHHH
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIG----HTGMLQLGKVIHGYVYRNGLDLD-SFISNALID 293 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 293 (529)
..+...|++++|.+.+++.... .|+. ..+.. ...+. ..+..+.+...+.. ..+..|+ ......+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD-----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHH
Confidence 3445567777777777766532 3322 22221 11111 23333344433333 1111122 223334455
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCH--HHHHHHHHHHhCC
Q 009663 294 MYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDG--VTFISLLNACTHG 367 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~--~~~~~l~~~~~~~ 367 (529)
.+...|++++|...+++..+ .+...+..+...+...|++++|...+++... ... .|+. ..|..+...+...
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~---~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD---TWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh---ccCCCcchhHHHHHHHHHHHHHC
Confidence 66777777777777776543 2344666677777777788888877777654 211 1222 2344566677777
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCC---CHHHHHHHHHHHHHcCC
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHY-G--CLVDLLGRAGRFEEALEV--V-KGM-KIEP---DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p---~~~~~~~l~~~~~~~g~ 437 (529)
|++++|..++++........+..... . .++.-+...|....+.++ + ... ...| ..........++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 88888888887765321111111111 1 222333334433322222 1 111 1001 11222345566778888
Q ss_pred HHHHHHHHHHHHhcC-C---C-----CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 438 TDFAEFAVKKLIEID-P---N-----NGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++|...++.+.... . . ........+.++...|++++|.+.+......+
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999998888876622 1 1 23444556667789999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-07 Score=77.90 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHhC
Q 009663 152 ETALVNSYSRSGNDIGIARKLFDEMSDR---NVVSWTAMISGYTRVGDIKNAASLFDSMPD--RDVPAWNS-VIAGCTQN 225 (529)
Q Consensus 152 ~~~l~~~~~~~g~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 225 (529)
+++++..+.+.. +++.|++++..-.+. +......+..+|-...++..|-..++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~-ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDA-RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHh-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 455555566666 677777766655442 334455566666666666666666666543 22222221 23445566
Q ss_pred CChhHHHHHHHHhhhcccCCCCCCHHHHHHHHH--HhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNIRPNQVTLVCALS--AIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
+.+.+|+.+...|.. .|+...-..-+. .....+++..+..+.++.-..| +..+.+.......+.|+++.
T Consensus 92 ~i~ADALrV~~~~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred cccHHHHHHHHHhcC------CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 666666666666631 232222211122 1234455555555555433211 22333333344455566666
Q ss_pred HHHHHhhcCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 304 ARRAFDRNSKK----RLTSWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 304 A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
|.+-|+...+- ....|+..+ +..+.|+++.|++...++.+
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH
Confidence 66666544332 122444333 23344555666666655555
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-06 Score=80.73 Aligned_cols=151 Identities=10% Similarity=-0.010 Sum_probs=77.9
Q ss_pred chhHHHHHH--HHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCC--------CCCCC
Q 009663 44 TNFYAFKLV--RFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRG--------QPQPN 113 (529)
Q Consensus 44 ~~~~~~~ll--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~ 113 (529)
|+.+--.++ +.|.--| +.+.|.+-.+.+++..+ |..|.+.+.+. ++.+-|.-.+..|.... .-.|+
T Consensus 725 d~~TRkaml~FSfyvtiG-~MD~AfksI~~IkS~~v--W~nmA~McVkT-~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIG-SMDAAFKSIQFIKSDSV--WDNMASMCVKT-RRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred CHHHHHhhhceeEEEEec-cHHHHHHHHHHHhhhHH--HHHHHHHhhhh-ccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 344444444 2345555 77777776666665433 55555555555 55555554444443210 00111
Q ss_pred cchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC-ChhhHHHHHHHHH
Q 009663 114 QFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR-NVVSWTAMISGYT 192 (529)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~-~~~~~~~ll~~~~ 192 (529)
.+=..+.-.....|.+++|+.++.+..+.+ .|=..|-..| .+++|.++-+.-... =-.||......+-
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQG-MWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcc-cHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 222222223355667777777777665532 1223444556 677777665543331 1234555555555
Q ss_pred hcCCHHHHHHHHhhCCC
Q 009663 193 RVGDIKNAASLFDSMPD 209 (529)
Q Consensus 193 ~~g~~~~A~~~~~~~~~ 209 (529)
..+|.+.|++.|++...
T Consensus 870 ar~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV 886 (1416)
T ss_pred hhccHHHHHHHHHhcCC
Confidence 66677777777766544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-06 Score=84.78 Aligned_cols=334 Identities=10% Similarity=0.046 Sum_probs=187.3
Q ss_pred CcchHHHHHHh--CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC------------
Q 009663 113 NQFIYPHVLKS--CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD------------ 178 (529)
Q Consensus 113 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~------------ 178 (529)
|..|-..+++. |...|+.+.|.+-.+.+. +...|..+.++|.+.. +.+-|.-.+-.|.+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~-RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTR-RLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhc-cccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555554 566677777766555443 3456677777777777 67666666655543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHH
Q 009663 179 RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALS 258 (529)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~ 258 (529)
.+...-.-..-.....|.+++|..+|++.+. |..|=..|...|.|++|.++-+.-- .+. =..||..-..
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~D-----RiH-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKD-----RIH-LRNTYYNYAK 866 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcc-----cee-hhhhHHHHHH
Confidence 1112222223334456777777777777654 3344455666677777776655321 111 1234444444
Q ss_pred HhhccCCchHHHHHHHHHH----------HhCC---------CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHH
Q 009663 259 AIGHTGMLQLGKVIHGYVY----------RNGL---------DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSW 319 (529)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 319 (529)
-+...++.+.|+++|++.- ...+ ..|...|......+-..|+.+.|+.+|.... -|
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~ 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DY 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hh
Confidence 4455566666666655421 1110 1234445555555566777777777776543 35
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-CCCC--ChhHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-RIEP--QIEHYGCL 396 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p--~~~~~~~l 396 (529)
.+++...|-.|+.++|-++-++-. |......+.+.|...|++.+|..+|.++..-. .+.. .-..-..|
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esg---------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESG---------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcc---------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 666677777788888877766542 44555677788888888888888887765210 0000 00011122
Q ss_pred HHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCCC-CchhHHHHH
Q 009663 397 VDLLGR--AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL----------IEIDPN-NGGYGIMLA 463 (529)
Q Consensus 397 ~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~p~-~~~~~~~l~ 463 (529)
...+.. ..+.-.|.++|++.|..- ..-+..|-+.|.+.+|+++.=+. ..++|+ ||......+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 222222 223445566666664221 22234456667666666543221 114443 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 009663 464 NIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~~~ 483 (529)
+.+....++++|..++-..+
T Consensus 1088 dFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 88888888888888765553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-06 Score=81.14 Aligned_cols=438 Identities=13% Similarity=0.053 Sum_probs=265.5
Q ss_pred hHHHHHHHHHHhCCCCchh-HHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHH
Q 009663 28 HLKQLQSFLTTLGQSQTNF-YAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRD 103 (529)
Q Consensus 28 ~~~~i~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 103 (529)
....++..+....+.++-. .|..|-..|.... +...|.+.|+..- ..+..++......+++. .+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 3344555555555555543 5666667777776 8888999998765 46677888999999999 999999998433
Q ss_pred HHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhh
Q 009663 104 MVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVS 183 (529)
Q Consensus 104 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~ 183 (529)
.-+......-...|..+.-.+...++...+..-|+...+.. +.|...|..+..+|.++| ++..|.++|.+...-++..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG-RYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC-ceehHHHhhhhhHhcCcHh
Confidence 33322101112233334444778889999999998888775 347889999999999999 9999999998887644332
Q ss_pred -HHH--HHHHHHhcCCHHHHHHHHhhCCCC----------ChhhHHHHHHHHHhCCChhHHHHHHHHh-------hhccc
Q 009663 184 -WTA--MISGYTRVGDIKNAASLFDSMPDR----------DVPAWNSVIAGCTQNGLFSDAISFFRRM-------GMEVS 243 (529)
Q Consensus 184 -~~~--ll~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~ 243 (529)
|.. ..-..+-.|.+.+|...+..+... -..++-.+...+.-.|-..+|.++++.- ..+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h-- 707 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH-- 707 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--
Confidence 222 223345678888888887776421 1123333333333333333333333322 111
Q ss_pred CCC-----------------------CCCHHHHHHHHHHhhccCCc---h---HHHHHHHHHHHhCCCCCccHHHHHHHH
Q 009663 244 DNI-----------------------RPNQVTLVCALSAIGHTGML---Q---LGKVIHGYVYRNGLDLDSFISNALIDM 294 (529)
Q Consensus 244 ~~~-----------------------~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (529)
.. .|+......+..-.-..+.. + -+.+.+-.-.+. ..+...|..|+..
T Consensus 708 -~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 708 -SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGIN 784 (1238)
T ss_pred -hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHH
Confidence 11 11111111111111111111 1 011111111111 1122333333333
Q ss_pred HHh----CC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 009663 295 YGK----CG----SLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 295 ~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~ 363 (529)
|.+ .| +...|+..+.+.. ..+..+|+.|.-. ...|++.-|...|-+.. ...+-...+|..+.-.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~----~sep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSR----FSEPTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhh----hccccchhheecccee
Confidence 322 11 2235666666533 3456678877665 66678888888877764 2233456778888888
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHc
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 435 (529)
+....+++.|...|...+ .+.| +...|..........|+.-++..+|..- +--|+..-|.+...-....
T Consensus 860 ~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred EEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 889999999999999987 5577 5667766666667788888888888652 3355666665555556667
Q ss_pred CCHHHHHHHHH----------HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 436 GRTDFAEFAVK----------KLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 436 g~~~~A~~~~~----------~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
|++++-+...+ +.....|+...+|...+....+.+.+.+|.....+.
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 76665555444 444466888889999888888888888888776665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-06 Score=80.07 Aligned_cols=398 Identities=15% Similarity=0.129 Sum_probs=235.9
Q ss_pred CCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHH
Q 009663 40 GQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPH 119 (529)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 119 (529)
|.|.-...-...++++...| .-+.|-++-+. ..|.. +.|..|.+. |.+.+|...-..=... ..|......
T Consensus 584 ~~p~~eklk~sy~q~l~dt~-qd~ka~elk~s--dgd~l---aaiqlyika-~~p~~a~~~a~n~~~l---~~de~il~~ 653 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTG-QDEKAAELKES--DGDGL---AAIQLYIKA-GKPAKAARAALNDEEL---LADEEILEH 653 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcC-chhhhhhhccc--cCccH---HHHHHHHHc-CCchHHHHhhcCHHHh---hccHHHHHH
Confidence 44434445566677777777 66666654221 12222 245667777 7776666554222111 345555555
Q ss_pred HHHhCccCCCchHHHHHHHHHHHhC----------------------CCCchhH-HHHHHHHHHhcCCCHHHHHHHHhhC
Q 009663 120 VLKSCPDVLESRGTKMVHTQIVKSG----------------------FEQYPVV-ETALVNSYSRSGNDIGIARKLFDEM 176 (529)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g----------------------~~~~~~~-~~~l~~~~~~~g~~~~~A~~~~~~~ 176 (529)
+..++.+..-+++|-.+|+.+.... ++..+.. -..-..-+...| +++.|..-|-+.
T Consensus 654 ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea 732 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEA 732 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHh
Confidence 5555555444555555554442110 0000000 001111122223 333333222221
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH
Q 009663 177 SDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPA--WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV 254 (529)
Q Consensus 177 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~ 254 (529)
.....-+.+......|.+|+.+++.+.+.+..+ |..+...|...|+++.|.++|.+.- .++
T Consensus 733 -----~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~------------~~~ 795 (1636)
T KOG3616|consen 733 -----NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD------------LFK 795 (1636)
T ss_pred -----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc------------hhH
Confidence 111223344556788899999999888766543 6777788999999999999998752 234
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhH
Q 009663 255 CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSEN 334 (529)
Q Consensus 255 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 334 (529)
-.|..|.+.|++..|.++-++. .|+......|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-+.|..+.
T Consensus 796 dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchH
Confidence 5677889999999998876543 45555666777777778889999999999988888875 3677888999999
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 335 SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
.+++..+-. |-. -..|-..+..-+...|+...|..-|-+.. -|.+-+.+|...+-|++|.++-+
T Consensus 869 mirlv~k~h-----~d~-l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 869 MIRLVEKHH-----GDH-LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhC-----hhh-hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 888887753 211 12455566667777888888887776553 23445667777777777777766
Q ss_pred hCCCCCCH-----HHHH-------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 415 GMKIEPDE-----VVWG-------------------SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 415 ~~~~~p~~-----~~~~-------------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
.-| ..+. ..|. .-++-.+..+.++-|.++-+-..+ ...+.+...++..+...|
T Consensus 933 teg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledeg 1009 (1636)
T KOG3616|consen 933 TEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEG 1009 (1636)
T ss_pred ccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhcc
Confidence 552 1111 1111 111112333444444444433322 225567778888889999
Q ss_pred CHHHHHHHHHHHhhCCCccCC
Q 009663 471 KWDEVRKVRKMLKDRNAYKTP 491 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~~~~~~ 491 (529)
++++|-+.+-+..+.+-....
T Consensus 1010 k~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen 1010 KFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred chhhhhHhhHHHhhcccccch
Confidence 999998888777777654433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.7e-06 Score=89.02 Aligned_cols=328 Identities=12% Similarity=0.033 Sum_probs=209.2
Q ss_pred HHHHhcCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----C----C--h--hhHHHHHH
Q 009663 157 NSYSRSGNDIGIARKLFDEMSD----RNVVSWTAMISGYTRVGDIKNAASLFDSMPD----R----D--V--PAWNSVIA 220 (529)
Q Consensus 157 ~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~li~ 220 (529)
......| +++.+...++.+.. .+..........+...|++++|...+..... . + . .....+..
T Consensus 382 ~~l~~~g-~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQG-ELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcC-ChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3455567 78887777777642 2333334445556678999998888876421 1 1 1 12222334
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-----CccHHHHHHHH
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL-----DSFISNALIDM 294 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~ 294 (529)
.+...|++++|...+++.......+..+ .....+.+...+...|+++.|...+.......... ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 5678999999999999876420001000 11234455556778999999999998877532211 12344556778
Q ss_pred HHhCCCHHHHHHHHhhcCC-------CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHH
Q 009663 295 YGKCGSLKEARRAFDRNSK-------KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLL 361 (529)
Q Consensus 295 ~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~ 361 (529)
+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+...... ...+. ...+..+.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~la 619 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS-NYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh-ccCchHHHHHHHHHH
Confidence 8899999999998865332 11 12344556667778999999999988765211 11122 23344456
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCC-C-CCH----HHHHHHHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY-----GCLVDLLGRAGRFEEALEVVKGMKI-E-PDE----VVWGSLLN 430 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~ 430 (529)
......|++++|...++..............+ ...+..+...|+.+.|.+++..... . ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67778999999999998875421111111111 1123445668999999999877621 1 111 12345666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 431 GCKIYGRTDFAEFAVKKLIEID------PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++...|++++|...++++.... +....+...++.++.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7888999999999999988742 1223467778889999999999999999997665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-07 Score=77.34 Aligned_cols=148 Identities=12% Similarity=0.115 Sum_probs=115.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -+.+...|..|...|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-------~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~ 85 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-------PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLW 85 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-------cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 3567788888776555443321 11 0 122356777888788777743 13478899999999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC-KIYGR--TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
.|++++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988 5566 677777777764 67777 5999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 009663 478 VRKMLKDRNA 487 (529)
Q Consensus 478 ~~~~~~~~~~ 487 (529)
.++++.+...
T Consensus 166 ~~~~aL~l~~ 175 (198)
T PRK10370 166 LWQKVLDLNS 175 (198)
T ss_pred HHHHHHhhCC
Confidence 9999987765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=96.00 Aligned_cols=225 Identities=16% Similarity=0.154 Sum_probs=179.7
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNSKK--------RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV 355 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~ 355 (529)
+...|-..+......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+ .--...
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-----ycd~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-----YCDAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-----hcchHH
Confidence 4556777788888899999999999876542 123788888888888888889999999865 222235
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP---DEVVWGSLLNG 431 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 431 (529)
.|..|...|.+.+.+++|.++++.|.++++ -....|..++..+.+.++-++|.+++++. ..-| ........+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 577888899999999999999999998765 56788999999999999999999999887 4334 34555666777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKT 511 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (529)
-.+.|+.+++..+|+..+...|.....|..+++.-.++|+.+.++.+|+++...++.+-... -....|++..++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK------fffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK------FFFKKWLEYEKS 1683 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH------HHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999999988543221 122356777888
Q ss_pred CCChHHHHHH
Q 009663 512 HPRTEEIYDA 521 (529)
Q Consensus 512 ~~~~~~~~~~ 521 (529)
||+.+.+..+
T Consensus 1684 ~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1684 HGDEKNVEYV 1693 (1710)
T ss_pred cCchhhHHHH
Confidence 8886666544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.9e-06 Score=77.38 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHH---HHHhCccCCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCCHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPH---VLKSCPDVLESRGTKMVHTQIVKSGFEQY-PVVETALVNSYSRSGNDIG 167 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 167 (529)
|++++|.+.+++..+.. |.|...+.. ........+....+.+.+... ....|+ ......+...+...| +++
T Consensus 57 g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G-~~~ 131 (355)
T cd05804 57 GDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG-QYD 131 (355)
T ss_pred CCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC-CHH
Confidence 78888888888877764 344434331 112222234444555544431 111222 234445556777788 888
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Ch--hhHHHHHHHHHhCCChhHHHHHHHH
Q 009663 168 IARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPDR-----DV--PAWNSVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 168 ~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~ 237 (529)
+|.+.+++..+ | +...+..+...+...|++++|...+++..+. +. ..|..+...+...|++++|..++++
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888887765 3 3456667777778888888888887775431 21 2344677778888888888888887
Q ss_pred hh
Q 009663 238 MG 239 (529)
Q Consensus 238 m~ 239 (529)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 64
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-07 Score=80.85 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=115.0
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCH-H
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNSKK---RL---TSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDG-V 355 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~-~ 355 (529)
....+..+...+...|+++.|...|+++... +. .++..+..++...|++++|...++++.+ ... .|.. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR---LHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCchHH
Confidence 3445566667777778888887777765432 21 2556667777777778888877777764 111 1111 1
Q ss_pred HHHHHHHHHhCC--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 009663 356 TFISLLNACTHG--------GLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG 426 (529)
Q Consensus 356 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 426 (529)
++..+..++... |+++.|.+.++.+.+. .|+. ..+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 333344444433 5677777777777644 3432 22222211100 00000 00112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+...+.+.|++.+|+..++++.+..|++ +..+..++.++.+.|++++|..+++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45667889999999999999999987754 4788999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-05 Score=77.68 Aligned_cols=357 Identities=13% Similarity=0.139 Sum_probs=203.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSY 159 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (529)
-+-|+.-.-+. ++..-.+..++.....| ..|..+++++.+.|..+++-.+-. ++.+. .-=+..+.-|
T Consensus 841 ~deLv~EvEkR-NRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~f------LkeN~----yYDs~vVGkY 907 (1666)
T KOG0985|consen 841 VDELVEEVEKR-NRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERF------LKENP----YYDSKVVGKY 907 (1666)
T ss_pred hHHHHHHHHhh-hhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHh------cccCC----cchhhHHhhh
Confidence 34455566666 77888888888888888 578899999999988765433211 11111 1111122223
Q ss_pred HhcCCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHh-----------hC-----C-CCChhh
Q 009663 160 SRSGNDIGIARKLFDEMSD--------RNVVSWTAMISGYTRVGDIKNAASLFD-----------SM-----P-DRDVPA 214 (529)
Q Consensus 160 ~~~g~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~A~~~~~-----------~~-----~-~~~~~~ 214 (529)
|... |+-.|.-.|++-.. ..-..|-...+.+.+..|.+-=.+++. +. . ..|+..
T Consensus 908 CEKR-DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~ 986 (1666)
T KOG0985|consen 908 CEKR-DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEE 986 (1666)
T ss_pred hccc-CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHH
Confidence 3333 33322222222111 000112222222222222222111111 10 0 124444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCC-CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC------------
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDN-IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL------------ 281 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------ 281 (529)
...-+.++...+-..+-+++++++.-. +. +.-+...-+.++-...+ -+...+.++.+++-..+.
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~--~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~L 1063 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLD--NSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQL 1063 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcC--CcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhH
Confidence 555566666666666667776666421 11 11111112222222222 222333344333332211
Q ss_pred -----------CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 282 -----------DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 282 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
..+..+.+.|++ .-+..+.|.++-++..+ ...|..+..+-.+.|...+|++-|-+..
T Consensus 1064 yEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikad------- 1131 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKAD------- 1131 (1666)
T ss_pred HHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcC-------
Confidence 111222222221 22334444444443332 3479999999999999999999887662
Q ss_pred CCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 009663 351 RPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLN 430 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 430 (529)
|...|.-.+..+.+.|.+++-.+++..++++ .-.|.. =+.|+-+|++.++..+.++++. .|+......+.+
T Consensus 1132 --Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 --DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred --CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 5567999999999999999999999988876 445544 4578999999999988777663 588888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
-|...|.++.|.-+|. +.+-|..|+..+...|.+..|.+.-++.
T Consensus 1203 rcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999998888877 4455667777777777777776554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=76.33 Aligned_cols=94 Identities=9% Similarity=-0.092 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++.+++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334555666666666666666665 3344 45566666666666667777777777776666666666666666666667
Q ss_pred CHHHHHHHHHHHhhCC
Q 009663 471 KWDEVRKVRKMLKDRN 486 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~ 486 (529)
++++|+..++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777776666665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-05 Score=72.59 Aligned_cols=235 Identities=14% Similarity=0.073 Sum_probs=164.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHH----
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNA---- 290 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 290 (529)
...+..+..+..+++.|++.+..... +.-+..-++....++...|.+..+...-+...+.|-. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~e-----l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~ 300 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALE-----LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA 300 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh-----HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH
Confidence 55677788888899999999998873 3534444555566788889888888877777766643 1222333
Q ss_pred ---HHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhC
Q 009663 291 ---LIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTH 366 (529)
Q Consensus 291 ---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~ 366 (529)
+..+|.+.++++.++..|.+....... -....+....+++........ -+.|... -...-...+.+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a-----~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKA-----YINPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHH-----hhChhHHHHHHHHHHHHHh
Confidence 334566677888898888774322111 112223344455555555442 2334331 12223556778
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
.|++..|...|.++++. .| |...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++....+++.|.+
T Consensus 371 ~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred ccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999865 46 6889999999999999999999887776 45554 4556556667777889999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
.|.+.++.+|++..+...+.++...
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999998888888887764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-07 Score=74.26 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=101.9
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 336 ICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 336 ~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
..++++..+ +.|+. +..+...+...|++++|...|+.+.. +.| +...|..+..++.+.|++++|...|+
T Consensus 13 ~~~~~~al~-----~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 13 EDILKQLLS-----VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHH-----cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456666643 44553 45567778889999999999999884 456 68889999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 415 GM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 415 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
+. ...| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 98 5555 68889999999999999999999999999999999999988776654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-06 Score=82.31 Aligned_cols=220 Identities=19% Similarity=0.177 Sum_probs=169.5
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
+|--..-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+-. .-+|+...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~l-----ek~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQEL-----EKDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHh-----cCCCcchhHHHhh
Confidence 3444455678889999999999999998754 67778999999999999999988875 2678888999988
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 439 (529)
...-..--+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|..+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 8887777788998888776432 1112222334578999999999865 6566 6788988988999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHH
Q 009663 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIY 519 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (529)
.|.+.|...+.++|++...|+++..+|.+.|+-.+|...+++..+-+.. +...| .. ...+..+. +..+++.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iW---EN--ymlvsvdv--ge~eda~ 607 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIW---EN--YMLVSVDV--GEFEDAI 607 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeee---ec--hhhhhhhc--ccHHHHH
Confidence 9999999999999999999999999999999999999999999888743 22233 21 12233333 5567777
Q ss_pred HHHHHHHhc
Q 009663 520 DALESMVAL 528 (529)
Q Consensus 520 ~~~~~~~~~ 528 (529)
..+.+|.+.
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 777776553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.1e-07 Score=83.29 Aligned_cols=249 Identities=14% Similarity=0.056 Sum_probs=170.9
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG 299 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 299 (529)
.-+.+.|+..+|.-.|+...+. -+-+...|..|.......++-..|+..+.+.++..+. +..+.-.|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 3456677777777777766543 2224456666666666777777777777777776543 5556666777777777
Q ss_pred CHHHHHHHHhhcCCCChh-HHHHHH---------HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc
Q 009663 300 SLKEARRAFDRNSKKRLT-SWNSMI---------NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL 369 (529)
Q Consensus 300 ~~~~A~~~~~~~~~~~~~-~~~~li---------~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~ 369 (529)
.-..|.+.++.-...... .|.... ..+..........++|-++.. ..+..+|......|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~--~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR--QLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH--hCCCCCChhHHhhhHHHHhcchH
Confidence 777777777642110000 000000 111112223445556655543 15545677777777777888999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 370 VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+++|...|+.+. .++| |...|+.|.-.++...+.++|+.-|.+. .+.|. +.+...|.-+|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998 5578 6889999999999999999999999998 78886 5677788889999999999999999
Q ss_pred HHHhcCCC----------CchhHHHHHHHHHhcCCHHHHHHH
Q 009663 447 KLIEIDPN----------NGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 447 ~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
.++.+.+. +..+|..|-.++.-+++.|-+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99886644 124777777777777777755443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-06 Score=86.16 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHY 393 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 393 (529)
...+..|.....+.|+.++|+.+++...+ +.|+. .....+...+.+.+++++|...+++.... .| +....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~-----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ-----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHH
Confidence 44556666666666666666666666633 44433 33445555666666666666666666532 44 34555
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
..+..++.+.|++++|..+|++. ...|+ ..++..+..++...|+.++|...|+++.+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55666666666666666666665 22332 5566666666666666666666666666643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0012 Score=71.76 Aligned_cols=333 Identities=11% Similarity=0.032 Sum_probs=208.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhC
Q 009663 152 ETALVNSYSRSGNDIGIARKLFDEMSDRNVV--SWTAMISGYTRVGDIKNAASLFDSMPD----RDVPAWNSVIAGCTQN 225 (529)
Q Consensus 152 ~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 225 (529)
+......+...| ++.+|..........+.. ............|+++.+...++.+.. .++.........+...
T Consensus 344 h~raa~~~~~~g-~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQG-FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344455667777 788777766666543221 112223345567888888888887742 2333334445566788
Q ss_pred CChhHHHHHHHHhhhcccCCC---CCCHH--HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc----cHHHHHHHHHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNI---RPNQV--TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS----FISNALIDMYG 296 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~---~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 296 (529)
|+++++...+........... .+... ....+...+...|+++.|...++...+.-...+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999987754211111 11111 1222233456889999999999988764222121 23455666778
Q ss_pred hCCCHHHHHHHHhhcCC-------CC--hhHHHHHHHHHHHcCChhHHHHHHHHHhhccc-CCCC--C-CHHHHHHHHHH
Q 009663 297 KCGSLKEARRAFDRNSK-------KR--LTSWNSMINSFALHGQSENSICVFEEMMRCQD-HNIR--P-DGVTFISLLNA 363 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--p-~~~~~~~l~~~ 363 (529)
..|++++|...+++... .. ..++..+...+...|++++|...+++...... .+.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 89999999999876542 11 12455667788899999999999888765211 1211 1 22334455556
Q ss_pred HhCCCcHHHHHHHHHHhHHhcC-CCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHH-----HHHHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYR-IEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPDEVVW-----GSLLNG 431 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~-----~~l~~~ 431 (529)
+...|++++|...+.+...... ..+ ....+..+...+...|+.++|.+.+++. ........+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 6778999999999988754211 112 2344555677788999999999888776 111111111 112234
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGY----GIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...|+.+.|..++.......+..... +..++.++...|++++|...+++....
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456889999999987766533222221 456788899999999999999988754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-05 Score=66.11 Aligned_cols=244 Identities=14% Similarity=0.075 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHhhCC-C-CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHH-H
Q 009663 194 VGDIKNAASLFDSMP-D-RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLG-K 270 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~ 270 (529)
.|++..++..-.... . .++..-..+.++|...|.+...+.-... +-.|....+..+.......++.+.- .
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~-------~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE-------GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc-------ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 344444444333322 1 2333333455666666665443322211 2233333333333333333333222 2
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
++.+.+......-+......-...|+..|++++|++...... +....-.=+..+.+..+.+-|...+++|.+ +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-----i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ-----I 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c
Confidence 233333333332222233333445556666666666655422 111222222334445555555555555543 1
Q ss_pred CCCHHHHHHHHHHHh----CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHH
Q 009663 351 RPDGVTFISLLNACT----HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVV 424 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~ 424 (529)
.+..|.+.|..++. ..+.+..|.-+|+++.+ ...|++.+.+...-++...|++++|..++++. +...++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 13334444443332 22345555555555543 23455555555555555555555555555554 22234444
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhcCCC
Q 009663 425 WGSLLNGCKIYGRTDF-AEFAVKKLIEIDPN 454 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~ 454 (529)
...++..-...|...+ ..+.+.+.+...|.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 4444444444443322 23444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.5e-06 Score=69.43 Aligned_cols=245 Identities=13% Similarity=0.047 Sum_probs=161.1
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (529)
++-+.-.|++..++..-.... +.+.+...-..+.++|...|.+.....- +.. |-.|.......+......-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~-----~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFS-----SSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCc
Confidence 345556788888877766654 2224444444555666666654433221 111 1123333333334333334
Q ss_pred CCHHHHH-HHHhhcCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 299 GSLKEAR-RAFDRNSKK----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 299 g~~~~A~-~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
++.+.-. ++.+.+..+ +......-...|+..|++++|++..+.. . +......=...+.+..+.+-|
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~----~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----E----NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----c----hHHHHHHHHHHHHHHHHHHHH
Confidence 4433332 333333332 2223333346788999999999998873 2 222333334456677889999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEPQIEHYGCLVDLLG----RAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
.+.++.|.+ + .+..+.+.|..++. ..+.+.+|.-+|++| +..|+..+.+-...++...|++++|..+++.
T Consensus 157 ~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 999999973 2 34556666666665 456799999999999 5889999999999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHH-HHHHHHhhC
Q 009663 448 LIEIDPNNGGYGIMLANIYGELGKWDEVR-KVRKMLKDR 485 (529)
Q Consensus 448 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 485 (529)
++..+++++.+...++.+-...|+-.++. +.+.+++..
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999999999998888888876554 456666544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-06 Score=80.79 Aligned_cols=218 Identities=12% Similarity=0.039 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHH
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMIN 324 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 324 (529)
+|-...-..+...+.+.|-...|..++++.. .+...+.+|...|+..+|..+..+-.+ ++...|..+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3444444556677888888888988888653 456688999999999999998866543 56668888888
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
.....--+++|.++.+.... + .-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+.-+..+.
T Consensus 466 v~~d~s~yEkawElsn~~sa----r------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA----R------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hccChHHHHHHHHHhhhhhH----H------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHH
Confidence 87777778899988887642 1 112222233447899999999998774 344 577888888899999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
++++.|.+.|... ...|| ...||.+-.+|.+.|+-.+|...+.++.+.+-++..+|.+..-...+-|.+++|.+.+.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999887 56775 678999999999999999999999999998888899999988889999999999999999
Q ss_pred HhhCC
Q 009663 482 LKDRN 486 (529)
Q Consensus 482 ~~~~~ 486 (529)
+.+..
T Consensus 613 ll~~~ 617 (777)
T KOG1128|consen 613 LLDLR 617 (777)
T ss_pred HHHhh
Confidence 87554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-06 Score=69.30 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=115.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL 399 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 399 (529)
..+-..+...|+-+....+..... .....|.......+....+.|++..|...+.+... .-++|...|+.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~----~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA----IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh----ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHH
Confidence 555666777778777777777653 22333444455577777788888888888888763 335578888888888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++..+....+.+..+...++.+....|++++|..
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 88888888888877776 4444 566777788788888888888888888888777788888888888888888888887
Q ss_pred HHHH
Q 009663 478 VRKM 481 (529)
Q Consensus 478 ~~~~ 481 (529)
+..+
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 6543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-05 Score=73.45 Aligned_cols=212 Identities=11% Similarity=-0.018 Sum_probs=121.8
Q ss_pred cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCCh--hHHH
Q 009663 263 TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG-SLKEARRAFDRNSKK---RLTSWNSMINSFALHGQS--ENSI 336 (529)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~--~~a~ 336 (529)
.++.++|+.+..++++..+. +..+|+....++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34445555555555544322 2223333333444444 355666665554332 233444443334444442 4566
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc---CCh----HH
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA---GRF----EE 408 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~ 408 (529)
.+++++.+ .-+-|...|....-++...|+++++++.++++.+. .| +...|+.....+.+. |.. ++
T Consensus 129 ~~~~kal~----~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 129 EFTRKILS----LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHH----hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 66666653 12235566666666666677777777777777743 23 455565555544443 222 35
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC------------
Q 009663 409 ALEVVKGM-KIEP-DEVVWGSLLNGCKIY----GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG------------ 470 (529)
Q Consensus 409 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------ 470 (529)
.+++..++ ...| |...|+.+...+... ++..+|...+.++...+|+++.+...|+..|....
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 55665444 4455 566777777766652 44567888888888888888888888988887632
Q ss_pred ------CHHHHHHHHHHH
Q 009663 471 ------KWDEVRKVRKML 482 (529)
Q Consensus 471 ------~~~~a~~~~~~~ 482 (529)
..++|..+++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 236788888877
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00057 Score=64.47 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
.+|...|+.-.+..-...|..+|.++.+ .+..+ ....+++++..+|. ++.+-|.++|+.-.+.+|- ++.--..
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~---~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~ 440 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKARE---DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLK 440 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHH
Confidence 3788888888889999999999999988 77777 67778888887774 8899999999998876543 3445567
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 396 LVDLLGRAGRFEEALEVVKGM---KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.++.+...|+-..|..+|++. .+.|+ ..+|..++..-..-|+...+.++-++....-|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 788888999999999999998 23443 57899999999999999999999888877555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-05 Score=80.25 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=177.3
Q ss_pred hhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHh-CCCC---CccHHHHHHHHHHhCCCHHH
Q 009663 228 FSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN-GLDL---DSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~ 303 (529)
.+.|.++-+.++ +-+-+...|-..+.-....++.++|+++.++++.. ++.- -..+|.++++.-..-|.-+.
T Consensus 1441 pesaeDferlvr-----ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1441 PESAEDFERLVR-----SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CcCHHHHHHHHh-----cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 445555555554 22444556777777788889999999999888754 2211 23367777777777788888
Q ss_pred HHHHHhhcCCC-C-hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 304 ARRAFDRNSKK-R-LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 304 A~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
..++|++..+- | ...|..|...|.+.+.+++|.++++.|.+ .+.-....|...+..+.+.++-++|..++.++.
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K----KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK----KFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH----HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88999988764 3 34889999999999999999999999985 344556788899999999999999999999988
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Q 009663 382 KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGG 457 (529)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 457 (529)
+...-.-........++.-.+.|+.+.+..+|+.. ..+-....|+.+++.-.++|+.+.+..+|+++..+. |....
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 64221224667777788888999999999999987 333357789999999999999999999999999865 44444
Q ss_pred hH-HHHHHHHHhcCCHHHHHHH
Q 009663 458 YG-IMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 458 ~~-~~l~~~~~~~g~~~~a~~~ 478 (529)
.+ -.....-...|+-+.+..+
T Consensus 1672 fffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHHhcCchhhHHHH
Confidence 33 3333333344665544443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00036 Score=65.79 Aligned_cols=185 Identities=9% Similarity=0.074 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHH---hCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNAC---THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (529)
.+++..++++... .-..-+..+|..+...- ...+..+.....++++.....+.|+ -+|..++..-.+..-+..
T Consensus 309 t~e~~~~yEr~I~---~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 309 TDEAASIYERAIE---GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHH
Confidence 3556666666553 22222333443333221 1122355666677777655444454 467778888888888999
Q ss_pred HHHHHHhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 409 ALEVVKGM---KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 409 A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
|..+|.++ +..+ ++.+..+++..++ .++.+-|.++|+-.+...++++......+..+...|+-..+..+|++...
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999888 3334 5667777777665 67888999999999998898888888888888999999999999999988
Q ss_pred CCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHHh
Q 009663 485 RNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVA 527 (529)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
.++.++... ..-..|+.-..+-|+...++++-+|+..
T Consensus 464 s~l~~~ks~------~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 464 SVLSADKSK------EIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ccCChhhhH------HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 865443321 1112344555566777778777777653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.9e-06 Score=69.55 Aligned_cols=153 Identities=11% Similarity=0.134 Sum_probs=111.2
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
+..|...|+++.+....+.+..+. ..+...++.+++...+++..+ .-+.+...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~----~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR----ANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHH
Confidence 446677777777655443322211 011125566777777777753 33456778888889999999999
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 372 QGRAYFKLMTKTYRIEP-QIEHYGCLVDL-LGRAGR--FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
.|...|++..+ +.| +...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|
T Consensus 91 ~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999884 356 57788888876 467777 59999999988 5566 6778888888899999999999999
Q ss_pred HHHHhcCCCCchhH
Q 009663 446 KKLIEIDPNNGGYG 459 (529)
Q Consensus 446 ~~~~~~~p~~~~~~ 459 (529)
+++++..|.+..-+
T Consensus 168 ~~aL~l~~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHhhCCCCccHH
Confidence 99999887654443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-07 Score=53.77 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 385 RIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 385 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=68.24 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=76.9
Q ss_pred CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 386 IEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 386 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..| +......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++.+.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 345 3455666677777888888888888776 3344 567777777778888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 463 ANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+.++...|++++|...+++..+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888887777654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-05 Score=79.08 Aligned_cols=375 Identities=12% Similarity=0.034 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARK 171 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~ 171 (529)
.+...|+..|-+..+.. +.=...|..+...|...-+...|.+.|+...+.+ .-+......+.+.|++.. +++.|..
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~-~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES-TWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc-cHHHHHH
Confidence 44566666666655543 2334566677777766667777777777776654 235566677777777777 7777777
Q ss_pred HHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 172 LFDEMSDRN-----VVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 172 ~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
+.-...+.+ ...|-...-.|.+.++...|+.-|+.... .|...|..++.+|...|++..|+++|.+..
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---- 623 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---- 623 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH----
Confidence 643333311 12233334445666777777777766543 355677788888888888888888887775
Q ss_pred CCCCCCHHHHHHHHH-HhhccCCchHHHHHHHHHHHhC------CCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC----
Q 009663 244 DNIRPNQVTLVCALS-AIGHTGMLQLGKVIHGYVYRNG------LDLDSFISNALIDMYGKCGSLKEARRAFDRNS---- 312 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 312 (529)
.+.|+...-..... ..+..|.+.++...+..+.... ..--..++-.+...+.-.|-..+|..++++-.
T Consensus 624 -~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 624 -LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred -hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45665432222222 2456677777777777665421 11111222222222222333333333332211
Q ss_pred -------CCChhHHHHHHHHH---HHcC--Chh-HHHHHH-HHHhhcccCCCCC--------------------CHHHHH
Q 009663 313 -------KKRLTSWNSMINSF---ALHG--QSE-NSICVF-EEMMRCQDHNIRP--------------------DGVTFI 358 (529)
Q Consensus 313 -------~~~~~~~~~li~~~---~~~~--~~~-~a~~~~-~~m~~~~~~~~~p--------------------~~~~~~ 358 (529)
..+...|-.+-.++ ++.. -+. ....++ .+... .+.-| +..+|.
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~---~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEK---TGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHh---cccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 11111222222111 1111 000 000111 11111 11111 112222
Q ss_pred HHHHHHhC--------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 009663 359 SLLNACTH--------GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSL 428 (529)
Q Consensus 359 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 428 (529)
.+...|.+ ..+...|...+...++- ...+..+|+.|.-. ...|++.-|...|-+- ..+....+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 22222221 11223445555544421 11233344444332 4445555555444333 222356667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
...+....+++.|...|.+...++|.+...|...+.+....|+.-++..++.-
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77777788888888888888888888888888777777777877777776654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-07 Score=53.81 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=26.6
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT 73 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~ 73 (529)
.|++||..+|+.||.+|++.| ++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G-~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAG-RVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCC-CHHHHHHHHHhCc
Confidence 367788888888888888887 8888888887764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=71.29 Aligned_cols=183 Identities=15% Similarity=0.019 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC--CccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---Chh---H
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL--DSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLT---S 318 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---~ 318 (529)
......+..+...+...|+++.|...++.+.+..+.. ...++..+..++...|++++|...|+++.+. +.. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3355677778888999999999999999998875421 1246677889999999999999999987543 222 4
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 319 WNSMINSFALH--------GQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 319 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
+..+..++... |+.++|.+.|+.+.. ..|+.. ....+..... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~~~~----~------~~~~~-------- 166 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-----RYPNSEYAPDAKKRMDY----L------RNRLA-------- 166 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-----HCCCChhHHHHHHHHHH----H------HHHHH--------
Confidence 55566666665 778999999999864 345432 2222111100 0 00000
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIE---P-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.....+...|.+.|++++|...+++. ... | ....+..++.++...|++++|...++.+....|
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11124566788999999999998887 222 2 356788888999999999999998888877655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=67.21 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 009663 350 IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGS 427 (529)
Q Consensus 350 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 427 (529)
..|+......+-..+...|+-+....+...... ....+......++....+.|++.+|...|.+. .-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 344333225555667777888888777777542 22335667777999999999999999999998 44668999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+..+|.+.|++++|...|.++.++.|+++.+.+.++..|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-06 Score=67.71 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
....-.+...+...|++++|.++|+-. .+.| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444555666778999999999999988 5556 67788889999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCC
Q 009663 468 ELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~~ 486 (529)
..|+.+.|.+.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=73.23 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=139.9
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcC-ChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC
Q 009663 291 LIDMYGKCGSLKEARRAFDRNSKKR---LTSWNSMINSFALHG-QSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 291 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
+-..+...++.++|+..++++.+.+ ..+|+....++...| ++++++..++++.+ . -+.+...|+.....+.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~---~-npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE---D-NPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH---H-CCcchHHhHHHHHHHHH
Confidence 3444556678889999988776543 346666666677777 67999999999875 2 22344556655444555
Q ss_pred CCc--HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCH
Q 009663 367 GGL--VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY---GRT 438 (529)
Q Consensus 367 ~~~--~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~ 438 (529)
.|. .+++..+++++.+. .| +..+|+....++.+.|+++++++.++++ ...| +...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 555 36778888888743 55 6888999999999999999999999998 4444 677787777666554 222
Q ss_pred ----HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCc
Q 009663 439 ----DFAEFAVKKLIEIDPNNGGYGIMLANIYGEL----GKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 439 ----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~ 488 (529)
++++....+++..+|++.++|..+..++... ++..+|.+++.+..+.++.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 5688888899999999999999999998873 4557798888887765543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-05 Score=75.85 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC 432 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 432 (529)
.....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33456677777888999999999999854 455 4455888888889999999999887 3344 677777777789
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+.++++.|+.+.+++.+..|++-..|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999998885
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.7e-05 Score=62.69 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=109.6
Q ss_pred ccCCchHHHHHHHHHHH---hC-CCCCcc-HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHH---HHHHHHHcCChh
Q 009663 262 HTGMLQLGKVIHGYVYR---NG-LDLDSF-ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNS---MINSFALHGQSE 333 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~ 333 (529)
...+.++..+++..+.. .| ..++.. +|..++-+....|+.+.|..+++++...=+.++.. -...+...|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 34566777777776653 23 233332 34444555556677777777776654321111111 112234456777
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
+|+++++...+ .. +-|..++---+...-..|+.-+|++-+....+ .+..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~---dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLE---DD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhc---cC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 77777777753 22 33445555445455556666666666666664 33556777777777777777777777777
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 414 KGM-KIEP-DEVVWGSLLNGCKIYG---RTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 414 ~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
+++ -+.| ++..+..+.+.+.-.| +...|.+.|.+++++.|.+...+..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 776 3344 4555556665533332 4566677777777776644444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0043 Score=62.39 Aligned_cols=405 Identities=15% Similarity=0.108 Sum_probs=226.1
Q ss_pred ChhHHHHHhhcCC--CCChhHHHHHHHHH--hcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHH
Q 009663 61 NLTYARFIFDHLT--TPNTYLYTAMITAY--ASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136 (529)
Q Consensus 61 ~~~~A~~~~~~~~--~~~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (529)
++..|.+..+.+. .||.. |...+.++ .+. |+.++|..+++.....+ ..|..|...+-..|...+..++|..+
T Consensus 24 qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRL-GKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHh-cCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 6778877777765 45544 33333333 456 88888888888776665 34778888888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCCHHH----HHHHHhhCCCCChhhHHHHHHHHHhcC----------CHHHHHH
Q 009663 137 HTQIVKSGFEQYPVVETALVNSYSRSGNDIGI----ARKLFDEMSDRNVVSWTAMISGYTRVG----------DIKNAAS 202 (529)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~----A~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~A~~ 202 (529)
++...... |+......+..+|.+.+ ++.+ |.++++...+ +...+-++++.+...- -..-|.+
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~-~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREK-SYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 88887753 45666667777777776 5554 5556664443 3333334444433321 1334556
Q ss_pred HHhhCCCCC--hhh---HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 009663 203 LFDSMPDRD--VPA---WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVY 277 (529)
Q Consensus 203 ~~~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 277 (529)
.++.+.+.+ ..+ ...-...+...|++++|++++..-..+ .-.+-+...-+.-+..+...+++.+..++-.++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~--~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE--KLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 666655443 111 122234456678888888888543322 1223344444455666778888888888888888
Q ss_pred HhCCCCCccHHHHHHHHHHh----------------CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHH---HcCChhHHHH
Q 009663 278 RNGLDLDSFISNALIDMYGK----------------CGSLKEARRAFDRNSKK-RLTSWNSMINSFA---LHGQSENSIC 337 (529)
Q Consensus 278 ~~~~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~~~a~~ 337 (529)
..|... |...++.+.+ .+..+...+...+.... --.+|-+-+.++. ..|+.+++.-
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 877532 3333332211 11222222222222211 1123444444443 3477777655
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh-------HHHHHHHHHHhcCC-----
Q 009663 338 VFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE-------HYGCLVDLLGRAGR----- 405 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~----- 405 (529)
.|-+- -|-.|- |..=+..|...=..++...++..... ..++.. -+...+..-.-.|.
T Consensus 330 ~y~~k-----fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 330 YYFKK-----FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred HHHHH-----hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 44332 333331 22222233322233444444444431 122211 01122222222232
Q ss_pred hHHHHHHHHhC------C------CCCC---------HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCchhHHH
Q 009663 406 FEEALEVVKGM------K------IEPD---------EVVWGSLLNGCKIYGRT---DFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 406 ~~~A~~~~~~~------~------~~p~---------~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
-+....++.+. | +-|. ..+.+.|++.|.+.++. -+|+-+++.....+|.|..+-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 12222222221 1 1222 23456777888887764 46788888888889989999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRNAYKT 490 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 490 (529)
++.+|.-.|-+..|.+.++.+--+++..+
T Consensus 479 LiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 479 LIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 99999999999999999988866666543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0002 Score=66.75 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 442 (529)
..|+++.|+..++.+.+. .| |+..+....+.+.+.|+.++|.+.++++ ...|+ ...+..+..++.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 457777777777777643 44 4555556667777777777777777776 45565 555666677777777777777
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
..+++....+|+++..|..|+.+|...|+..++.....+..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777777777777777777777777766666665555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00036 Score=59.38 Aligned_cols=189 Identities=13% Similarity=0.085 Sum_probs=140.7
Q ss_pred hCCChhHHHHHHHHhhhcccCC-CCCCHHH-HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCH
Q 009663 224 QNGLFSDAISFFRRMGMEVSDN-IRPNQVT-LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSL 301 (529)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 301 (529)
...+.++.++++.++......| ..|+..+ |..++-+....|+.+.|...++.+.+.- +-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 3457788888888886543335 5666654 4456667788899999999999988775 22333333333345568999
Q ss_pred HHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009663 302 KEARRAFDRNSKKR---LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFK 378 (529)
Q Consensus 302 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 378 (529)
++|+++|+.+.+.| .+++..-+...-..|+.-+|++-+.... ..+.-|...|.-+...|...|++++|.-.++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL----~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYL----DKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHH----HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999987654 4577777777778888889998888876 4567789999999999999999999999999
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC
Q 009663 379 LMTKTYRIEP-QIEHYGCLVDLLGRAG---RFEEALEVVKGM-KIEP 420 (529)
Q Consensus 379 ~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 420 (529)
++. -+.| ++..+..+.+.+--.| +.+-|.++|.+. ++.|
T Consensus 179 E~l---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 179 ELL---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 998 4467 5666777777654444 566788888876 6555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0006 Score=70.41 Aligned_cols=55 Identities=13% Similarity=-0.010 Sum_probs=23.6
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
.+..+..+|-+.|+.+++..+++++++..+ -++.+.|.+...|... ++++|++++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 333444444444444444444444444432 2344444444444444 444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00021 Score=66.67 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYG 394 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 394 (529)
..+.-....+...|..++|+..++.+.. ..| |..........+...|+..+|.+.++++.. ..|+ ....-
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~ 378 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHH
Confidence 3444444555667888888888888753 344 444445556677888888888888888874 3665 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+..+|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++..... ..|.-.|++
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~ 441 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRL 441 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCH
Confidence 7788888888888888888887 334478888888888888888777766543 456667777
Q ss_pred HHHHHHHHHHhhCC
Q 009663 473 DEVRKVRKMLKDRN 486 (529)
Q Consensus 473 ~~a~~~~~~~~~~~ 486 (529)
++|+..+....++.
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 88877777776664
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00015 Score=74.65 Aligned_cols=232 Identities=11% Similarity=0.092 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
+...|..|+..+...+++++|.++.+...+ | .+..|..+...+.+.++.+++.-+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh-----------------
Confidence 445666677777777777777777665433 2 223344444455555555544444 222
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChh
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSE 333 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 333 (529)
.......++..+..+...+.+.+ -+..++..+..+|-+.|+.++|..+|+++.+- |+.+.|.+...|... +.+
T Consensus 91 -~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 -DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 11222223333333333444332 23346666777777778888887777776543 455777777777777 777
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEV 412 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 412 (529)
+|++++.++.. . +...+++..+..+|.++... .| +...+..+.+....
T Consensus 167 KA~~m~~KAV~---~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~---------- 215 (906)
T PRK14720 167 KAITYLKKAIY---R---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLG---------- 215 (906)
T ss_pred HHHHHHHHHHH---H---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHh----------
Confidence 77777777654 1 44455677777777777632 33 23332222221111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 413 VKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 413 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
..+...-..++..+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 216 --~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 --HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11223345556666677888889999999999999999999888888888876
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.3e-05 Score=61.48 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE----VVWGSLLN 430 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~ 430 (529)
|..++..+. .++...+...++.+.+.++-.| .......+...+...|++++|...|+.. ...|+. .....+..
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 444444443 5677777777777776532221 1233344556677777777777777776 222332 23344556
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.+...|++++|+..++.... .+-.+..+...+.+|.+.|++++|+..|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777888888877765322 2335567777778888888888888777653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=62.29 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=54.7
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP---DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 2223 445555677788888888888888888 666666667777778888888888888888
Q ss_pred HHH
Q 009663 479 RKM 481 (529)
Q Consensus 479 ~~~ 481 (529)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-05 Score=60.56 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=87.8
Q ss_pred CCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 009663 350 IRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWG 426 (529)
Q Consensus 350 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 426 (529)
..|+ ......+...+...|++++|...++.+... .+.+...+..+...+...|++++|..+++.. ...| +...+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 4443 344556677788899999999999998753 1336788889999999999999999999887 4455 577888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.+...+...|++++|...++++.+.+|++.....
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 8888999999999999999999999997766443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=69.77 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=89.9
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 440 (529)
+.+.+++++|...|.+++ .+.| |+..|..-..+|.+.|.++.|.+-.+.. .+.|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456789999999999988 5577 6777888899999999999999888877 66774 6789999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWD 473 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 473 (529)
|++.|+++++++|++.++...|-.+-.+.+..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988888877666555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.8e-05 Score=71.47 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH 366 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~ 366 (529)
....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+ ..+-+......-...|.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK----ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHh
Confidence 3345666667778899999999988887777777788888888888899999888864 233355566666677888
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP 420 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 420 (529)
.++++.|..+.+++. ...| +..+|..|..+|.+.|+++.|+..++.++..|
T Consensus 247 k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 899999999999988 4467 46789999999999999999999999885443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-05 Score=60.47 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLAN 464 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 464 (529)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|++++|...++++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555544 11221 2334445555555555555555555555555443 334555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 009663 465 IYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 465 ~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.1e-06 Score=56.84 Aligned_cols=65 Identities=25% Similarity=0.188 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHhhC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG-KWDEVRKVRKMLKDR 485 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 485 (529)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.++...| ++++|+..+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999988654
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-05 Score=57.21 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+..+...+...|++++|..++++. ...| +...+..+...+...|++++|.+.++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888876 4444 34667777788888899999999999998888888888888888899999
Q ss_pred CHHHHHHHHHHHhhCC
Q 009663 471 KWDEVRKVRKMLKDRN 486 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~ 486 (529)
++++|...++...+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999998888876543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=74.47 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=99.9
Q ss_pred CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchH
Q 009663 41 QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY 117 (529)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 117 (529)
++.++..+-.|.....+.| .+++|+.+++... +.+...+..+...+.+. +++++|+..+++..+.. +.+....
T Consensus 82 ~~~~~~~~~~La~i~~~~g-~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~--p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAH-RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSGG--SSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcC--CCCHHHH
Confidence 4455666666777777777 8888888887765 34455666677777777 88888888888887775 5566666
Q ss_pred HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHH
Q 009663 118 PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAM 187 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~l 187 (529)
..+..++.+.|++++|..+|+++...+ +-+..++..+..++...| +.++|...|++..+ +....|+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRG-ALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 777777788888888888888887743 335677777788888888 88888888877754 444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.3e-05 Score=57.78 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLL 429 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 429 (529)
++..+...+...|++++|...|+.+.+...-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455666677778888888888888875421111 1345666888888888888888888877 33333 45677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.++...|++++|...++++.+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888899999999999999999987765444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00026 Score=57.48 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC---HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHH
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD---GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHY 393 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~ 393 (529)
|..++..+ ..++...+...++.+.. . .+.+ ....-.+...+...|++++|...|+.+... .-.|+ ....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~---~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~ 88 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAK---D-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLAR 88 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH---H-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 44444444 47888888888888864 2 2222 223334556777889999999999998865 32222 2344
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGMK-IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
..|...+...|++++|+..++... -......+....+.+.+.|++++|...|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 557788888999999999998763 2335566777788899999999999998875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=54.59 Aligned_cols=60 Identities=22% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+...+...|++++|+..|+++++..|+++.++..++.++...|++++|...++++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456678889999999999999999999999999999999999999999999988876543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=64.36 Aligned_cols=109 Identities=22% Similarity=0.197 Sum_probs=92.8
Q ss_pred CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHhcCCCCchhHH
Q 009663 387 EP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY-G--RTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 387 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.| |...|..|...|...|+.+.|..-|.+. .+.| ++..+..+..++... | ...++..++++++..+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 7999999999999999999999999988 4444 677777777774432 3 467899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccE
Q 009663 461 MLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSW 495 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (529)
.|+..+...|++.+|...|+.|.+.....+|..+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 99999999999999999999999998766665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.9e-05 Score=69.95 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=90.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG 436 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 436 (529)
-...+...|+++.|+..|+++.+. .| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345566789999999999999854 55 5778889999999999999999999998 5566 5778888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
++++|+..|+++++++|+++.+...+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888776654443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00015 Score=68.38 Aligned_cols=102 Identities=8% Similarity=0.067 Sum_probs=79.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDL 399 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 399 (529)
.....+...|++++|+..|+++. .--+-+...|..+..++...|++++|...++++.. +.| +...|..+..+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al----~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI----DLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHH
Confidence 34566778899999999999984 43333566777888889999999999999999984 356 57788889999
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM-KIEPDEVVWGSLL 429 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 429 (529)
|...|++++|...|++. .+.|+.......+
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999987 6667654444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=46.16 Aligned_cols=33 Identities=24% Similarity=0.641 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCC
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPN 113 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 113 (529)
+||.+|.+|++. |++++|.++|++|.+.|+ .||
T Consensus 2 ~~n~li~~~~~~-~~~~~a~~~~~~M~~~g~-~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKA-GRVEEALELFKEMLERGI-EPD 34 (35)
T ss_pred cHHHHHHHHHHC-CCHHHHHHHHHHHHHcCC-CCC
Confidence 688888888888 888888888888888887 776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00027 Score=59.30 Aligned_cols=96 Identities=21% Similarity=0.120 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
...+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|+..++++.+..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445667777778888888888888776 33332 3567777888888899999999999999988888888888888
Q ss_pred HHHhcCC--------------HHHHHHHHHHHhhC
Q 009663 465 IYGELGK--------------WDEVRKVRKMLKDR 485 (529)
Q Consensus 465 ~~~~~g~--------------~~~a~~~~~~~~~~ 485 (529)
++...|+ +++|.+++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 8887776 45555555555443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=60.48 Aligned_cols=94 Identities=16% Similarity=-0.046 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
....|..+...+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888899999999999887 33333 357888889999999999999999999999999888888888
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 009663 464 NIYG-------ELGKWDEVRKVRKML 482 (529)
Q Consensus 464 ~~~~-------~~g~~~~a~~~~~~~ 482 (529)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=3e-05 Score=53.47 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=45.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...|++++|++.|+++...+|++..+...++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888899999998888888888888888888899999999888877765543
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.5e-05 Score=65.55 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=78.1
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
-..+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356789999999999987 7777 56666777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 009663 477 KVRKMLKDRN 486 (529)
Q Consensus 477 ~~~~~~~~~~ 486 (529)
+.|++..+-.
T Consensus 170 ~aykKaLeld 179 (304)
T KOG0553|consen 170 EAYKKALELD 179 (304)
T ss_pred HHHHhhhccC
Confidence 9998876543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.8e-05 Score=44.88 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCC
Q 009663 78 YLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQP 112 (529)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 112 (529)
.+||.++.++++. |+++.|.++|++|.+.|+ +|
T Consensus 2 ~ty~~ll~a~~~~-g~~~~a~~~~~~M~~~gv-~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKA-GDPDAALQLFDEMKEQGV-KP 34 (34)
T ss_pred cHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCC-CC
Confidence 4677777777776 777777777777777665 54
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.2e-05 Score=44.95 Aligned_cols=33 Identities=30% Similarity=0.719 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD 353 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~ 353 (529)
+|+++|.+|++.|++++|.++|++|.+ .|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~---~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE---RGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCC
Confidence 678888888888888888888888877 787776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0014 Score=59.72 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCL 396 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 396 (529)
.+|..++...-+.+..+.|..+|.++.+ ...+........+++..+ ..++.+.|..+|+...+.+ ..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKF--PSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 3678888888888889999999999974 122334444444444333 3577888999999999764 5577888999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEPDE----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
++.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+..|++..+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999987 333333 5899999999999999999999999999888644333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.02 Score=52.82 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI 434 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 434 (529)
.+.+..+.-|...|+...|.++-.+. + .|+...|...+.+++..++|++-.++... +-.+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677788888887776655 3 48889999999999999999998887654 2345778889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 435 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.|+..+|..+..++. +..-+..|.+.|++.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888721 134557789999999998775444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.002 Score=52.11 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHH
Q 009663 350 IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP---DEVVW 425 (529)
Q Consensus 350 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 425 (529)
..|+...-..|..+....|++.+|...|++.... -+..|......+.++....+++.+|...++.+ ..+| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666677888888889999999988888742 23446778888888888889999988888876 2223 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
-.+...+...|++.+|...|+.+....| ++......+..+.++|+.+++..-+..+.+.-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4567778888999999999999988887 66666667777888888888877666655443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.9e-05 Score=50.78 Aligned_cols=61 Identities=28% Similarity=0.368 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 577788888889999999999999999999999764
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.2e-05 Score=54.10 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPD-EVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..+++..+..|. ......+..++...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 555566666665554311111233344455566666666666666655322222 2333334455566666666666655
Q ss_pred H
Q 009663 447 K 447 (529)
Q Consensus 447 ~ 447 (529)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.7e-05 Score=51.76 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..+.+.+++++|.+++++++..+|+++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4677888999999999999999999999999999999999999999999988886654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.032 Score=51.94 Aligned_cols=404 Identities=11% Similarity=0.087 Sum_probs=223.5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCCh---hHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009663 30 KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNT---YLYTAMITAYASQPAHASSAFSLYRDMVR 106 (529)
Q Consensus 30 ~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 106 (529)
.++.+.+.+. |.++..|..||+-+..++ ..++.+++++++..|.+ .+|...+++-... .++.....+|.+.+.
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~-s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~-~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQE-SMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR-KDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhh-hHHHHHHHHHHhcCCCccccHHHHHHhcchhhh-hhHHHHHHHHHHHHh
Confidence 3555555433 668899999999999999 99999999999987654 4788888877777 899999999999988
Q ss_pred CCCCCCCcchHHHHHHhCccCCCch--H----HHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---hcC-----CCHHHHH
Q 009663 107 RGQPQPNQFIYPHVLKSCPDVLESR--G----TKMVHTQIVK-SGFEQY-PVVETALVNSYS---RSG-----NDIGIAR 170 (529)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~--~----a~~~~~~~~~-~g~~~~-~~~~~~l~~~~~---~~g-----~~~~~A~ 170 (529)
... +...|..-+....+....- + .-+.++-... .++.|- ...|+..+..+- ..| .+++...
T Consensus 105 k~l---~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 105 KSL---NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhc---cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 643 4555555555433322111 1 1233333332 234332 234444443321 112 0345555
Q ss_pred HHHhhCCC-C---------ChhhHHHHHHHHHh-------cCCHHHHHHHHhhCCC-------C---Chhh---------
Q 009663 171 KLFDEMSD-R---------NVVSWTAMISGYTR-------VGDIKNAASLFDSMPD-------R---DVPA--------- 214 (529)
Q Consensus 171 ~~~~~~~~-~---------~~~~~~~ll~~~~~-------~g~~~~A~~~~~~~~~-------~---~~~~--------- 214 (529)
+.+.++.. | |-..|..=++-... .--+-.|.+.++++.. . +..+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 66666654 1 11222211111110 0012233333333221 0 1111
Q ss_pred --HHHHHHHHHhCC-----C-h-hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc
Q 009663 215 --WNSVIAGCTQNG-----L-F-SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS 285 (529)
Q Consensus 215 --~~~li~~~~~~g-----~-~-~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (529)
|...|.--...| + . ....-++++...- +.-....|.---.-+...++-+.|+..... |++..+
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y----~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~sp 333 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY----FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSP 333 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCC
Confidence 222222111110 0 0 1111112222110 111122222222222333444444443322 222222
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcC---------------------------------CCChhHHHHHHHHHHHcCCh
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNS---------------------------------KKRLTSWNSMINSFALHGQS 332 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------------------------~~~~~~~~~li~~~~~~~~~ 332 (529)
...-.+...|.-.++.+.....|+... ..-...|...+....+..-.
T Consensus 334 sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 334 SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred chheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhH
Confidence 211222333333333333333332110 01122677788888888888
Q ss_pred hHHHHHHHHHhhcccCC-CCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHH
Q 009663 333 ENSICVFEEMMRCQDHN-IRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE-HYGCLVDLLGRAGRFEEAL 410 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 410 (529)
+.|..+|-+..+ .+ +.++...+++++..++ .|+...|..+|+.-... -||.. --...+..+.+.|+-+.|.
T Consensus 414 ~aaR~~F~k~rk---~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 414 EAARKLFIKLRK---EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HHHHHHHHHHhc---cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHH
Confidence 999999999987 77 6788888999998777 48889999999987654 34433 3355667778899999999
Q ss_pred HHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 411 EVVKGM--KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 411 ~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+|+.. .+..+ ..+|..++..-..-|+...+..+-+++.+.-|..
T Consensus 487 aLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 487 ALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 999965 23333 6789999999899999999999999998888864
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00043 Score=55.46 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=75.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWD 473 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 473 (529)
...-+-..|++++|..+|+-+ -.. -+..-|..|..++...+++++|+..|..+..++++||......+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999877 223 366677888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 009663 474 EVRKVRKMLKDR 485 (529)
Q Consensus 474 ~a~~~~~~~~~~ 485 (529)
.|...|+...++
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999888773
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0016 Score=64.37 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHHcC-----ChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCC--------CcHHHHHHHHH
Q 009663 313 KKRLTSWNSMINSFALHG-----QSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHG--------GLVEQGRAYFK 378 (529)
Q Consensus 313 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~ 378 (529)
..+...|...+.+..... +...|..+|+++.+ ..|+. ..+..+..++... .+...+.+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345566666666544322 25577777777754 45543 2333322222111 12233333333
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 379 LMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
+.........++..|..+.......|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32221012224456666666666667777777777776 55677777777777777777777777777777777776554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.015 Score=53.26 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-----CCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHh-cCCCCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNI-----RPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKT-YRIEPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~- 389 (529)
.+..+...+.+.|++++|.++|++... ... +.+.. .|...+-++...|++..|...+++.... .++..+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~---~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAK---KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 445567778888888888888888765 222 22222 2333444566678999999999987633 122222
Q ss_pred -hhHHHHHHHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHHH
Q 009663 390 -IEHYGCLVDLLGR--AGRFEEALEVVKGMKIEPDEVVWGSLL 429 (529)
Q Consensus 390 -~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~ 429 (529)
......|+.+|-. ...+++|..-|+.+. +.|.+--..|+
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 3456677777754 345777888887775 45555444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.036 Score=51.72 Aligned_cols=441 Identities=13% Similarity=0.061 Sum_probs=220.1
Q ss_pred HHHHccCcchHHHHHHHHHHhCCCC----c-hhHHHHHHHHHhhcCCChhHHHHHhhcCCC--CChhHHHHHHHHH--hc
Q 009663 19 ILERCNHINHLKQLQSFLTTLGQSQ----T-NFYAFKLVRFCTLKLSNLTYARFIFDHLTT--PNTYLYTAMITAY--AS 89 (529)
Q Consensus 19 ~l~~~~~~~~~~~i~~~~~~~~~~~----~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~--~~ 89 (529)
+|.--++..+++.|+..+.+..-.. . ...-+.+|++|-.. +++.....+....+ | ...|-.+..++ .+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4445567777877777776542211 1 23556788888765 56766666655542 3 23344443332 24
Q ss_pred CCCChHHHHHHHHHHHHC--CCCCC-----------CcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC----CchhHH
Q 009663 90 QPAHASSAFSLYRDMVRR--GQPQP-----------NQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE----QYPVVE 152 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~--~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~ 152 (529)
. +.+.+|++.+...... +..+| |-.-=+..+..+...|.+.+++.+++++...=.+ -+..+|
T Consensus 92 ~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 Q-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred h-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 5 8888998888777654 22011 1111234556677888888888888877665333 577778
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC--CChhH
Q 009663 153 TALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQN--GLFSD 230 (529)
Q Consensus 153 ~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~ 230 (529)
+.++-.+.++- -.+ +-+.+...=..-|.-++..|.+.=..-++.. +++. .|.......++....-. .+..-
T Consensus 171 d~~vlmlsrSY-fLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 171 DRAVLMLSRSY-FLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHHhHHH-HHH----HHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccH
Confidence 77766665543 111 1111111111123333333333211111100 0000 01111111111111111 01111
Q ss_pred HHHHHHHhhhcccCCCCCCHHH-HHHHHHHhhccCCchHHHHHHHHHHHhCCCC----CccHHHHHHHHHHhCCCHHHHH
Q 009663 231 AISFFRRMGMEVSDNIRPNQVT-LVCALSAIGHTGMLQLGKVIHGYVYRNGLDL----DSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 231 A~~~~~~m~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
-++++..-... -+.|+... ...+.....+ +.+++..+-+.+....+.+ -..++..++....+.++...|.
T Consensus 244 ~mq~l~~We~~---yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 244 LMQILENWENF---YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred HHHHHHHHHhh---ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11222221111 34444322 2223333322 3344433333333221110 1234555666666777777776
Q ss_pred HHHhhcC--CCChh-------HHHHHHHHHH----HcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHH---HHhCCC
Q 009663 306 RAFDRNS--KKRLT-------SWNSMINSFA----LHGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLN---ACTHGG 368 (529)
Q Consensus 306 ~~~~~~~--~~~~~-------~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~---~~~~~~ 368 (529)
+.+.-+. +|+.. +-..+-+..+ ..-+...-+.+|+.... .. .|.. ....++. -+-+.|
T Consensus 319 q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs---~D--iDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 319 QYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS---YD--IDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh---hc--ccHHHHHHHHHHHHHHHHhcC
Confidence 6665332 22221 1111112222 11122333445555533 22 2221 1222222 234445
Q ss_pred c-HHHHHHHHHHhHHhcCCCC-ChhHHHHH----HHHHHhcCC---hHHH---HHHHHhCCCCC----CHHHHHHHHHH-
Q 009663 369 L-VEQGRAYFKLMTKTYRIEP-QIEHYGCL----VDLLGRAGR---FEEA---LEVVKGMKIEP----DEVVWGSLLNG- 431 (529)
Q Consensus 369 ~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l----~~~~~~~g~---~~~A---~~~~~~~~~~p----~~~~~~~l~~~- 431 (529)
. -++|..+++.+.+ +.| |..+-+.+ =..|.+.=. +.+- ...+++.|+.| +...-|.+.++
T Consensus 394 ~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 4 7788888888873 344 34333332 223333222 2222 23334446655 45677778776
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 432 -CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 432 -~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+..+|++.++.-.-.-+.++.| ++.++..++.++....+++||+.++.++..
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 7789999999999999999999 999999999999999999999999988754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.8e-05 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.640 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p 352 (529)
+|+.++.+|++.|+++.|.++|++|.+ .|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~---~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE---QGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 555666666666666666666666655 55554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0014 Score=59.87 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=90.9
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH--HHhCCCcHHHHHHHHHHhHHhcCCCCChhHH---HHH--
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN--ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY---GCL-- 396 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~l-- 396 (529)
.++...|+.++|...-....+ +.++ ..+...++ ++...++.+.+...|++.. .+.|+-..- ...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk-----ld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK-----LDAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh-----cccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHH
Confidence 455666777777766655543 1111 11222222 2334566677777776665 334432111 111
Q ss_pred --------HHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 397 --------VDLLGRAGRFEEALEVVKGM-KIEP-----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 397 --------~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.+.+++++|.-...+..-
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 11234667777777777766 4444 344555555566677777777777777777777666667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 463 ANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+.++...++|++|.+-+++..+...
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777777777777777765543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00056 Score=50.48 Aligned_cols=92 Identities=24% Similarity=0.322 Sum_probs=57.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY 435 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 435 (529)
.+...+...|++++|..+++.+.+. .| +...+..+...+...|++++|.+.++.. ...| +..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3444555566667777766666532 23 3355566666666677777777777665 3233 335666666777777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 009663 436 GRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p 453 (529)
|+++.|...+.++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777776655
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0016 Score=54.68 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYG 394 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 394 (529)
.+..+...+...|++++|...|++..+ ....+. ...+..+...+.+.|++++|...+++..+. .| +...+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALK---LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 566666677777777777777777754 322221 245566666667777777777777776632 34 345555
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 395 CLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+..+|...|+...+..-++.. ...+++|.++++++.+.+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 5566666666555444322211 112677888888888888865
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.02 Score=50.76 Aligned_cols=77 Identities=12% Similarity=-0.001 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHH----HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCcc
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT----LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSF 286 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 286 (529)
+...+-.....+...|++++|.+.|+.+... .|+... ...+..++.+.++++.|...+++.++..+.....
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 4444444556667788888888888888743 343321 2345566777888888888888877765543333
Q ss_pred HHHHHH
Q 009663 287 ISNALI 292 (529)
Q Consensus 287 ~~~~l~ 292 (529)
-+....
T Consensus 106 ~~a~Y~ 111 (243)
T PRK10866 106 DYVLYM 111 (243)
T ss_pred HHHHHH
Confidence 333333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.085 Score=53.58 Aligned_cols=191 Identities=11% Similarity=0.086 Sum_probs=130.7
Q ss_pred hhHHHHHHHHH--hhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHH
Q 009663 45 NFYAFKLVRFC--TLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPH 119 (529)
Q Consensus 45 ~~~~~~ll~~~--~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 119 (529)
...|...+.++ .|.| +.++|..+++... ..|..+...+...|... ++.++|..+|+..... .|+..-...
T Consensus 41 n~~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~---~P~eell~~ 115 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQK---YPSEELLYH 115 (932)
T ss_pred CcHHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhh---CCcHHHHHH
Confidence 34455555555 3666 8899999998875 35777888888888888 9999999999999887 566888888
Q ss_pred HHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC---------HHHHHHHHhhCCCCC--hhh---HH
Q 009663 120 VLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND---------IGIARKLFDEMSDRN--VVS---WT 185 (529)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---------~~~A~~~~~~~~~~~--~~~---~~ 185 (529)
+..+|.+.+++.+-.++--++-+. .+.....+-++++...+.-.. ...|.+.++.+.+.+ ..+ ..
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 899999999888777666666553 444666666777777665322 233555556555432 111 12
Q ss_pred HHHHHHHhcCCHHHHHHHHhh-----CCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhc
Q 009663 186 AMISGYTRVGDIKNAASLFDS-----MPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGME 241 (529)
Q Consensus 186 ~ll~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (529)
.....+-..|++++|..++.. ....+...-+.-+..+...++|.+..++-.++...
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 223344567889999998832 22334444555667777888888888887777654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00055 Score=55.31 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=113.3
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 009663 379 LMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--K-IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN- 454 (529)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 454 (529)
+..+...+.|+...--.|..+..+.|+..+|...|++. | +.-|....-.+..+....+++..|...++++-+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33333455788888888999999999999999999988 4 4458888888999999999999999999999997776
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHHhc
Q 009663 455 -NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMVAL 528 (529)
Q Consensus 455 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
++.....+++.|...|++.+|...|+...+.-..+...+.+.+ ....+.+......+..++.+++.+-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e------~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAE------MLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH------HHHHhcchhHHHHHHHHHHHHHHhc
Confidence 6777888899999999999999999999887666555544421 2233334556677888888877654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0014 Score=59.89 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCH
Q 009663 356 TFISLLNACTHG-GLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGMK---I-----EPDE 422 (529)
Q Consensus 356 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~ 422 (529)
.+..+...|... |+++.|.+.|++...-+..... ..++..+...+.+.|++++|.++|++.. . +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999887653221221 4566778888999999999999998871 1 1112
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHhc--CCHHHHHHHHHHH
Q 009663 423 V-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN-----NGGYGIMLANIYGEL--GKWDEVRKVRKML 482 (529)
Q Consensus 423 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 482 (529)
. .+-..+-++...||+..|...+++....+|. ...+...|+.++... ..+++++.-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1 2233344566789999999999999988764 233455566665432 4566666666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.078 Score=52.24 Aligned_cols=185 Identities=12% Similarity=0.065 Sum_probs=103.6
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHhcCCHHHHHH
Q 009663 128 LESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR-----NVVSWTAMISGYTRVGDIKNAAS 202 (529)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~ 202 (529)
|.+++|.+++-+|-++++ .+..+.+.| |+-...++++.-... -..+|+.+...+.....|++|.+
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777666644432 345556666 666666666554321 12456677777777777777777
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC
Q 009663 203 LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD 282 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 282 (529)
.+..-.. -...+.++.+..++++-+.+-+. ++.+....-.+...+.+.|.-++|.+.|-+ .+.
T Consensus 818 yY~~~~~-----~e~~~ecly~le~f~~LE~la~~--------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~- 880 (1189)
T KOG2041|consen 818 YYSYCGD-----TENQIECLYRLELFGELEVLART--------LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL- 880 (1189)
T ss_pred HHHhccc-----hHhHHHHHHHHHhhhhHHHHHHh--------cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-
Confidence 7665442 12234555555555554444333 344445555666677777777777665532 111
Q ss_pred CCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHH--------------HHHHHHHHcCChhHHHHHHHHHhh
Q 009663 283 LDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWN--------------SMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
| ...++.|...++|.+|.++-++..-|.+.+.- --|..+.+.|++-.|-+++.+|.+
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1 23455666777777777777665544433211 123445566666666666666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.015 Score=56.47 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH---------
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVV--------- 424 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~--------- 424 (529)
.+...+..-+.+...+.-|.++|..+-. ...+++.....++|++|..+-+.. .+.||...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3344444444455556666666666531 123566666777777777777766 33333211
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 425 --WGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 425 --~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
|.-.-.+|.+.|+..+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11122345556666677776666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.06 Score=49.30 Aligned_cols=283 Identities=16% Similarity=0.155 Sum_probs=190.4
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhhCC---CCChhhHHHHHH--HHHhCCChhHHHHHHHHhhhcccCCCCCCHHH--H
Q 009663 183 SWTAMISGYTR--VGDIKNAASLFDSMP---DRDVPAWNSVIA--GCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT--L 253 (529)
Q Consensus 183 ~~~~ll~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~--~ 253 (529)
-|..|-.++.. .||-..|.++-.+-. ..|....-.++. +-.-.|+++.|.+-|+.|.. .|.... +
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhH
Confidence 35566555543 577777777766543 345555544543 44557999999999999972 233222 2
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc-----CCCChh--HHHHHHHHH
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN-----SKKRLT--SWNSMINSF 326 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~--~~~~li~~~ 326 (529)
..|.-...+.|..+.|..+-+.....-+. -.......+...+..|+|+.|+++.+.- .++++. .--.|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 22222345778888888888877765432 3456778889999999999999999753 344544 333344333
Q ss_pred HH---cCChhHHHHHHHHHhhcccCCCCCCHHH-HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 327 AL---HGQSENSICVFEEMMRCQDHNIRPDGVT-FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 327 ~~---~~~~~~a~~~~~~m~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
.. .-+...|...-.+. .++.|+... -.....++.+.|+..++-.+++.+-+. .|.+..+... .+.+
T Consensus 237 A~s~ldadp~~Ar~~A~~a-----~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar 306 (531)
T COG3898 237 AMSLLDADPASARDDALEA-----NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRAR 306 (531)
T ss_pred HHHHhcCChHHHHHHHHHH-----hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhc
Confidence 22 23445555555544 778887654 334557788999999999999999854 6777655333 3345
Q ss_pred cCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-cCCHHHHH
Q 009663 403 AGRFEEALEVVKGM----KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE-LGKWDEVR 476 (529)
Q Consensus 403 ~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~ 476 (529)
.|+. ++.-+++. ..+| +..+...+..+-...|++..|..--+.+.+..| ..++|..|+++-.. .|+-.++.
T Consensus 307 ~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 307 SGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred CCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHH
Confidence 5553 33333322 3445 567777888888899999999999999999999 77888888887654 49999999
Q ss_pred HHHHHHhhC
Q 009663 477 KVRKMLKDR 485 (529)
Q Consensus 477 ~~~~~~~~~ 485 (529)
..+-+..+.
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 998777654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00099 Score=53.16 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 431 (529)
.....+...+...|++++|.++|+.+. -+.| +...|..|.-++-..|++++|+..|... .+.| |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 334455556677899999999999987 3466 5777888999999999999999999987 4455 67888888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 009663 432 CKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+...|+.+.|.+.|+.++..-
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999988854
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.017 Score=51.18 Aligned_cols=178 Identities=10% Similarity=0.043 Sum_probs=95.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchH---HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 009663 84 ITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIY---PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYS 160 (529)
Q Consensus 84 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (529)
...+... |++++|++.|+.+.... +-+.... ..+..++.+.++++.|...+++.++..+.....-+...+.+.+
T Consensus 39 A~~~~~~-g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 39 AQQKLQD-GNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3334456 88888888888888764 2222222 3455667788888888888888888754333333333333332
Q ss_pred h--cC--------------CCHH---HHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 009663 161 R--SG--------------NDIG---IARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAG 221 (529)
Q Consensus 161 ~--~g--------------~~~~---~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 221 (529)
. .+ +|.. .|.+.|+.+ +.-|=...-..+|...+..+...=...--.+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-----------i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-----------VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-----------HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 0122 222333332 2222222333344333333322111112245566
Q ss_pred HHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHH
Q 009663 222 CTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYV 276 (529)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (529)
|.+.|.+..|+.-++.+... -++.+........+..++...|..++|......+
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 88888888888888887753 1233334445556666777777777666655443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0031 Score=62.39 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=100.9
Q ss_pred CCCCCCHHHHHHHHHHHhC-----CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHH
Q 009663 348 HNIRPDGVTFISLLNACTH-----GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRA--------GRFEEALEVV 413 (529)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 413 (529)
.+.+.+...|...+++... .++.+.|..+|+++.+ ..|+ ...|..+..+|... +++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3455677888888877433 2347799999999984 4786 45555554444332 1234445555
Q ss_pred HhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 414 KGM----KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 414 ~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
++. ....++..+..+.......|++++|...++++.+++| +...|..++.++...|+.++|.+.+++....+..
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 443 1334567788777777778999999999999999999 6789999999999999999999999998777654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.012 Score=54.01 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGR 402 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 402 (529)
+-..+.|++..|.+.|.+.+.+-+....|+...|.....+..+.|+..+|+.-.+... .+.|. ...|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3455677888888888877654445555666667766777777788888877777766 34443 3444444556666
Q ss_pred cCChHHHHHHHHhC
Q 009663 403 AGRFEEALEVVKGM 416 (529)
Q Consensus 403 ~g~~~~A~~~~~~~ 416 (529)
.++|++|.+-++..
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 77778877777765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0019 Score=49.71 Aligned_cols=54 Identities=24% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPN---NGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.+...+...|++++|..++++.....|+ +......++.++...|+.++|++.+-
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555555555555555544444 33344444444455555555554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00016 Score=49.84 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.|++++|..+|+.+... .| +...+..+..+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555433 23 3444444555555555555555555554
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=41.07 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHCC
Q 009663 79 LYTAMITAYASQPAHASSAFSLYRDMVRRG 108 (529)
Q Consensus 79 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 108 (529)
+||.++++|++. |++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~-~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKM-GQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHcc-chHHHHHHHHHHHhHCc
Confidence 677777777777 77777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=60.01 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR-AGRFEEALEVVKGM--KIEPDEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 431 (529)
.+|..+++...+.+..+.|..+|.++.+.. ..+..+|-.....-.. .++.+.|..+|+.. .+..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 468888999989999999999999998432 2345666666555334 56677799999998 455678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNG---GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...++.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998665443 58888888888999999999999888654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=59.36 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLAN 464 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 464 (529)
|..-+..+.+.|++++|...|+.+ ...|+ ...+.-+..+|...|++++|...|+++.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334455666666666555 22332 2344455666666667777777777666655553 344444566
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 009663 465 IYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 465 ~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++...|++++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666777777776666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00025 Score=49.01 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG-RTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 453 (529)
++..|..+...+...|++++|+..|++. .+.| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777777888888888888888776 4455 4667778888888888 68889999988888877
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00097 Score=49.24 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCC--------CchHHHHHHHHHHHhCCCCchhH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL--------ESRGTKMVHTQIVKSGFEQYPVV 151 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 151 (529)
-...|..+... +++.....+|+.+++.|+.-|+..+|+.++.+.++.. ..-..+.++++|+..+++|+..+
T Consensus 28 ~i~~I~~~~~~-~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFEN-EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhh-cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34567777778 9999999999999999976899999999999865442 23346789999999999999999
Q ss_pred HHHHHHHHHhc
Q 009663 152 ETALVNSYSRS 162 (529)
Q Consensus 152 ~~~l~~~~~~~ 162 (529)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0021 Score=60.94 Aligned_cols=106 Identities=10% Similarity=0.110 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSKK------RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFI 358 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~ 358 (529)
......+++.+....+.+.+..++.+.... ...|..++++.|...|..+.++.++..=.. .|+-||..+++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~---yGiF~D~~s~n 142 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ---YGIFPDNFSFN 142 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh---cccCCChhhHH
Confidence 333444444444444555555555443321 112445666666666666666666665554 66667777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
.||..+.+.|++..|.++...|..+ +...+..++.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 7777777777776666666666544 3333444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.1 Score=47.81 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=178.0
Q ss_pred hcCCCHHHHHHHHhhCCC---CChhhHHHHHHH--HHhcCCHHHHHHHHhhCCCC-Chh--hHHHHHHHHHhCCChhHHH
Q 009663 161 RSGNDIGIARKLFDEMSD---RNVVSWTAMISG--YTRVGDIKNAASLFDSMPDR-DVP--AWNSVIAGCTQNGLFSDAI 232 (529)
Q Consensus 161 ~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~g~~~~A~ 232 (529)
-.| |-..|.+.-.+..+ .|......++.+ -.-.|+.+.|.+-|+.|... ... -...|.-.-.+.|..+.|.
T Consensus 96 gAG-da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAG-DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccC-chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 346 77777777665542 566666566544 34579999999999999752 221 2344445556789999998
Q ss_pred HHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCC-CCCcc--HHHHHHHHHH---hCCCHHHHH
Q 009663 233 SFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL-DLDSF--ISNALIDMYG---KCGSLKEAR 305 (529)
Q Consensus 233 ~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~l~~~~~---~~g~~~~A~ 305 (529)
.+-+..- +.-|. .......+...+..|+++.|+++++.-....+ .++.. .-..|+.+-. -..+...|.
T Consensus 175 ~yAe~Aa-----~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 175 HYAERAA-----EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHH-----hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8888775 33443 45677888999999999999999987765433 22221 1111222111 122344455
Q ss_pred HHHhhcC--CCChh-HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 306 RAFDRNS--KKRLT-SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 306 ~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
..-.+.. ++|.+ .-..-..++.+.|+..++-.+++.+=+ ....|+ .... ....+.|+. +..-+++..+
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~--ia~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPD--IALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChH--HHHH--HHHhcCCCc--HHHHHHHHHH
Confidence 4443333 34544 444456789999999999999999855 444444 3322 234455543 3444444433
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 009663 383 TYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGC-KIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 383 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 450 (529)
--.++| +......+..+-...|++..|..--+.. ...|....|..|.+.- ...|+-.++...+.+.++
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 335566 4677777888888999998887777666 5678888888887764 455999999999998887
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=62.39 Aligned_cols=65 Identities=12% Similarity=-0.104 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG---YGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...++.+..+|...|++++|+..|+++++++|++.. +|+.++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4666777777777777777777777777777776663 3777777777777777777777777664
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0036 Score=46.34 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCHHHHHHHHHHHhCCC--------cHHHHHHHHHHhHHhcCCCC
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDGVTFISLLNACTHGG--------LVEQGRAYFKLMTKTYRIEP 388 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~p 388 (529)
+-...|..+...+++...-.+|+.+++ .|+ .|+..+|+.++.+.++.. +......+|+.+... +++|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR---N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP 102 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR---NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKP 102 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh---cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCC
Confidence 344456666677999999999999988 898 899999999998876532 345677788888866 8889
Q ss_pred ChhHHHHHHHHHHh
Q 009663 389 QIEHYGCLVDLLGR 402 (529)
Q Consensus 389 ~~~~~~~l~~~~~~ 402 (529)
+..+|+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 88899888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=60.37 Aligned_cols=129 Identities=17% Similarity=0.060 Sum_probs=90.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHh---HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLM---TKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-------K-IEPDEV 423 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 423 (529)
.|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..|..++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566678888888776542 23334333 3557788888899999999998888754 2 122455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEID------PNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+...|...|.-..+++.|+.++.+-+.+. ......++.|+.+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 67778888888888999998887765522 23566788889999999999999887766543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0009 Score=46.74 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=53.0
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
-..|.+.+++++|.++++.+ ...| +...|.....++...|++++|.+.++++.+..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35678889999999999888 5555 566777788889999999999999999999999776655443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00026 Score=39.64 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
+|+.++++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 455555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00021 Score=40.83 Aligned_cols=33 Identities=39% Similarity=0.524 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
+|+++++++|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00057 Score=42.00 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.++..+..+|.+.|++++|+++|+++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999999888764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0069 Score=50.56 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.|..+...+...|++++|+..|++... ....| ...++..+...+...|++++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~---l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMR---LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555556666666666666543 21111 12345555555555666666666665555
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=60.42 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHCCCC-CCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009663 80 YTAMITAYASQPAHASSAFSLYRDMVRRGQP-QPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNS 158 (529)
Q Consensus 80 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (529)
...++..+... .+.+.+..++-+....... ..-..|..++++.|...|..+.+..++..=...|+-||..++|.||+.
T Consensus 69 ld~fvn~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 69 LDIFVNNVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHhhcCCH-hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33344444333 4444444444444433100 122333445555555555555555555555555555555555555555
Q ss_pred HHhcCCCHHHHHHHHhhCC
Q 009663 159 YSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 159 ~~~~g~~~~~A~~~~~~~~ 177 (529)
+.+.| ++..|.++...|.
T Consensus 148 fl~~~-~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 148 FLKKG-NYKSAAKVATEMM 165 (429)
T ss_pred Hhhcc-cHHHHHHHHHHHH
Confidence 55555 5555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.14 Score=50.65 Aligned_cols=193 Identities=10% Similarity=0.065 Sum_probs=123.2
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHHcCChhHHH
Q 009663 262 HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKR-----LTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~ 336 (529)
--|.+++|+++|-.+-..+. .+..+.+.|+|-...++++.-...+ ...|+.+...++....|++|.
T Consensus 746 ~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888876655433 5677888899988888887644321 237888888888888899998
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
++|..-.. -...+.++.+...+++-+.+-..+ +.+....-.+.+++.+.|.-++|.+.+-+.
T Consensus 817 ~yY~~~~~------------~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 817 KYYSYCGD------------TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHhccc------------hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 88877532 123455565555555554444333 335666777888889999999998888777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------CCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP------------NNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+ .|. +-+..|...+++.+|.++.++..-.+. .+..... -+..+.++|+.-+|.+++.+|-+
T Consensus 879 s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~e-aIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 879 S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHME-AIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHH-HHHHhhhcccchhHHHHHHHHhH
Confidence 5 222 234566677777777766554321000 0111111 22446677887777788777765
Q ss_pred CCCc
Q 009663 485 RNAY 488 (529)
Q Consensus 485 ~~~~ 488 (529)
+.-+
T Consensus 952 ~e~~ 955 (1189)
T KOG2041|consen 952 REQE 955 (1189)
T ss_pred HHhh
Confidence 5433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.077 Score=45.76 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=90.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDM 294 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (529)
+-.....+...|++++|.+.|+.+.... ++-+--......++.++.+.|+++.|...++..++.-+.....-+...+.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3344556677788888888888876431 111112234455666777778888888888777766443222222222222
Q ss_pred HHhCCCHHHHHHHHhhcCCCCh-------hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC
Q 009663 295 YGKCGSLKEARRAFDRNSKKRL-------TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367 (529)
Q Consensus 295 ~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (529)
.+.-....... ....|. ..+..++.-|=...-..+|...+..+.. . -...-..+..-|.+.
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~---~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN---R----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH---H----HHHHHHHHHHHHHCT
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHc
Confidence 22111111110 111111 1344455555555555555554444432 0 011112345667788
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 409 (529)
|.+..|..-++.+.+.+.-.+ .......++.+|.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 888888888888887642222 134556677777777776644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.006 Score=54.54 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVW 425 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~ 425 (529)
..|...+....+.|++++|...|+.+.+.+ |+ +..+.-+..+|...|++++|...|+.+ ...|+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555555566789999999999998763 43 356777888999999999999999888 32332 5556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
..++..+...|+.++|...|+++++..|++..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 66677788999999999999999999997654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.025 Score=48.72 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC----CCCChhHHH
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR----IEPQIEHYG 394 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~ 394 (529)
.++++..+.-.+.+.-....+.+.++ ...+.+......|.+.-.+.|+.+.|..+|++..+..+ +.-+..+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~---~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK---YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH---hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34455555556666666666666654 33334455556666666666777777777765544311 111222222
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 395 CLVDLLGRAGRFEEALEVVKGMK--IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.....|.-++++.+|...+.++. .+.++...|.-.-+..-.|+...|++..+.++...|.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33334445556666666666551 1223444444444444456666666666666666664
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0039 Score=52.31 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=74.2
Q ss_pred HHHhhcC--CCCChhHHHHHHHHHhcC----CCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCC-----------
Q 009663 66 RFIFDHL--TTPNTYLYTAMITAYASQ----PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL----------- 128 (529)
Q Consensus 66 ~~~~~~~--~~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~----------- 128 (529)
...|+.. ...+-.+|..++..+.+. +|..+-....+..|.+.|+ ..|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv-~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV-EKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC-cccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 3455554 356777777777777643 2677777778888888888 888999999988765422
Q ss_pred -----CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 009663 129 -----ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG 163 (529)
Q Consensus 129 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 163 (529)
+.+-|.+++++|...|+-||..++..|++.+.+.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 34457899999999999999999999999998776
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.11 Score=48.53 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=98.4
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCC---C----hhHHHHHHHHHHH---cCChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 290 ALIDMYGKCGSLKEARRAFDRNSKK---R----LTSWNSMINSFAL---HGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 290 ~l~~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
.++-+|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+.. ....++..+|..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~---~~~~~~~d~~gL 222 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE---SDENPDPDTLGL 222 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---ccCCCChHHHHH
Confidence 3444677777777777777776643 1 1122233445555 7888888888888655 556677778777
Q ss_pred HHHHHhC---------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-h---HHHHHHH---Hh-C------
Q 009663 360 LLNACTH---------GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR-F---EEALEVV---KG-M------ 416 (529)
Q Consensus 360 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~---~~A~~~~---~~-~------ 416 (529)
+.+.|-. ....++|+..|.+.- .+.|+...--.++..+...|. . .+..++- .. .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7666532 234677888887655 445553322222222333332 1 1222222 11 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.-..+-..+.+++.++.-.|+++.|.+.++++.+..|..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 123466777889999999999999999999999987743
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0013 Score=46.62 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEI----DPN---NGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
.+++.+...|...|++++|+..|++++++ +++ ...++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777788888888888888877763 222 245667778888888888888888877643
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.02 Score=44.08 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=50.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhcccCCCCCC--HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC--CccHHHHHHH
Q 009663 218 VIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN--QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL--DSFISNALID 293 (529)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 293 (529)
+..++-..|+.++|+.+|++.... |.... ...+..+.+++...|++++|..+++......+.. +......+.-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 345566677777777777777654 54443 2234445556667777777777777666543221 1122222334
Q ss_pred HHHhCCCHHHHHHHHhh
Q 009663 294 MYGKCGSLKEARRAFDR 310 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~ 310 (529)
++...|+.++|.+.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 55566666666666544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.17 Score=49.55 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 302 KEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 302 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
+.+.++-.++...+..+...+...+.+...+.-|-++|..|-. ...++......++|++|..+-+...
T Consensus 733 d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 733 DMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------------HHHHhhheeecccchHhHhhhhhCc
Confidence 3333333444444444555555555555666666667666632 2345555666677777766666554
Q ss_pred HhcCCCCChh-----------HHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 382 KTYRIEPQIE-----------HYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 382 ~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.+.|+.. -|.---++|.++|+-.+|.++++++
T Consensus 801 ---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 801 ---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 2233321 1222334677777778888887776
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.013 Score=49.35 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=61.3
Q ss_pred CCCChhHHHHHHHHHHHc-----CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC----------------cH
Q 009663 312 SKKRLTSWNSMINSFALH-----GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG----------------LV 370 (529)
Q Consensus 312 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~----------------~~ 370 (529)
...+..+|..++..|.+. |..+=....+..|.+ .|+.-|..+|+.|+..+=+.. +.
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e---fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq 119 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE---FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQ 119 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH---cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHH
Confidence 345566677777666643 566666677777877 999999999999998876521 34
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 009663 371 EQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR 405 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (529)
+-|++++++|.. +|+.||..++..|++.+++.+.
T Consensus 120 ~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 120 ECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 556667777753 3777777777777666655553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.032 Score=48.11 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=83.4
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC--C----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHh
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKK--R----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACT 365 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~ 365 (529)
...+...|++.+|...|+.+... + ....-.++.++.+.|+++.|...+++..+. ..-.|. ..+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~-~~~A~Y~~g~~ 88 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK-ADYALYMLGLS 88 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc-hhhHHHHHHHH
Confidence 33445556666666666555421 1 114445566666677777777777766541 111121 11222222211
Q ss_pred -------------CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009663 366 -------------HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGC 432 (529)
Q Consensus 366 -------------~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 432 (529)
..+...+|...|+.+.+ -|=......+|...+..+.... ...-..+...|
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y 151 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFY 151 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 11222334444444443 3333334444444443331000 01112245668
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHH
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGG---YGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 476 (529)
.+.|.+..|..-++.+++.-|+.+. ....++.+|.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999887544 5566788889999888554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.022 Score=52.54 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
.++..|.-+|.+.+++.+|++..+.. .. ++|......-..+|...|+++.|+..|+++++++|+|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46778889999999999999999887 43 45788888889999999999999999999999999999999999887777
Q ss_pred cCCHHHH-HHHHHHHhhC
Q 009663 469 LGKWDEV-RKVRKMLKDR 485 (529)
Q Consensus 469 ~g~~~~a-~~~~~~~~~~ 485 (529)
...+.+. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665544 7788888644
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.16 Score=44.08 Aligned_cols=149 Identities=14% Similarity=0.038 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEV 412 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 412 (529)
+.-++.|++=. ....+.++.++.-.|.+.-....+.++++. .-+.++...+.|.+.-.+.|+.+.|...
T Consensus 166 ESsv~lW~KRl----------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y 234 (366)
T KOG2796|consen 166 ESSIRLWRKRL----------GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKY 234 (366)
T ss_pred hhHHHHHHHHH----------HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 55556665532 234556666777777888888888888764 3233677778888888888888888888
Q ss_pred HHhC----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 413 VKGM----K----IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 413 ~~~~----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
|++. + +.-...+.......+.-++++..|...+.+....+|.++.+.+.-+-++.-.|+..+|++.++.|.+
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8854 1 2222233333333455677888888888888888888888888777777778888888888888887
Q ss_pred CCCccCCc
Q 009663 485 RNAYKTPG 492 (529)
Q Consensus 485 ~~~~~~~~ 492 (529)
.-..+...
T Consensus 315 ~~P~~~l~ 322 (366)
T KOG2796|consen 315 QDPRHYLH 322 (366)
T ss_pred cCCccchh
Confidence 76555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=51.24 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPN---NGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
|..++...|++++|...|..+.+-.|+ -|..+.-|+.+..+.|+.++|..+|+++.++-
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 555566666666666666666554433 33445555555666666666666666665543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0097 Score=48.30 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCccCC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK-----DRNAYKTP 491 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~ 491 (529)
....++..+...|++++|...++++...+|.+...+..++.+|...|+..+|.++|+++. +.|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455667778889999999999999999999999999999999999999999999998884 34665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.041 Score=52.10 Aligned_cols=119 Identities=8% Similarity=0.094 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhC---------CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTH---------GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLL 400 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 400 (529)
.+.|+.+|.+... .....|+. ..|..+..++.. ..+..+|.++-++.. .+.| |+.....+..+.
T Consensus 274 ~~~Al~lf~ra~~--~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~ 348 (458)
T PRK11906 274 IYRAMTIFDRLQN--KSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHhh--cccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHH
Confidence 3456666666642 13445543 334444333321 112334444444444 2333 455555555555
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 401 GRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.-.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++.+++|..
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 5666666666666666 44554 3444444555555666666666666666666643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.8 Score=45.98 Aligned_cols=327 Identities=11% Similarity=0.022 Sum_probs=163.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc--hHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009663 82 AMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES--RGTKMVHTQIVKSGFEQYPVVETALVNSY 159 (529)
Q Consensus 82 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (529)
.+|.-+... +.+..|+++-+.+...-. +- ...|......+.+..+. +++.+..++=++... -....|..+.+..
T Consensus 442 ~vi~Rl~~r-~~Y~vaIQva~~l~~p~~-~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 442 VVIDRLVDR-HLYSVAIQVAKLLNLPES-QG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhHHHHhc-chhHHHHHHHHHhCCccc-cc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 356666666 888888888877743321 22 45566655555544222 222322222222212 2334566677777
Q ss_pred HhcCCCHHHHHHHHhhCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhH
Q 009663 160 SRSGNDIGIARKLFDEMSDR--------NVVSWTAMISGYTRVGDIKNAASLFDSMPDR-DVPAWNSVIAGCTQNGLFSD 230 (529)
Q Consensus 160 ~~~g~~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 230 (529)
...| +.+.|..+++.=... +..-+..-+.-+.+.||.+-...++-.+... +...+ +....+.-.
T Consensus 518 y~~G-R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l------~~~l~~~p~ 590 (829)
T KOG2280|consen 518 YQEG-RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL------FMTLRNQPL 590 (829)
T ss_pred HhcC-cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH------HHHHHhchh
Confidence 7788 888888887654331 2223334444455555555555554444321 11111 111122333
Q ss_pred HHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHH-HHHHHHh-CCCCCccHHHHHHHHHHhCCCHHHH----
Q 009663 231 AISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVI-HGYVYRN-GLDLDSFISNALIDMYGKCGSLKEA---- 304 (529)
Q Consensus 231 A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A---- 304 (529)
|..+|.+..+. .-. . .+-..+....+....-.+ ++...+. -+.+-..........+.+.....-.
T Consensus 591 a~~lY~~~~r~---~~~---~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 591 ALSLYRQFMRH---QDR---A---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhHHHHHHHHh---hch---h---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 44444443221 000 0 011111111111111111 1110000 0111122222333444443331111
Q ss_pred ------HHHHhhcCCC-C----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 305 ------RRAFDRNSKK-R----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 305 ------~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
+.+.+.+... + ..+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-------ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-------IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-------CcchhhHHHHHHHHHhhhhHHHH
Confidence 1112222111 1 1144445566677788888888877664 37777787788888888888776
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
+++-+... .+..|.-.+.+|.+.|+.++|.+++.+.+-.+ -...+|.+.|++.+|.++.-+-
T Consensus 735 ekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 735 EKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHHh
Confidence 65544332 25567778888899999999999988884222 4566777888888887765433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.015 Score=47.11 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
..++..+...|++++|.++++.+ ...| +...|..++.++...|+..+|.+.|+++.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455555555666665555555 2233 455555556666666666666655555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.032 Score=43.42 Aligned_cols=53 Identities=13% Similarity=0.252 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 009663 348 HNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLL 400 (529)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 400 (529)
....|+..+..+++.+|+..|++..|.++.+.+.+.++++-+..+|..|++-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777666677777666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.12 Score=39.61 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=81.3
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRF 406 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 406 (529)
.-.|..++..++..+... . .+..-++-+|--....-+-+-..++++.+-+-+.+. .+|++
T Consensus 13 ildG~V~qGveii~k~v~---S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~Nl 72 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN---S---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNL 72 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH---H---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-T
T ss_pred HHhchHHHHHHHHHHHcC---c---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcch
Confidence 345777777777766654 1 233334444433333344445555555554332222 23344
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 407 EEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 407 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
......+-.++ .+...+..-+..+...|+-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++-+++++..++|
T Consensus 73 KrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 73 KRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44444333332 3455667778888999999999999999886554489999999999999999999999999999999
Q ss_pred Cc
Q 009663 487 AY 488 (529)
Q Consensus 487 ~~ 488 (529)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.59 Score=43.99 Aligned_cols=413 Identities=11% Similarity=0.038 Sum_probs=226.3
Q ss_pred HHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhC
Q 009663 67 FIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSG 144 (529)
Q Consensus 67 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (529)
++-++++ +.|+.+|-.||.-+..+ +..++..+++++|..-- +--...|..-+++-....++.....+|.+.+...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq-~s~~~~re~yeq~~~pf--p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQ-ESMDAEREMYEQLSSPF--PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhh-hhHHHHHHHHHHhcCCC--ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 5556665 45778999999999999 99999999999997542 4455677777887677789999999999998875
Q ss_pred CCCchhHHHHHHHHHHhcCC--------CHHHHHHHHhhCC--CC-ChhhHHHHHHHH---H------hcCCHHHHHHHH
Q 009663 145 FEQYPVVETALVNSYSRSGN--------DIGIARKLFDEMS--DR-NVVSWTAMISGY---T------RVGDIKNAASLF 204 (529)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~--------~~~~A~~~~~~~~--~~-~~~~~~~ll~~~---~------~~g~~~~A~~~~ 204 (529)
.. ...|...+.--.+.++ .+-+|.++.-... +| ....|+..+..+ - .+.+++.....+
T Consensus 107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 54 5555555443333221 1222333222211 12 333454444322 1 233445555556
Q ss_pred hhCCC-C---------ChhhHHHHHHHHHh-------CCChhHHHHHHHHhhhcccCCCCC----CHHHHHH--------
Q 009663 205 DSMPD-R---------DVPAWNSVIAGCTQ-------NGLFSDAISFFRRMGMEVSDNIRP----NQVTLVC-------- 255 (529)
Q Consensus 205 ~~~~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~~~~~~~~p----~~~~~~~-------- 255 (529)
.++.. | |-..|..=+..... .--+-.|.+.+++...- -.|+.. +..+++-
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nl-t~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNL-TRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-hccccccCchhhhhhccccccccch
Confidence 55543 1 11112111111110 11234455555554321 112221 1222222
Q ss_pred ---HHHHhhc-----cCC--chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHH
Q 009663 256 ---ALSAIGH-----TGM--LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINS 325 (529)
Q Consensus 256 ---ll~~~~~-----~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 325 (529)
.|.--.. .|+ .....-++++....- .....+|---...+...++-++|+.......+-.+..-..+...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~-~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYF-YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 1111000 000 011112222222221 11222333333344556777888877765432211111111112
Q ss_pred HHHcCChhHHHHHHHHHhh-------cc----cCCC---------------CCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 326 FALHGQSENSICVFEEMMR-------CQ----DHNI---------------RPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~-------~~----~~~~---------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
|.-.++.+.....|+.... +. ..+. ..-...|...+....+...++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222222222222211110 00 0000 11234567777777788889999999999
Q ss_pred hHHhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 009663 380 MTKTYR-IEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE-VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN-- 454 (529)
Q Consensus 380 ~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-- 454 (529)
+.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||. ...+..+..+...++-+.|..+|+..++.-.+
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9876 5 5678888999988765 67788899999764 334554 44466777788899999999999977763222
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
-..+|..++..-..-|+...|..+=++|.+.-..
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 3568888888778889999999998888776544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0047 Score=56.51 Aligned_cols=256 Identities=14% Similarity=0.094 Sum_probs=149.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHCCCCCCCcc----hHHHHHHhCccCCCchHHHHHHHHHH--H--hCCC-CchhHHHHH
Q 009663 85 TAYASQPAHASSAFSLYRDMVRRGQPQPNQF----IYPHVLKSCPDVLESRGTKMVHTQIV--K--SGFE-QYPVVETAL 155 (529)
Q Consensus 85 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~l 155 (529)
.-+|+. |+....+.+|+..++-| ..|.. +|..+.++|.-.+++++|.++...=+ . .|-+ -.......|
T Consensus 25 ERLck~-gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKM-GDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHhc-cchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 456788 99999999999999988 44543 46677778888889999988754211 1 1111 012223334
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhcCC--------------------HHHHHHHHhh
Q 009663 156 VNSYSRSGNDIGIARKLFDEMSD---------RNVVSWTAMISGYTRVGD--------------------IKNAASLFDS 206 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~ 206 (529)
.+.+--.| .+++|.....+-.. .....+..+...|...|+ ++.|.++|..
T Consensus 102 GNtlKv~G-~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 102 GNTLKVKG-AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred cchhhhhc-ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 44455556 66666554333221 122344455555654443 3334444432
Q ss_pred CC-------CC--ChhhHHHHHHHHHhCCChhHHHHHHHHhhhc-ccCCC-CCCHHHHHHHHHHhhccCCchHHHHHHHH
Q 009663 207 MP-------DR--DVPAWNSVIAGCTQNGLFSDAISFFRRMGME-VSDNI-RPNQVTLVCALSAIGHTGMLQLGKVIHGY 275 (529)
Q Consensus 207 ~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (529)
=. +. -...|..|...|.-.|+++.|+..-+.-..- ...|- ......+..+..++.-.|+++.|.+.|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 11 11 1234666666677778888888765432210 00011 12344677777888888888888888876
Q ss_pred HHHhCC-----CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHH
Q 009663 276 VYRNGL-----DLDSFISNALIDMYGKCGSLKEARRAFDRNSK-------K--RLTSWNSMINSFALHGQSENSICVFEE 341 (529)
Q Consensus 276 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (529)
.....+ ........+|...|.-..++++|+.++.+-.. . ...++-+|..+|...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 543322 12233455677777777788888888764221 1 223667778888888888888877666
Q ss_pred Hhh
Q 009663 342 MMR 344 (529)
Q Consensus 342 m~~ 344 (529)
-.+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.55 Score=43.45 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
+.-+...|+...|.++-.+..-++-..|-..+.+++..++|++-..+.. .+-.| .-|..++.+|.+.|+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~-------skKsP--IGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK-------SKKSP--IGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh-------CCCCC--CChHHHHHHHHHCCCHH
Confidence 4444555556666666555555555556666666666666655544321 11112 34555555555556555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 372 QGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
+|..+..++. +..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555554421 12234555555555555554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.77 Score=44.96 Aligned_cols=385 Identities=11% Similarity=0.070 Sum_probs=218.8
Q ss_pred CChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcc-hHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHH
Q 009663 75 PNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQF-IYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVET 153 (529)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 153 (529)
-+...|..+|..--.. .+.+.+..++..++.. -|... -|......=.+.|..+.+..+|++.+.. ++.+...|.
T Consensus 43 ~~f~~wt~li~~~~~~-~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSI-EDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhccCch-hHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHH
Confidence 3445566666655555 5556667777777654 34433 3344444445677778888888877653 556677777
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh---
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSD------RNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQ--- 224 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--- 224 (529)
.....+.....+.+.....|+.... .....|...|.--..++++.....+++++.+-....|+..-..|.+
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 6665554443277777777777654 3455677777777777888888888887765433333322222211
Q ss_pred C------CChhHHHHHHHHhhhc----------------ccCCCCCC-HH--HHHHHHH-------HhhccCCchHHHHH
Q 009663 225 N------GLFSDAISFFRRMGME----------------VSDNIRPN-QV--TLVCALS-------AIGHTGMLQLGKVI 272 (529)
Q Consensus 225 ~------g~~~~A~~~~~~m~~~----------------~~~~~~p~-~~--~~~~ll~-------~~~~~~~~~~a~~~ 272 (529)
. ...+++.++-...... ...-..|. .. ..+.+-. ++............
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 1122222222111100 00000110 00 0111111 11111122222222
Q ss_pred HHHHHHhC---CC----CCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 273 HGYVYRNG---LD----LDSFISNALIDMYGKCGSLKEARRAFDRNSKKR---LTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 273 ~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
++.-++.. +. ++..+|..-+..-...|+.+.+.-+|++..-+- ...|-..+.-....|+.+-|..++...
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 22222211 11 234467777777788999999999998876552 235666666666669999998888776
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhC-C
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEAL---EVVKGM-K 417 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~ 417 (529)
.+. ...-.|....+.+.+ +...|++..|..+++.+... . |+ ...-..-+....+.|+.+.+. +++... .
T Consensus 358 ~~i-~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 358 CKI-HVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred hhh-cCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 540 011233333333333 34568999999999999875 2 65 333344455667888888888 555444 1
Q ss_pred CCCCHHHHH----HHHHH-HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 418 IEPDEVVWG----SLLNG-CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 418 ~~p~~~~~~----~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
..-+..+.. ..... +.-.++.+.|..++.++.+..|++...+..+.......+
T Consensus 432 ~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 432 GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 122222222 22222 455789999999999999999999999999888777665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0041 Score=44.07 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-----KIE---PD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
.+|+.+...|...|++++|+..|++. ... |+ ..++..+..++...|++++|++.++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666667777777666666655 111 22 456677777788888888888888877653
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.073 Score=41.91 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 009663 397 VDLLGRAGRFEEALEVVKGM----KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 33445667777777777666 2222 34455567778888888888888888888888876553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.13 Score=45.83 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG---RFEEALEVVKGM-KIEP-DEVVWGS 427 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~~ 427 (529)
|...|..|...|...|+...|...|....+-. .+++..+..+..++.... ...++..+|+++ ...| |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 56678888888888888888888888776432 224566666665544332 356777888777 4455 4555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
|...+...|++.+|...|+.|++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667888888888888888888877644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.032 Score=51.49 Aligned_cols=66 Identities=18% Similarity=0.044 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..++..+..++.+.+++..|++..+++++++|+|....+.-+.++...|+++.|+..|+++.+...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 345677788899999999999999999999999999999999999999999999999999987643
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.1 Score=46.09 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
+.+.|...+.......++.+. ..+...+.......+..++|..++... ....+.....--+....+.++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 445555555555433233322 112223322222222244555555544 11123333333333333556666555555
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 446 KKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 446 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
..+............-+++++...|+.++|..+|+++
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5554433334445555556655566666666666555
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.14 Score=40.35 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=54.1
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--HHHHHHHHH--HHHcC-
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE--VVWGSLLNG--CKIYG- 436 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~--~~~~g- 436 (529)
..+.|++++|.+.|+.+..++...| ....-..|+.+|.+.|++++|...+++. .+.|+. .-|...+.+ .....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 3455777777777777776544433 3445566777777777777777777665 333321 112222222 22221
Q ss_pred --------------CHHHHHHHHHHHHhcCCCCch
Q 009663 437 --------------RTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 437 --------------~~~~A~~~~~~~~~~~p~~~~ 457 (529)
....|...|+++++.-|++.-
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 256777777888877776543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.3 Score=44.61 Aligned_cols=308 Identities=10% Similarity=0.057 Sum_probs=170.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcC---CHHHHHHHHhhCCC--CChhhHHHHHHHHHhC
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSDRN---VVSWTAMISGYTRVG---DIKNAASLFDSMPD--RDVPAWNSVIAGCTQN 225 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 225 (529)
.+++-+...+ .+..|.++-..+..|. ...|......+.+.. +-+-+..+-+++.. -...+|..+.......
T Consensus 442 ~vi~Rl~~r~-~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRH-LYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcc-hhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 4555666666 7777777777776654 455666666666552 23334444444544 3445677777777777
Q ss_pred CChhHHHHHHHHhhhcccCCCCC---CHHHHHHHHHHhhccCCchHHHHHHHHHHHhC-----------CCCCccHHHHH
Q 009663 226 GLFSDAISFFRRMGMEVSDNIRP---NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNG-----------LDLDSFISNAL 291 (529)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l 291 (529)
|+.+-|..+++.=... ....| +-.-+...+.-+...|+.+....++-.+.+.- .+.....|.-+
T Consensus 521 GR~~LA~kLle~E~~~--~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 521 GRFELARKLLELEPRS--GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred CcHHHHHHHHhcCCCc--cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 7777777776543211 00001 11223344455566666666555554443321 11111122211
Q ss_pred HH--------HHHhCCCHHHHHHHHh--hc-----CCCChhHHHHHHHHHHHcCChh---H-------HHHHHHHHhhcc
Q 009663 292 ID--------MYGKCGSLKEARRAFD--RN-----SKKRLTSWNSMINSFALHGQSE---N-------SICVFEEMMRCQ 346 (529)
Q Consensus 292 ~~--------~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~~~~~---~-------a~~~~~~m~~~~ 346 (529)
+. .+.+.++-..+...|. .. ...-..........+.+..... + -+.+.+....
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~-- 676 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED-- 676 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH--
Confidence 11 0111111111211111 00 0011112223334444433311 1 1122222211
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 009663 347 DHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWG 426 (529)
Q Consensus 347 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 426 (529)
+.|......+.+--+.-+...|+..+|.++-.+.+ -|+...|.--+.+++..++|++-+++-+..+ .+.-|.
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~ 748 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYL 748 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCch
Confidence 13333344455555666677789999988887775 6888899889999999999999998888774 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
-+..+|.+.|+.++|.+++-+..... -...+|.+.|++.+|.+.--+-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHHh
Confidence 78889999999999998877653321 4667888999999998765443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.75 Score=43.11 Aligned_cols=168 Identities=11% Similarity=0.001 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC---CCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH---GGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
+-..++-+|....+++..+++++.+.......+.-....--...-++.+ .|+.++|.+++..+... .-.+++.+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 3445666799999999999999999752111111111222233445556 89999999999995544 5567888888
Q ss_pred HHHHHHHh---------cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCH----HHHHHHH---H-HHHhcC----
Q 009663 395 CLVDLLGR---------AGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRT----DFAEFAV---K-KLIEID---- 452 (529)
Q Consensus 395 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~---~-~~~~~~---- 452 (529)
.+...|-. ....++|...|.+. .+.|+...=-.++..+...|.. .+..++- . .+.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88777642 22478889998887 6666644322223233333432 1222222 1 111111
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
-.+...+..++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2255566778888899999999999999998763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.16 Score=44.98 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=83.0
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS---LLNGCKIYGRT 438 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 438 (529)
.....|++.+|..+|+..... .| +...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678888888888888754 33 456677788888999999999999988853333222222 23334444444
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 439 DFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 439 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.+...+ ++-...+|+|...-..++..+...|+.++|.+.+-.+.++..
T Consensus 220 ~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 220 PEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 433333 333346888888888999999999999999988877776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.18 Score=44.31 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM----KIEP-DEVVWGSL 428 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l 428 (529)
..|+..+..+ +.|++..|...|...++.+.-.+ .+..+--|..++...|++++|..+|..+ +..| -+..+-.+
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577666655 45779999999999887542111 2334445888899999999999988877 3333 35778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
..+..+.|+.++|...|+++.+..|+.+.+-.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88889999999999999999999997665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.056 Score=51.18 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDE----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
+...+..+..+|.+.|++++|+..|++. .+.|+. ..|..+..+|...|+.++|++.++++++..+. .+..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4667888888888888888888888875 667763 35888888888888888888888888886321 111111
Q ss_pred H--HHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 464 N--IYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 464 ~--~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
. .+....+.++..++++.+.+-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 0 111223334566666666666653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.12 Score=40.32 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMT--------------KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--- 416 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 416 (529)
..++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555554332 11133455555566666666666666666555544
Q ss_pred -CCCCCHHHHHHHHHH
Q 009663 417 -KIEPDEVVWGSLLNG 431 (529)
Q Consensus 417 -~~~p~~~~~~~l~~~ 431 (529)
+++.+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 444445555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.29 Score=47.57 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=107.1
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG 299 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 299 (529)
+...-.++++++.+..+.-. .-+.++ ....+.++.-+.+.|.++.|+.+...- ..-.+...+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~--ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN--LLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHH--TGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhh--hcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcC
Confidence 44566788888777776221 001222 344677777888888888888775432 22456777899
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 300 SLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 300 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
+++.|.++.++.. +...|..|.......|+++-|++.|.+... |..|+-.|...|+.+...++.+.
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHH
Confidence 9999999887665 566999999999999999999999999854 56666677778888887777776
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 009663 380 MTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKI 418 (529)
Q Consensus 380 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 418 (529)
...+ | -++.-..++.-.|+.++..+++.+.+.
T Consensus 399 a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 399 AEER-G------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 6543 2 245566677778999999888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.2 Score=45.53 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC---HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC--CC--Ch
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD---GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI--EP--QI 390 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~ 390 (529)
.|..+..++.+..++.+++.+-..-..+ .|..|. .....++..++...+.++++.+.|+...+--.- .| ..
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l--pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL--PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC--CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4555555555555555555554443221 222221 112233445555556666666666665432110 11 23
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC--
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-------KIEP-----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PN-- 454 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-- 454 (529)
.++-.|...|.+..++++|+-+..+. ++.- ...+...+..++...|....|.+..+++.++. ..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45666666666666666655444333 2111 11233344455666666666666666665522 12
Q ss_pred --CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 455 --NGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 455 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.......++++|...|+.+.|..-|++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2233344566666667766666655554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.29 Score=39.63 Aligned_cols=90 Identities=9% Similarity=0.027 Sum_probs=71.7
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 437 (529)
..-+...|++++|..+|.-+..- .| +..-+..|..++-..+++++|...|... -+ .-|+..+-....++...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33455689999999999998742 44 6777888999999999999999999876 11 2345556668889999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 009663 438 TDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~ 454 (529)
.+.|...|+.+.+ .|.
T Consensus 121 ~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHHh-Ccc
Confidence 9999999999988 443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.029 Score=31.87 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677778888888888888888888888854
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.96 Score=40.33 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=108.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 303 EARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 303 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
...++++++..+....-..-.......|+..+|..+|..... . ..-+...-..+..+|...|+.+.|..++..+..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~---~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ---A-APENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH---h-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 444555555444222222233455677888888888888764 2 112345556778888889999999999888753
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhH
Q 009663 383 TYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGGYG 459 (529)
Q Consensus 383 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 459 (529)
.. -.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -++....
T Consensus 197 ~~-~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 197 QA-QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred cc-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 31 11112222334556666666666666666664466 66777778888889999999998887777643 4467777
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 009663 460 IMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~ 478 (529)
..++..+.-.|..|.+...
T Consensus 276 k~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 276 KTLLELFEAFGPADPLVLA 294 (304)
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 8888888777755544433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.59 Score=46.12 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHHcCCHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEPQIEHYGC-LVDLLGRAGRFEEALEVVKGMK-I-----EPDEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~ 439 (529)
..+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|.+.|++.- . +.....+.-+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45677888888888755 466555433 3455677888888888888651 1 123445556666777888999
Q ss_pred HHHHHHHHHHhcCCCCchh-HHHHHHHHHhcCCH-------HHHHHHHHHHhhC
Q 009663 440 FAEFAVKKLIEIDPNNGGY-GIMLANIYGELGKW-------DEVRKVRKMLKDR 485 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~-------~~a~~~~~~~~~~ 485 (529)
+|.+.|.++.+.+.-+..+ ....+.++...|+. ++|.++++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999988865444333 34455566677888 8888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.68 Score=44.24 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
|......+..+....++++.|..+|++.. .+.|| ...|........-.|+.++|.+.+++. ...|
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 34444444444444555666666666655 34554 334444444445566666666666653 4444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.024 Score=32.25 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+|..++.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.19 Score=44.10 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=87.8
Q ss_pred ChhHHHHHhhcCC--CCChhHHHHHHHHHhcC----CCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCC------
Q 009663 61 NLTYARFIFDHLT--TPNTYLYTAMITAYASQ----PAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVL------ 128 (529)
Q Consensus 61 ~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~------ 128 (529)
++-..++.|+..+ ..|-.+|-..+..+... ++..+-....++.|.+.|+ ..|..+|+.|++.+-+..
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV-erDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV-ERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc-hhhHHHHHHHHHhCcccccccHHH
Confidence 3444566677766 56777888888777532 2667777888899999999 999999999999876543
Q ss_pred ----------CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009663 129 ----------ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 129 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~ 177 (529)
+-+-+..++++|...|+.||..+-..|++++.+.+.-..+..++.-.|.
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234678999999999999999999999999988844455555555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.74 Score=44.81 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 009663 149 PVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF 228 (529)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (529)
....+.++..+.+.| -.+.|+++...- ..-.....+.|+++.|.++.++.. +...|..|.....+.|++
T Consensus 295 ~~~~~~i~~fL~~~G-~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 295 KDQGQSIARFLEKKG-YPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred hhHHHHHHHHHHHCC-CHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 344666666677777 677776654321 233444556777777777666554 455777777777777777
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
+-|.+.|.+... +..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++
T Consensus 364 ~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 364 ELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 777777776541 33444445556666666666555555442 344444555556666666655
Q ss_pred hh
Q 009663 309 DR 310 (529)
Q Consensus 309 ~~ 310 (529)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.13 Score=39.23 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=49.7
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCc---hhHHHHHHHHHhcCCH
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID-PNNG---GYGIMLANIYGELGKW 472 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 472 (529)
+....|+.+.|++.|.+. .+-| ....||.-..++.-.|+.++|++-+++++++. |... ..+..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 345566666666666554 3232 45566666666666666666666666666643 2211 1333344455666666
Q ss_pred HHHHHHHHHHhhCCC
Q 009663 473 DEVRKVRKMLKDRNA 487 (529)
Q Consensus 473 ~~a~~~~~~~~~~~~ 487 (529)
+.|..=|+..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666666655554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.5 Score=37.97 Aligned_cols=199 Identities=12% Similarity=0.059 Sum_probs=100.7
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh--hHHHHHHHHHHHcC
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL--TSWNSMINSFALHG 330 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~ 330 (529)
|.-...++....++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+-+. ..|+.....|...|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445666667777777666655432 111111111 11223344444444443321 24555566777777
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC----CCChhHHHHHHHHHHhcCCh
Q 009663 331 QSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI----EPQIEHYGCLVDLLGRAGRF 406 (529)
Q Consensus 331 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~ 406 (529)
.++-|-..+++.-+ ....-+++.|+++|++...-... ..-...+......+.+..++
T Consensus 106 spdtAAmaleKAak-------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 106 SPDTAAMALEKAAK-------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred CcchHHHHHHHHHH-------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77766666665433 11123344444444433211000 01123444455566777777
Q ss_pred HHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCchhHHHHHHHHHhcCCHHH
Q 009663 407 EEALEVVKGMK-----I--EPDE-VVWGSLLNGCKIYGRTDFAEFAVKKLIE----IDPNNGGYGIMLANIYGELGKWDE 474 (529)
Q Consensus 407 ~~A~~~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~ 474 (529)
++|-..+.+-+ + -++. ..+...+-.+.-..++..|..+++.--+ .+|++..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 77665554441 1 1221 2233444445556688888888887554 3466677777777665 5577777
Q ss_pred HHHHH
Q 009663 475 VRKVR 479 (529)
Q Consensus 475 a~~~~ 479 (529)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.50 E-value=3.3 Score=42.08 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCCh
Q 009663 150 VVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPD-RDVPAWNSVIAGCTQNGLF 228 (529)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 228 (529)
..+...+..+...| ++++|-...-.|...+..-|.-.+..+...++......++-.-.. -+...|..++..+..
T Consensus 393 kv~~~yI~HLl~~~-~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~---- 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEG-KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA---- 467 (846)
T ss_pred HHHHHHHHHHHhcc-hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH----
Confidence 45666777777777 788777777777777777777777666666665554444333222 245567777777665
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
.....+++... ..+++...-...+++.- .+..+ .- -+...-..|+..|...+++..|..++
T Consensus 468 ~~~~~F~e~i~-----~Wp~~Lys~l~iisa~~------------~q~~q-~S-e~~~L~e~La~LYl~d~~Y~~Al~~y 528 (846)
T KOG2066|consen 468 SDVKGFLELIK-----EWPGHLYSVLTIISATE------------PQIKQ-NS-ESTALLEVLAHLYLYDNKYEKALPIY 528 (846)
T ss_pred HHHHHHHHHHH-----hCChhhhhhhHHHhhcc------------hHHHh-hc-cchhHHHHHHHHHHHccChHHHHHHH
Confidence 22222333332 23433333323332210 00111 00 12223344888999999999999998
Q ss_pred hhcCCCCh
Q 009663 309 DRNSKKRL 316 (529)
Q Consensus 309 ~~~~~~~~ 316 (529)
-...+.++
T Consensus 529 lklk~~~v 536 (846)
T KOG2066|consen 529 LKLQDKDV 536 (846)
T ss_pred HhccChHH
Confidence 87776654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.52 Score=42.54 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHH----HHHHHHHhCCCcH
Q 009663 298 CGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF----ISLLNACTHGGLV 370 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~----~~l~~~~~~~~~~ 370 (529)
.|+..+|-..++++.+ .|..++...=.+|...|+.+.-...++++.. ...|+...| ..+.-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip----~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP----KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc----ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4555555555554443 2444555555555566666555555555542 223333222 1222233445555
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 371 EQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
++|++.-++.. .+.+ |.-.-.++...+...|++.++.++..+-
T Consensus 192 ~dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555555544 2233 2333344445555555555555555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.1 Score=35.86 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCH
Q 009663 118 PHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 197 (529)
..++..+...+.......+++.+...+. .+...++.++..|++.+ .....+.++. ..+.......++.|.+.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3444444444555555666665555542 45555666666665543 3334444442 12223333345555555555
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhC-CChhHHHHHHHH
Q 009663 198 KNAASLFDSMPDRDVPAWNSVIAGCTQN-GLFSDAISFFRR 237 (529)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 237 (529)
+++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 86 ~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 86 EEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 555555554432 11122222223 555555555553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.23 Score=44.65 Aligned_cols=162 Identities=10% Similarity=-0.002 Sum_probs=119.2
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHh
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG----CLVDLLGR 402 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~ 402 (529)
...|+..+|-..++++. ...+.|...+..-=.+|...|+.......++++... ..|+...|. .+..++..
T Consensus 114 ~~~g~~h~a~~~wdklL----~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLL----DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hccccccHHHHHHHHHH----HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHH
Confidence 45788888888999987 455567677777778888899999999999888753 355554443 34555668
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHHHHH
Q 009663 403 AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN----NGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 403 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
+|-+++|++.-++. .++| |.....+....+.-.|++.++.++..+-...-.. -..-|...+-.+...+.++.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 99999999999887 6555 6777778888888899999999988776542211 1233445566778889999999
Q ss_pred HHHHHHhhCCCccCCccc
Q 009663 477 KVRKMLKDRNAYKTPGCS 494 (529)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~ 494 (529)
++|+.=.-+.+.++.+.+
T Consensus 268 eIyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHHHhhccchhh
Confidence 999887766666666533
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.8 Score=37.88 Aligned_cols=194 Identities=22% Similarity=0.206 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK-----KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISL 360 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 360 (529)
..+......+...+.+..+...+..... .....+......+...++...+...+..... ....+ .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~ 135 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA---LDPDP-DLAEALL 135 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc---CCCCc-chHHHHH
Confidence 4445555555666666666655554331 2233455555555566666666666666643 22222 1111122
Q ss_pred HH-HHhCCCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHH
Q 009663 361 LN-ACTHGGLVEQGRAYFKLMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD--EVVWGSLLNGC 432 (529)
Q Consensus 361 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~ 432 (529)
.. .+...|+++.+...+..... ..| ....+......+...++.+.+...+... ...++ ...+..+...+
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 22 45566677777777666642 122 2233333334455666777777766665 32333 45566666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
...++++.|...+..+....|.....+..+...+...|..+++...+.+.....
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666677777777777777666544455555555555566777776666665443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.7 Score=39.93 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=76.6
Q ss_pred CCCCCCHHH-HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 348 HNIRPDGVT-FISLLNACTHGGLVEQGRAYFKLMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 348 ~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
.-+.|+... ...+...+.+ +.+++..+.+.+... .+.+ =..+|..++....+.++...|.+.+.-. -+.|+
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~-~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS-KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 445565433 2344444444 667777777766533 3333 1457778888888899999998888776 34555
Q ss_pred HHHHHHHH-------HHHH----HcCCHHHHHHHHHHHHhcCCCCchhHHH---HHHHHHhcCC-HHHHHHHHHHHhhC
Q 009663 422 EVVWGSLL-------NGCK----IYGRTDFAEFAVKKLIEIDPNNGGYGIM---LANIYGELGK-WDEVRKVRKMLKDR 485 (529)
Q Consensus 422 ~~~~~~l~-------~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~-~~~a~~~~~~~~~~ 485 (529)
...-..++ +..+ ...+...-+.+|+.+...+.+....... -+.-+.+.|. -++|+++++.+.+-
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 44322221 1111 1223344455666666655543333333 3445667776 78888888877643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.3 Score=35.48 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=38.5
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHH
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENS 335 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 335 (529)
++..+...+.......+++.+.+.+. .+...++.++..|++.+ ..+..+.+.. ..+.......+..|.+.+.++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 34444444555566666666555543 45556666666666532 2333333331 11222223344444444444444
Q ss_pred HHHHHHH
Q 009663 336 ICVFEEM 342 (529)
Q Consensus 336 ~~~~~~m 342 (529)
.-++.++
T Consensus 89 ~~l~~k~ 95 (140)
T smart00299 89 VELYKKD 95 (140)
T ss_pred HHHHHhh
Confidence 4444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.3 Score=39.94 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=25.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcccCCCC-CCHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 009663 322 MINSFALHGQSENSICVFEEMMRCQDHNIR-PDGVTFISLLNACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 380 (529)
+..+..+.|+.++|++.++++.+ .... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlk---e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLK---EFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHh---hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 44444455555555555555542 1100 11123334455555555555555555444
|
The molecular function of this protein is uncertain. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.18 Score=41.80 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=64.8
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIY 435 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 435 (529)
-+...|++++|..-|..+... +++. ...|..-..++.+.+.++.|+.-..+. .+.|. ...+..-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 356678888888888877753 2222 234444455667777777777766655 55553 22333334556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
..+++|++-|+++++.+|....+...+++.--
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 77888888888888888876666555555433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.2 Score=37.17 Aligned_cols=197 Identities=19% Similarity=0.129 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHh-CCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHH-
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRN-GLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMIN- 324 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~- 324 (529)
...+......+...+.+..+...+...... ........+......+...+++..+...+...... +.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344445555555666666666655555442 22233444555555666666677777777655432 1122223333
Q ss_pred HHHHcCChhHHHHHHHHHhhcccCCCCC----CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHH
Q 009663 325 SFALHGQSENSICVFEEMMRCQDHNIRP----DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHYGCLVD 398 (529)
Q Consensus 325 ~~~~~~~~~~a~~~~~~m~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~ 398 (529)
.+...|+++.|...+.+.. . ..| ....+......+...++.+.+...+...... .++ ...+..+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 210 (291)
T COG0457 139 ALYELGDYEEALELYEKAL----E-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGL 210 (291)
T ss_pred HHHHcCCHHHHHHHHHHHH----h-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhH
Confidence 6788888888888888874 2 333 2333444444466778899999999888743 333 677888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888899999999999887 44554 455555555555777899999999999998885
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.1 Score=39.82 Aligned_cols=58 Identities=12% Similarity=-0.105 Sum_probs=53.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..++...|+.+.|++.|.+++.+-|..+++|+.-+.++.-+|+.++|++=+++..+..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999999999999999999999999998887654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.4 Score=43.42 Aligned_cols=81 Identities=17% Similarity=0.045 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 437 (529)
..|+.+|.+.++.++-.++.+... . |..- .-....+..+.+.+-.++|..+-.+.+. .......++ -..++
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~-g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~n 505 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-K-GEWF--FDVETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHN 505 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-C-ccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcC
Confidence 345555555555555444443332 1 1110 0122234444444445555444444432 222222222 23556
Q ss_pred HHHHHHHHHH
Q 009663 438 TDFAEFAVKK 447 (529)
Q Consensus 438 ~~~A~~~~~~ 447 (529)
+++|++.+..
T Consensus 506 y~eAl~yi~s 515 (933)
T KOG2114|consen 506 YEEALRYISS 515 (933)
T ss_pred HHHHHHHHhc
Confidence 6666666553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.32 Score=47.96 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=113.7
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC-CCh---------hHHHHHHHHHhcC---CCChHHH
Q 009663 31 QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT-PNT---------YLYTAMITAYASQ---PAHASSA 97 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~~~---------~~~~~ll~~~~~~---~~~~~~a 97 (529)
-++..+.+. +| .....++...+-.| |-+.+++++....+ .+. ..|+..+..++.. ..+.+.|
T Consensus 178 G~f~L~lSl-LP---p~~~kll~~vGF~g-dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 178 GLFNLVLSL-LP---PKVLKLLSFVGFSG-DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHh-CC---HHHHHHHhhcCcCC-cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 355555544 22 23457777777777 77777777766542 221 2466666555532 3678899
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHH-HhCccCCCchHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVL-KSCPDVLESRGTKMVHTQIVKSG---FEQYPVVETALVNSYSRSGNDIGIARKLF 173 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~~g~~~~~A~~~~ 173 (529)
.++++.+.++ -|+...|...- +.+...|++++|.+.++...... .+.....+-.+..++.-.+ ++++|.+.|
T Consensus 253 ~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHHHHHHH
Confidence 9999999987 56766654443 44678899999999999766421 1233455667777888888 999999999
Q ss_pred hhCCCCC---hhhHHHHH-HHHHhcCCH-------HHHHHHHhhCCC
Q 009663 174 DEMSDRN---VVSWTAMI-SGYTRVGDI-------KNAASLFDSMPD 209 (529)
Q Consensus 174 ~~~~~~~---~~~~~~ll-~~~~~~g~~-------~~A~~~~~~~~~ 209 (529)
..+.+.+ ...|.-+. .++...|+. ++|.++|.+++.
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9998732 23333333 334556777 889999988753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.24 Score=44.25 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
++..++..+...|+.+.+.+.+++. ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444444455555555555554444 2233 444455555555555555555555554444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.5 Score=35.71 Aligned_cols=118 Identities=13% Similarity=0.098 Sum_probs=50.0
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-----HHH
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV-----DLL 400 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-----~~~ 400 (529)
++.+..++|+.-|..+.+ .|...=.. .-..........|+...|...|+++-.. .|.+....-+. ..+
T Consensus 69 A~~~k~d~Alaaf~~lek---tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 69 AQENKTDDALAAFTDLEK---TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHcCCchHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHH
Confidence 445555666666666554 33221100 0111112234455556666666655433 22222221111 123
Q ss_pred HhcCChHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 401 GRAGRFEEALEVVKGMK--IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
...|.+++.....+-+. -.| ....-..|.-+-.+.|++..|...|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34555555555555441 122 122223444444555555555555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.16 E-value=4.4 Score=36.96 Aligned_cols=19 Identities=11% Similarity=-0.328 Sum_probs=13.2
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~ 449 (529)
.+.+.+++++|.++|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4566778888888777554
|
It is also involved in sporulation []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.1 Score=42.04 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=55.8
Q ss_pred HHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 009663 119 HVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIK 198 (529)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 198 (529)
.++..+.+.+.++....+++.+...+...+....+.++..|++.+ +.+...++++.... .-...++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~-~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD-PYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT-TCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC-CchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 456667777778888888888877665666777888888888887 66777777764333 33344555566666666
Q ss_pred HHHHHHhhCC
Q 009663 199 NAASLFDSMP 208 (529)
Q Consensus 199 ~A~~~~~~~~ 208 (529)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 6666555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.71 Score=40.65 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=76.3
Q ss_pred HHHHhhcC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC---------
Q 009663 305 RRAFDRNS--KKRLTSWNSMINSFALH-----GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG--------- 368 (529)
Q Consensus 305 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~--------- 368 (529)
++.|.... ++|-.+|.+.+..+... +.++-....++.|.+ .|+.-|..+|..|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e---yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE---YGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH---hcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 44455544 55666777777776543 445555556677776 999999999999988776532
Q ss_pred -------cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhC
Q 009663 369 -------LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRF-EEALEVVKGM 416 (529)
Q Consensus 369 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 416 (529)
+-+-+++++++|. .+|+.||-.+-..|+.++++.|-. .+..++.-.|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3356789999997 559999999999999999988863 3444444444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=4 Score=35.81 Aligned_cols=83 Identities=11% Similarity=-0.040 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHH
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALI 292 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (529)
..+-.-+..-.+.|++++|.+.|+.+.... +.-+-...+...++.++.+.++++.|....++..+.-+......|..-+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344444555677888888888888887431 1112234455666667778888888888888877765554444555555
Q ss_pred HHHH
Q 009663 293 DMYG 296 (529)
Q Consensus 293 ~~~~ 296 (529)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.8 Score=33.93 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=64.3
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQIE-HYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.-...++.+.+..++..+. -+.|... .-..-...+...|+|.+|.++|+++ ...|.......|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456778888888888887 4567533 2233344577889999999999988 334555555556655555444344
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
=...-+++.+.++ ++.+...+ ..+........|..
T Consensus 96 Wr~~A~evle~~~-d~~a~~Lv-~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGA-DPDARALV-RALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCC-ChHHHHHH-HHHHHhccccchhh
Confidence 4444555666555 44444444 33333333333333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.4 Score=32.86 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=65.2
Q ss_pred CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-CChhh---HHHHHHHHHhcCCHHHHHH
Q 009663 127 VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-RNVVS---WTAMISGYTRVGDIKNAAS 202 (529)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-~~~~~---~~~ll~~~~~~g~~~~A~~ 202 (529)
.|..++..++..+...+. +..-+|-++--....- +-+-..++++.+-. -|... .-.++.+|++.|...
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa-~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s---- 86 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAA-DCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLS---- 86 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH---HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---Cccccceeeeecchhh-chhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchH----
Confidence 455566666666555542 3334444443333333 44444454444433 12211 122333333333222
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC
Q 009663 203 LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL 281 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 281 (529)
.....-+....+.|+-++-.+++..+.+ .-.+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 87 ----------e~vD~ALd~lv~~~kkDqLdki~~~l~k----n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 ----------EYVDLALDILVKQGKKDQLDKIYNELKK----NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp ----------HHHHHHHHHHHHTT-HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ----------HHHHHHHHHHHHhccHHHHHHHHHHHhh----ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2233445666777777777777777642 2356666777777777777777777777777777775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.88 E-value=16 Score=42.53 Aligned_cols=311 Identities=10% Similarity=0.061 Sum_probs=168.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCC----C--ChhhHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhCC
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSD----R--NVVSWTAMISGYTRVGDIKNAASLFDS-MPDRDVPAWNSVIAGCTQNG 226 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~----~--~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g 226 (529)
.+..+-.+++ .+.+|.-.++.-.. . ...-|-.+...|...++.|....+... ..+++. ...|......|
T Consensus 1388 tLa~aSfrc~-~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCK-AYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhc
Confidence 4455666778 88888888888421 1 112333444478888888877777663 333332 23444566789
Q ss_pred ChhHHHHHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHH
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
+++.|...|+.+. +..|+ ..+++-++......|.+..+.-..+-......+-....++.-+.+--+.++++...
T Consensus 1464 ~~~da~~Cye~~~-----q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1464 NWADAAACYERLI-----QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred cHHHHHHHHHHhh-----cCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 9999999999988 44565 55677777766666776666554443332221111222333344556778888877
Q ss_pred HHHhhcCCCChhHHHHH--HHHHHHcCChh--HHHHHHHHHhhcccCCCCC--------C-HHHHHHHHHHHhCCCcHHH
Q 009663 306 RAFDRNSKKRLTSWNSM--INSFALHGQSE--NSICVFEEMMRCQDHNIRP--------D-GVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 306 ~~~~~~~~~~~~~~~~l--i~~~~~~~~~~--~a~~~~~~m~~~~~~~~~p--------~-~~~~~~l~~~~~~~~~~~~ 372 (529)
.... ..+...|... ...+.+..+-| .-.+..+.+++ .-+.| + ...|..++....-. +.+.
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~---~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE---LVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHH---HhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence 7765 4444444443 22222222211 11123333332 11111 0 01222222222110 1111
Q ss_pred HHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHHcCC
Q 009663 373 GRAYFKLMTKTYRIEPQ------IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEP-----DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~ 437 (529)
-.+.+ .+..++ ...|-.-+..-....+..+-.--+++. ..+| -..+|-.........|+
T Consensus 1612 ~~~~l------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 SIEEL------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHh------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 11111 122332 112222221111111111111111111 1122 25678888888888999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
++.|...+-++.+.. -+.++.-.+..+...|+...|+.++++..+.+..
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999999998888876 4577888889999999999999999999877653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.16 Score=28.72 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
+|..+...+...|++++|...|+++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666677777788888888888888777763
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.7 Score=41.76 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPN--NGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344444555555555555555543332 2334445555555555555555555544
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.17 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 459 GIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+..|+.+|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677888888888888888888744
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.43 E-value=7.2 Score=36.97 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
+..+++...|.++.+..|.....+..++..+.+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 7889999999999999998888888887766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=6.1 Score=36.01 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=40.5
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh----hHHHHHHHHhhhcccCCCCC
Q 009663 173 FDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF----SDAISFFRRMGMEVSDNIRP 248 (529)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~p 248 (529)
++.+.++|.......+.++...|..+-...+..-+..+|...-..-+.++.+.|+. +++...+..+.. -.|
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~-----~D~ 103 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL-----EDK 103 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh-----cCC
Confidence 33334455555555555555555433333333333444555555555555555543 345555555532 244
Q ss_pred CHHHHHHHHHHhhcc
Q 009663 249 NQVTLVCALSAIGHT 263 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~ 263 (529)
+...-...+.++...
T Consensus 104 d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 104 SACVRASAINATGHR 118 (280)
T ss_pred CHHHHHHHHHHHhcc
Confidence 444444444444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.66 Score=36.71 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=32.4
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 402 RAGRFEEALEVVKGM-KIEPDEVVWGSL-LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
..++.+++..+++.+ -+.|+..-...+ ...+...|++.+|+++|+...+-.+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355566666666555 233332221111 1223455666666666666655554334344444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.39 E-value=4.7 Score=34.74 Aligned_cols=56 Identities=4% Similarity=-0.192 Sum_probs=31.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH-------HHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML-------ANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.-...+++.+|+.+|++......+++-.-..+ +.++.-.++.-.+...+++..+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 34567889999999999887555444332222 222333345545555555554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.5 Score=35.67 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=69.7
Q ss_pred HhCCCHHHHHHHHhhcCCCChhHHHHHH-----HHHHHcCChhHHHHHHHHHhhcccCCCCCCHH-HHHHH--HHHHhCC
Q 009663 296 GKCGSLKEARRAFDRNSKKRLTSWNSMI-----NSFALHGQSENSICVFEEMMRCQDHNIRPDGV-TFISL--LNACTHG 367 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l--~~~~~~~ 367 (529)
.+.++.++|+.-|..+.+.+...|..|. ....+.|+...|...|.++-. ....|-.. -..-| .-.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~---dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA---DTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc---cCCCcchhhHHHHHHHHHHHhcc
Confidence 4556677777777776666554444432 345677888888888888754 33334322 11111 1234567
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
|.++....-.+-+... +-+.....-..|.-+-.+.|++.+|.++|..+
T Consensus 146 gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 146 GSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred ccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7777777666665432 21122333456666777888888888888877
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.19 Score=28.97 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888999999999999998654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.2 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 456 GGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 456 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|.++..++.+|.+.|++++|+++++++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999988754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.09 E-value=7.2 Score=36.01 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC---HHHHHHHHHHhhccCCchHHHHHHHHHHHhC-----CCCC
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN---QVTLVCALSAIGHTGMLQLGKVIHGYVYRNG-----LDLD 284 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 284 (529)
..|..+.+++-+..++.+++.+-..-. .-+|..|. .....++..++...+.++++++.|+.+.+.. ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l--~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCL--GLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh--cCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 356666777777777777777666544 22244441 1223345556677777888888887766532 2233
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhc-------CCCChh------HHHHHHHHHHHcCChhHHHHHHHHHhhcc-cCCC
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRN-------SKKRLT------SWNSMINSFALHGQSENSICVFEEMMRCQ-DHNI 350 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~ 350 (529)
..++..|...|.+..++++|.-+..+. .-.|.. +...|..++...|..-.|.+..++..++. ..|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 457778888888888888876554332 112222 22233445566666666666665544310 0222
Q ss_pred CC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 351 RP-DGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 351 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.| -......+...|...|+.+.|+.-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 11223345555666677776666666544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=6.8 Score=35.70 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=114.1
Q ss_pred CCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCCh----HHHHHHHHHHHHCCCCCCCcchH
Q 009663 42 SQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHA----SSAFSLYRDMVRRGQPQPNQFIY 117 (529)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~ 117 (529)
.++..+....+..+...| ..+....+..-+.++|...-...+.++.+- |+. .++...+..+... .++...-
T Consensus 34 d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~~~a~~~L~~l~~~---D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQDNVFNILNNLALE---DKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHhc---CCCHHHH
Confidence 456666667777777766 444434343433456666666666666666 653 4567777666443 4555555
Q ss_pred HHHHHhCccCCCchH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 009663 118 PHVLKSCPDVLESRG--TKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVG 195 (529)
Q Consensus 118 ~~l~~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 195 (529)
...+.++...+.... ..+.++.+...-..++..+-...+.++.+.+ +.+....+..-+..+|...-...+.++++.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-DEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 555555554432111 1122222222222335556666667777777 5444434444444455555555555555542
Q ss_pred -CHHHHHH-HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHH
Q 009663 196 -DIKNAAS-LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273 (529)
Q Consensus 196 -~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (529)
+.+.+.. +...+.+++..+-..-+.++.+.|+. .|+..+-...+. ++ .....+.++...|.. ++...+
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~------~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK------GT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC------Cc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 1223333 33344556666666666677766663 444444443321 11 123455566666664 455555
Q ss_pred HHHHHh
Q 009663 274 GYVYRN 279 (529)
Q Consensus 274 ~~~~~~ 279 (529)
..+.+.
T Consensus 258 ~~l~~~ 263 (280)
T PRK09687 258 DTLLYK 263 (280)
T ss_pred HHHHhh
Confidence 555543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.90 E-value=5.9 Score=34.46 Aligned_cols=207 Identities=12% Similarity=0.007 Sum_probs=107.4
Q ss_pred CCCch----hHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCC
Q 009663 41 QSQTN----FYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPN 113 (529)
Q Consensus 41 ~~~~~----~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 113 (529)
+.||. ..|..-..+|-... +++.|...+.+.. +.|...|++ . ..++.|.-+.++|.+. +--
T Consensus 23 wkad~dgaas~yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhA-------A-KayEqaamLake~~kl---sEv 90 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHA-------A-KAYEQAAMLAKELSKL---SEV 90 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHH-------H-HHHHHHHHHHHHHHHh---HHH
Confidence 55654 45666666776666 8888887766654 223322322 1 3455555555555443 122
Q ss_pred cchHHHHHHhCccCCCchHHHHHHHHHHHh--CCCCch--hHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHH
Q 009663 114 QFIYPHVLKSCPDVLESRGTKMVHTQIVKS--GFEQYP--VVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMIS 189 (529)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~ 189 (529)
...|+.....|...|.++.|-..++..-+. ++.|+. ..|..-+..+...+ +...|.++ +...-+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d-r~~ma~el-----------~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD-RDQMAFEL-----------YGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-hHHHHHHH-----------HHHhhh
Confidence 334555556667777777766666655432 223332 23333333333333 33333333 344455
Q ss_pred HHHhcCCHHHHHHHHhhCCC--------CCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHh
Q 009663 190 GYTRVGDIKNAASLFDSMPD--------RDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAI 260 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~ 260 (529)
.+++...+++|-..|.+-.. ++. ..|-..|-.|.-..++..|...++.-.+.....-+-+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 66666666666655544332 111 234455556666778888888888754321112233555666676665
Q ss_pred hccCCchHHHHH
Q 009663 261 GHTGMLQLGKVI 272 (529)
Q Consensus 261 ~~~~~~~~a~~~ 272 (529)
- .|+.+++..+
T Consensus 239 d-~gD~E~~~kv 249 (308)
T KOG1585|consen 239 D-EGDIEEIKKV 249 (308)
T ss_pred c-cCCHHHHHHH
Confidence 3 4555554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.89 E-value=1 Score=36.43 Aligned_cols=83 Identities=20% Similarity=0.095 Sum_probs=54.7
Q ss_pred hhHHHHHHHH---HHhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 390 IEHYGCLVDL---LGRAGRFEEALEVVKGM-KIEPDEVVWGSL-LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 390 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
..+.+.|+.. -.+.++.+++..++..+ -.+|.......+ ...+...|++.+|+.+|+.+.+..|..+..-..++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455444 34677888888888888 455654433332 333667888888888888888777777766677766
Q ss_pred HHHhcCCH
Q 009663 465 IYGELGKW 472 (529)
Q Consensus 465 ~~~~~g~~ 472 (529)
++...|+.
T Consensus 87 CL~~~~D~ 94 (160)
T PF09613_consen 87 CLYALGDP 94 (160)
T ss_pred HHHHcCCh
Confidence 66666653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.68 E-value=7.8 Score=36.74 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP----NNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
....+|..+...+.+.|+++.|...+.++...++ ..+.+...-+..+...|+..+|+..++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3567888899999999999999999999988552 2466777778889999999999999999887433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.18 E-value=4.7 Score=36.97 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=93.3
Q ss_pred cccccHHHHHHHHHHccC-cchH----HHHHHHHHHhCCCCchhHHHHHHHHHhh--cC---CChhHHHHHhhcCCC---
Q 009663 8 LNQTLNQQVLAILERCNH-INHL----KQLQSFLTTLGQSQTNFYAFKLVRFCTL--KL---SNLTYARFIFDHLTT--- 74 (529)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~-~~~~----~~i~~~~~~~~~~~~~~~~~~ll~~~~~--~~---~~~~~A~~~~~~~~~--- 74 (529)
.+......+..++...+. ++.. ..+++.|.+.|+..+..+|-+..-.... .. .....|..+++.|.+
T Consensus 55 lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 55 LRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 445556677777777665 5443 5799999999999888776664444433 11 135678888888862
Q ss_pred ----CChhHHHHHHHHHhcCCCCh----HHHHHHHHHHHHCCCCCCCcchHHHHHHhCc-cCCC--chHHHHHHHHHHHh
Q 009663 75 ----PNTYLYTAMITAYASQPAHA----SSAFSLYRDMVRRGQPQPNQFIYPHVLKSCP-DVLE--SRGTKMVHTQIVKS 143 (529)
Q Consensus 75 ----~~~~~~~~ll~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~-~~~~--~~~a~~~~~~~~~~ 143 (529)
++-..+..++.. .. .+. +.+...|+.+.+.|..+-|..-+.+-+-++. .... ...+.++++.+.+.
T Consensus 135 fLTs~~D~~~a~lLA~--~~-~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAM--TS-EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred cccCccchhHHHHHhc--cc-ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 334455566544 22 343 4667778888887764444433433333333 2222 34678889999999
Q ss_pred CCCCchhHHHHHHHHH
Q 009663 144 GFEQYPVVETALVNSY 159 (529)
Q Consensus 144 g~~~~~~~~~~l~~~~ 159 (529)
|+++....|..+.-..
T Consensus 212 ~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 212 GVKIKYMHYPTLGLLA 227 (297)
T ss_pred CCccccccccHHHHHH
Confidence 9887777766554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.2 Score=35.73 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCCh------hHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRL------TSWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
.+..+.+.|++.|+.+.|.+.|.++.+... ..+..+|....-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666666777777666666554321 2455566666666666666666666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.86 E-value=2.4 Score=34.90 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=40.1
Q ss_pred CCCCC-HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 417 KIEPD-EVVWGSLLNGCKIYG-----------RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 417 ~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
.+.|+ ..++..+..++...+ .+++|...|+++...+|++..+...|-.+ ++|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence 46675 466777776665433 36778888888888999776666555332 457777777766
Q ss_pred CCCc
Q 009663 485 RNAY 488 (529)
Q Consensus 485 ~~~~ 488 (529)
.+..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 6543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.49 Score=28.12 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455556666666666666666666554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.74 Score=41.69 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=43.6
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
|.++|.+++|+..|.... .+.| ++.++..-..+|.+..++..|..-.... .+ ..-...|..-+.+-...|...+
T Consensus 107 yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555555555444 2234 4455555555555555555444433332 11 0112233333344444556666
Q ss_pred HHHHHHHHHhcCCCCch
Q 009663 441 AEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~ 457 (529)
|.+-++.++++.|++..
T Consensus 184 AKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhHHHHHhhCcccHH
Confidence 66666666666665433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.56 E-value=3.3 Score=34.70 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=57.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-----HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDG-----VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCL 396 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 396 (529)
..-+...|++++|..-|..+.. -+++.. ..|..-..++.+.+.++.|+.-..+.+ .+.|+ ......-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale----~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RR 174 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE----SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERR 174 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH----hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHH
Confidence 3557778888888888887764 222221 234444456667777777777666665 33453 3334444
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEPDE 422 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p~~ 422 (529)
..+|.+...+++|++=|+.+ ...|..
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 56777777788887777776 444543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.56 E-value=6.8 Score=32.20 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=11.0
Q ss_pred HHHHHHHhCCChhHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRR 237 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~ 237 (529)
.++..+...|++-+|+++.+.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 344445555555555555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.54 E-value=9.2 Score=33.66 Aligned_cols=56 Identities=23% Similarity=0.167 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGG---YGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+...|.+.|.+-.|..-++++++.-|+.+. .+..+..+|...|..++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445688899999999999999987666443 55566778889999998887765553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.51 E-value=2.6 Score=35.27 Aligned_cols=93 Identities=13% Similarity=0.018 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHH--
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-K--IEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNNGGYGI-- 460 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~-- 460 (529)
...+..+...|.+.|+.++|++.|.++ . ..+ -...+-.++......+++..+.....++...- +.+....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 345667777788888888888888777 1 122 23455666677777778888777777776622 22222221
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHH
Q 009663 461 --MLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 461 --~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.-+-.+...|++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 1222345667888888777554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.34 E-value=16 Score=36.21 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=93.7
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHH
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNA 290 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (529)
+..+|..-+..-.+.|+++.+.-+|+...-. +..=...|-..+.-....|+.+.+..++....+--++-.+.+.-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~----cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP----CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH----HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 4567888888888899999998888887421 111112222223333333777777777776666544333322221
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC--CChh-HHHHHHHHHHHcCChhHHH---HHHHHHhhcccCCCCCCHH--HHHHHHH
Q 009663 291 LIDMYGKCGSLKEARRAFDRNSK--KRLT-SWNSMINSFALHGQSENSI---CVFEEMMRCQDHNIRPDGV--TFISLLN 362 (529)
Q Consensus 291 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~~~~p~~~--~~~~l~~ 362 (529)
-....-..|+++.|..+++.+.. ++.+ .-..-+....+.|+.+.+- +++..... ....+... .+.-..+
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~---~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE---GKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc---cccCcchhHHHHHHHHH
Confidence 22222345688888888776643 3322 1122233344555655555 33333322 11112111 1111111
Q ss_pred -HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 009663 363 -ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG 404 (529)
Q Consensus 363 -~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (529)
.+.-.++.+.|..++..+.. -++++...|..++......+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 11224566777777777763 33445666666666554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.43 Score=26.80 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.55 Score=26.10 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=14.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555555555555555555553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.91 E-value=9.3 Score=32.61 Aligned_cols=156 Identities=6% Similarity=-0.037 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC-CchhHHHHH
Q 009663 77 TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE-QYPVVETAL 155 (529)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l 155 (529)
+..||.+---+... |+++.|.+.|+...+.+ +....+...-.-++.-.|++.-|.+=+...-+.++. |-...|.-+
T Consensus 99 ~~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 99 PEVFNYLGIYLTQA-GNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHHhc-ccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 45677776666666 88888888888887765 222222222222234457777777666655554321 222223222
Q ss_pred HHHHHhcCCCHHHHHH-HHhhCCCCChhhHHHHHHHHHh-cCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCC
Q 009663 156 VNSYSRSGNDIGIARK-LFDEMSDRNVVSWTAMISGYTR-VGDIKNAASLFDSMPDR-------DVPAWNSVIAGCTQNG 226 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g 226 (529)
.. ..- ++.+|.. +.++....|..-|...|-.|.- .=..+.+.+-...-... =..||--+...+...|
T Consensus 176 ~E---~k~-dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 176 NE---QKL-DPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HH---hhC-CHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 21 112 4555543 3344444555555444433221 11111111111111111 1235555566666666
Q ss_pred ChhHHHHHHHHhh
Q 009663 227 LFSDAISFFRRMG 239 (529)
Q Consensus 227 ~~~~A~~~~~~m~ 239 (529)
+.++|..+|+-..
T Consensus 252 ~~~~A~~LfKLai 264 (297)
T COG4785 252 DLDEATALFKLAV 264 (297)
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.91 E-value=27 Score=37.90 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH
Q 009663 154 ALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAIS 233 (529)
Q Consensus 154 ~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 233 (529)
-.++.--+.| -+.+|+.++..=.+.-...|.+....+...+.+++|.-+|+...+ ...-+.+|...|+|.+|+.
T Consensus 913 e~~n~I~kh~-Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 913 ECKNYIKKHG-LYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHHHHhcc-cchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHH
Confidence 3344444555 666666555433333334455555556666777777666665543 2223566777888888888
Q ss_pred HHHHhhhcccCCCCCCHH--HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhc
Q 009663 234 FFRRMGMEVSDNIRPNQV--TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRN 311 (529)
Q Consensus 234 ~~~~m~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 311 (529)
+-.++. ..-+.. +-..|..-+...++.-+|-++..+.... ..-.+..|++...|++|..+-...
T Consensus 987 ~a~ql~------~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 987 LAAQLS------EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHhhc------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 888763 122222 1245666677777777776666554432 223455677777788887776554
Q ss_pred CCC
Q 009663 312 SKK 314 (529)
Q Consensus 312 ~~~ 314 (529)
...
T Consensus 1053 ~~~ 1055 (1265)
T KOG1920|consen 1053 KRD 1055 (1265)
T ss_pred ccc
Confidence 433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=4.4 Score=38.73 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=47.8
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
+...|.++.+.+.+... -+.....+..+++......|++++|....+-++.....++.+....+......|-+|++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44556666666666555 1233445555566666666666666666666665544444444444444444556666666
Q ss_pred HHHHHhhCC
Q 009663 478 VRKMLKDRN 486 (529)
Q Consensus 478 ~~~~~~~~~ 486 (529)
.++++..-+
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 666665443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.77 E-value=23 Score=36.82 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhhcCCCCChhH---HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHh
Q 009663 47 YAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYL---YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKS 123 (529)
Q Consensus 47 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~ 123 (529)
....-|....+.. -++.|..+-+.-.-+.... .....+-+.+. |++++|...|-+-... ..| ..++.-
T Consensus 336 ~le~kL~iL~kK~-ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~--le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKN-LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGF--LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHccc--CCh-----HHHHHH
Confidence 4455666666666 7788877766543222221 22223444556 9999999988766443 233 245565
Q ss_pred CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHH
Q 009663 124 CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNV-VSWTAMISGYTRVGDIKNAAS 202 (529)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~ 202 (529)
+.........-.+++.+.+.|.. +...-+.|+.+|.+.+ |.++-.++.+....-.. .-....+..+.+.+-.++|..
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHH
Confidence 66666777777888899999875 5556678999999999 99988888877763111 123455666667777777766
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 203 LFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
+-.+... +......+ +-..+++++|++++..+.
T Consensus 485 LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6555443 33333333 345688999999888764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.9 Score=33.22 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=48.2
Q ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHH
Q 009663 355 VTFISLLNA---CTHGGLVEQGRAYFKLMTKTYRIEPQIE-HYGCLVDLLGRAGRFEEALEVVKGMKI-EPDEVVWGSLL 429 (529)
Q Consensus 355 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~ 429 (529)
...+.|+.. -...++.+.+..+++.+. -+.|+.. .-..-...+...|+|++|.++|++..- .+....-..|+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344445443 345789999999999997 5577532 222234457789999999999999932 33333333444
Q ss_pred HHHHH
Q 009663 430 NGCKI 434 (529)
Q Consensus 430 ~~~~~ 434 (529)
..|..
T Consensus 85 A~CL~ 89 (153)
T TIGR02561 85 ALCLN 89 (153)
T ss_pred HHHHH
Confidence 43433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.40 E-value=24 Score=36.39 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 437 (529)
..+..|.+.|-+++-.-++.+|- .++.+|.-.--+.+++++|.++.++ .-|...|..|+..+...-.
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcH
Confidence 34444555555555555555442 1222333333455666666666665 3477888888877655433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.38 E-value=26 Score=36.78 Aligned_cols=85 Identities=15% Similarity=0.077 Sum_probs=43.4
Q ss_pred hCCCHHHHHHHHhhc----CCCCh-------hHHHHHH-HHHHHcCChhHHHHHHHHHhhc-ccCCCCCCHHHHHHHHHH
Q 009663 297 KCGSLKEARRAFDRN----SKKRL-------TSWNSMI-NSFALHGQSENSICVFEEMMRC-QDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~----~~~~~-------~~~~~li-~~~~~~~~~~~a~~~~~~m~~~-~~~~~~p~~~~~~~l~~~ 363 (529)
...++++|..++.++ ..++. ..|+.+- ......|++++|+++.+..... .+....+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 455666666665542 22211 1344432 2234456777777776665431 112222334445555555
Q ss_pred HhCCCcHHHHHHHHHHhH
Q 009663 364 CTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~ 381 (529)
..-.|++++|..+.+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 507 AHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHhchHHHHHHHHHHHH
Confidence 656677777776665554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.17 Score=36.74 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
..+++..+.+|+|......++..+...|++++|++.+-.+.++..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 445555556676666777777777777777777776666665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.64 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.5 Score=24.82 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.....++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777788887777764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=4.1 Score=36.64 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.--+.+|.+.|.+..|..=++...+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 455566788899999999999999999998888888888889999999999888877776654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.88 E-value=15 Score=33.45 Aligned_cols=159 Identities=8% Similarity=0.003 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCChh---HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 318 SWNSMINSFALHGQSE---NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
+...++.+|...+..+ +|..+++.+.. +.+-+ ...+..-+..+.+.++.+++.+.+.+|.... .-....+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~--e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~ 159 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLES--EYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH--hCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHH
Confidence 6677778887777655 45555555532 12222 3445455666767888999999999998642 21333444
Q ss_pred HHHHHH---HhcCChHHHHHHHHhC---CCCCCHH-HHHH-HHHH---HHHcCC------HHHHHHHHHHHHh--cCCCC
Q 009663 395 CLVDLL---GRAGRFEEALEVVKGM---KIEPDEV-VWGS-LLNG---CKIYGR------TDFAEFAVKKLIE--IDPNN 455 (529)
Q Consensus 395 ~l~~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-l~~~---~~~~g~------~~~A~~~~~~~~~--~~p~~ 455 (529)
..+..+ .... ...|...+..+ .+.|... .... ++.. ....++ .+...++++.+.+ ..|-+
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 444444 3333 34455555444 3344332 1111 1111 112111 4444455554333 22323
Q ss_pred chhHH-------HHHHHHHhcCCHHHHHHHHHHHh
Q 009663 456 GGYGI-------MLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 456 ~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+.+.. .-+..+.++++|++|.+.|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 33222 22445678899999999987543
|
It is also involved in sporulation []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.78 E-value=14 Score=32.73 Aligned_cols=224 Identities=13% Similarity=0.178 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCC--CCHHHHHHHHHHhhccCCchHHHHHHHHHHHh-----CCCCCcc
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIR--PNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN-----GLDLDSF 286 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 286 (529)
+...++..+.+.|++++.+..|.++..-..+.+. -+....+.++.-.+.+.+.+.-..+++.-++. +-..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3344566666777777777766666422111111 12334555555544445544444444432211 1111223
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC--------C-------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKK--------R-------LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
+-..|...|...|.+.+..++++++... | ...|..=|..|-...+-.+-..+|++.... ...-
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi--KSAI 224 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI--KSAI 224 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh--hccC
Confidence 4456778888888888888888765421 1 125666778888888878888888887652 2233
Q ss_pred CCHHHHHHHHHHH-----hCCCcHHHHHHHHHHhHHhcCC--CCC---hhHHHHHHHHHHhcCChHHHHHHHH--hC---
Q 009663 352 PDGVTFISLLNAC-----THGGLVEQGRAYFKLMTKTYRI--EPQ---IEHYGCLVDLLGRAGRFEEALEVVK--GM--- 416 (529)
Q Consensus 352 p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~--~~--- 416 (529)
|.... ...|+-| .+.|.+++|..-|-++-+.+.- .|. .--|..|...+.+.|-- -|+ +.
T Consensus 225 PHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPy 298 (440)
T KOG1464|consen 225 PHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPY 298 (440)
T ss_pred CchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCC
Confidence 43333 3344444 3567888876555444443322 221 22345555666655521 011 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+-.|.......++.+|.. ++..+-.+++.
T Consensus 299 KNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 299 KNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred CCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 224455566777777754 44444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.73 E-value=12 Score=33.57 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+++.....|..+|.+.+|.++.++++..+|-+...+-.++..+...|+--+|...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444556789999999999999999999999999999999999999998888888887753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.4 Score=38.02 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHH-----hCCCCchhHHHHH
Q 009663 81 TAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVK-----SGFEQYPVVETAL 155 (529)
Q Consensus 81 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 155 (529)
..++..+... |+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 157 ~~lae~~~~~-~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 157 TKLAEALIAC-GRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3345555555 66677777777776665 56666777777777777777777776666654 3555555555444
Q ss_pred HHH
Q 009663 156 VNS 158 (529)
Q Consensus 156 ~~~ 158 (529)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.31 E-value=52 Score=38.81 Aligned_cols=310 Identities=10% Similarity=0.009 Sum_probs=163.4
Q ss_pred HHHHhCccCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhcC
Q 009663 119 HVLKSCPDVLESRGTKMVHTQIVKSGF--EQYPVVETALVNSYSRSGNDIGIARKLFDE-MSDRNVVSWTAMISGYTRVG 195 (529)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~-~~~~~~~~~~~ll~~~~~~g 195 (529)
.+..+-.+.+.+.+|...++.-..... ......+-.+...|..-+ ++|....+... ...|+. ...|......|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~-dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIH-DPDGVEGVSARRFADPSL---YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcC-CcchhhhHHHHhhcCccH---HHHHHHHHhhc
Confidence 344455677788888888877311111 112234445556888888 88888877763 333333 23455567789
Q ss_pred CHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH-HHHHHhhccCCchHHHH
Q 009663 196 DIKNAASLFDSMPDRD---VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV-CALSAIGHTGMLQLGKV 271 (529)
Q Consensus 196 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~ 271 (529)
++..|...|+.+...+ ..+++.++......|.++.++-..+-.... ..+....++ .-+.+.-+.++++....
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~----~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN----RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc----cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 9999999999987633 557888888888888888888766655422 333333333 33344456677777766
Q ss_pred HHHHHHHhCCCCCccHHHH--HHHHHHhCCCHH--HHHHHHhhcC----CC-------C--hhHHHHHHHHHHHcCChhH
Q 009663 272 IHGYVYRNGLDLDSFISNA--LIDMYGKCGSLK--EARRAFDRNS----KK-------R--LTSWNSMINSFALHGQSEN 334 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~----~~-------~--~~~~~~li~~~~~~~~~~~ 334 (529)
.+. +. +..+|.. ++....+..+-| .-.+..+.+. .+ . ...|..++....-..-...
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 654 11 2222222 222222221111 1111111111 00 0 1244444443332211111
Q ss_pred HHHHHHHHhhcccCCCCCCH------HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-----ChhHHHHHHHHHHhc
Q 009663 335 SICVFEEMMRCQDHNIRPDG------VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-----QIEHYGCLVDLLGRA 403 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~ 403 (529)
...+ .+..++. .-|..-+.--....+..+-+--+++..-.....| -..+|....+...+.
T Consensus 1613 ~~~l---------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1613 IEEL---------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred HHHh---------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 1111 2222222 1222222211111112222222222111111122 256888888888889
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 404 GRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 404 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
|+++.|...+-..+...-+..+--.+.-+...|+...|+.++++.++..
T Consensus 1684 G~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999998777665222234455556677888999999999999999743
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.83 E-value=34 Score=35.97 Aligned_cols=216 Identities=12% Similarity=0.009 Sum_probs=116.3
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCcc-------HHHHH-HHHHHhCCCHHHHHHHHhhcCC--------CChhHHHHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSF-------ISNAL-IDMYGKCGSLKEARRAFDRNSK--------KRLTSWNSMI 323 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 323 (529)
.....++++|..+..++...-..|+.. .++.+ .......|++++|.++.+.... ..++.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 455677888888887776543333322 22222 2233456888888877764322 2455777888
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHH---HHHH--HHHhCCCc--HHHHHHHHHHhHHhcCC-CC----Chh
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPDGVTF---ISLL--NACTHGGL--VEQGRAYFKLMTKTYRI-EP----QIE 391 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~---~~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~-~p----~~~ 391 (529)
.+..-.|++++|..+..+..+ ..-.-+...| ..+. ..+..+|. +.+....+......+.. .| -..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~---~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQ---MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHH---HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 888889999999988887765 2222232222 2222 23455663 33344444444332111 11 123
Q ss_pred HHHHHHHHHHhcCChHHHHHH----HHhC-CCCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHH
Q 009663 392 HYGCLVDLLGRAGRFEEALEV----VKGM-KIEPD--EVV--WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN--GGYGI 460 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~----~~~~-~~~p~--~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~ 460 (529)
++..+..++.+ .+.+..- ++-- ...|. ... +..|+......|+.+.|...++++..+..+. ...|.
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 33444444444 3333322 2222 11222 222 2356677888999999999999998844222 22222
Q ss_pred HH---HH--HHHhcCCHHHHHHHHHH
Q 009663 461 ML---AN--IYGELGKWDEVRKVRKM 481 (529)
Q Consensus 461 ~l---~~--~~~~~g~~~~a~~~~~~ 481 (529)
.. +. .....|+..++...+.+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11 11 22356888888877655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.1 Score=40.58 Aligned_cols=87 Identities=16% Similarity=0.045 Sum_probs=67.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
.-|.++|.+++|+..|... ...| +++++..-..+|.+...+..|..-...++.++-.-..+|..-+.+-...|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4588999999999999875 6677 8888888889999999999999999999888764555666666665666777777
Q ss_pred HHHHHHHhh
Q 009663 476 RKVRKMLKD 484 (529)
Q Consensus 476 ~~~~~~~~~ 484 (529)
.+=++.+.+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 665555543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.7 Score=27.67 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
...+.-++.+.|++++|.+..+.+++..|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456677899999999999999999999987665443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.6 Score=25.92 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 458 YGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++..++.++.+.|++++|.+.++++.+.-.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999987643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.55 E-value=14 Score=31.11 Aligned_cols=90 Identities=16% Similarity=0.015 Sum_probs=58.9
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHc
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEPQI----EHYGCLVDLLGRAGRFEEALEVVKGMK-IEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~ 435 (529)
...+...|++++|...++..... +.|. ..-..|.......|.+++|+.+++... -.-.......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 44567778888888888776632 2221 122345566777888888888888763 111333344556678888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 009663 436 GRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p 453 (529)
|+-++|...|+++++..+
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 888888888888888764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.47 E-value=14 Score=31.08 Aligned_cols=91 Identities=13% Similarity=0.004 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 395 CLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS-----LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.+...+...|++++|..-++..--.|....+.. |.......|.+++|...++...+.+- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 345678899999999999987622444444433 34457788999999999887655332 334566778999999
Q ss_pred CCHHHHHHHHHHHhhCC
Q 009663 470 GKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 470 g~~~~a~~~~~~~~~~~ 486 (529)
|+.++|+.-|++....+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998876
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.35 E-value=15 Score=31.40 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH--HHhCCCcHHHHHHHHHHhHHhcCCCCChhHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN--ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY 393 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 393 (529)
...||-+.--+...|+++.|.+.|+...+ +.|. .-|..+=+ ++.-.|++.-|.+-+...-+.-.-.|-...|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-----LDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE-----LDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc-----cCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 34788888888888888888888888854 3342 11222222 2334678888877666655431112222222
Q ss_pred HHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHH
Q 009663 394 GCLVDLLGRAGRFEEALEVV-KGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN-------GGYGIMLANI 465 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~ 465 (529)
.-++ .+.-++.+|..-+ ++.. ..|..-|...+..+. .|+.. ...+++++.....++ ..+|.-|+.-
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2222 2233555665444 3332 344444444443322 12221 123344444322222 3466777788
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC
Q 009663 466 YGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 466 ~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+...|+.++|..+|+-....++
T Consensus 247 ~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhH
Confidence 8888999999988888776665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.23 E-value=21 Score=32.84 Aligned_cols=136 Identities=13% Similarity=0.206 Sum_probs=70.0
Q ss_pred hhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc--cC----CchHHHHHHHHHHHhCCC---CCccHHHHHHHHHHhC
Q 009663 228 FSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH--TG----MLQLGKVIHGYVYRNGLD---LDSFISNALIDMYGKC 298 (529)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 298 (529)
+++.+.+++.|.+. |++-+..+|.+....... .. ....+..+|+.|.+..+- ++...+..++.. ..
T Consensus 78 ~~~~~~~y~~L~~~---gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA---GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHh---ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cc
Confidence 34556677777766 777777666554333322 11 234566677777765442 222233333221 11
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH--HHHHHHHHHhCCCc--HHHHH
Q 009663 299 GSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV--TFISLLNACTHGGL--VEQGR 374 (529)
Q Consensus 299 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~ 374 (529)
++.+. -.+.++.+|+.+.+ .|+..+.. ....++..+..... ...+.
T Consensus 153 ~~~e~---------------------------l~~~~E~~Y~~L~~---~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~ 202 (297)
T PF13170_consen 153 EDVEE---------------------------LAERMEQCYQKLAD---AGFKKGNDLQFLSHILALSEGDDQEKVARVI 202 (297)
T ss_pred ccHHH---------------------------HHHHHHHHHHHHHH---hCCCCCcHHHHHHHHHHhccccchHHHHHHH
Confidence 12111 12455667777765 67665432 33333333322222 34677
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHH
Q 009663 375 AYFKLMTKTYRIEPQIEHYGCLVDL 399 (529)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~~~l~~~ 399 (529)
.+++.+.+. |+++....|..+.-.
T Consensus 203 ~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 203 ELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHc-CCccccccccHHHHH
Confidence 778888766 888776666655433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.89 E-value=45 Score=36.32 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=49.7
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
++.--+.|-+++|+.++..-.+.-...|.+....+.....+++|.-.|+..-+ ..-.+.+|...|+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk------------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK------------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc------------HHHHHHHHHHhccHH
Confidence 33333444555555544332222223444444444555555555555554321 122344455556666
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 372 QGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 66555554421 00000111234455555556666665555555
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.8 Score=37.34 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=38.3
Q ss_pred hCCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHHcCCHHHH
Q 009663 365 THGGLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGS-LLNGCKIYGRTDFA 441 (529)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~A 441 (529)
.....+..|+..|.+.. .+.|+. .-|..-+.++.+..+++.+..-..+. .+.|+..--.. +..+......+++|
T Consensus 21 f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred cchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33444555555555444 335543 33344444555555555554444333 44444333222 22334444555555
Q ss_pred HHHHHHHHh
Q 009663 442 EFAVKKLIE 450 (529)
Q Consensus 442 ~~~~~~~~~ 450 (529)
+..+.++..
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.74 E-value=9 Score=28.07 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009663 26 INHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMV 105 (529)
Q Consensus 26 ~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 105 (529)
-+++..|-+++...+-. ...+.-.=+..+..+| ++++|..+.+.+..||...|-+|-..-. |-.+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG-~Yq~Al~l~~~~~~pdlepw~ALce~rl---Gl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRG-DYQSALQLGNKLCYPDLEPWLALCEWRL---GLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccc-hHHHHHHhcCCCCCchHHHHHHHHHHhh---ccHHHHHHHHHHHH
Confidence 35667788877766533 3333333334456677 9999999999888899998887765543 66777777777787
Q ss_pred HCCCCCCCcchHH
Q 009663 106 RRGQPQPNQFIYP 118 (529)
Q Consensus 106 ~~~~~~~~~~~~~ 118 (529)
..| .|....|.
T Consensus 96 ~sg--~p~lq~Fa 106 (115)
T TIGR02508 96 ASG--DPRLQTFV 106 (115)
T ss_pred hCC--CHHHHHHH
Confidence 777 55554443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.45 E-value=15 Score=30.27 Aligned_cols=132 Identities=8% Similarity=0.031 Sum_probs=70.7
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CCHHHHHHHHhhC
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSG-NDIGIARKLFDEM 176 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~~A~~~~~~~ 176 (529)
++.++.+.+.++ +|+...+..+++.+.+.|.+... .+++..++-+|.......+-.+.... .-...|...+.++
T Consensus 14 lEYirSl~~~~i-~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNI-PVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 444555566676 77777888888888777765543 33445555555444333332221111 0122333444443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHh
Q 009663 177 SDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRM 238 (529)
Q Consensus 177 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 238 (529)
. ..+..++..+...|++-+|.++.++...-+...-..++.+..+.++...-..+|+-.
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 245566667777788888887777754443334445555555555544444444433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.37 E-value=0.91 Score=36.48 Aligned_cols=129 Identities=11% Similarity=0.162 Sum_probs=78.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRS 162 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (529)
++..+.+. +.+.....+++.+...+. ..+....+.++..|++.+..+...++++ ..+..-...++..|.+.
T Consensus 13 vi~~~~~~-~~~~~l~~yLe~~~~~~~-~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEER-NQPEELIEYLEALVKENK-ENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTT-T-GGGCTCCHHHHHHTST-C-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTT
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhccc-ccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhc
Confidence 46666666 888888899999987764 5667888899999999888788877776 11223345667777777
Q ss_pred CCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 009663 163 GNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLF 228 (529)
Q Consensus 163 g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 228 (529)
| -+++|.-++.++...+.. +..+...++++.|.+.+.+. ++...|..++..+...+..
T Consensus 84 ~-l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 84 G-LYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp T-SHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred c-hHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 7 777776665554321110 00011223333333333222 3567788888887766653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.78 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=13.3
Q ss_pred CccHHHHHHHHHHhCCCHHHHH
Q 009663 284 DSFISNALIDMYGKCGSLKEAR 305 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~ 305 (529)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.5 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.++..++.+|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999988654
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.3 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.++..++.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999998644
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.08 E-value=7.2 Score=35.25 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=70.2
Q ss_pred hCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-Ch-----hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC
Q 009663 279 NGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-RL-----TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP 352 (529)
Q Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p 352 (529)
.|.+....+...++..-....+++.++..+-+++.. +. .+-.+.++.+. .=++++++.++..=+. .|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIq---YGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQ---YGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcch---hcccc
Confidence 344445555666666666677888888887666542 11 12222233332 3356788888887777 99999
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
|.++++.+|..+.+.+++..|.++.-.+..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.98 E-value=20 Score=31.18 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCCHHHHH---HHHHH---HHHcCCHHHHHHHHHHHHhcCCC
Q 009663 396 LVDLLGRAGRFEEALEVVKGM---KIEPDEVVWG---SLLNG---CKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~---~l~~~---~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
....-+..+++.+|.++|++. ....+..-|. .++.+ +....+.-.+...+++..+++|.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 333445566667777776665 1122222121 11111 12224555566666666666665
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=86.68 E-value=1.8 Score=23.18 Aligned_cols=30 Identities=30% Similarity=0.200 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.|..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555556666666666666666665555
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=86.54 E-value=29 Score=33.00 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=50.8
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCCHHHHHHHHHHHhh
Q 009663 421 DEVVWGSL---LNGCKIYGRTDFAEFAVKKLIEIDPN-NGGYGIMLANIYG-ELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 421 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 484 (529)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||-.....++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 45678899999999999999999998 8887777777764 77889888888887665
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.46 E-value=44 Score=34.66 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQ-------IEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
-.+++..|...++.+.+...-.|+ +..+....-.+...|+.+.|+..|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 468888899999888754322222 2222222233456799999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.29 E-value=14 Score=36.66 Aligned_cols=98 Identities=17% Similarity=0.015 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHH
Confidence 4566666655544332 34456666666666666666666665542 1333444444555554444444
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 446 KKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 446 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
....+.+..|. -..+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 44444333222 12235556666666665543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.6 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 460 IMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467899999999999999999998654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.85 E-value=53 Score=35.07 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=26.8
Q ss_pred HHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC
Q 009663 17 LAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT 73 (529)
Q Consensus 17 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~ 73 (529)
..+++.-+.....+.+-+.+.+.+ -|..|+-.|...| ..++|+++|....
T Consensus 482 ~~llrlen~~c~vee~e~~L~k~~------~y~~Li~LY~~kg-~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 482 GPLLRLENNHCDVEEIETVLKKSK------KYRELIELYATKG-MHEKALQLLRDLV 531 (877)
T ss_pred hhhhhccCCCcchHHHHHHHHhcc------cHHHHHHHHHhcc-chHHHHHHHHHHh
Confidence 333333333334444444444432 2666667777666 7777777776654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.54 E-value=48 Score=34.31 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc-------hHHHHHHHHHHHhCCCCch
Q 009663 77 TYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES-------RGTKMVHTQIVKSGFEQYP 149 (529)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~ 149 (529)
...| .+|-.+.+. |++++|.++.......- ......+...+..+....+- +....-+++..+.....|+
T Consensus 112 ~p~W-a~Iyy~LR~-G~~~~A~~~~~~~~~~~--~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 112 DPIW-ALIYYCLRC-GDYDEALEVANENRNQF--QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp EEHH-HHHHHHHTT-T-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CccH-HHHHHHHhc-CCHHHHHHHHHHhhhhh--cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 3455 466677788 99999999996665543 56677888888888765332 2334444444443322233
Q ss_pred h--HHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHhhCC------CC
Q 009663 150 V--VETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVG-----------DIKNAASLFDSMP------DR 210 (529)
Q Consensus 150 ~--~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~------~~ 210 (529)
. ..-.++..|--..+... .+. .+.+-|--+=-.+++.. .+++..+.+.+.. ..
T Consensus 188 yK~AvY~ilg~cD~~~~~~~---~V~-----~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~ 259 (613)
T PF04097_consen 188 YKRAVYKILGRCDLSRRHLP---EVA-----RTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGS 259 (613)
T ss_dssp HHHHHHHHHHT--CCC-S-T---TC-------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHHHHHHHhcCCccccchH---HHh-----CcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccch
Confidence 2 11122211111110010 000 11111111111111111 1112222222211 11
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCC-CCCccHHH
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL-DLDSFISN 289 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 289 (529)
++..| ...+.-.|+++.|++++-... ....+.+.+...+.-+.-.+-.+... ..+..... .|...-+.
T Consensus 260 ~p~~Y---f~~LlLtgqFE~AI~~L~~~~-----~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 260 NPLLY---FQVLLLTGQFEAAIEFLYRNE-----FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFA 328 (613)
T ss_dssp ----H---HHHHHHTT-HHHHHHHHHT-------T-HHHHHHHHHHHHHTT---------------------------HH
T ss_pred hHHHH---HHHHHHHhhHHHHHHHHHhhc-----cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHH
Confidence 23333 344566899999999988733 55677777777776554333222211 22221111 11114466
Q ss_pred HHHHHHHh---CCCHHHHHHHHhhcC
Q 009663 290 ALIDMYGK---CGSLKEARRAFDRNS 312 (529)
Q Consensus 290 ~l~~~~~~---~g~~~~A~~~~~~~~ 312 (529)
.||..|.+ ..+..+|.++|--+.
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 77777775 457778888876554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.00 E-value=39 Score=32.75 Aligned_cols=119 Identities=10% Similarity=-0.056 Sum_probs=82.7
Q ss_pred HccCcchH-HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHH
Q 009663 22 RCNHINHL-KQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSA 97 (529)
Q Consensus 22 ~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a 97 (529)
..|+...+ ++++..+......|+....... .+...| +++.+...+.... .....+-..+++..... |+++.|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg-~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l-~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLG-YYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL-ARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhh-hHHHHHHHhhchhhhhcCCchHHHHHHHhhhch-hhHHHH
Confidence 34666665 6788888776556655544433 345566 9999999887654 35556777888888888 999999
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCC
Q 009663 98 FSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE 146 (529)
Q Consensus 98 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 146 (529)
..+-+-|....+ .+++.........-..|-++++.-.++++...+.+
T Consensus 377 ~s~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999999988765 34444433334445667788888888888766543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.95 E-value=13 Score=33.39 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhHHHHHhh-----cCCCCChhHHHHHHHHHhc-CCCChHHHHHHHHHHHHC--CCCCCCcchHHHHHHhCccCCCchHH
Q 009663 62 LTYARFIFD-----HLTTPNTYLYTAMITAYAS-QPAHASSAFSLYRDMVRR--GQPQPNQFIYPHVLKSCPDVLESRGT 133 (529)
Q Consensus 62 ~~~A~~~~~-----~~~~~~~~~~~~ll~~~~~-~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (529)
+.+|+++|+ +-.-.|...-..+++.... .+.....-.++.+-+... + .++..+...++..+++.+++...
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~--~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSK--SLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcccc--CCChhHHHHHHHHHHhcccHHHH
Q ss_pred HHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCCHHHHHHHHhh
Q 009663 134 KMVHTQIVKS-GFEQYPVVETALVNSYSRSGNDIGIARKLFDE 175 (529)
Q Consensus 134 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~ 175 (529)
.++++..... ++..|...|..++......| |..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg-D~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESG-DQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcC-CHHHHHHHhhC
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.59 E-value=9.5 Score=28.10 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVD 398 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (529)
+..+-++.+.. ..+.|+.....+.+++|.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~---~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG---YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT---SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhc---cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 44455555554 77888888899999999999999999999998876543 33336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=55 Score=34.02 Aligned_cols=209 Identities=8% Similarity=-0.148 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK--R-LTSWNSMINSFALHGQSENSICVFEEM 342 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m 342 (529)
.+.+...+....... .+......-+....+.++++.+...+..|... . ..-.-=+..++...|+.++|..+|+.+
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444433221 23334444455555667777776666666432 1 112222345555567777777777766
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhCCCcHHHH-HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTHGGLVEQG-RAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPD 421 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 421 (529)
.. . .+|..++.+- +.|..-.- ......... .+..+ .-..-+..+...|+...|...+..+....+
T Consensus 373 a~------~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~--~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~ 438 (644)
T PRK11619 373 MQ------Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDS--ALTQG--PEMARVRELMYWNMDNTARSEWANLVASRS 438 (644)
T ss_pred hc------C---CCcHHHHHHH-HcCCCCCCCCCCCCchhh--hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 32 1 1233322211 11211000 000000000 00000 111234456677888888888877622355
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccC
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID---PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKT 490 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 490 (529)
......+.....+.|.++.++....+....+ -.-|..|...+..+.+.-..+.++-.--.-.+.++.|.
T Consensus 439 ~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 439 KTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 5566666666677888888887776543311 01123344455555555556665543333335555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.24 E-value=8 Score=34.96 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=66.1
Q ss_pred hCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCC-CCh-----hHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCC
Q 009663 39 LGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTT-PNT-----YLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQP 112 (529)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 112 (529)
.|.+.+..+...++-...... .++.+...+-.+.+ |+. .+-.+.++.+.+ -++++++.++..=+..|+ -|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk--y~pq~~i~~l~npIqYGi-F~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK--YDPQKAIYTLVNPIQYGI-FP 133 (418)
T ss_pred cCCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc--cChHHHHHHHhCcchhcc-cc
Confidence 455666666666666666555 77777776665542 221 111223333333 366778888777777787 78
Q ss_pred CcchHHHHHHhCccCCCchHHHHHHHHHHHhC
Q 009663 113 NQFIYPHVLKSCPDVLESRGTKMVHTQIVKSG 144 (529)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (529)
|.++++.+|..+.+.+++..|.++...|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877777776654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.02 E-value=5.2 Score=34.12 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+.-+..+.+.+.+.+++...+.- +-+| |...-..++..++-.|++++|..-++-+-++.|+.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566677888888888887765 4455 55556667788888999999999888888888854
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.36 E-value=10 Score=27.61 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.+-|++.+..+-+.+|.+.+++..|+++++-.+.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5667777777777777777777777777776664
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.99 E-value=11 Score=27.77 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 416 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
+.+-|++.+..+.+.+|.+.+++..|+++++-++..-.+....|-.+
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 35678888888888888888888888888888776544333344443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.90 E-value=12 Score=27.36 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 333 ENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 333 ~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
-++.+-++.+.. ..+.|+.....+.+++|.+.+++..|.++|+-++.+.| .+...|..++
T Consensus 24 we~rr~mN~l~~---~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFG---YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhc---cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 344455555544 67788888888888888888888888888887764422 2344555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.66 E-value=7.7 Score=32.09 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC----CHHHHHHHHHHH
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG----KWDEVRKVRKML 482 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~ 482 (529)
-+++|+.-|++++.++|+...++..++.+|...+ +..+|..+|++.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3567888888889999999999999999987654 333444444444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.34 E-value=53 Score=32.27 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.+.+....+..++.+..|..--...+..+-..|....++++|++++..+
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 4555566666666655555555556666666677777777777777755
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.21 E-value=5 Score=33.86 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHhcCCHHHH
Q 009663 129 ESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-------RNVVSWTAMISGYTRVGDIKNA 200 (529)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~g~~~~A 200 (529)
.-+.|.+.|-.+...+.--++.....|...|.+. |.+++..++.+..+ +|+..+.+|+..+.+.|+.+.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr--D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKR--DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4467788888887777666777777777777754 58888888766543 4566677777777777776665
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=82.16 E-value=12 Score=32.46 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCHH-------HHHHHHHHHHhcC--CC----CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 425 WGSLLNGCKIYGRTD-------FAEFAVKKLIEID--PN----NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+..+...|...|+.+ .|.+.|+++.+.. |. ...+...++....+.|+.++|.+.|.++...+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 334444455566543 4455555555422 22 3456777888888999999999999888766543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.11 E-value=53 Score=32.14 Aligned_cols=240 Identities=8% Similarity=-0.011 Sum_probs=130.1
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC------CchHHHHHHHHHHHhCC-C-CCccHHHHHHHHHHhCCC
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG------MLQLGKVIHGYVYRNGL-D-LDSFISNALIDMYGKCGS 300 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~ 300 (529)
+....+|++.. ..-|+...+...|..|...- .+.....+++...+.+. . .....|..+.-.++....
T Consensus 299 s~~~~v~ee~v-----~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~ 373 (568)
T KOG2396|consen 299 SRCCAVYEEAV-----KTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE 373 (568)
T ss_pred HHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch
Confidence 34456666665 33556666666666554332 33344445555444332 1 223345555555555554
Q ss_pred HH-HHHHHHhhcCCCChhHHHHHHHHHHHc-CChhH-HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc-HHHH--H
Q 009663 301 LK-EARRAFDRNSKKRLTSWNSMINSFALH-GQSEN-SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL-VEQG--R 374 (529)
Q Consensus 301 ~~-~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~-a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a--~ 374 (529)
.. -|..+..+....+...|..-+...... .++.- -.+++..... .-..+-...|+... .++ .... .
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~---~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRK---QVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH---HhcchhHHHHHHHh-----hccchhHHHHH
Confidence 33 344444455555555555444443322 12221 1222333322 22223333333333 122 1111 1
Q ss_pred HHHHHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 009663 375 AYFKLMTKTYRIEPQIEHY-GCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGC--KIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 375 ~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 449 (529)
.++..+.+ -..|+..++ +.+++-+.+.|-..+|...+... .. +|+...+..++..- ...-+..-+..+|+.+.
T Consensus 446 ~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 22333332 224554443 66788888999999999999888 23 44777788777642 22334788889999998
Q ss_pred hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 450 EIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 450 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.-.-.++..|......-...|..+.+-.++.+..
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 7443688888887777778898888888766654
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.69 E-value=17 Score=35.95 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPN-NGGYGIMLANIYG-ELGKWDEVRKVRKML 482 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 482 (529)
+..+.+.|-+..|.++.+-+.+++|. ||-....+++.|+ ++.+|.=.+++++..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456677777777777777777776 6766666666664 556676666666666
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.38 E-value=5.5 Score=39.20 Aligned_cols=97 Identities=18% Similarity=0.067 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFA 441 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 441 (529)
..|+...|...+..+. ...| .....-.|.+...+.|-..+|-.++.+. .+ ...+.++..+..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3577777877777665 3345 2334455666666777777777766554 22 33466777778888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHH
Q 009663 442 EFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 442 ~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
++.|+.+.+..|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888888887777666544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.05 E-value=59 Score=31.97 Aligned_cols=176 Identities=12% Similarity=0.085 Sum_probs=115.8
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHH-
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKK--RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFI- 358 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~- 358 (529)
..|.....+++..+..+-++.-.+.+..+|..- +-..|..++.+|..+ ..+.-..+|+++.+ .. -|...+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve---~d--fnDvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE---YD--FNDVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH---hc--chhHHHHH
Confidence 345566677888888888888888888777643 445788888888887 55777888888765 32 2333333
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHH
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ------IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPDEVVWGSL 428 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l 428 (529)
.|..-|.+ ++.+.+..+|.++..+ +-|. ...|..|...- ..+.+..+.+...+ +...-...+.-+
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 34444444 7778888888887653 2331 22444443321 34566666666665 333345555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
-.-|....++++|++++..+++.+..+..+.-.++.-+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 6678888999999999999999887777766666665544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.46 E-value=15 Score=31.22 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=24.7
Q ss_pred cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 329 HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 329 ~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
..+.+++..++.+..++.+.+-.+|...+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555665555555443344445555555666666555555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 7e-12
Identities = 76/560 (13%), Positives = 157/560 (28%), Gaps = 148/560 (26%)
Query: 5 TNQLNQTLNQQVLAILER-------CNHINHLKQLQSFLTT------LGQSQTNFYAFKL 51
T + Q + +L++ E C + +S L+ + +L
Sbjct: 11 TGEH-QYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 52 VRFCTLKLSNL-TYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQP 110
F TL +F+ + L +L + + T QP+ + + RD +
Sbjct: 68 --FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYND-- 122
Query: 111 QPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVE-------TALVNSYSRSG 163
NQ + + L+ R ++ + +++ T +
Sbjct: 123 --NQVFAKYNVSRLQPYLKLRQ----ALLELRP--AKNVLIDGVLGSGKTWVALDVCL-- 172
Query: 164 NDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCT 223
+ K+ + + W ++ + + + ++ + +
Sbjct: 173 -SYKVQCKMDFK------IFW---LN----LKNCNSPETVLEML---------------- 202
Query: 224 QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGL-D 282
Q L + + S NI+ ++ L L K Y N L
Sbjct: 203 QK-LLYQIDPNWTSRS-DHSSNIKLRIHSIQAELR------RLLKSKP-----YENCLLV 249
Query: 283 LDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSF-----ALHGQSENSIC 337
L + + N +A AF+ + K LT+ + F H ++
Sbjct: 250 LLN-VQN------------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 338 VFEEM-----------MRCQD-----HNIRPDGVTFISLLNACTHGGLVEQGRA---YFK 378
R QD P +S++ + G A +K
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLSII-----AESIRDGLATWDNWK 348
Query: 379 LMTKTYRIEPQIEH-YGCLVDLLGRAGRFEEALEV-VKGMKIEPD--EVVWGSLLNGCKI 434
++ IE L R F+ L V I ++W ++
Sbjct: 349 -HVNCDKLTTIIESSLNVLEPAEYRK-MFDR-LSVFPPSAHIPTILLSLIWFDVIKSDV- 404
Query: 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL-GKWDEVRKVRKMLKDR----NAYK 489
+ L+E P I +IY EL K + + + + D +
Sbjct: 405 --MVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 490 TPGCSWIEVDKQVHQF---H 506
+ +D+ + H
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH 480
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 57/303 (18%), Positives = 108/303 (35%), Gaps = 49/303 (16%)
Query: 195 GDIKNAASLFDSM----PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ 250
GD + A + PD + + + Q + F + P
Sbjct: 13 GDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTL-----AIKQNPL- 65
Query: 251 VTLVCALSAIGHTGMLQLGKV---IHGYVYRNGLDLDSFISNALIDM---YGKCGSLKEA 304
L A S +G+ + G++ I YR+ L L + I++ G ++ A
Sbjct: 66 --LAEAYSNLGNV-YKERGQLQEAIE--HYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 305 RRAFDR----NSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFIS 359
+A+ N + + N G+ E + + + + +P+ V + +
Sbjct: 121 VQAYVSALQYNPDL-YCVRSDLGNLLKALGRLEEAKACYLKAIE-----TQPNFAVAWSN 174
Query: 360 LLNACTHGGLVEQGR-----AYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEV- 412
L QG +F+ K ++P ++ Y L ++L A F+ A+
Sbjct: 175 LGCV-----FNAQGEIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 413 VKGMKIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471
++ + + P+ VV G+L G D A ++ IE+ P+ LAN E G
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 472 WDE 474
E
Sbjct: 287 VAE 289
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 49/309 (15%), Positives = 110/309 (35%), Gaps = 53/309 (17%)
Query: 191 YTRVGDIKNAASLFDS----MPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNI 246
+ + + +A P A++++ + G +AI +R + +
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRH-----ALRL 96
Query: 247 RPNQVT----LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNA---LIDMYGKCG 299
+P+ + L AL A G + + Y + L + + L ++ G
Sbjct: 97 KPDFIDGYINLAAALVAAG-----DMEGAVQ--AYVSALQYNPDLYCVRSDLGNLLKALG 149
Query: 300 SLKEARRAFDRNSKKR---LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--- 353
L+EA+ + + + + +W+++ F G+ +I FE+ + + P+
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----LDPNFLD 204
Query: 354 -----GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDLLGRAGRFE 407
G + ++ A + + + P +G L + G +
Sbjct: 205 AYINLGNVLKEA-------RIFDRAVAAYL---RALSLSPNHAVVHGNLACVYYEQGLID 254
Query: 408 EALEV-VKGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANI 465
A++ + ++++P + +L N K G AE + + P + LANI
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Query: 466 YGELGKWDE 474
E G +E
Sbjct: 315 KREQGNIEE 323
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 12/119 (10%)
Query: 368 GLVEQGRAYFK---------LMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVV-KGM 416
G +E ++ + +R EP L + + R + + +
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 417 KIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
K P + +L N K G+ A + + + P+ I LA G +
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 48/272 (17%)
Query: 224 QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKV---IHGYVYRNG 280
Q G F A ++ P+ L + Q ++ H
Sbjct: 11 QAGDFEAAERHCMQLW-----RQEPDNTG---VLLLLSSI-HFQCRRLDRSAH--FSTLA 59
Query: 281 LDLDSFISNALIDM---YGKCGSLKEARRAFDRNSKKR---LTSWNSMINSFALHGQSEN 334
+ + ++ A ++ Y + G L+EA + + + + + ++ + G E
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 335 SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLM---------TKTYR 385
++ + ++ PD C L G L K
Sbjct: 120 AVQAYVSALQ-----YNPD--------LYCVRSDL---GNLLKALGRLEEAKACYLKAIE 163
Query: 386 IEPQ-IEHYGCLVDLLGRAGRFEEALEV-VKGMKIEPDEV-VWGSLLNGCKIYGRTDFAE 442
+P + L + G A+ K + ++P+ + + +L N K D A
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 443 FAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
A + + + PN+ LA +Y E G D
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 49/310 (15%), Positives = 107/310 (34%), Gaps = 55/310 (17%)
Query: 191 YTRVGDIKNAASLFDSM----PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNI 246
Y G ++ A + PD + + ++ A G A+ + +
Sbjct: 77 YKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVS-----ALQY 130
Query: 247 RPNQVTLVCALSAIGHTGMLQLGKV---IHGYVYRNGLDLDSFISNALIDM---YGKCGS 300
P+ L C S +G+ + LG++ Y ++ + A ++ + G
Sbjct: 131 NPD---LYCVRSDLGNL-LKALGRLEEAKA--CYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 301 LKEARRAFDR----NSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT 356
+ A F++ + L ++ ++ N + ++ + + + P+
Sbjct: 185 IWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALS-----LSPN--- 235
Query: 357 FISLLNACTHGG----LVEQGR-----AYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRF 406
+A HG EQG ++ + ++P + Y L + L G
Sbjct: 236 -----HAVVHGNLACVYYEQGLIDLAIDTYR---RAIELQPHFPDAYCNLANALKEKGSV 287
Query: 407 EEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464
EA + +++ P +L N + G + A +K +E+ P LA+
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347
Query: 465 IYGELGKWDE 474
+ + GK E
Sbjct: 348 VLQQQGKLQE 357
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 1e-06
Identities = 26/231 (11%), Positives = 67/231 (29%), Gaps = 10/231 (4%)
Query: 300 SLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEM-MRCQDHNIRPDGVTFI 358
S + A D + + W + + S+ V + + + +
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 359 SLLNACTHGGLVEQGRAYFKLMT--KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416
+ C + + + R ++ Y ++ R G F+E + V+ +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 417 K---IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI-EIDPNNGGYGIMLANIYGELGKW 472
K + PD + + + L GR D +++ + ++ + +
Sbjct: 192 KDAGLTPDLLSYAAALQC---MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 473 DEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALE 523
V K +K + + K + ++ D +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 24/224 (10%), Positives = 52/224 (23%), Gaps = 48/224 (21%)
Query: 178 DRNVVSWTAMISGYTRVGDIKNAASLFDSMPDR-------DVPAWNSVIAGCTQNGLFSD 230
A + A L + + +N+V+ G + G F +
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 231 AISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNA 290
+ + + P+ ++ Y A
Sbjct: 184 LVYVLFMV---KDAGLTPDLLS------------------------Y-----------AA 205
Query: 291 LIDMYGKCGSLKEA-RRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMM--RCQD 347
+ G+ R ++ S++ L + ++
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 348 HNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE 391
+ P T L + G V + + L T E Q+
Sbjct: 266 PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 30/208 (14%), Positives = 70/208 (33%), Gaps = 8/208 (3%)
Query: 275 YVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDR---NSKKRLTSWNSMINSFALHGQ 331
+ G+ L++ + +Y + A+ + K +++ ++++ L
Sbjct: 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249
Query: 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE 391
E + + + ++ LN +H + + Y +E +
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS---SINGLEKSSD 306
Query: 392 HYGCLVDLLGRAGRFEEALEV-VKGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLI 449
C D L RF + L + K ++I+P + V+ L G + L+
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366
Query: 450 EIDPNNGGYGIMLANIYGELGKWDEVRK 477
+ P + + Y + K E R+
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARR 394
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 41/320 (12%), Positives = 96/320 (30%), Gaps = 55/320 (17%)
Query: 184 WTAMISGYTRVGDIKNAASLF---DSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGM 240
+ ++ + +++ A + + F D ++ ++ +
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEK-SSDLLLCKADTLFVRSRFIDVLAITTKI-L 332
Query: 241 EVSDNIRPNQVTLVCALSAI-GHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDM---YG 296
E I P + + A +G K+ + + +D + + + Y
Sbjct: 333 E----IDPYNLDVYPLHLASLHESGEKN--KLY--LISNDLVDRHPEKAVTWLAVGIYYL 384
Query: 297 KCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD 353
+ EARR F ++S + +W +SFA+ G+ + +I + R +
Sbjct: 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR-----LFQG 439
Query: 354 GVTFISLLNACTHGGLVEQGRAYFKL---------MTKTYRIEPQ-IEHYGCLVDLLGRA 403
+ L G + +L + +Y + L +
Sbjct: 440 --------THLPYLFL---GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK 488
Query: 404 GRFEEALE--------VVKGMKIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454
+ A+ V K E W +L + + D A A+ + + + N
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
Query: 455 NGGYGIMLANIYGELGKWDE 474
+ +A +Y
Sbjct: 549 DANVHTAIALVYLHKKIPGL 568
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 17/185 (9%), Positives = 46/185 (24%), Gaps = 15/185 (8%)
Query: 297 KCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT 356
K D K + + + + ++E + +
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM-----VDAK--- 232
Query: 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE------HYGCLVDLLGRAGRFEEAL 410
+ L+ + ++ Y + + Y ++ A
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292
Query: 411 EVVKGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469
+ + + + + + R K++EIDP N + E
Sbjct: 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352
Query: 470 GKWDE 474
G+ ++
Sbjct: 353 GEKNK 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 384 YRIEPQIEHYGCLVDLLGRAGRFEEALEV-VKGMKIEPD--EVVWGSLLNGCKIY---GR 437
Y+ ++ + L R GR+ +A MK EP E S C + +
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287
Query: 438 TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
A ++++++P+N A Y +DE
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 16/195 (8%)
Query: 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL-NACTHGGLVEQGRAY 376
S N++ N G E ++ ++ + + + P+ S L + G +++ +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 377 FKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEV-VKGMKIEPDEV-VWGSLLNGCK 433
+K + RI P + Y + + L + AL+ + ++I P +L + K
Sbjct: 66 YK---EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122
Query: 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGC 493
G A + + +++ P+ LA+ + W + + K L
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV----ADQ 178
Query: 494 SWIEVDKQVHQFHSL 508
VH HS+
Sbjct: 179 LEKNRLPSVHPHHSM 193
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 18/139 (12%), Positives = 43/139 (30%), Gaps = 25/139 (17%)
Query: 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVV-KG 415
+ L G +G + + P + R ++A+E++ K
Sbjct: 217 LKLHKMREEGEEEGEGEKLVE---EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273
Query: 416 MKIEPD--------------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455
++ P+ + + K+ A +KK E + N
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333
Query: 456 GGYGIMLANIYGELGKWDE 474
+LA+++ +++E
Sbjct: 334 FRVCSILASLHALADQYEE 352
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 20/183 (10%)
Query: 311 NSKKRLTSWNSMINSFALHGQSENSICVF---EEMMRCQDHNIRPDG---VTFISLLNAC 364
N + + T N + L GQ+E ++ EE+++ Q+H + + VT+ +
Sbjct: 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ-QEHADQAEIRSLVTWGNYAWVY 104
Query: 365 THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA--------GRFEEALEV-VKG 415
H G + + Y + + E A K
Sbjct: 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164
Query: 416 MKIEPDEVVW----GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471
++ +P + + + A +++ I ++P+N ++LA ++ +
Sbjct: 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224
Query: 472 WDE 474
E
Sbjct: 225 EGE 227
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 387 EPQIEHYGCLVDLLGRAGRFEEALEV-VKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAV 445
Q+ H L + ++A+ ++G+KI + + +
Sbjct: 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD---------KLQKIA 419
Query: 446 KKLIEIDPNNGGYGIMLANIYGELGKWDE 474
K + + + +LA + K +
Sbjct: 420 KMRLSKNGADSEALHVLAFLQELNEKMQQ 448
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-05
Identities = 38/264 (14%), Positives = 77/264 (29%), Gaps = 14/264 (5%)
Query: 226 GLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS 285
G + I+ +R+ + V L A A + G V+ + +L +
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQR-----KYGVVLDEIKPSSAPELQA 67
Query: 286 FISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRC 345
+ DR + + N+ A +
Sbjct: 68 V--RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 346 QDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR 405
Q ++ + + ++ R K M + V L +
Sbjct: 126 QGDSLECMAM----TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181
Query: 406 FEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463
++A + + M K P ++ GR + AE +++ ++ D + I L
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241
Query: 464 NIYGELGKWDE-VRKVRKMLKDRN 486
+ LGK E + LKD +
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAH 265
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 385 RIEPQ-IEHYGCLVDLLGRAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRTDFA 441
R PQ + L D G V +G+ + P L R A
Sbjct: 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEA 76
Query: 442 EFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
+++ + P + G + L + + G+ +
Sbjct: 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 399 LLGRAGRFEEALEV-VKGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456
+ + ++ EAL+ + + + P + ++ + G + A + + ++
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304
Query: 457 GYGIMLANIYGELGKWDE 474
ML + E
Sbjct: 305 FSVTMLGHCIEMYIGDSE 322
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 20/193 (10%), Positives = 51/193 (26%), Gaps = 34/193 (17%)
Query: 299 GSLKEARRAFDR---NSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-- 353
K + + I + ++ + +++ ++ P
Sbjct: 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV-----DLYPSNP 90
Query: 354 ------GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA---- 403
G ++ + G E R Y K +E YG G +
Sbjct: 91 VSWFAVGCYYLMV------GHKNEHARRYLS---KATTLEK---TYGPAWIAYGHSFAVE 138
Query: 404 GRFEEALEV-VKGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461
++A+ ++ + + + AE + + I P +
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198
Query: 462 LANIYGELGKWDE 474
+ + + G+W
Sbjct: 199 VGVVAFQNGEWKT 211
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 376 YFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCK 433
Y+ + K I ++ L + +++A + ++ P+ V +
Sbjct: 42 YWTNVDKNSEISSKL--ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99
Query: 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
G+ A +K+++++ +N I L N Y + ++
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 12/119 (10%)
Query: 382 KTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRT 438
+ + P ++ ++ G+ ++AL + K +++E D + L G Y
Sbjct: 79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL--GNYYYLTA 136
Query: 439 DFAEFAVK---KLIEIDPNNGGYGIMLANIYGELGKWDEV----RKVRKMLKDRNAYKT 490
+ + ++ K + ++++ +KV A KT
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/160 (12%), Positives = 38/160 (23%), Gaps = 12/160 (7%)
Query: 319 WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYF 377
S + + V CQ H + P V S V++
Sbjct: 75 IASHDGGKQALETVQRLLPVL-----CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 378 KLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEV-VKGMKIEPDEVV-WGSLLNGCKI 434
+ + + P Q+ + L V + + P++VV S G +
Sbjct: 130 ---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQA 186
Query: 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
+ + + P L
Sbjct: 187 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 382 KTYRIEPQ------IEHYGCLVDLLGRAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCK 433
K Y+ E + + + + L + G A+ + ++ +P + W L
Sbjct: 51 KGYQFEEENPLRDHPQPFEEGLRRL-QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109
Query: 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
+ A A+++ +E+ P+N + LA + +
Sbjct: 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 150
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 400 LGRAGRFEEALEV-VKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY 458
G ++A + + +E + +L GR D A K +E P +
Sbjct: 128 YALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187
Query: 459 GIMLANIYGELGKWDE 474
+ A+ GK +E
Sbjct: 188 RVRYASALLLKGKAEE 203
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 382 KTYRIEPQI--EHYGCLVDL---LGRAGRFEEALEVV-KGMKIEPDEV-VWGSLLNGCKI 434
K Y + + + + + G + + + +P + W L
Sbjct: 52 KGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAE 111
Query: 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474
A A+++ +E+ PNN + LA Y +
Sbjct: 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 7/134 (5%)
Query: 345 CQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGR 402
CQ H + P V S +++ + + + P Q+ +
Sbjct: 216 CQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL---CQAHGLPPDQVVAIASNIGGKQA 272
Query: 403 AGRFEEALEV-VKGMKIEPDEVV-WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460
+ L V + + PD+VV S G + + + + P+
Sbjct: 273 LETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 332
Query: 461 MLANIYGELGKWDE 474
L
Sbjct: 333 SHDGGKQALETVQR 346
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 8e-04
Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 399 LLGRA----GRFEEALEV-VKGMKIEPDEVV----WGSLLNGCKIYGRTDFAEFAVKKLI 449
LLG + +L + +++ + ++L T + K +
Sbjct: 49 LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108
Query: 450 EIDPNNGGYGIMLANIYGELGKWDEVRKV-RKMLK 483
+D N ++LA+ + + ++ +K++
Sbjct: 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.06 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.99 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.9 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.9 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.76 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.73 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.71 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.63 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.57 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.44 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.42 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.38 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.38 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.36 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.35 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.31 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.22 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.2 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.05 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.98 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.98 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.91 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.87 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.68 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.48 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.45 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.33 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.29 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.28 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.26 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.01 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.99 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.92 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.59 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.41 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.59 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.49 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.02 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.45 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.41 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.01 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.94 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.29 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.8 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.51 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.46 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.43 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.04 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.89 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.28 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.05 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 88.42 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 85.51 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.09 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.97 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.79 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.17 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.01 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.46 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 83.14 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.71 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.81 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 81.79 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=323.66 Aligned_cols=427 Identities=11% Similarity=0.060 Sum_probs=373.4
Q ss_pred CchhHHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHH
Q 009663 43 QTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHV 120 (529)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 120 (529)
+++..++.++..|.+.| ++++|..+|+++. .|+..++..++..+... |++++|+.+|+.+... +++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT-GDYARAKCLLTKEDLY---NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TCHHHHHHHHHHTCGG---GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhCCCchHHHHHHHHHHHc-CcHHHHHHHHHHHhcc---ccchhHHHHH
Confidence 57788999999999999 9999999999885 57888899999999999 9999999999988654 6788899999
Q ss_pred HHhCccCCCchHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CC-hh
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKS---------------GFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RN-VV 182 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~-~~ 182 (529)
+.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.| ++++|.++|+++.. |+ ..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCchhhH
Confidence 99999999999999999853211 12335789999999999999 99999999999875 32 22
Q ss_pred hHHH--------------------------------------HHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHH
Q 009663 183 SWTA--------------------------------------MISGYTRVGDIKNAASLFDSMPD--RDVPAWNSVIAGC 222 (529)
Q Consensus 183 ~~~~--------------------------------------ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 222 (529)
.+.. ++..|.+.|++++|.++|+++.+ ++..+|+.++..|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3322 24556678999999999999987 7899999999999
Q ss_pred HhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHH
Q 009663 223 TQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLK 302 (529)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 302 (529)
.+.|++++|+++|+++... + +.+..++..++.++.+.|++++|..+++.+.+..+ .+..+++.++.+|.+.|+++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~---~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEI---D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH---C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHHc---C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999854 2 33667889999999999999999999999997653 47788999999999999999
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 303 EARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 303 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
+|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+ . .+.+..++..++.+|.+.|++++|.++|++
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR---L-FQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---T-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-CccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999864 34677999999999999999999999999975 3 334778999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 380 MTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 380 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
+.+.. +.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+
T Consensus 467 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 467 SYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 98642 346889999999999999999999999988 44777 78999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=314.06 Aligned_cols=437 Identities=7% Similarity=-0.049 Sum_probs=378.8
Q ss_pred HHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcC--CCCChhHHHHHHHHHhcCCC
Q 009663 15 QVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHL--TTPNTYLYTAMITAYASQPA 92 (529)
Q Consensus 15 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~ 92 (529)
.+...+...++.+++..+++.+.+. .|+..++..++..|.+.| ++++|..+|+.+ .+++..+|+.++..+.+. |
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 164 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCLVKL-Y 164 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHHHHH-h
Confidence 3444445568889999999999854 567788899999999999 999999999998 478899999999999999 9
Q ss_pred ChHHHHHHHHHHHHC---------------CCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHH---
Q 009663 93 HASSAFSLYRDMVRR---------------GQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETA--- 154 (529)
Q Consensus 93 ~~~~a~~~~~~m~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--- 154 (529)
++++|+.+|+++... +. +++..+|+.++.+|.+.|++++|.++|+++.+.++. +...+..
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHhccCCcccccccccccccccccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 999999999953222 11 235789999999999999999999999999987643 3333332
Q ss_pred -----------------------------------HHHHHHhcCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCH
Q 009663 155 -----------------------------------LVNSYSRSGNDIGIARKLFDEMSD--RNVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 155 -----------------------------------l~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~ 197 (529)
++..|.+.| ++++|.++|+++.. ++..+|+.++.+|.+.|++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED-ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH-HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence 255666789 99999999999998 7999999999999999999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHH
Q 009663 198 KNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHG 274 (529)
Q Consensus 198 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 274 (529)
++|.++|+++.+ .+..+|..++.+|.+.|++++|.++++++... .+.+..++..++..+.+.|++++|..+|+
T Consensus 322 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999853 46788999999999999999999999999743 35578899999999999999999999999
Q ss_pred HHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC
Q 009663 275 YVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR 351 (529)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 351 (529)
++.+..+ .+..+++.++.+|.+.|++++|+++|+++. ..+..+|..++.+|.+.|++++|.++|+++.+ . .+
T Consensus 398 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~ 472 (597)
T 2xpi_A 398 KSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA---L-FQ 472 (597)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---H-CC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-CC
Confidence 9998754 367799999999999999999999999764 34677999999999999999999999999975 3 23
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTY---RIEPQ--IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVV 424 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 424 (529)
.+..+|..++..+.+.|++++|..+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++ ...| +..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 467899999999999999999999999997542 55776 789999999999999999999999998 3345 7899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
|..++.+|.+.|++++|.+.++++.+++|+++..+..++.+|.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=229.95 Aligned_cols=370 Identities=12% Similarity=0.059 Sum_probs=287.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC
Q 009663 86 AYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND 165 (529)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 165 (529)
.+.+. |++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.| +
T Consensus 8 ~~~~~-g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g-~ 82 (388)
T 1w3b_A 8 REYQA-GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG-Q 82 (388)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-C
T ss_pred HHHHC-CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC-C
Confidence 34445 77777777777777664 4455556666666777777777777777777654 446677777777777777 7
Q ss_pred HHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 166 IGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 166 ~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
+++|.+.|+++.. | +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888777777654 3 345677777777777888888777777543 3 34567777788888888888888888887
Q ss_pred hcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCCh
Q 009663 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRL 316 (529)
Q Consensus 240 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 316 (529)
.. .+.+..++..+..++...|++++|...|+++.+.++. +...+..+...+...|++++|...|++.. ..+.
T Consensus 163 ~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 163 ET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred Hh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 43 2334667788888888888888888888888887643 56677888888888999999988887653 3456
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCL 396 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 396 (529)
.++..+..++...|++++|+..|+++.+ . .+.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 311 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---L-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---T-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHH
Confidence 6888899999999999999999999875 2 1224667888889999999999999999999864 24468889999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
...+.+.|++++|.+.++++ ...| +..++..++..+.+.|++++|...++++.+..|+++.++..++.++...|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999987 5555 578889999999999999999999999999999999999999998877764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=222.95 Aligned_cols=349 Identities=13% Similarity=0.080 Sum_probs=304.9
Q ss_pred HHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCH
Q 009663 121 LKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDI 197 (529)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~ 197 (529)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...| ++++|...++.... .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667899999999999998875 335667778888999999 99999999988765 4667899999999999999
Q ss_pred HHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-HHHHHHHHHHhhccCCchHHHHHH
Q 009663 198 KNAASLFDSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-QVTLVCALSAIGHTGMLQLGKVIH 273 (529)
Q Consensus 198 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 273 (529)
++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++... .|+ ...+..+...+...|++++|...|
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999998753 3 5668999999999999999999999999843 554 445667777889999999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 274 GYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
+++.+..+. +..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..+++... .
T Consensus 159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~ 232 (388)
T 1w3b_A 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS-----L 232 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH-----H
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----h
Confidence 999987643 567889999999999999999999998653 3556899999999999999999999999865 3
Q ss_pred CC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHH
Q 009663 351 RP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-K-IEPDEVVWG 426 (529)
Q Consensus 351 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~ 426 (529)
.| +..++..+..++...|++++|...|+++.+. .| ++.+|..+...+.+.|++++|.+.|+++ . .+.+..++.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 34 5678889999999999999999999999853 45 5788999999999999999999999998 3 345788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+...+...|++++|+..++++.+..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999865
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=232.95 Aligned_cols=184 Identities=10% Similarity=0.111 Sum_probs=165.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCC---------chHHHHHHHHHHHhCCCC
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGM---------LQLGKVIHGYVYRNGLDL 283 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~ 283 (529)
..++.+|.+|++.|++++|+++|++|... |+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN---GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 35788899999999999999999999887 999999999999999887654 577899999999999999
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNS----KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
|..+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..||++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~G~~Pd~~ty~~ 180 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE---SEVVPEEPELAA 180 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCCHHHHHH
Confidence 99999999999999999999999998875 46888999999999999999999999999998 999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA 403 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (529)
+|.+|++.|++++|.+++++|.+. |+.|+..||+.++..|+..
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999876 9999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=228.67 Aligned_cols=199 Identities=12% Similarity=0.118 Sum_probs=172.2
Q ss_pred HHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC--------
Q 009663 230 DAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS-------- 300 (529)
Q Consensus 230 ~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 300 (529)
.+..+.+++.+. +..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k---~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 8 PSENLSRKAKKK---AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred hHHHHHHHHHHh---cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 344555666544 555443 46888999999999999999999999999999999999999999987664
Q ss_pred -HHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHH
Q 009663 301 -LKEARRAFDRNS----KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 301 -~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
+++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA---FGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 788999999885 46889999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 009663 376 YFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM---KIEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 435 (529)
+|++|.+. |+.||..+|+.||.+|++.|++++|.++|++| +..|+..||+.++..+...
T Consensus 162 l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999877 99999999999999999999999999999999 7899999999999988754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=215.20 Aligned_cols=427 Identities=8% Similarity=-0.040 Sum_probs=292.4
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhC
Q 009663 47 YAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSC 124 (529)
Q Consensus 47 ~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 124 (529)
.+..+-..+.+.| ++++|...|+++. .|+...|..+...+... |++++|+..|+++.+.+ +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNK-KYDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 3444555566666 7777777766664 35666666666666666 77777777777666654 44556666666666
Q ss_pred ccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----CChhhHHHH---HHHHHhcCCH
Q 009663 125 PDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD----RNVVSWTAM---ISGYTRVGDI 197 (529)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~l---l~~~~~~g~~ 197 (529)
...|++++|...++.+.+.+. ++......++..+.... ....+.+.+..+.. ++...+... ..........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 666777777777766666542 23333333444333333 33333333321111 000000000 0000011111
Q ss_pred HHHHHHHhhCC---------CC-ChhhHHHHHHHHHh---CCChhHHHHHHHHhhh-----cc-cCCC----CCCHHHHH
Q 009663 198 KNAASLFDSMP---------DR-DVPAWNSVIAGCTQ---NGLFSDAISFFRRMGM-----EV-SDNI----RPNQVTLV 254 (529)
Q Consensus 198 ~~A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~-~~~~----~p~~~~~~ 254 (529)
..+...+.... .| +...+......+.. .|++++|+..|+++.. .. .+.. +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11122222221 11 24455555555554 8999999999999874 10 0000 22345677
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC
Q 009663 255 CALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQ 331 (529)
Q Consensus 255 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 331 (529)
.+..++...|++++|...++.+.+..+. ..++..+..++...|++++|...|+++.+ .+...|..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 7888899999999999999999988765 77888899999999999999999987654 355688999999999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
+++|...++++.+ .. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|..
T Consensus 320 ~~~A~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 320 YDQAGKDFDKAKE---LD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTHHHHHHHHHHH---TC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH---hC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999975 22 2356778888899999999999999999998652 3357788999999999999999999
Q ss_pred HHHhC-C---CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 009663 412 VVKGM-K---IEPD----EVVWGSLLNGCKI---YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRK 480 (529)
Q Consensus 412 ~~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (529)
.++++ . ..++ ...+..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99887 2 2222 4488889999999 9999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 009663 481 MLKDRNA 487 (529)
Q Consensus 481 ~~~~~~~ 487 (529)
++.+...
T Consensus 474 ~a~~~~~ 480 (514)
T 2gw1_A 474 ESADLAR 480 (514)
T ss_dssp HHHHHCS
T ss_pred HHHHhcc
Confidence 9987654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=210.61 Aligned_cols=433 Identities=9% Similarity=-0.061 Sum_probs=324.1
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhc
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYAS 89 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~ 89 (529)
.......+-..++...|...++.+.+.. |++..+..+...|.+.| ++++|...|+.+. +.+..+|..+...+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3455666777899999999999999886 68999999999999999 9999999999875 4566789999999999
Q ss_pred CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCCCH
Q 009663 90 QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETAL---VNSYSRSGNDI 166 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~ 166 (529)
. |++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+......- ........ ..
T Consensus 86 ~-g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 161 (514)
T 2gw1_A 86 L-GKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP-SV 161 (514)
T ss_dssp T-TCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC-CH
T ss_pred H-hhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc-hh
Confidence 9 99999999999999987 556666666665554444344444444333333222222111111 11111111 22
Q ss_pred HHHHHHHhhCCC---------C-ChhhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHH
Q 009663 167 GIARKLFDEMSD---------R-NVVSWTAMISGYTR---VGDIKNAASLFDSMPD----------------R-DVPAWN 216 (529)
Q Consensus 167 ~~A~~~~~~~~~---------~-~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~ 216 (529)
..+...+..... | +...+......+.. .|++++|...|+++.+ | +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222223322221 1 23445555555554 8999999999987644 1 345788
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG 296 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (529)
.+...+...|++++|...|+++... .|+...+..+..++...|++++|...++.+.+..+ .+..++..+..+|.
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 8899999999999999999999854 44477888888999999999999999999988754 36678889999999
Q ss_pred hCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 297 KCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
..|++++|...|++.. ..+...+..+...+...|++++|+..++++.+ . .+.+...+..+...+...|++++|
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR---K-FPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH---H-STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---H-cccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999998764 34566899999999999999999999999975 2 223557788889999999999999
Q ss_pred HHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEPQ----IEHYGCLVDLLGR---AGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFA 444 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 444 (529)
...++++.+...-.++ ...+..+...|.. .|++++|...++++ ...| +..++..+...+...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998764222222 3489999999999 99999999999988 3344 678889999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHH
Q 009663 445 VKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 445 ~~~~~~~~p~~~~~~~~l 462 (529)
++++.+..|+++..+..+
T Consensus 472 ~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHH
Confidence 999999999888877766
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-23 Score=207.38 Aligned_cols=420 Identities=11% Similarity=0.025 Sum_probs=274.7
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHH
Q 009663 45 NFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVL 121 (529)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 121 (529)
...+..+...+.+.| ++++|...|+.+. +.+..+|..+...+... |++++|++.|+++.+.+ +.+..++..+.
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 345566667777777 8888888887764 35667777777777777 88888888888887765 55677777777
Q ss_pred HhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhcC
Q 009663 122 KSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDR------NVVSWTAMISGYTRVG 195 (529)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g 195 (529)
.++...|++++|...++ .... .|+ .....+..+...+ ....|...++++... ........+..+....
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~-~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERN-LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHH-HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHH-HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 77888888888888775 3222 222 1122233445555 566777777776541 1122234444555566
Q ss_pred CHHHHHHHHhhCCCCChh---hHHHHHHHHHhC--------CChhHHHHHHHHhhhcccCCCCCC--------HHHHHHH
Q 009663 196 DIKNAASLFDSMPDRDVP---AWNSVIAGCTQN--------GLFSDAISFFRRMGMEVSDNIRPN--------QVTLVCA 256 (529)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~p~--------~~~~~~l 256 (529)
+.+.+...+......+.. ....+...+... |++++|+.+|+++.. ..|+ ..++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-----~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-----ANTVDDPLRENAALALCYT 249 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-----HCCCcchhhHHHHHHHHHH
Confidence 666666666665544332 233333322222 467778888887763 3443 2235555
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChh
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSE 333 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 333 (529)
...+...|++++|...++.+.+..+ +..++..+...+...|++++|...|+++. ..+..+|..+...+...|+++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Confidence 5667777888888888888877654 36667777777888888888888877654 234567777788888888888
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
+|+..++++.+ .. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...|...|++++|...|
T Consensus 328 ~A~~~~~~a~~---~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 328 NAKEDFQKAQS---LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHHHHHH---HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH---hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888765 21 2234667777777788888888888888877541 224667777788888888888888888
Q ss_pred HhC-C-------CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 414 KGM-K-------IEPDEVVWGSLLNGCKIY----------GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 414 ~~~-~-------~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
+++ . .......+......+... |++++|+..++++.+..|+++.++..++.+|.+.|++++|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 776 1 111223344445566666 8888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCC
Q 009663 476 RKVRKMLKDRNA 487 (529)
Q Consensus 476 ~~~~~~~~~~~~ 487 (529)
...+++..+...
T Consensus 482 ~~~~~~al~~~~ 493 (537)
T 3fp2_A 482 IELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhCC
Confidence 888888776543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=197.44 Aligned_cols=319 Identities=15% Similarity=0.128 Sum_probs=231.9
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAG 221 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 221 (529)
+...+..+...+.+.| ++++|..+|+++.. .+..+|..+..++...|++++|...|+++.+ .+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444555555555555 55555555555442 2344555555555555555555555555432 245566777777
Q ss_pred HHhCCChhHHHHHHHHhhhcccCCCCCCH----HHHHHH------------HHHhhccCCchHHHHHHHHHHHhCCCCCc
Q 009663 222 CTQNGLFSDAISFFRRMGMEVSDNIRPNQ----VTLVCA------------LSAIGHTGMLQLGKVIHGYVYRNGLDLDS 285 (529)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (529)
|.+.|++++|.+.|+++. ...|+. ..+..+ ...+...|++++|...++.+.+..+ .+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 177 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVL-----KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDA 177 (450)
T ss_dssp HHHTTCHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHcCCHHHHHHHHHHHH-----hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence 777777777777777776 334443 333333 3347778888888888888887754 366
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-HHHHHH-
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-VTFISL- 360 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l- 360 (529)
.++..++.+|...|++++|...|+++. ..+..+|..+..+|...|++++|+..|+++.. ..|+. ..+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK-----LDQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCChHHHHHHHH
Confidence 778888888999999999998888764 34667888999999999999999999999865 33433 333333
Q ss_pred -----------HHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 009663 361 -----------LNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DE 422 (529)
Q Consensus 361 -----------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 422 (529)
...+...|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|...++++ ...| +.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 77888999999999999999864 454 457888999999999999999999987 4445 68
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANI------------YGELG-----KWDEVRKVRKM 481 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~ 481 (529)
..|..++.+|...|++++|...+++++++.|+++.++..++.+ |...| +.+++.+.+++
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988844 44444 55666777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=197.85 Aligned_cols=356 Identities=10% Similarity=0.063 Sum_probs=235.7
Q ss_pred hHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHH
Q 009663 63 TYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQ 139 (529)
Q Consensus 63 ~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (529)
..+...|..+. +.+...|..+...+.+. |++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAA-GQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444443 34456788888888888 99999999999988765 66788888888888899999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 009663 140 IVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--RN-V---VSWTAMISGYTRVGDIKNAASLFDSMPDRDVP 213 (529)
Q Consensus 140 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 213 (529)
+.+.+ +.+..++..+..+|.+.| ++++|.+.|+++.. |+ . ..+..+...+...
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------- 144 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ------------------- 144 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------
Confidence 88876 336778888888899999 89999999888866 32 2 4555554432111
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHH
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALID 293 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (529)
.+..+...+...|++++|+..|+++... .+.+...+..+..++...|++++|...++.+.+..+ .+..++..++.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 219 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 1122333455555666666666555432 122444555555555666666666666665555432 23455555666
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CChhHHHH------------HHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-----
Q 009663 294 MYGKCGSLKEARRAFDRNSK---KRLTSWNS------------MINSFALHGQSENSICVFEEMMRCQDHNIRPD----- 353 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~----- 353 (529)
+|...|++++|...|+++.. .+...+.. +...+...|++++|..+|+++.+ ..|+
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~ 294 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-----TEPSIAEYT 294 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCCSSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCcchHHH
Confidence 66666666666666655432 12223332 37788888999999999998865 2344
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLN 430 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 430 (529)
...+..+..++.+.|++++|...++++.+. .| +...|..+..+|...|++++|...++++ ...|+ ...+..+..
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 346777888889999999999999988754 44 5788889999999999999999999887 66664 555655553
Q ss_pred H------------HHHcC-----CHHHHHHHHHH-HHhcCCCC
Q 009663 431 G------------CKIYG-----RTDFAEFAVKK-LIEIDPNN 455 (529)
Q Consensus 431 ~------------~~~~g-----~~~~A~~~~~~-~~~~~p~~ 455 (529)
+ |...| +.+++.+.+++ +++..|++
T Consensus 372 ~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 2 33333 56778888886 67777764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-21 Score=192.91 Aligned_cols=429 Identities=9% Similarity=-0.017 Sum_probs=322.4
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhc
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYAS 89 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~ 89 (529)
.......+...++.+.|...++.+.+.. +.++..+..+...|.+.| ++++|.+.|+.+. +.+..+|..+...+..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3445566667789999999999998874 457888999999999999 9999999999875 4567788889999999
Q ss_pred CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCCHH
Q 009663 90 QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGF--EQYPVVETALVNSYSRSGNDIG 167 (529)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~ 167 (529)
. |++++|+..|+.+ ... |+.. ...+..+...+....|...++.+....+ .+........+..+.... +.+
T Consensus 106 ~-g~~~~A~~~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (537)
T 3fp2_A 106 L-GNFTDAMFDLSVL-SLN---GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF-DSH 177 (537)
T ss_dssp H-TCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS-CHH
T ss_pred c-CCHHHHHHHHHHH-hcC---CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc-ChH
Confidence 9 9999999999744 322 2211 1223344445556788888888865321 111111233445566777 888
Q ss_pred HHHHHHhhCCCCChh---hHHHHHHHHHh--------cCCHHHHHHHHhhCCCC--C--------hhhHHHHHHHHHhCC
Q 009663 168 IARKLFDEMSDRNVV---SWTAMISGYTR--------VGDIKNAASLFDSMPDR--D--------VPAWNSVIAGCTQNG 226 (529)
Q Consensus 168 ~A~~~~~~~~~~~~~---~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g 226 (529)
.+...+......+.. ....+...+.. .|++++|..+|+++.+. + ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 888888777764443 33333333322 25889999999987653 2 225777778899999
Q ss_pred ChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHH
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARR 306 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (529)
++++|...|++... ..|+...+..+..++...|+++.|...++.+.+..+. +..++..+..++...|++++|..
T Consensus 258 ~~~~A~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 258 NLLDAQVLLQESIN-----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp CHHHHHHHHHHHHH-----HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999984 4677788888999999999999999999999988653 67788999999999999999999
Q ss_pred HHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 307 AFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 307 ~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
.|++.. ..+...|..+...+...|++++|...++++.+ . .+.+...+..+...+...|++++|...|+++.+.
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL---K-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 998764 34566899999999999999999999999976 3 2334568888899999999999999999998754
Q ss_pred cCCCC----ChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009663 384 YRIEP----QIEHYGCLVDLLGRA----------GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKK 447 (529)
Q Consensus 384 ~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 447 (529)
..-.+ ....+..+...+.+. |++++|...|+++ ...| +...+..+...+...|++++|.+.|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 21111 223345556778888 9999999999988 3344 678899999999999999999999999
Q ss_pred HHhcCCCCchhHHH
Q 009663 448 LIEIDPNNGGYGIM 461 (529)
Q Consensus 448 ~~~~~p~~~~~~~~ 461 (529)
+.++.|+++.....
T Consensus 488 al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 488 SAILARTMDEKLQA 501 (537)
T ss_dssp HHHHC--CHHHHHH
T ss_pred HHHhCCCcHHHHHH
Confidence 99999987666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-19 Score=170.11 Aligned_cols=303 Identities=14% Similarity=0.091 Sum_probs=191.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 009663 151 VETALVNSYSRSGNDIGIARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQ 224 (529)
Q Consensus 151 ~~~~l~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 224 (529)
.+..+...+...| ++++|...|+++.. .+..++..+..++...|++++|...|+++.+ .+...|..+...+..
T Consensus 5 ~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 3444444444455 45555555544432 1233444445555555555555555544321 244566666777777
Q ss_pred CCChhHHHHHHHHhhhcccCCCCC---C-HHHHHHH------------HHHhhccCCchHHHHHHHHHHHhCCCCCccHH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRP---N-QVTLVCA------------LSAIGHTGMLQLGKVIHGYVYRNGLDLDSFIS 288 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p---~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 288 (529)
.|++++|...|+++. ...| + ...+..+ ...+...|++++|...++.+.+..+ .+..++
T Consensus 84 ~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVL-----KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HTCHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred cCChHHHHHHHHHHH-----hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 777777777777766 3344 2 2222222 3566777777777777777777654 355667
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHH------
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFI------ 358 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~------ 358 (529)
..+..++...|++++|...+++..+ .+...+..+...+...|++++|...+++..+ . .|+ ...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~--~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK---L--DQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---H--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---h--CccchHHHHHHHHHH
Confidence 7777777788888888877776543 3455777777788888888888888877764 2 232 22222
Q ss_pred ------HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 359 ------SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-I----EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 359 ------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
.+...+...|++++|...++++.+. .|+ . ..+..+..++...|++++|.+.+++. ...| +..++
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 2245567778888888888887754 333 2 23445667777888888888888776 3334 67777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+...+...|++++|...++++.+.+|+++.++..+..+...
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 7777788888888888888888888888777777777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-19 Score=167.53 Aligned_cols=296 Identities=13% Similarity=0.038 Sum_probs=246.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 009663 180 NVVSWTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCA 256 (529)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~l 256 (529)
|+..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|+..|+++... .+.+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcchHHHHH
Confidence 355678888999999999999999998753 46778999999999999999999999999853 23356788888
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCC--CCccHHHHH------------HHHHHhCCCHHHHHHHHhhcC---CCChhHH
Q 009663 257 LSAIGHTGMLQLGKVIHGYVYRNGLD--LDSFISNAL------------IDMYGKCGSLKEARRAFDRNS---KKRLTSW 319 (529)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 319 (529)
..++...|++++|...++.+.+..+. .+...+..+ ...+...|++++|...|+++. ..+...+
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 99999999999999999999877541 133444444 578899999999999998764 3466789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHH----
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYG---- 394 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~---- 394 (529)
..+...+...|++++|+..++++.+ ..+.+...+..+...+...|++++|...++.+.+. .|+ ...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 230 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASK----LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQ 230 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT----TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHH
Confidence 9999999999999999999999974 23446778889999999999999999999999865 443 33333
Q ss_pred --------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 395 --------CLVDLLGRAGRFEEALEVVKGM-KIEPD-E----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 395 --------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|+..++++.+..|+++.++.
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 2366789999999999999988 33444 3 23556778899999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 461 MLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++.++...|++++|...++++.+..
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-18 Score=159.12 Aligned_cols=281 Identities=9% Similarity=-0.008 Sum_probs=162.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHh
Q 009663 184 WTAMISGYTRVGDIKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAI 260 (529)
Q Consensus 184 ~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~ 260 (529)
+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++... .+.+...+..+...+
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFAVGCYY 100 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHH
Confidence 33333333344444444444443321 12233334444444455555555555544422 112233444444444
Q ss_pred hccC-CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHH
Q 009663 261 GHTG-MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSI 336 (529)
Q Consensus 261 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 336 (529)
...| ++++|...++.+.+..+ .+..++..+..++...|++++|...|++..+ .+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 4455 45555555555544432 1344455555555666666666665554332 23345555666667777777777
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCChHHH
Q 009663 337 CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR-------IEPQIEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 337 ~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 409 (529)
..++++.+ ..+.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|
T Consensus 180 ~~~~~al~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 180 RFFSQALS----IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH----hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777653 2223456666677777777777777777777664311 122356777788888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCHH
Q 009663 410 LEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY-GELGKWD 473 (529)
Q Consensus 410 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 473 (529)
...+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888776 3233 5677778888888888888888888888888888888888888877 4555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-18 Score=159.61 Aligned_cols=265 Identities=10% Similarity=0.013 Sum_probs=226.9
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHH
Q 009663 210 RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
.++..+..+...+...|++++|+++|+++... .+.+...+..++.++...|++++|..+++.+.+..+ .+..++.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 46667888889999999999999999999854 233444566677888999999999999999998765 3677888
Q ss_pred HHHHHHHhCC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHh
Q 009663 290 ALIDMYGKCG-SLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACT 365 (529)
Q Consensus 290 ~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~ 365 (529)
.+...+...| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+ .. +.+...+..+...+.
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~-~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ---LM-KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hc-cccHHHHHHHHHHHH
Confidence 8999999999 99999999998654 3456899999999999999999999999976 32 224566777888999
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI----------EPDEVVWGSLLNGCK 433 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~ 433 (529)
..|++++|...++++.+ ..| +...+..+...|...|++++|...++++ .. +....++..+...+.
T Consensus 171 ~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 171 LTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 99999999999999984 345 5788999999999999999999999877 11 334678999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..|++++|+..++++.+..|+++.++..++.++.+.|++++|...++++.+..
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-16 Score=158.80 Aligned_cols=365 Identities=10% Similarity=0.010 Sum_probs=256.7
Q ss_pred ChhHHHHHHHHHhc----CCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc----CCCchHHHHHHHHHHHhCCCC
Q 009663 76 NTYLYTAMITAYAS----QPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD----VLESRGTKMVHTQIVKSGFEQ 147 (529)
Q Consensus 76 ~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~ 147 (529)
+..++..+-..+.. . +++++|+..|++..+.| +...+..+...+.. .+++++|.+.++...+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETT-KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 44444444444444 4 66666666666666543 33455555555554 566666666666666554
Q ss_pred chhHHHHHHHHHHh----cCCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHH
Q 009663 148 YPVVETALVNSYSR----SGNDIGIARKLFDEMSD-RNVVSWTAMISGYTR----VGDIKNAASLFDSMPD-RDVPAWNS 217 (529)
Q Consensus 148 ~~~~~~~l~~~~~~----~g~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 217 (529)
+...+..|...|.. .+ ++++|.+.|++..+ .+...+..+...|.. .++.++|.+.|++..+ .++..+..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555556666665 56 66777776666554 344556666666665 6677777777766433 45667777
Q ss_pred HHHHHHh----CCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc----cCCchHHHHHHHHHHHhCCCCCccHHH
Q 009663 218 VIAGCTQ----NGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH----TGMLQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 218 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
+...|.. .+++++|+++|++.... + +...+..+...+.. .+++++|..++++..+.| +...+.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS---G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777 78888888888887643 2 44556666666654 678888888888887765 345666
Q ss_pred HHHHHHHh----CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHHc-----CChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 290 ALIDMYGK----CGSLKEARRAFDRNSKK-RLTSWNSMINSFALH-----GQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 290 ~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
.+...|.. .+++++|...|++..+. +...+..+...|... +++++|+..|++..+ .+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~---~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE---QG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH---TT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh---cC---CHHHHHH
Confidence 67777777 78999999999886554 455777888888887 899999999999876 43 3456666
Q ss_pred HHHHHhCCC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009663 360 LLNACTHGG---LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGMKIEPDEVVWGSLLNGC 432 (529)
Q Consensus 360 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 432 (529)
+...+...| ++++|..+|++..+. .++..+..|...|.. .+++++|.++|++.--..+...+..+...|
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 666676656 889999999998854 467788888888988 899999999999882234678888888888
Q ss_pred HH----cCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 009663 433 KI----YGRTDFAEFAVKKLIEIDPN---NGGYGIMLANIYGE 468 (529)
Q Consensus 433 ~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 468 (529)
.. .+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88 89999999999999998854 66666666665443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=164.94 Aligned_cols=259 Identities=12% Similarity=-0.016 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHH
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALI 292 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 292 (529)
..+..+...+.+.|++++|+..|+++... .+.+...+..+..++...|++++|...++.+.+..+ .+..++..+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~ 139 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALA 139 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34555555556666666666666655532 122344555555555566666666666666555543 2444555556
Q ss_pred HHHHhCCCHHHHHHHHhhcCCC---ChhHHHH---------------HHHHHHHcCChhHHHHHHHHHhhcccCCCC-CC
Q 009663 293 DMYGKCGSLKEARRAFDRNSKK---RLTSWNS---------------MINSFALHGQSENSICVFEEMMRCQDHNIR-PD 353 (529)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~ 353 (529)
.+|...|++++|...|+++... +...+.. .+..+...|++++|+..++++.+ .... ++
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~ 216 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR---LDPTSID 216 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH---HSTTSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH---hCcCccc
Confidence 6666666666666666543321 1111110 23333488999999999999976 2211 25
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLN 430 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 430 (529)
..++..+...+...|++++|...++++.+. .| +...+..+...|...|++++|...|+++ ...| +...+..+..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 293 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 788899999999999999999999999864 44 5789999999999999999999999988 4444 6888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNN-----------GGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
.+...|++++|...++++.+..|++ ..++..++.+|...|++++|..++++.
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999999988877 789999999999999999999987643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-16 Score=159.50 Aligned_cols=412 Identities=10% Similarity=0.018 Sum_probs=286.6
Q ss_pred CCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHH
Q 009663 42 SQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYP 118 (529)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 118 (529)
|-+...+..++. +.+.| +++.|..+|+++. +.+...|..++..+.+. |++++|..+|++++.. .|+...|.
T Consensus 10 P~~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~a~~~~~ral~~---~p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMK---VLHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTT---CCCHHHHH
T ss_pred CCCHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc---CCChHHHH
Confidence 446778888888 46677 9999999999885 34566888999999888 9999999999999886 45777776
Q ss_pred HHHHhC-ccCCCchHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCCHHHHHHHHhhCCC-CCh
Q 009663 119 HVLKSC-PDVLESRGTKM----VHTQIVKS-GFEQ-YPVVETALVNSYSR---------SGNDIGIARKLFDEMSD-RNV 181 (529)
Q Consensus 119 ~l~~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~~A~~~~~~~~~-~~~ 181 (529)
..+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .| +++.|..+|++... |..
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchhh
Confidence 666532 34577777765 67666654 4433 45677777776654 67 78889999988775 322
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHh------hhcccCCCCCCH--
Q 009663 182 ---VSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRM------GMEVSDNIRPNQ-- 250 (529)
Q Consensus 182 ---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~~~~~~p~~-- 250 (529)
..|..........|. ..+..++. .+.++++.|..++... .......++|+.
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred hHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 222222211101110 11111111 1234566666665542 111000134431
Q ss_pred ------HHHHHHHHHhhc----cCCc----hHHHHHHHHHHHhCCCCCccHHHHHHHHHHh-------CCCHH-------
Q 009663 251 ------VTLVCALSAIGH----TGML----QLGKVIHGYVYRNGLDLDSFISNALIDMYGK-------CGSLK------- 302 (529)
Q Consensus 251 ------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~------- 302 (529)
..|...+..... .++. ..+..+|++++...+ .+..+|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 344444432221 1233 367788998888743 367788888887775 78887
Q ss_pred HHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH--HHHHHHHHHHhCCCcHHHHHHH
Q 009663 303 EARRAFDRNSK---K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG--VTFISLLNACTHGGLVEQGRAY 376 (529)
Q Consensus 303 ~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 376 (529)
+|+.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|++++|..+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----SSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-----ccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 89999998764 3 466899999999999999999999999975 34542 4788888888889999999999
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 377 FKLMTKTYRIEP-QIEHYGCLVDL-LGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 377 ~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
|++..+. .| +...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...
T Consensus 379 ~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 379 FKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999843 44 33444333322 34689999999999987 4345 68899999999999999999999999999987
Q ss_pred CCCch----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 453 PNNGG----YGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 453 p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|.++. +|...+......|+.+.+..+.+++.+.-.
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 76655 777778888889999999999998876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-16 Score=155.46 Aligned_cols=364 Identities=11% Similarity=0.023 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHCCCCCCCcchHHHHHHhCcc----CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCCH
Q 009663 95 SSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPD----VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSR----SGNDI 166 (529)
Q Consensus 95 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~ 166 (529)
..++..++...+.| +...+..+...+.. .+++++|...++...+.| +...+..|...|.. .+ +.
T Consensus 24 ~~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~ 95 (490)
T 2xm6_A 24 NVNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ-DY 95 (490)
T ss_dssp -CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CH
T ss_pred hHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CH
Confidence 33456666665543 56666667666665 899999999999998875 56788888999998 88 99
Q ss_pred HHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhHHHHHHH
Q 009663 167 GIARKLFDEMSD-RNVVSWTAMISGYTR----VGDIKNAASLFDSMPD-RDVPAWNSVIAGCTQ----NGLFSDAISFFR 236 (529)
Q Consensus 167 ~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 236 (529)
++|.+.|++..+ .+...+..+...|.. .+++++|...|++..+ .++..+..+...|.. .+++++|++.|+
T Consensus 96 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 96 AQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999876 467788888888888 8899999999998654 367788888888887 789999999999
Q ss_pred HhhhcccCCCCCCHHHHHHHHHHhhc----cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----CCCHHHHHHHH
Q 009663 237 RMGMEVSDNIRPNQVTLVCALSAIGH----TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK----CGSLKEARRAF 308 (529)
Q Consensus 237 ~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 308 (529)
+.... + +...+..+...+.. .++.++|...|++..+.| +...+..+...|.. .+++++|...|
T Consensus 176 ~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 176 KAAEQ---G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHC---C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98753 3 56677777777776 899999999999999876 45677778888886 88999999999
Q ss_pred hhcCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC-----CcHHHHHHHHH
Q 009663 309 DRNSKK-RLTSWNSMINSFAL----HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG-----GLVEQGRAYFK 378 (529)
Q Consensus 309 ~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 378 (529)
++..+. +...+..+...|.. .++.++|+.+|++..+ .+ +...+..+...+... +++++|..+|+
T Consensus 247 ~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE---QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT---TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH---cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 986654 55677888888888 8999999999999976 43 445666677777766 89999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 009663 379 LMTKTYRIEPQIEHYGCLVDLLGRAG---RFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 379 ~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 451 (529)
+..+. .+...+..+...|...| ++++|.++|++.-...++..+..+...|.. .+++++|...|+++.+.
T Consensus 321 ~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 321 KSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99864 24567788888888767 789999999988223578889999999988 89999999999999886
Q ss_pred CCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 009663 452 DPNNGGYGIMLANIYGE----LGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 452 ~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 487 (529)
+ ++..+..++.+|.+ .+++++|...+++..+.+.
T Consensus 397 ~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 397 G--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4 68899999999998 8999999999999998874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-16 Score=159.91 Aligned_cols=381 Identities=9% Similarity=0.068 Sum_probs=293.2
Q ss_pred CchhHHHHHHHHHhhcCCChhHHHHHhhcCC-CC-----ChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcch
Q 009663 43 QTNFYAFKLVRFCTLKLSNLTYARFIFDHLT-TP-----NTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFI 116 (529)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 116 (529)
.+|.--...++.|...| .+.+|.++++.+. .+ +....|.++....+. +..+..+..++.... .
T Consensus 983 ~~PeeVs~~vKaf~~ag-lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~--------d 1051 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTAD-LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNY--------D 1051 (1630)
T ss_pred cCHHHhHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhc--------c
Confidence 45566678889999888 9999999999886 22 234566666666554 556666666655321 1
Q ss_pred HHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 009663 117 YPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGD 196 (529)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 196 (529)
...+...+...|.+++|..+|++.. ......+.++ -..+ ++++|.++.++. .+..+|..+..++.+.|+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~-nldrAiE~Aerv--n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIG-NLDRAYEFAERC--NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHh-hHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC
Confidence 3447777888999999999998752 1222223332 2677 899999999977 447789999999999999
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHH
Q 009663 197 IKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYV 276 (529)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (529)
+++|++.|.+. .|...|..++.++.+.|++++|+++|...++. .+++...+.++.+|++.++++....+.
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-----~~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-----ARESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 99999999775 67888899999999999999999999987743 344444445888999999888644443
Q ss_pred HHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHH
Q 009663 277 YRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT 356 (529)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~ 356 (529)
+ .++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.. +..+
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~---------n~~a 1252 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN---------STRT 1252 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC---------CHHH
Confidence 2 245566777999999999999999999985 489999999999999999999999873 4588
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKI 434 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 434 (529)
|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-+...+.+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 998899999999999988766542 346778889999999999999999999776 66653 4456556555554
Q ss_pred --cCCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhcCCHHHHHHHH
Q 009663 435 --YGRTDFAEFAVKKLIEIDP-----NNGGYGIMLANIYGELGKWDEVRKVR 479 (529)
Q Consensus 435 --~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (529)
-++..++.+.|..-..+.| .+...|..+...|.+.|+++.|....
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4566777777776666555 57788999999999999999999543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-17 Score=147.88 Aligned_cols=271 Identities=8% Similarity=0.016 Sum_probs=212.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 189 SGYTRVGDIKNAASLFDSMPDRDV----PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
+-....|++..|+..+++....++ .....+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCC
Confidence 344567888888888877665433 2445567888889998888875543 23566777888888888888
Q ss_pred CchHHHHHHHHHHHhCCCC-CccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHh
Q 009663 265 MLQLGKVIHGYVYRNGLDL-DSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMM 343 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 343 (529)
+.++|.+.++.+...+..| +...+..+..++...|++++|++.|++ ..+...+..++..+.+.|++++|...|+++.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999888876544 445667777899999999999999998 5677789999999999999999999999997
Q ss_pred hcccCCCCCCHHHH---HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 009663 344 RCQDHNIRPDGVTF---ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE 419 (529)
Q Consensus 344 ~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 419 (529)
+ . .|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.|++. ...
T Consensus 158 ~---~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 158 D---Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp H---H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred h---h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6 3 3554321 22334455679999999999999975 2457889999999999999999999999997 445
Q ss_pred C-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 009663 420 P-DEVVWGSLLNGCKIYGRTDF-AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVR 479 (529)
Q Consensus 420 p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (529)
| +..++..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-|
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 5 68889999999999999876 67899999999998876654 355666666666544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-18 Score=157.40 Aligned_cols=287 Identities=14% Similarity=0.098 Sum_probs=96.9
Q ss_pred hcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHH
Q 009663 57 LKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMV 136 (529)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (529)
+.| ++++|.+.++++.+|+ .|..+..++... |++++|++.|.+ .+|..+|..++.++...|++++|..+
T Consensus 15 ~~~-~ld~A~~fae~~~~~~--vWs~La~A~l~~-g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEPA--VWSQLAKAQLQK-GMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCChH--HHHHHHHHHHHc-CCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444 7788888888875553 777888888877 888888888853 34566777888888888888888887
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH
Q 009663 137 HTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWN 216 (529)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (529)
++...+. .+++.+.+.++.+|.+.| +++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTN-RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhC-CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 7666553 344666777777787777 77777666642 55566777777777777777777777666 3566
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG 296 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (529)
.++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~---------~~~~Wk~v~~aCv~~~ef~lA--------------------------- 196 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKAN---------STRTWKEVCFACVDGKEFRLA--------------------------- 196 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHT---------CHHHHHHHHHHHHHTTCHHHH---------------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHcC---------CchhHHHHHHHHHHcCcHHHH---------------------------
Confidence 66666666666666666666551 344555555555555555554
Q ss_pred hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHH
Q 009663 297 KCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
......+. ..+.-...++..|.+.|++++|..+++.... ..+ ....|+-+..++++- ++++..+
T Consensus 197 --------~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~-----le~ah~~~ftel~il~~ky-~p~k~~e 261 (449)
T 1b89_A 197 --------QMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG-----LERAHMGMFTELAILYSKF-KPQKMRE 261 (449)
T ss_dssp --------HHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----STTCCHHHHHHHHHHHHTT-CHHHHHH
T ss_pred --------HHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 33333322 2222233455666666667777666666632 222 234444444444432 2333333
Q ss_pred HHHHhHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 376 YFKLMTKTYRIEP------QIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 376 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
.++...++.+++| +...|..++..|...++++.|....-+-
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 3333323224443 3556777778888888888777655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-15 Score=154.72 Aligned_cols=421 Identities=12% Similarity=0.085 Sum_probs=303.9
Q ss_pred cccccccccHHHHHHHHHHccCcchHHHHHHHHHHhC--CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHH
Q 009663 4 VTNQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLG--QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYT 81 (529)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 81 (529)
++...+|-........+...+.+.++..+++...-.+ ++-+....+.|+....+. +........+.....+ ..
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~d---~~ 1053 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNYD---AP 1053 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhcc---HH
Confidence 4455555555566666667788888888888887332 123445666666666555 4555555555554333 33
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 009663 82 AMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSR 161 (529)
Q Consensus 82 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (529)
.+...+... |.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++..
T Consensus 1054 eIA~Iai~l-glyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1054 DIANIAISN-ELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 355566666 99999999999862 12222233333 677899999888755 257788899999999
Q ss_pred cCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 162 SGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPD--RDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 162 ~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
.| ++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+..
T Consensus 1118 ~G-~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~--- 1191 (1630)
T 1xi4_A 1118 KG-MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--- 1191 (1630)
T ss_pred CC-CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHh---
Confidence 99 999999999775 6777888899999999999999999977543 333344468999999999885443321
Q ss_pred hcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHH
Q 009663 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSW 319 (529)
Q Consensus 240 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 319 (529)
.|+...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aW 1253 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTW 1253 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHH
Confidence 345566777888999999999999999875 47889999999999999999999877 456789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVD 398 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 398 (529)
..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++... ++.+ +...|+-|..
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii--------v~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV--------VHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh--------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHH
Confidence 988899999999888887665432 355667788888999999999999998776 5555 4566766766
Q ss_pred HHHhc--CChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------cCCCCch
Q 009663 399 LLGRA--GRFEEALEVVKGM-KIEP------DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE------------IDPNNGG 457 (529)
Q Consensus 399 ~~~~~--g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~p~~~~ 457 (529)
+|++- ++..++.++|..- .++| +...|..+...|.+.|+++.|....-+-.. ..+.++.
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~e 1402 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE 1402 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHH
Confidence 66653 4566666666543 4333 467788888889999999988843322211 1355778
Q ss_pred hHHHHHHHHHhcC---------------CHHHHHHHHH
Q 009663 458 YGIMLANIYGELG---------------KWDEVRKVRK 480 (529)
Q Consensus 458 ~~~~l~~~~~~~g---------------~~~~a~~~~~ 480 (529)
.+...+..|...+ +.+.+.+++.
T Consensus 1403 lyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1403 LYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 8887777777666 6666666665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-15 Score=152.38 Aligned_cols=400 Identities=10% Similarity=0.043 Sum_probs=274.7
Q ss_pred HccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHh-cCCCChHHHH
Q 009663 22 RCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYA-SQPAHASSAF 98 (529)
Q Consensus 22 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~-~~~~~~~~a~ 98 (529)
..++.+.+..+++.+.+. .|.+...+..++..+.+.| +++.|..+|++.. .|+...|...+.... .. |+.+.|.
T Consensus 24 ~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~-~~~~~a~ 100 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETK-GKLPSYK 100 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT-TTSTTHH
T ss_pred HhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-cchhhHH
Confidence 457888999999999876 4667788999999999999 9999999999986 477777877775443 34 7777766
Q ss_pred H----HHHHHHHC-CCCCCCcchHHHHHHhCcc---------CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009663 99 S----LYRDMVRR-GQPQPNQFIYPHVLKSCPD---------VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGN 164 (529)
Q Consensus 99 ~----~~~~m~~~-~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 164 (529)
+ +|+..... |.-+++...|...+....+ .|+++.|..+|+..++....+....|..........|
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~- 179 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN- 179 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc-
Confidence 5 77777653 4312345667666665433 6889999999999987311111234444333222222
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhh-------CC------CCC--------hhhHHHHHHHHH
Q 009663 165 DIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDS-------MP------DRD--------VPAWNSVIAGCT 223 (529)
Q Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~ 223 (529)
...+..++.. +.++++.|..++.. +. .|+ ...|...+....
T Consensus 180 -~~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 180 -IHLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp -HHHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 1122222211 12233334333322 11 111 234554443332
Q ss_pred hC----CCh----hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc-------cCCch-------HHHHHHHHHHHhCC
Q 009663 224 QN----GLF----SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH-------TGMLQ-------LGKVIHGYVYRNGL 281 (529)
Q Consensus 224 ~~----g~~----~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~ 281 (529)
.. ++. +++..+|++.... .+.+...|......+.+ .|+++ +|..++++.++.-.
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 22 232 3777888888743 23356667777666654 68887 89999999886323
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSK--K-RL-TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVT 356 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~ 356 (529)
+.+...+..++..+.+.|++++|..+|+++.+ + +. ..|...+..+.+.|+.++|..+|++..+ . .| +...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~--~~~~~~~ 392 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---D--ARTRHHV 392 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C--TTCCTHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---c--cCCchHH
Confidence 34577888899999999999999999987643 2 33 4788899999999999999999999975 2 23 2333
Q ss_pred HHHHHHH-HhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC--HHHHHHHH
Q 009663 357 FISLLNA-CTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEPD--EVVWGSLL 429 (529)
Q Consensus 357 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~ 429 (529)
|...... +...|++++|..+|+...+.. +.++..|..++..+.+.|+.++|..+|++. . ..|+ ...|...+
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3332222 335899999999999998652 235889999999999999999999999987 2 2332 45888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
......|+.+.+..++.++.+..|+
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCch
Confidence 8888999999999999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=159.12 Aligned_cols=260 Identities=14% Similarity=-0.029 Sum_probs=194.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHH
Q 009663 212 VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNAL 291 (529)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 291 (529)
...+..+...+.+.|++++|+..|+++... .+.+...+..+..++...|++++|...|+++.+..+ .+..++..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 139 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMAL 139 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 345666677777777777777777777643 233456666777777777777777777777776653 245667777
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCh-------------hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCCHHHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRL-------------TSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPDGVTF 357 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~~~~~ 357 (529)
..+|...|++++|...|+++.+.+. ..+..+...+...|++++|+.+++++.+ ... .++..++
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 216 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH---QNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH---HSCSSCCHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH---hCcCccCHHHH
Confidence 7777777777777777776543211 1334457888899999999999999976 321 1257888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY 435 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 435 (529)
..+...+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++ ...| +..++..+..++...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 899999999999999999999998651 336889999999999999999999999988 4455 588899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 436 GRTDFAEFAVKKLIEIDPN------------NGGYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
|++++|...+++++++.|+ +..++..++.++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999998876 367899999999999999998887754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=154.25 Aligned_cols=381 Identities=10% Similarity=0.061 Sum_probs=177.6
Q ss_pred HHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCC
Q 009663 13 NQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPA 92 (529)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 92 (529)
...+-.++..+++.+++.+..+.+ +++.+++.|..++.+.| ++++|.+.|.+. +|...|..++..+... |
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g-~~~eAIdsfika--~D~~~y~~V~~~ae~~-g 75 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA--DDPSSYMEVVQAANTS-G 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcC-CHHHHHHHHHcC--CCHHHHHHHHHHHHhC-C
Confidence 344567788899999999988887 34469999999999999 999999999765 5677899999999988 9
Q ss_pred ChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 009663 93 HASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKL 172 (529)
Q Consensus 93 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~ 172 (529)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...| .+++|..+
T Consensus 76 ~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g-~yeeA~~~ 144 (449)
T 1b89_A 76 NWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEK-MYDAAKLL 144 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-------CC-----------------CTTTHHHH
T ss_pred CHHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 999999988777664 4568889999999999999999988884 367789999999999999 99999999
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHH
Q 009663 173 FDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT 252 (529)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~ 252 (529)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...|+.
T Consensus 145 Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~-- 209 (449)
T 1b89_A 145 YNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADE-- 209 (449)
T ss_dssp HHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHH--
T ss_pred HHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhh--
Confidence 9988 58999999999999999999999999 48999999999999999999996655543 234443
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC--CCHHHHHHHHhhcCC--------CChhHHHHH
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC--GSLKEARRAFDRNSK--------KRLTSWNSM 322 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l 322 (529)
...++..|.+.|+++++..+++...... +-....|+-|.-+|++- ++..+.++.|..-.. .+...|.-+
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4568889999999999999999988665 44566788887777764 456666666654322 234579999
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
...|...++++.|..+.-+- ....-+...|--++. +..+.+--.+...-.... .| ..++.|+.++..
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h-----~~~a~~~~~f~~~~~---kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l~~ 355 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNH-----PTDAWKEGQFKDIIT---KVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHS-----TTTTCCHHHHHHHHH---HCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGG
T ss_pred HHHHHhhchHHHHHHHHHhC-----ChhhhhhHHHHHHHh---chhHHHHHHHHHHHHHhc---CH--HHHHHHHHHHHh
Confidence 99999999999988744322 122223444443332 333333222222222222 23 235556666666
Q ss_pred cCChHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 403 AGRFEEALEVVKGMKIEP-------------DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 403 ~g~~~~A~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
.=+...+.++|+..+.-| +..+=.++-..|....+++.-..
T Consensus 356 ~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~ 409 (449)
T 1b89_A 356 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRT 409 (449)
T ss_dssp GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 666666666666653222 23333344455566666554433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-16 Score=155.28 Aligned_cols=279 Identities=10% Similarity=-0.029 Sum_probs=148.5
Q ss_pred CHHHHHHHHhhCCC--C-ChhhHHHHHHH---HHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHh----hccC
Q 009663 196 DIKNAASLFDSMPD--R-DVPAWNSVIAG---CTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAI----GHTG 264 (529)
Q Consensus 196 ~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~----~~~~ 264 (529)
++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++.... .| +...+..+...+ ...+
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCHHHHHHHHHHHHHCC----
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhh
Confidence 45555555555331 2 33333333332 33445566666666655432 23 233333333222 2334
Q ss_pred CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH-------------
Q 009663 265 MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFAL------------- 328 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~------------- 328 (529)
+.++|..++++.....+. +..++..+...|...|++++|...|++..+ .+..++..+..+|..
T Consensus 228 ~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 556666666666655432 444555666666666666666666665432 233344444443322
Q ss_pred ------cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHH
Q 009663 329 ------HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIE----HYGCLVD 398 (529)
Q Consensus 329 ------~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~ 398 (529)
.+..+.|...+++..+ .. +.+...+..+...+...|++++|...|+++.+. .|+.. .+..+..
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~---~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADE---AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGN 379 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH---HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhh---cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Confidence 2335677788877764 21 223345677888888999999999999988743 34322 2223322
Q ss_pred -HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 399 -LLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 399 -~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
.+...|+.++|+..|++. .+.|+...... ....+..++++.++.+|+++.++..++.+|...|++++|+
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 234678899999999887 66666433322 2345567788888899999999999999999999999999
Q ss_pred HHHHHHhhCCCccCCcccEE
Q 009663 477 KVRKMLKDRNAYKTPGCSWI 496 (529)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ 496 (529)
+.+++..+.+...+...+|+
T Consensus 451 ~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --------------------
T ss_pred HHHHHHHhcCCCCCcHhhcC
Confidence 99999999887666666664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-17 Score=156.25 Aligned_cols=279 Identities=13% Similarity=0.054 Sum_probs=201.7
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH-HHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHH
Q 009663 195 GDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAIS-FFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273 (529)
Q Consensus 195 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (529)
+.++.+...|+.+...+.. ++...|++++|++ .|++...........+...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445555555555443332 3445688999998 8887653211011113455778888899999999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 274 GYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
+.+.+..+ .+..++..+..++...|++++|...|+++. ..+..++..+...+...|++++|...++++.. ..
T Consensus 88 ~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~- 162 (368)
T 1fch_A 88 EAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR---YT- 162 (368)
T ss_dssp HHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TS-
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC-
Confidence 99998864 367788899999999999999999998754 34667999999999999999999999999976 22
Q ss_pred CCCH-HHHHH---------------HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 351 RPDG-VTFIS---------------LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 351 ~p~~-~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
|+. ..+.. .+..+...|++++|...++++.+...-.++..++..+...|.+.|++++|...++
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 163 -PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp -TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 322 11110 1333347899999999999998652222247889999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 415 GM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 415 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++ ...| +..++..++..+...|++++|+..++++.+..|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 242 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 242 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88 4344 688999999999999999999999999999999999999999999999999999999999997654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=153.03 Aligned_cols=258 Identities=11% Similarity=-0.033 Sum_probs=181.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHH
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALID 293 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 293 (529)
.+..+...+...|++++|..+|+++... .+.+...+..+..++...|++++|...++.+.+..+ .+..++..+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 3444455555555555555555555432 122344444555555555555555555555555432 23445555555
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHHcCChhHHHHHHHHHhhcccCCCCCCHH
Q 009663 294 MYGKCGSLKEARRAFDRNSKK---RLTSWNSM--------------IN-SFALHGQSENSICVFEEMMRCQDHNIRPDGV 355 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~ 355 (529)
.|...|++++|...|+++.+. +...+..+ .. .+...|++++|...++++.+ . .+.+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~ 173 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE---M-NPNDAQ 173 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH---H-STTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh---h-CCCCHH
Confidence 556666666666555543321 11122221 22 36677889999999999875 2 233677
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC 432 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 432 (529)
.+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|...++++ ...| +...+..+...+
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8888999999999999999999999864 34 5788999999999999999999999987 3344 688899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPN------------NGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
...|++++|.+.++++.+..|+ ++.++..++.++.+.|++++|..++++..
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999998 68899999999999999999999987554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=144.87 Aligned_cols=248 Identities=13% Similarity=0.072 Sum_probs=203.6
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCCH--HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ--VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYG 296 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (529)
++-....|+++.|+..++... ...|+. .....+..++...|+++.|...++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 455667899999999998875 446654 3556678899999999999986654 23456778888999999
Q ss_pred hCCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 297 KCGSLKEARRAFDRNS----KK-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
..|+.++|++.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|+++
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999863 23 455778888999999999999999875 356778889999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 372 QGRAYFKLMTKTYRIEPQIEH---YGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+|...++++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++
T Consensus 148 ~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999865 465321 122334455569999999999998 334578899999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCCHHH-HHHHHHHHhhCCC
Q 009663 447 KLIEIDPNNGGYGIMLANIYGELGKWDE-VRKVRKMLKDRNA 487 (529)
Q Consensus 447 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 487 (529)
++++.+|+++.++..++.++...|+.++ +.++++++.+...
T Consensus 225 ~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 225 EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999976 5789988876654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=150.81 Aligned_cols=232 Identities=13% Similarity=0.038 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 009663 249 NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINS 325 (529)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 325 (529)
+...+..+...+.+.|++++|..+|+.+.+..+ .+..++..+..+|...|++++|+..|++.. ..+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344577888899999999999999999999865 367789999999999999999999999765 3456799999999
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCC-----------HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPD-----------GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG 394 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 394 (529)
|...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|...++++.+...-.++...+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK-----QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH-----HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHccccHHHHHHHHHHHHH-----hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 9999999999999999976 2232 22334457788999999999999999987632222588999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+...|...|++++|.+.|+++ ...| +..+|..+..++...|++++|+..++++++..|+++.++..++.+|.+.|++
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999998 3344 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 009663 473 DEVRKVRKMLKDRN 486 (529)
Q Consensus 473 ~~a~~~~~~~~~~~ 486 (529)
++|...++++.+..
T Consensus 298 ~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 298 REAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999997654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=148.53 Aligned_cols=380 Identities=9% Similarity=-0.050 Sum_probs=187.7
Q ss_pred chhHHHHHHHHHhhcCCChhHHHHHhhcCC------------CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHC----
Q 009663 44 TNFYAFKLVRFCTLKLSNLTYARFIFDHLT------------TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRR---- 107 (529)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~---- 107 (529)
....|+.|-..+...| +.++|.+.|++.. .....+|+.+...+... |++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhc
Confidence 3455666666666666 7777776665431 12344666666666666 7777777776665432
Q ss_pred -CCCC-CCcchHHHHHHhCc--cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH---HhcCCCHHHHHHHHhhCCC--
Q 009663 108 -GQPQ-PNQFIYPHVLKSCP--DVLESRGTKMVHTQIVKSGFEQYPVVETALVNSY---SRSGNDIGIARKLFDEMSD-- 178 (529)
Q Consensus 108 -~~~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~g~~~~~A~~~~~~~~~-- 178 (529)
+... ....++.....++. ..+++++|.+.|++.++..+ .++..+..+..++ ...+ +.++|.+.+++..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~-~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWP-PSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSC-CCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhcC
Confidence 1001 11233443333332 23456667777776666542 2334444333332 2334 45555555555432
Q ss_pred C-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-
Q 009663 179 R-NVVSWTAMISGYTR----VGDIKNAASLFDSMP---DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN- 249 (529)
Q Consensus 179 ~-~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~- 249 (529)
| +..++..+...+.. .|+.++|.+.+++.. ..+..++..+...|...|++++|+..+++.... .|+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~ 280 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNN 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCh
Confidence 2 33344433333332 344555655555432 234445555666666666666666666665532 332
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSF 326 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 326 (529)
..++..+..++...+.. ..... ...........+.++.|...|++.. ..+..++..+...|
T Consensus 281 ~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 23333333322111000 00000 0000000111223566777776543 33456888899999
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHH--HHHHHHH-HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGV--TFISLLN-ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRA 403 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 403 (529)
...|++++|+..|++..+ ....|... .+..+.. .....|++++|+..|++..+ +.|+.......
T Consensus 345 ~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~------- 411 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM------- 411 (472)
T ss_dssp HHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH-------
T ss_pred HHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH-------
Confidence 999999999999999876 44333221 1222222 24578999999999999883 46654332222
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 404 GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
...+.++++.. ...| +..+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 412 --~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 --KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 23334444443 2234 6788999999999999999999999999999998887776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-15 Score=135.11 Aligned_cols=218 Identities=12% Similarity=0.010 Sum_probs=160.3
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC------C----hhHHHH
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK------R----LTSWNS 321 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~ 321 (529)
.+..+...+...|++++|..+++.+.+.. .+..++..+..++...|++++|...|++..+. + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555554 44555555666666666666666666554321 1 356777
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 009663 322 MINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLL 400 (529)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 400 (529)
+...+...|++++|...|+++.+ ..|+. ..+...|++++|...++.+... .| +...+..+...+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT-----EHRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-----HCCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh-----cCchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHH
Confidence 88888888888888888888865 33443 2345567888999999888743 45 467788888899
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 009663 401 GRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 401 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
...|++++|...++++ ...| +..++..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|...
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999887 3333 6788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCC
Q 009663 479 RKMLKDRN 486 (529)
Q Consensus 479 ~~~~~~~~ 486 (529)
+++..+..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=141.35 Aligned_cols=148 Identities=9% Similarity=0.088 Sum_probs=75.1
Q ss_pred hCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 297 KCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 297 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
..|++++|...++++. ..+...+..+...+...|++++|...++++.+ . .+.+...+..+...+...|++++|
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE---L-RPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH---h-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444322 11233444455555555555555555555543 1 112344455555555555666666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCCHH
Q 009663 374 RAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-------------DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~ 439 (529)
...++++.+.. +.+...+..+...|...|++++|.+.++++ ...| +...|..+..++...|+++
T Consensus 226 ~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 226 LDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 66665555331 123455555556666666666666665554 1122 2455556666666666666
Q ss_pred HHHHHHHHHHh
Q 009663 440 FAEFAVKKLIE 450 (529)
Q Consensus 440 ~A~~~~~~~~~ 450 (529)
+|..+++++++
T Consensus 304 ~A~~~~~~~l~ 314 (327)
T 3cv0_A 304 LVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTCCSH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-15 Score=130.41 Aligned_cols=194 Identities=16% Similarity=0.056 Sum_probs=152.9
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTF 357 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~ 357 (529)
+++...+..+...+.+.|++++|...|++..+ .+...|..+..++.+.|++++|+..+++..+ ..| +...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA-----RTPRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHH
Confidence 35666777888888889999999999887643 3456888888899999999999999999875 234 45677
Q ss_pred HHHHHHHhCC-----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 009663 358 ISLLNACTHG-----------GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVV 424 (529)
Q Consensus 358 ~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 424 (529)
..+..++... |++++|...+++..+. .| +...+..+..+|...|++++|+..|++. .+..+...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 7888888888 9999999999999854 56 5788999999999999999999999987 22278899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
+..+..++...|++++|+..|+++++.+|+++.++..++.++.+.|++++|+..+++..
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-15 Score=134.02 Aligned_cols=236 Identities=12% Similarity=0.021 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC--C----cc
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL--D----SF 286 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~ 286 (529)
..|..+...+...|++++|+..|++.... . .+...+..+..++...|++++|...++.+.+..+.. + ..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL---H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh---h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 45667777788888888888888887755 3 666777777777888888888888888777654321 1 46
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHh
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACT 365 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~ 365 (529)
++..+..+|...|++++|...|++....+.. ...+...|++++|...++++.. ..| +...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY-----VNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH-----cCcchHHHHHHHHHHHH
Confidence 7777888888888888888888765432211 2456677888999999999865 233 4456778888899
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEF 443 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 443 (529)
..|++++|...++++.+.. +.+...+..+...|...|++++|...+++. ...| +...+..+...+...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999998642 335788999999999999999999999988 3344 58889999999999999999999
Q ss_pred HHHHHHhcC------CCCchhHHHHHHH
Q 009663 444 AVKKLIEID------PNNGGYGIMLANI 465 (529)
Q Consensus 444 ~~~~~~~~~------p~~~~~~~~l~~~ 465 (529)
.++++.+.. |++..++..+..+
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999988 8777777666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-16 Score=156.88 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCL 396 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 396 (529)
.+|+++|.+|++.|+.++|.++|.+|.++...|+.||..||++||.+|++.|++++|.++|++|.+. |+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 4899999999999999999999988765434688999999999999999999999999999999876 999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHhC---CCCCCHHHHHHHHHHHHH
Q 009663 397 VDLLGRAGRF-EEALEVVKGM---KIEPDEVVWGSLLNGCKI 434 (529)
Q Consensus 397 ~~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 434 (529)
|.++++.|+. ++|.++|++| |+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999874 7888999999 889999999988865443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-16 Score=159.76 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHH
Q 009663 182 VSWTAMISGYTRVGDIKNAASLFDSMP-------DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLV 254 (529)
Q Consensus 182 ~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~ 254 (529)
.+||++|++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|... |+.||..||+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCcHHHHH
Confidence 579999999999999999999997653 589999999999999999999999999999888 9999999999
Q ss_pred HHHHHhhccCCc-hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHH
Q 009663 255 CALSAIGHTGML-QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRA 307 (529)
Q Consensus 255 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (529)
++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999985 78899999999999999999999998877765444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=133.05 Aligned_cols=244 Identities=11% Similarity=-0.086 Sum_probs=182.3
Q ss_pred hCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 224 QNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
..|++++|+..|+++........+.+...+..+..++...|++++|...++++.+..+. +..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 45778888888888874300001124556777777888888888888888888887643 56778888888999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 009663 304 ARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 304 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 380 (529)
|...|++..+ .+...+..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...++..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ-----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9998887643 3566888899999999999999999999875 3455444444555556679999999999888
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 381 TKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 381 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.... +++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...++++.+.+|+
T Consensus 171 ~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 171 FEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 7642 3344444 4777788888889999999887 43342 577888999999999999999999999999997
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHH
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVR 479 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (529)
+...+ +.++...|++++|++.+
T Consensus 248 ~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHH---HHHHHHHHHHHHC----
T ss_pred hHHHH---HHHHHHHHHHHhhHHHH
Confidence 75544 56778889999998776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-14 Score=129.02 Aligned_cols=244 Identities=13% Similarity=-0.014 Sum_probs=158.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCc--cHHHH
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDS--FISNA 290 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 290 (529)
.+......+...|++++|+..|++..+. .| +...+..+..++...|++++|...++.+.+.+..++. .++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3444555666666777777766666532 22 2235555566666667777777776666663322221 23666
Q ss_pred HHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhC
Q 009663 291 LIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTH 366 (529)
Q Consensus 291 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~ 366 (529)
+..++...|++++|...|++.. ..+...|..+...|...|++++|+..|++..+ ..| +...+..+...+..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-----PTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC-----SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh-----cCCCcHHHHHHHHHHHHH
Confidence 7777777777777777776543 23445777777788888888888888887753 234 44555555523333
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGR---FEEALEVVKGM----KIEPD------EVVWGSLLNGC 432 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~ 432 (529)
.+++++|...|+++.+. .| +...+..+..++...|+ +++|...+++. ...|+ ..+|..+...+
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 45888888888888754 44 46677777777777777 66677777665 11233 25677788889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
...|++++|.+.++++.+++|+++.+...+.......+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999999888888776654443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-14 Score=136.47 Aligned_cols=376 Identities=9% Similarity=-0.024 Sum_probs=234.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc---hHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES---RGTKMVHTQIVKSGFEQYPVVETALVNSY 159 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (529)
+...+.+. |++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. ++..+..+...+
T Consensus 9 la~~~~~~-g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKR-GDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 44555667 89999999999998876 334455566666677777 8999999888754 444555566644
Q ss_pred HhcC----CCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhcCCHHHH---HHHHhhCC-CCChhhHHHHHHHHHhCCChhH
Q 009663 160 SRSG----NDIGIARKLFDEMSDR-NVVSWTAMISGYTRVGDIKNA---ASLFDSMP-DRDVPAWNSVIAGCTQNGLFSD 230 (529)
Q Consensus 160 ~~~g----~~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A---~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 230 (529)
...+ .++++|.+.|++...+ +...+..+...|...+..+.+ .+.+.... ..++..+..+...|...+.+++
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 4433 1678899888887763 455777788777776554433 33333332 2356677788888888886665
Q ss_pred HHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC---CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC----CCHHH
Q 009663 231 AISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG---MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC----GSLKE 303 (529)
Q Consensus 231 A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 303 (529)
+.+......+... ...|+ .+..+...+...| +.++|...|+...+.|.. +...+..+...|... +++++
T Consensus 160 ~~~~a~~~~~~a~-~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 160 HLDDVERICKAAL-NTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GHHHHHHHHHHHT-TTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHHHHHHHH-cCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHH
Confidence 5554333322211 22344 6677777777788 888999999999888753 444445677777654 68999
Q ss_pred HHHHHhhcCCCChhHHHHHHHH-H--HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC-----cHHHHHH
Q 009663 304 ARRAFDRNSKKRLTSWNSMINS-F--ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG-----LVEQGRA 375 (529)
Q Consensus 304 A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~ 375 (529)
|...|++....+...+..+... + ...+++++|+.+|++..+ .| +...+..+...|. .| ++++|..
T Consensus 236 A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 236 AQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999988773355577777776 4 467899999999998876 55 4556666666665 44 8899999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 009663 376 YFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKK 447 (529)
Q Consensus 376 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 447 (529)
+|++.. .-++..+..|...|.. ..++++|..+|++.--.-+......+...|.. ..+.++|..+|++
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 998775 2356677777777766 34889999999887212344455566666653 4588999999999
Q ss_pred HHhcCCCCchhHHHHHHHH--HhcCCHHHHHHHHHHHhhC
Q 009663 448 LIEIDPNNGGYGIMLANIY--GELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 448 ~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 485 (529)
+.+.++. .....+.... ...++..+|..+.++..+.
T Consensus 384 A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 384 AKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8887653 3333343333 3335677788887776554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=117.18 Aligned_cols=201 Identities=13% Similarity=0.012 Sum_probs=110.0
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 009663 253 LVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALH 329 (529)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 329 (529)
+..+...+...|++++|...++.+.+... .+..++..+..+|...|++++|.+.|+++. ..+...+..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 33344444444444445444444444332 133344445555555555555555554432 12334555555666666
Q ss_pred CChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|.++++++.. .+..| +...+..+...+...|++++|...++++.+. .| +...+..+...|...|+++
T Consensus 119 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQ---DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp TCHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHh---CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHH
Confidence 666666666666643 22333 3344555566666666666666666666543 23 3555666666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 408 EALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 408 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+|...++++ ...| +...+..+...+...|++++|.+.++++.+..|+++....
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 666666665 3233 4555566666666667777777777777666666554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-13 Score=127.48 Aligned_cols=244 Identities=9% Similarity=0.000 Sum_probs=195.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCC-chHHHHHHHHHHHhCCCCCccHHH
Q 009663 212 VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGM-LQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
...|..+...+.+.|++++|+..|+++... .| +...|..+..++...|+ +++|+..++++++..+. +..+|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-----~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 456777888888889999999999988743 45 45677778888888886 99999999998888754 667888
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHh
Q 009663 290 ALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACT 365 (529)
Q Consensus 290 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~ 365 (529)
.+..++...|++++|+..|+++. ..+...|..+..++...|++++|+..|+++.+ ..| +...|+.+..++.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~-----l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK-----EDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH-----HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHH
Confidence 88888999999999999998765 34667899999999999999999999999976 234 5677888888888
Q ss_pred C-CCcHHHH-----HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHc
Q 009663 366 H-GGLVEQG-----RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG--RFEEALEVVKGMKIEP-DEVVWGSLLNGCKIY 435 (529)
Q Consensus 366 ~-~~~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 435 (529)
. .|..++| +..++++.+. .| +...|..+..++...| ++++|++.+.++...| +...+..++..+.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 7 5654666 4788888754 56 5778888888898888 6899999988874455 577888888888876
Q ss_pred C---------CHHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 009663 436 G---------RTDFAEFAVKKL-IEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 436 g---------~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 469 (529)
| ..++|+++++++ .+.+|.....|..++..+...
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 4 258999999999 899999889998887766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=118.47 Aligned_cols=217 Identities=12% Similarity=-0.053 Sum_probs=115.8
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH--
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK----CGSLKEARRAFDRNSKK-RLTSWNSMINSFAL-- 328 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~-- 328 (529)
+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+. +...+..+...|..
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCC
Confidence 3333344444444444444444321 22333444444444 45555555555443222 33344555555555
Q ss_pred --cCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 009663 329 --HGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH----GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR 402 (529)
Q Consensus 329 --~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 402 (529)
.+++++|+..|++..+ .+ +...+..+...+.. .+++++|..+|++..+. + +...+..+...|..
T Consensus 89 ~~~~~~~~A~~~~~~a~~---~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACD---LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDA 158 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHH---cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHc
Confidence 5566666666665554 32 34455555555555 56666666666665542 2 34455555555555
Q ss_pred ----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cC
Q 009663 403 ----AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE----LG 470 (529)
Q Consensus 403 ----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 470 (529)
.+++++|..+|++.--..+...+..+...+.. .+++++|+..++++.+.+| +..+..++.+|.+ .|
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~ 236 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTR 236 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCccc
Confidence 66666666666655111244555566666666 6666666666666666544 4556666666666 66
Q ss_pred CHHHHHHHHHHHhhCCC
Q 009663 471 KWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~~ 487 (529)
++++|...+++..+.|.
T Consensus 237 ~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 237 NEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CSTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66667666666665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=137.92 Aligned_cols=266 Identities=14% Similarity=0.005 Sum_probs=175.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-H----HHHHHHHHHhhccCCchHHHHHHHHHHHh----C-CCCC
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-Q----VTLVCALSAIGHTGMLQLGKVIHGYVYRN----G-LDLD 284 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 284 (529)
+..+...+...|++++|+..|+++... .|+ . ..+..+..++...|++++|...++++.+. + ....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 334555666677777777777766543 222 1 34555666666677777777776666543 1 1122
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCC-----------------hhHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSKK---------RLTSWNSMINSFALHGQ-----------------SENSICV 338 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~ 338 (529)
..++..+...|...|++++|...|++.... ...++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 345666777777777777777777654321 12367777777888888 7888887
Q ss_pred HHHHhhccc-CCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHH
Q 009663 339 FEEMMRCQD-HNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEV 412 (529)
Q Consensus 339 ~~~m~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 412 (529)
+++..++.. .+..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 777654111 11111 2245667777888888999888888887643111111 23677888888899999998888
Q ss_pred HHhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHH
Q 009663 413 VKGM-KI---EP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN------NGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 413 ~~~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
+++. .. .. ...++..+...+...|++++|...++++++..+. ...++..++.+|.+.|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 8776 11 11 1456777888888999999999999988885432 244778888899999999999999
Q ss_pred HHHHhhC
Q 009663 479 RKMLKDR 485 (529)
Q Consensus 479 ~~~~~~~ 485 (529)
+++..+.
T Consensus 366 ~~~al~~ 372 (411)
T 4a1s_A 366 AEQHLQL 372 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888644
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=122.24 Aligned_cols=228 Identities=9% Similarity=-0.023 Sum_probs=186.5
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCh----hHHHHHHHH
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRL----TSWNSMINS 325 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 325 (529)
.+......+...|++++|...++.+.+..+. +..++..+..+|...|++++|+..|++..+ .+. ..|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455667788999999999999999987653 556888899999999999999999987654 222 258899999
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG 404 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 404 (529)
+...|++++|+..|++..+ . .+.+...+..+...+...|++++|...+++..+ ..| +...+..+...+...+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD---R-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH---H-STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHh---c-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999976 2 223457888999999999999999999999884 355 5777777773444556
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCC
Q 009663 405 RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR---TDFAEFAVKKLIEID---PNN-----GGYGIMLANIYGELGK 471 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~ 471 (529)
++++|.+.|+++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..++..++.+|.+.|+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999988 4455 47788888888888888 888999999999865 532 2578889999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 009663 472 WDEVRKVRKMLKDRNA 487 (529)
Q Consensus 472 ~~~a~~~~~~~~~~~~ 487 (529)
+++|...++++.+...
T Consensus 237 ~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 237 KVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9999999999987653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=123.09 Aligned_cols=194 Identities=11% Similarity=0.074 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN 362 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~ 362 (529)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+ . .+.+...+..+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~la~ 99 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE---L-DSSAATAYYGAGN 99 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---c-CCcchHHHHHHHH
Confidence 3444455555555555555555554432 2334555556666666666666666666553 2 1224455555666
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666665431 224555666666666666666666666665 222 245566666666666666666
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
|+..++++.+..|+++.++..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666666666666666666666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-13 Score=116.42 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~ 363 (529)
++..+...+...|++++|...|+++. ..+...+..+...+...|++++|...++++.+ . .+.+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~-~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS---I-KPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH---h-CCCChHHHHHHHHH
Confidence 34444555555555555555554432 12334555566666666666666666666654 2 12244556666666
Q ss_pred HhCC-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 009663 364 CTHG-GLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 364 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 439 (529)
+... |++++|...++++.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6677 777777777777664 123332 456666667777777777777777665 2233 4666667777777777777
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 440 FAEFAVKKLIEIDP-NNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 440 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+|...++++.+..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777777 67777777777777777777777777776544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=122.87 Aligned_cols=211 Identities=13% Similarity=0.039 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 009663 251 VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFA 327 (529)
Q Consensus 251 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 327 (529)
..+..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...|+++. ..+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3344445555556666666666666555432 244556666666677777777777766543 234557777788888
Q ss_pred HcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 009663 328 LHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 328 ~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 407 (529)
..|++++|...++++.+ . .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 103 ~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALR---A-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HTTCHHHHHHHHHHHHH---H-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCH
T ss_pred HhccHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888875 2 23356678888888899999999999999988542 336778888999999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 408 EALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 408 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
+|...++++ ... .+..++..+...+...|++++|...++++.+..|+++..+..+......
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999887 333 4678899999999999999999999999999999998888777655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-13 Score=120.08 Aligned_cols=198 Identities=8% Similarity=-0.063 Sum_probs=172.2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
...+..+...+...|++++|...|+++. ..+...+..+...+...|++++|.+.++++.+ .. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA---SD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HC-cCcHHHHHHHH
Confidence 4567788899999999999999998764 34566899999999999999999999999976 32 23667888889
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRT 438 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 438 (529)
..+...|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999985 23456 4678888999999999999999999987 3334 688899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 439 DFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 439 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++|...++++.+..|++...+..++.++...|++++|.++++++.+...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999987643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=131.88 Aligned_cols=271 Identities=15% Similarity=0.083 Sum_probs=122.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccC-CCCC-CHHHH
Q 009663 183 SWTAMISGYTRVGDIKNAASLFDSMPD--R-D----VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD-NIRP-NQVTL 253 (529)
Q Consensus 183 ~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~p-~~~~~ 253 (529)
.+......+...|++++|...|++..+ | + ..+|..+...|...|++++|...+++....... +..| ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455555666666666666655432 1 2 134555556666666666666666665432100 0011 12234
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCC-CC----ccHHHHHHHHHHhCCC--------------------HHHHHHHH
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLD-LD----SFISNALIDMYGKCGS--------------------LKEARRAF 308 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 308 (529)
..+...+...|++++|...++++.+.... ++ ..++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44445555556666666555555432110 00 2244445555555555 55555554
Q ss_pred hhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHH
Q 009663 309 DRNSK-----KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYF 377 (529)
Q Consensus 309 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~ 377 (529)
++... .+ ..++..+...|...|++++|+..+++..+..+....+ ...++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 43211 01 1244445555555555555555555554421111000 0113444444555555555555555
Q ss_pred HHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 378 KLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEPD----EVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 378 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
++..+...-.++ ..++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 554421100011 234444555555555555555555443 0 0111 334444444555555555555555
Q ss_pred HHHHhcCC
Q 009663 446 KKLIEIDP 453 (529)
Q Consensus 446 ~~~~~~~p 453 (529)
+++.++.+
T Consensus 331 ~~al~~~~ 338 (406)
T 3sf4_A 331 EKHLEISR 338 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=117.31 Aligned_cols=225 Identities=12% Similarity=-0.027 Sum_probs=179.7
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc----cCCchHHHHHHHHHHHhCCCCCcc
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH----TGMLQLGKVIHGYVYRNGLDLDSF 286 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 286 (529)
++.++..+...|...|++++|+..|++... +.+...+..+...+.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 456677777888888888888888888763 2234566667777777 888888888888888775 566
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHhhcccCCCCCCHHHH
Q 009663 287 ISNALIDMYGK----CGSLKEARRAFDRNSKK-RLTSWNSMINSFAL----HGQSENSICVFEEMMRCQDHNIRPDGVTF 357 (529)
Q Consensus 287 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~p~~~~~ 357 (529)
.+..+...|.. .+++++|+..|++..+. +...+..+...|.. .+++++|+..|++..+ .+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~---~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh---cC---cHHHH
Confidence 77778888888 88999999888876543 55678888888888 8999999999999886 54 45566
Q ss_pred HHHHHHHhC----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHH
Q 009663 358 ISLLNACTH----GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGM-KIEPDEVVWGSL 428 (529)
Q Consensus 358 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l 428 (529)
..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++. ...| ...+..+
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l 224 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 677777776 89999999999998854 256778888899999 99999999999987 3333 7778888
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 009663 429 LNGCKI----YGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 429 ~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 455 (529)
...+.. .+++++|.+.++++.+.+|++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888888 899999999999999998853
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-12 Score=112.21 Aligned_cols=206 Identities=11% Similarity=-0.018 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSF 326 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 326 (529)
...+..+...+...|++++|...++.+.+..+ .+..++..+..+|...|++++|...|++.. ..+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33444555555555666666666655555432 234455666666666677777776666543 23455677777888
Q ss_pred HHc-CChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 327 ALH-GQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 327 ~~~-~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
... |++++|...++++.+ .+..|+ ...+..+..++...|++++|...++++.+. .| +...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA---DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT---STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHc---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHc
Confidence 888 888888888888864 333443 566777888888899999999999988754 34 577888899999999
Q ss_pred CChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 404 GRFEEALEVVKGM-KIE--PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 404 g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999887 323 4677777777788899999999999999999999887766544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=128.27 Aligned_cols=227 Identities=10% Similarity=0.060 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC-HHHHHHHHhhcCC---CChhHHHHHHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS-LKEARRAFDRNSK---KRLTSWNSMINS 325 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 325 (529)
...+..+..++...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|++... .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345677777888999999999999999998754 67788999999999997 9999999998653 456799999999
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh-
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGR- 402 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~- 402 (529)
+...|++++|+..|+++.+ +.| +...|..+..++...|++++|+..++++.+. .| +...|+.+..++.+
T Consensus 176 ~~~~g~~~eAl~~~~kal~-----ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN-----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHH-----hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHh
Confidence 9999999999999999976 334 6678888999999999999999999999965 56 68899999999999
Q ss_pred cCChHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---
Q 009663 403 AGRFEEA-----LEVVKGM-KIEP-DEVVWGSLLNGCKIYG--RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG--- 470 (529)
Q Consensus 403 ~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--- 470 (529)
.|..++| ++.+++. .+.| +...|..+...+...| ++++|++.+.++ +.+|+++.++..++.+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccc
Confidence 6665777 4777776 5556 5788888888888888 689999999998 889999999999999999875
Q ss_pred ------CHHHHHHHHHHH-hhCC
Q 009663 471 ------KWDEVRKVRKML-KDRN 486 (529)
Q Consensus 471 ------~~~~a~~~~~~~-~~~~ 486 (529)
..++|+.+++++ .+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=130.94 Aligned_cols=348 Identities=10% Similarity=-0.006 Sum_probs=235.4
Q ss_pred HHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCH---HHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 009663 119 HVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDI---GIARKLFDEMSDRNVVSWTAMISGYTRVG 195 (529)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 195 (529)
.+...+.+.|++++|.++|+...+.| +...+..|..+|...| +. ++|.+.|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 35566778899999999999998887 3445556667777778 77 89999999988777777888877666655
Q ss_pred -----CHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHH
Q 009663 196 -----DIKNAASLFDSMPDR-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLG 269 (529)
Q Consensus 196 -----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 269 (529)
+.++|...|++..++ +...+..|...|...+..+++.+.++.+......+. ......+...+...+.++.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccC
Confidence 788999999886554 456888889999888775554444443332211122 33555666667777766665
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHhCC---CHHHHHHHHhhcCCCC---hhHHHHHHHHHHHc----CChhHHHHHH
Q 009663 270 KVIHGYVYRNGLDLDSFISNALIDMYGKCG---SLKEARRAFDRNSKKR---LTSWNSMINSFALH----GQSENSICVF 339 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~----~~~~~a~~~~ 339 (529)
........+.-...++..+..|..+|...| +.++|+..|++..+.+ ...+..+...|... +++++|+.+|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 555444444333344558888999999999 8999999998765433 33446777777655 6899999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHH-H--hCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----ChHHHHH
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNA-C--THGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG-----RFEEALE 411 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 411 (529)
++. . +-+...+..+... + ...+++++|..+|++..+. | ++..+..|...|. .| ++++|.+
T Consensus 241 ~~a-----a--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 241 EKI-----A--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHH-----G--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHH-----c--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 997 3 2345556666555 3 4589999999999998854 3 6677778888887 55 9999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 009663 412 VVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE----LGKWDEVRKVRKMLK 483 (529)
Q Consensus 412 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 483 (529)
+|++.- .-+...+..+...|.. ..++++|..+|+++.+. .++.....|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999988 6678888888877776 34999999999998774 467888899998875 458999999999999
Q ss_pred hCCCc
Q 009663 484 DRNAY 488 (529)
Q Consensus 484 ~~~~~ 488 (529)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 88863
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=131.41 Aligned_cols=267 Identities=17% Similarity=0.043 Sum_probs=187.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC-----HHHHHHHHHHhhccCCchHHHHHHHHHHHh----CCC-CC
Q 009663 215 WNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN-----QVTLVCALSAIGHTGMLQLGKVIHGYVYRN----GLD-LD 284 (529)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 284 (529)
+......+...|++++|+..|+++... .|+ ...+..+...+...|++++|...++++.+. +.. ..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 344456677777777777777777643 222 245566666777777777777777765543 111 12
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hhHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSK-----KR----LTSWNSMINSFALHGQ--------------------SENS 335 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a 335 (529)
..++..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 44566777788888888888888766432 11 2267777888888888 8888
Q ss_pred HHHHHHHhhccc-CCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 009663 336 ICVFEEMMRCQD-HNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEA 409 (529)
Q Consensus 336 ~~~~~~m~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 409 (529)
...+++...... .+..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888877654211 11111 2345777778888899999999999887643111111 34778888999999999999
Q ss_pred HHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCHHHH
Q 009663 410 LEVVKGM-K---IEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN------GGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 410 ~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 475 (529)
...+++. . ..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999876 1 1122 5577788888999999999999999998865432 44788899999999999999
Q ss_pred HHHHHHHhhCC
Q 009663 476 RKVRKMLKDRN 486 (529)
Q Consensus 476 ~~~~~~~~~~~ 486 (529)
...+++..+..
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-13 Score=116.93 Aligned_cols=191 Identities=13% Similarity=0.042 Sum_probs=95.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHH
Q 009663 211 DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISN 289 (529)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 289 (529)
++..+..+...+.+.|++++|+..|++... ..| +...+..+..++...|++++|...++++++..+. +...+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~ 77 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK-----ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYM 77 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 444566666667777777777777776652 233 3455556666666666666666666666665432 344555
Q ss_pred HHHHHHHhC-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH
Q 009663 290 ALIDMYGKC-----------GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV 355 (529)
Q Consensus 290 ~l~~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~ 355 (529)
.+..++... |++++|+..|++..+ .+...|..+..++...|++++|+..|++..+ .. .+..
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~--~~~~ 152 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA---LE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC--CCHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cc--cchH
Confidence 555565555 555555555544321 2233444455555555555555555555544 22 3444
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
.+..+..++...|++++|...|+++.+. .| +...+..+...+.+.|++++|.+.|++
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444555555555555555555555432 23 344444445555555555555544443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-13 Score=128.30 Aligned_cols=279 Identities=14% Similarity=0.036 Sum_probs=176.2
Q ss_pred CcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHH
Q 009663 113 NQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQY---PVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMIS 189 (529)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~ 189 (529)
....+......+...|++++|...++.+.+.+.... ..++..+..++...| ++++|...+++...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~----------- 75 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLT----------- 75 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-----------
Confidence 344445555566677777777777777776643211 245666677777777 77777776655321
Q ss_pred HHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccC-C-CCCCHHHHHHHHHHhhccCC
Q 009663 190 GYTRVGDIKNAASLFDSMPDR--DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD-N-IRPNQVTLVCALSAIGHTGM 265 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~p~~~~~~~ll~~~~~~~~ 265 (529)
+......+ ...++..+...|...|++++|+..+++....... + ......++..+...+...|+
T Consensus 76 -------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 76 -------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 11111111 1234555556666666666666666555421000 0 00012345555566666666
Q ss_pred --------------------chHHHHHHHHHHHh----CC-CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC
Q 009663 266 --------------------LQLGKVIHGYVYRN----GL-DLDSFISNALIDMYGKCGSLKEARRAFDRNSK-----KR 315 (529)
Q Consensus 266 --------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 315 (529)
++.|...+....+. +. .....++..+...|...|++++|...|++..+ ++
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 66776666665432 11 11233567778888888999988888876542 11
Q ss_pred ----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC-CCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 316 ----LTSWNSMINSFALHGQSENSICVFEEMMRCQDH-NIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 316 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
..++..+...|...|++++|...+++....... +..+. ..++..+...+...|++++|...+++..+...-.++
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 237888899999999999999999998752111 11111 456778888999999999999999988753211122
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 390 ----IEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 390 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
..++..+...|...|++++|.+.+++.
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999999998875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-13 Score=121.09 Aligned_cols=237 Identities=7% Similarity=-0.148 Sum_probs=167.5
Q ss_pred cCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCc
Q 009663 194 VGDIKNAASLFDSMPDR-------DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGML 266 (529)
Q Consensus 194 ~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 266 (529)
.|++++|+..|+++.+. +..+|..+...+...|++++|+..|+++... .+.+...+..+..++...|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCH
Confidence 46677777777665432 3456777888888888888888888887743 233567777888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 009663 267 QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--KRLTSWNSMINSFALHGQSENSICVFEEMMR 344 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 344 (529)
++|...++.+.+..+. +..++..+..+|...|++++|...|+++.+ ++.......+..+...|++++|...+.+...
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888888887543 567788888888888999999888887643 3333333444455667899999999987764
Q ss_pred cccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 009663 345 CQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KI 418 (529)
Q Consensus 345 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 418 (529)
. .+++...+. ++..+...++.++|...++.+.. ..|+ ...+..+...|.+.|++++|...|++. ..
T Consensus 173 ---~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 ---K-SDKEQWGWN-IVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp ---H-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---c-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 233333443 66667777888889888888763 2332 577888999999999999999999988 65
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009663 419 EPDEVVWGSLLNGCKIYGRTDFAEFAV 445 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g~~~~A~~~~ 445 (529)
.|+. +.....++...|++++|++.+
T Consensus 245 ~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6643 223355667788888888776
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=109.19 Aligned_cols=165 Identities=17% Similarity=0.116 Sum_probs=139.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhH
Q 009663 315 RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEH 392 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 392 (529)
+...|..+...|...|++++|+..|++..+ ..| +...+..+..++...|++++|...+..+... .| +...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHH
Confidence 345788888888889999999999998875 234 5567888888889999999999999988754 34 5677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+..+...+...++++.|...+.+. ...| +...+..+...+...|++++|++.|+++++.+|+++.++..++.+|.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 778888889999999999999887 3344 67888889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhCCC
Q 009663 471 KWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 471 ~~~~a~~~~~~~~~~~~ 487 (529)
++++|+..+++..+...
T Consensus 156 ~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEE 172 (184)
T ss_dssp CHHHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHhCCc
Confidence 99999999999887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=134.29 Aligned_cols=191 Identities=10% Similarity=0.004 Sum_probs=157.6
Q ss_pred CccHHHHHHHHHHhCCCH-HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH
Q 009663 284 DSFISNALIDMYGKCGSL-KEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS 359 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ 359 (529)
+...+..+..+|...|++ ++|+..|++.. ..+...|..+..+|...|++++|+..|++..+ ..|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT-----HCKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCHHHHHH
Confidence 444555556666666666 66666665543 23455778888888888999999999999865 4577788888
Q ss_pred HHHHHhCC---------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC
Q 009663 360 LLNACTHG---------GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA--------GRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 360 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p 420 (529)
+...+... |++++|...++++.+. .| +...|..+..+|... |++++|++.|++. .+.|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 99999999 9999999999999864 45 588899999999998 9999999999988 4455
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009663 421 ----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482 (529)
Q Consensus 421 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 482 (529)
+...|..+..++...|++++|.+.|+++.+++|+++.++..++.++...|++++|+..+.++
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-10 Score=114.63 Aligned_cols=416 Identities=9% Similarity=0.005 Sum_probs=285.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC---CCChhHHHHHHHHHhcCCCC---hHHHHHHHHHH
Q 009663 31 QLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT---TPNTYLYTAMITAYASQPAH---ASSAFSLYRDM 104 (529)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~---~~~a~~~~~~m 104 (529)
..++...... +-|...+..++..+.+.+ .++.|+.+|+++. +.....|...+..-.+. ++ .+.+..+|++.
T Consensus 53 ~~lE~~l~~n-p~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEEQ-PTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHH
Confidence 3444444443 568999999999999988 9999999999886 45667788888888887 88 99999999999
Q ss_pred HHCCCCCCCcchHHHHHHhCccCCCc--------hHHHHHHHHHHHh-CC-CC-chhHHHHHHHHHHh---------cCC
Q 009663 105 VRRGQPQPNQFIYPHVLKSCPDVLES--------RGTKMVHTQIVKS-GF-EQ-YPVVETALVNSYSR---------SGN 164 (529)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~-~~~~~~~l~~~~~~---------~g~ 164 (529)
+.....+|+...|..-+....+.++. +...++|+.++.. |. .+ +...|...+..... .+
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~- 208 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ- 208 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH-
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh-
Confidence 98752138888887777655444443 3345778777653 55 44 34678877776542 34
Q ss_pred CHHHHHHHHhhCCC-CCh---hhHH---HHHHHHH----------hcCCHHHHHHHHhh-------CCC-----------
Q 009663 165 DIGIARKLFDEMSD-RNV---VSWT---AMISGYT----------RVGDIKNAASLFDS-------MPD----------- 209 (529)
Q Consensus 165 ~~~~A~~~~~~~~~-~~~---~~~~---~ll~~~~----------~~g~~~~A~~~~~~-------~~~----------- 209 (529)
+++.+.++|+.... |.. .+|. .+...+. ...+++.|...+.+ +..
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 57889999999876 321 2332 2221110 01123334444432 111
Q ss_pred ---C--C------hhhHHHHHHHHHhCC-------ChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH-
Q 009663 210 ---R--D------VPAWNSVIAGCTQNG-------LFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK- 270 (529)
Q Consensus 210 ---~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~- 270 (529)
| + ...|...+..--..+ ..+.+..+|++.... .+-....|...+.-+...|+.+.|.
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 0 123555444333322 123456778887753 4446667777777777889999996
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC-------------CC------------hhHHHHHHHH
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK-------------KR------------LTSWNSMINS 325 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~ 325 (529)
.+++...... +.+...+-..+....+.|++++|.++|+++.. |. ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999998754 34555677788888999999999999987653 21 1268888888
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhC-CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH-GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG 404 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 404 (529)
..+.|+.+.|..+|.++.+ ....+....|...+..-.+ .++.+.|..+|+...+.+ +.+...+...++.....|
T Consensus 444 erR~~~l~~AR~vf~~A~~---~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRR---LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHH---TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCC
Confidence 8889999999999999976 3111123334333322223 356999999999999763 335667778888888999
Q ss_pred ChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 405 RFEEALEVVKGM-KIEP----DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++.+-.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 999999999997 3334 3567888888888999999999999999999997654443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-11 Score=119.12 Aligned_cols=213 Identities=8% Similarity=-0.008 Sum_probs=137.9
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHH-HHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 304 ARRAFDRNSK---KRLTSWNSMINSFALHGQSENSI-CVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 304 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
+..+|++... .....|...+..+...|+.++|. .+|++... .++.+...+...+......|+++.|..+|+.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~----~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ----CIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4445555432 24557777777777788888886 88888763 2334555566667777777888888888888
Q ss_pred hHHhcC--------CCCC------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CC--CCCHHHHHHHHHHHHHc-
Q 009663 380 MTKTYR--------IEPQ------------IEHYGCLVDLLGRAGRFEEALEVVKGM-KI--EPDEVVWGSLLNGCKIY- 435 (529)
Q Consensus 380 ~~~~~~--------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~l~~~~~~~- 435 (529)
+.+... -.|+ ..+|...+....+.|..+.|..+|.++ .. ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 775310 0131 235777777777788888888888877 22 12233443333333333
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc-CCcccEEEECCeEEEEeeCCCCCCC
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAYK-TPGCSWIEVDKQVHQFHSLDKTHPR 514 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (529)
++.+.|..+|+++++..|+++..+...+......|+.+.|..+|++.......+ ....-| ..|+.-...||.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw-------~~~~~fE~~~G~ 556 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF-------QKVIFFESKVGS 556 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH-------HHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHHHHcCC
Confidence 447888888888888888888887777787778888888888888887665421 111112 244555567788
Q ss_pred hHHHHHHHHHHHh
Q 009663 515 TEEIYDALESMVA 527 (529)
Q Consensus 515 ~~~~~~~~~~~~~ 527 (529)
.+++.++.+++.+
T Consensus 557 ~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 557 LNSVRTLEKRFFE 569 (679)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-13 Score=127.43 Aligned_cols=202 Identities=14% Similarity=0.043 Sum_probs=132.2
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhC-----CCCCccHHHHHHHHHHhCCC-----------------HHHHHHHHh
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNG-----LDLDSFISNALIDMYGKCGS-----------------LKEARRAFD 309 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 309 (529)
.+..+...+...|++++|...++++.+.. ......++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 33444444455555555555554443321 01122345555666666666 666666655
Q ss_pred hcCC-------C--ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009663 310 RNSK-------K--RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFK 378 (529)
Q Consensus 310 ~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~ 378 (529)
+..+ + ....+..+...|...|++++|+..+++..+.......+ ....+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4321 1 12367777888888899999888888876521111111 12367778888999999999999998
Q ss_pred HhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009663 379 LMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI---EP----DEVVWGSLLNGCKIYGRTDFAEFAVK 446 (529)
Q Consensus 379 ~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~ 446 (529)
+......-.. ....+..+...|...|++++|...+++. .+ .+ ...++..+...+...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8765321111 1567788899999999999999999877 11 11 24577788889999999999999999
Q ss_pred HHHhcCC
Q 009663 447 KLIEIDP 453 (529)
Q Consensus 447 ~~~~~~p 453 (529)
++.++.+
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=124.10 Aligned_cols=226 Identities=11% Similarity=-0.019 Sum_probs=138.5
Q ss_pred HHhhccCCchHHHHHHHHHHHh----CCCC-CccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC-----hhHHHHH
Q 009663 258 SAIGHTGMLQLGKVIHGYVYRN----GLDL-DSFISNALIDMYGKCGSLKEARRAFDRNSK-----KR-----LTSWNSM 322 (529)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 322 (529)
..+...|++++|...++++.+. +..+ ...++..+..+|...|++++|...+++..+ .+ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666666543 1111 224556666666677777666666654321 11 1256667
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCC-CCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh---cCCCC-ChhHHHHH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHN-IRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKT---YRIEP-QIEHYGCL 396 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l 396 (529)
...|...|++++|+..+++..+..+.. ..+ ...++..+..++...|++++|...+++..+. .+..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 777777777777777777765421111 111 1135666777777888888888888776641 11213 35567777
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KI-----EPD-EVVWGSLLNGCKIYGR---TDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
...|.+.|++++|...+++. .+ .|. ...+..+...+...|+ +++|+..+++. ...|....++..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888888888888887765 11 121 2234556666777777 66666666665 22233455777788888
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 009663 467 GELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~ 484 (529)
...|++++|...+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888887754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=124.39 Aligned_cols=241 Identities=10% Similarity=0.080 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHhhhcccC----CCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHh------CC-
Q 009663 213 PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSD----NIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN------GL- 281 (529)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 281 (529)
.++..+...+...|++++|+.+|+++...... ..+.....+..+..++...|++++|...++++.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666666666677777777777666531000 01112233444455555555555555555554432 11
Q ss_pred CCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHHH
Q 009663 282 DLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVTF 357 (529)
Q Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~~ 357 (529)
+.... ++..+...|...|++++|...++++.+.... +..| ....+
T Consensus 108 ~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 11122 4444445555555555555555554431000 1112 23345
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTY-----RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-K---------IEPD 421 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~ 421 (529)
..+...+...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.++++ . ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 556666666677777766666665320 1012 2445666666677777777776666655 1 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 422 -------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 422 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
...+..+...+...+.+.++...++++....|....++..++.+|.+.|++++|..++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222233344555666677777777777777778888888888888888888888877754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=120.32 Aligned_cols=240 Identities=15% Similarity=0.075 Sum_probs=147.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhccc-CCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC-CC----cc
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVS-DNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD-LD----SF 286 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 286 (529)
.+..+...|...|++++|++.+++...... .+..| ....+..+...+...|++++|...+++..+.... ++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 344555555555555555555554332100 01111 1234444555555666666666666555432111 01 22
Q ss_pred HHHHHHHHHHhCCC--------------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChhHHHH
Q 009663 287 ISNALIDMYGKCGS--------------------LKEARRAFDRNSK-------K--RLTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 287 ~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~ 337 (529)
++..+...|...|+ +++|...+++... + ....+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55556666666666 6666666654321 1 12367777888888899999998
Q ss_pred HHHHHhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHH
Q 009663 338 VFEEMMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALE 411 (529)
Q Consensus 338 ~~~~m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 411 (529)
.+++..+.......+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888876521111111 1236777788888899999999999887643111111 5577888889999999999999
Q ss_pred HHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 412 VVKGM-KI---EPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 412 ~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
.+++. .. ..+ ..++..+...+...|++++|...++++.++.+
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 98876 11 112 45677888899999999999999999998765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-12 Score=105.98 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=135.5
Q ss_pred CccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 009663 284 DSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISL 360 (529)
Q Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 360 (529)
+..+|..+...|...|++++|+..|++.. ..+..+|..+..+|...|++++|+..+..... . .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---L-DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c-CchhHHHHHHH
Confidence 45677778888888888888888887654 34566888888888999999999999988864 2 22345666777
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 437 (529)
...+...++++.+...+.+..+. .| +...+..+...|.+.|++++|++.|++. ...| +..+|..+..++.+.|+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 77888899999999999998854 44 5778889999999999999999999987 4455 68889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 009663 438 TDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~ 456 (529)
+++|++.|+++++++|+++
T Consensus 157 ~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCccCH
Confidence 9999999999999998654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=103.73 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.|..+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 83 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 455666677777777777777777743 122355667777777778888888888888877541 23567777888
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
..+...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|+++.++..++.++...|++++|
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888877 22 346778888888889999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 009663 476 RKVRKMLKDRNA 487 (529)
Q Consensus 476 ~~~~~~~~~~~~ 487 (529)
...++++.+...
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999988876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-10 Score=106.34 Aligned_cols=217 Identities=10% Similarity=0.014 Sum_probs=140.1
Q ss_pred hHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhh-------ccCCc-------hHHHHHHHHHHHh-CCCCCccHHHHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRPNQVTLVCALSAIG-------HTGML-------QLGKVIHGYVYRN-GLDLDSFISNALID 293 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 293 (529)
++|...|++.... .+.+...|..+...+. ..|++ ++|..+|++.++. .+ -+...|..++.
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 5677777777642 2334445555555443 34665 7777777777763 32 24456777777
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---Chh-HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHH-hCCC
Q 009663 294 MYGKCGSLKEARRAFDRNSKK---RLT-SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNAC-THGG 368 (529)
Q Consensus 294 ~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~-~~~~ 368 (529)
.+.+.|++++|..+|++..+. +.. .|..++..+.+.|++++|..+|++..+ .. +++...|....... ...|
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~-p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---ST-TCCTHHHHHHHHHHHHTSC
T ss_pred HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cC-CCCHHHHHHHHHHHHHHcC
Confidence 777777777777777765432 233 677777777777888888888887764 22 22334444333222 2357
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-K---IEP--DEVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~ 442 (529)
++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++....+.|+.+.|.
T Consensus 184 ~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 184 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888777542 224667777777777778888888887776 2 244 3566777777777778888888
Q ss_pred HHHHHHHhcCCCCc
Q 009663 443 FAVKKLIEIDPNNG 456 (529)
Q Consensus 443 ~~~~~~~~~~p~~~ 456 (529)
.+++++.+..|++.
T Consensus 262 ~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 262 KVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHccccc
Confidence 88888877777644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-10 Score=108.15 Aligned_cols=265 Identities=10% Similarity=-0.008 Sum_probs=161.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH----HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-C----ccHH
Q 009663 218 VIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ----VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL-D----SFIS 288 (529)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~ 288 (529)
....+...|++++|...+++.... ....+. ..+..+...+...|+++.|...+++..+..... + ..++
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344556677777777777776543 111111 134444555666777777777777665432111 1 1224
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC----------CC-hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK----------KR-LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVT 356 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~ 356 (529)
..+...+...|++++|...+++... +. ...+..+...+...|++++|...+++........-.+ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5566677778888887777765321 11 1245566777788888888888888776521111111 2345
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYG-----CLVDLLGRAGRFEEALEVVKGM-KIEPD-----EVVW 425 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 425 (529)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|..++++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66677777788888888888887764311111111121 2334467888888888888877 22221 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPN------NGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..+...+...|++++|...++++....+. ...++..++.++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66677788888888888888888764321 1236666777888888888888888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=128.68 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHH
Q 009663 316 LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHY 393 (529)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 393 (529)
..+|+.+...|.+.|++++|++.|++..+ +.| +...+..+..++.+.|++++|+..|+++.+. .| +...|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~-----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~ 80 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 34777888888888888888888888865 334 4567888888888889999999999888754 56 47788
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
..+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|++.|+++++++|+++.++..++.+|...|+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88889999999999999998887 5556 577888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 009663 472 WDEVRKVRKMLKD 484 (529)
Q Consensus 472 ~~~a~~~~~~~~~ 484 (529)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=117.42 Aligned_cols=234 Identities=10% Similarity=0.005 Sum_probs=170.4
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhcccCCCC--C-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC------CccHH
Q 009663 218 VIAGCTQNGLFSDAISFFRRMGMEVSDNIR--P-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL------DSFIS 288 (529)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 288 (529)
....+...|++++|+..|++...... ... + ...++..+..++...|+++.|...+.+..+..... ...++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLI-FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 55667778888888888888763210 111 1 23456677777888888888888888877542211 13467
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC-----CCh----hHHHHHHHHHHHcCChhHHHHHHHHHhhcccC-CCCC-CHHHH
Q 009663 289 NALIDMYGKCGSLKEARRAFDRNSK-----KRL----TSWNSMINSFALHGQSENSICVFEEMMRCQDH-NIRP-DGVTF 357 (529)
Q Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p-~~~~~ 357 (529)
+.+..+|...|++++|...|++..+ .+. .++..+..+|...|++++|+..+++..+.... +..| ...++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 7788889999999999988876542 111 37888899999999999999999988752111 3323 35668
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHH
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTY---RIEPQIEHYGCLVDLLGRAGR---FEEALEVVKGMKIEPD-EVVWGSLLN 430 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~ 430 (529)
..+...+...|++++|...+++..+.. +-+.....+..+...|...|+ +++|+.++++.+..|+ ...+..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888899999999999999999877431 111123345678888899999 9999999999864553 456777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 009663 431 GCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
.|...|++++|...++++.++.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998854
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.7e-11 Score=109.26 Aligned_cols=213 Identities=10% Similarity=0.033 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHhCCCCCccHHHHHHHHHH-------hCCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 009663 267 QLGKVIHGYVYRNGLDLDSFISNALIDMYG-------KCGSL-------KEARRAFDRNSK---K-RLTSWNSMINSFAL 328 (529)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 328 (529)
++|..+|+++++..+ .+...|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678889998888653 36667777777765 35886 899999987654 2 45589999999999
Q ss_pred cCChhHHHHHHHHHhhcccCCCCCCH-H-HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH-hcC
Q 009663 329 HGQSENSICVFEEMMRCQDHNIRPDG-V-TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLG-RAG 404 (529)
Q Consensus 329 ~~~~~~a~~~~~~m~~~~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g 404 (529)
.|++++|..+|+++.+ +.|+. . .|..+...+.+.|++++|..+|+++.+. .| +...|........ ..|
T Consensus 112 ~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999975 45543 3 7888888899999999999999999843 34 4555554444322 379
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCCHHHHHHH
Q 009663 405 RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI---DPN-NGGYGIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~ 478 (529)
++++|..+|++. ...| +...|..++..+.+.|++++|..+|+++++. .|+ ...++..++..+.+.|+.++|..+
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988 3334 6888999999999999999999999999995 453 667888899999999999999999
Q ss_pred HHHHhhCCCc
Q 009663 479 RKMLKDRNAY 488 (529)
Q Consensus 479 ~~~~~~~~~~ 488 (529)
++++.+....
T Consensus 264 ~~~a~~~~p~ 273 (308)
T 2ond_A 264 EKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHccc
Confidence 9999877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-10 Score=107.58 Aligned_cols=232 Identities=9% Similarity=0.009 Sum_probs=127.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCC----HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCC------CCcc
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPN----QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLD------LDSF 286 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~ 286 (529)
.....+...|++++|+..|++...... ..++ ..++..+..++...|+++.|...+.++.+.... ....
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELP--FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 345566778888888888888763210 1122 335666666777778888887777776653211 0133
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC-CCCCCHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSK-----KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDH-NIRPDGVT 356 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p~~~~ 356 (529)
+++.+..+|...|++++|...|++..+ .+ ..++..+..+|...|++++|+..+++..+.... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 555666777777777777776654332 11 125555666666666666666666665431111 22222344
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGRAGR---FEEALEVVKGMKIEPD-EVVWGSLL 429 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~ 429 (529)
+..+...+.+.|++++|...+++..+...-.++ ...+..+...|...|+ +.+|+.++++.+..|+ ...+..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555666666666666666666665543211111 2234444445555555 5556666655432222 23344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 009663 430 NGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~ 450 (529)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 555556666666666555554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-11 Score=119.91 Aligned_cols=210 Identities=9% Similarity=-0.022 Sum_probs=158.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCc-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHH
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLES-RGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIAR 170 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~ 170 (529)
+.+++++..++...... +.+...+..+...+...|++ ++|.+.++++++.. +.+...|..+..+|...| ++++|.
T Consensus 82 ~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g-~~~~A~ 157 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG-DVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHH
Confidence 34667777787766653 55778888888888999999 99999999998875 336778888999999999 899999
Q ss_pred HHHhhCCC--CChhhHHHHHHHHHhc---------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC--------CCh
Q 009663 171 KLFDEMSD--RNVVSWTAMISGYTRV---------GDIKNAASLFDSMPD---RDVPAWNSVIAGCTQN--------GLF 228 (529)
Q Consensus 171 ~~~~~~~~--~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~ 228 (529)
+.|++..+ |+...+..+...+... |++++|+..|++..+ .+...|..+..+|... |++
T Consensus 158 ~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 158 TCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99988765 6666777777777777 888888888877542 3566777777777777 778
Q ss_pred hHHHHHHHHhhhcccCCCCC----CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHH
Q 009663 229 SDAISFFRRMGMEVSDNIRP----NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEA 304 (529)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (529)
++|++.|++.... .| +...+..+..++...|++++|...|+++.+..+. +..++..+..++...|++++|
T Consensus 238 ~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 238 QQALSAYAQAEKV-----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877643 33 5667777777777778888888888777776543 445666677777777777777
Q ss_pred HHHHhhc
Q 009663 305 RRAFDRN 311 (529)
Q Consensus 305 ~~~~~~~ 311 (529)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 7766554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-12 Score=116.16 Aligned_cols=243 Identities=12% Similarity=0.047 Sum_probs=148.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc----CC
Q 009663 181 VVSWTAMISGYTRVGDIKNAASLFDSMPD--------R---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS----DN 245 (529)
Q Consensus 181 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~ 245 (529)
..++..+...+...|++++|...|+++.+ . ...++..+...|...|++++|...+++...... ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46788899999999999999999998754 2 245688899999999999999999999975310 11
Q ss_pred CCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhC------CCC-CccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhH
Q 009663 246 IRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNG------LDL-DSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTS 318 (529)
Q Consensus 246 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 318 (529)
.+.....+..+...+...|++++|...++++.+.. ..| ...++..+...+...|++++|...|+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------- 177 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ--------- 177 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 23345567788888999999999999998887641 111 22344555555555566555555554
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc------CCCC
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY------RIEP 388 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p 388 (529)
++.+.... +..| ...++..+...+...|++++|...++++.+.. ...+
T Consensus 178 ----------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 178 ----------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ----------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 33321000 1112 12345555555666666666666666555310 0111
Q ss_pred C-------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 389 Q-------IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 389 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
. ...+..+...+...+.+.++...++.. ...| +..++..+..+|...|++++|.+.+++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 112222333344455566666666666 2334 4667888999999999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-11 Score=103.50 Aligned_cols=186 Identities=10% Similarity=-0.117 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK----KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISL 360 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l 360 (529)
..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+ ..| +...+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l 82 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-----KNYNLANAYIGK 82 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-----hCcchHHHHHHH
Confidence 4444455555555555555555554321 3333444455555555555555555555543 222 23344445
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-Ch-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHH
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QI-------EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD---EVVWGSL 428 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 428 (529)
..++...|++++|...+++..+. .| +. ..|..+...+...|++++|.+.|++. ...|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 55555555555555555555432 22 22 23444444445555555555555444 33343 2333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
..++... +...++++..+.+.+...+... .....|.+++|+..+++..+..
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 3333222 2233344444443332222222 1223344589999998887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=102.34 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=160.4
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHH
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMI 323 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 323 (529)
..|+..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|+..|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3456788888889999999999999999999988656777777799999999999999999998653 3455899999
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCC-H-------HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC---hhH
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPD-G-------VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ---IEH 392 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~ 392 (529)
.+|...|++++|+..+++..+ ..|+ . ..|..+...+...|++++|...|+++. .+.|+ ...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK-----AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDA 155 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHH
Confidence 999999999999999999975 2343 3 457777788889999999999999998 44665 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+..+..+|...|+. +++++ .+ ..+...+.... ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus 156 ~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 156 LYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 78888888766643 23333 11 23444444433 33466799999999999999999988888776653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-10 Score=96.69 Aligned_cols=168 Identities=13% Similarity=0.024 Sum_probs=141.1
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLN 362 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~ 362 (529)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+ . .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---D-APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---c-CCCCHHHHHHHHH
Confidence 45666788888999999999999987653 456888899999999999999999999875 3 2335677888888
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998652 346788889999999999999999999987 33 3467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhH
Q 009663 441 AEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~ 459 (529)
|...++++.+..|+++...
T Consensus 163 A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 163 ALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHcCCCchhhH
Confidence 9999999999888765443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.3e-10 Score=105.01 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=148.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC--CHHHHHHHHHHhhccCCchHHHHHHHHHHHhC----CC--C-C
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP--NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNG----LD--L-D 284 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~ 284 (529)
+++.+...+...|++++|...+++........-.+ ...++..+...+...|++++|...++...+.. .. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 34455556666677777777666654320000011 11224445556667777777777777665431 11 1 2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCC----C----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSK----K----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVT 356 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~ 356 (529)
..++..+...+...|++++|...+++... . ...++..+...+...|++++|...+++........-.| ...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~ 213 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDW 213 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhH
Confidence 23455567777888888888887765321 1 12367777888888999999999998876521111111 111
Q ss_pred HH----HHHHHHhCCCcHHHHHHHHHHhHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH
Q 009663 357 FI----SLLNACTHGGLVEQGRAYFKLMTKTYRIEP---QIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPDE 422 (529)
Q Consensus 357 ~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~ 422 (529)
.. ..+..+...|++++|...++..... ...+ ....+..+...+...|++++|...+++. +..++.
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 11 2334467889999999999888642 1111 1235667788899999999999998876 111122
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 423 -VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 423 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
..+..+..++...|+.++|...++++....+
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 3566667788899999999999999988654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=110.48 Aligned_cols=228 Identities=7% Similarity=-0.062 Sum_probs=169.4
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhCCC-C----CccHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC-----hhHHH
Q 009663 256 ALSAIGHTGMLQLGKVIHGYVYRNGLD-L----DSFISNALIDMYGKCGSLKEARRAFDRNSK-----KR-----LTSWN 320 (529)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 320 (529)
....+...|++++|...++++.+.... + ...++..+..+|...|+++.|...+++..+ .+ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 334567889999999999998864221 1 244678889999999999999988876431 11 23788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcccC-CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC--CCC-ChhHHHH
Q 009663 321 SMINSFALHGQSENSICVFEEMMRCQDH-NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYR--IEP-QIEHYGC 395 (529)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p-~~~~~~~ 395 (529)
.+..+|...|++++|++.|++..+..+. +..+ ...++..+..++...|++++|...+++..+... ..| ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988763111 1111 234677788899999999999999999875110 123 3677888
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM----KI--EPD-EVVWGSLLNGCKIYGR---TDFAEFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
+...|.+.|++++|...+++. .. .|. ...+..+...+...++ +.+|+..+++.. ..|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 999999999999999999887 11 222 3445555566777788 777887777632 224455677889999
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 009663 466 YGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 466 ~~~~g~~~~a~~~~~~~~~ 484 (529)
|...|++++|...+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-10 Score=104.57 Aligned_cols=205 Identities=13% Similarity=0.025 Sum_probs=136.0
Q ss_pred CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----C----hhHHHHHHHHHHHcCChhHH
Q 009663 265 MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-----R----LTSWNSMINSFALHGQSENS 335 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a 335 (529)
++++|...+..+ ...|...|++++|...|.+...- + ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 34566777777777777654321 1 23777888888888888888
Q ss_pred HHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHH
Q 009663 336 ICVFEEMMRCQDHNIRPD--GVTFISLLNACTHG-GLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 336 ~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 408 (529)
+..+++..++....-.+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888765321111111 34677788888885 9999999999888753110111 3567888889999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCH
Q 009663 409 ALEVVKGM-KIEPD---E-----VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY-----GIMLANIYG--ELGKW 472 (529)
Q Consensus 409 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 472 (529)
|+..|++. ...|+ . ..+..+..++...|++++|+..++++++++|+.... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 32332 1 256777788888999999999999999988865442 344555554 45778
Q ss_pred HHHHHHHHHHhh
Q 009663 473 DEVRKVRKMLKD 484 (529)
Q Consensus 473 ~~a~~~~~~~~~ 484 (529)
++|+..++++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888865543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-10 Score=104.22 Aligned_cols=225 Identities=12% Similarity=0.130 Sum_probs=150.6
Q ss_pred hccCCchHHHHHHHHHHHh-------CCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC--------C---ChhHHHHH
Q 009663 261 GHTGMLQLGKVIHGYVYRN-------GLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK--------K---RLTSWNSM 322 (529)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l 322 (529)
...|+++.|..++++..+. ..+....++..+...|...|++++|+..|++..+ . ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 2222455778889999999999999999876542 1 23478888
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhc-----CCCC-ChhH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTY-----RIEP-QIEH 392 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~ 392 (529)
...|...|++++|+..++++...... ...| ....+..+...+...|++++|...++++.+.. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998762111 1123 34667788889999999999999999887531 1123 3567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHHcC------CHHHHHHHHHHHHhcCCCC
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-K---------IEPD-EVVWGSLLNGCKIYG------RTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 455 (529)
+..+...|...|++++|...+++. . ..+. ...|..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999998876 1 1222 223333333333322 2333333444333344556
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 456 GGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 456 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..++..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778899999999999999999999988653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-09 Score=95.26 Aligned_cols=242 Identities=10% Similarity=0.042 Sum_probs=125.7
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCh-hhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchH
Q 009663 190 GYTRVGDIKNAASLFDSMPDRDV-PAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQL 268 (529)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 268 (529)
-..-.|++..++.-..++...+. .....+.++|...|+++.. . .-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~---~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------D---PTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------C---SSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------C---CCCHHHHHHHHHHHHh-ccc----
Confidence 33446777777765555543322 2333345677777766531 0 1233333333333322 211
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHHh
Q 009663 269 GKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-----RLTSWNSMINSFALHGQSENSICVFEEMM 343 (529)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 343 (529)
+...+++..+.+ .++..+...+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 233344445666666667777777776665322 23355566666667777777777776664
Q ss_pred hcccCCCCC-----CHHHHHHHHHHH--h--CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 009663 344 RCQDHNIRP-----DGVTFISLLNAC--T--HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVK 414 (529)
Q Consensus 344 ~~~~~~~~p-----~~~~~~~l~~~~--~--~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 414 (529)
+ ..| +..+...++.++ . ..+++..|..+|+++.+. .|+...-..++.++.+.|++++|.+.++
T Consensus 164 ~-----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 N-----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp H-----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred h-----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 344 244444444442 2 223666666777666533 3432222333336666667776666665
Q ss_pred hC-CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 415 GM-KI----------EP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 415 ~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
.+ .. .| ++.++..++......|+ +|.++++++.+..|+++.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 44 21 13 44455444444444555 56666666666666655443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-09 Score=96.83 Aligned_cols=182 Identities=7% Similarity=-0.050 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---C---hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC-CCC-HHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSKK---R---LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI-RPD-GVT 356 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~p~-~~~ 356 (529)
...+..+...+.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|+..|++..+ ... .|. ...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ---IYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---HCCCCchhHHH
Confidence 334445555666666666666666655432 2 33555566666666666666666666654 211 111 233
Q ss_pred HHHHHHHHhC--------CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 009663 357 FISLLNACTH--------GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGS 427 (529)
Q Consensus 357 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 427 (529)
+..+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4445555555 66666666666666543 232 22221111111000000 111356
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLANIYGEL----------GKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 487 (529)
+...+...|++++|+..|+++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7788999999999999999999999974 45788899999876 899999999999987643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-11 Score=95.81 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=107.8
Q ss_pred HHHHHcCChhHHHHHHHHHhhcccCCCCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 009663 324 NSFALHGQSENSICVFEEMMRCQDHNIRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLG 401 (529)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 401 (529)
..+...|++++|+..++... ...|+ ...+..+...|...|++++|...|+++.+. .| +...|..+..+|.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~-----~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST-----PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYE 76 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS-----CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhc-----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 34455677788888888774 23343 234556777888888999999988888854 55 5778888888899
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 402 RAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFA-VKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
+.|++++|...|++. .+.| +...+..+...+.+.|++++|.+. ++++++++|+++.++......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999988887 5556 577888888889999998776655 589999999999999888888887775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-09 Score=94.42 Aligned_cols=241 Identities=11% Similarity=0.009 Sum_probs=157.1
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhC
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKC 298 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (529)
++-..-.|++..++.-...+. ...++ .....+.+++...|++... ....|....+..+.. |...
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~-----~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~ 83 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS-----KVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDT 83 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS-----CCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTT
T ss_pred HHHHHHhhHHHHHHHHHHhcC-----ccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhcc
Confidence 344556788888887444332 12222 3334455667666666532 112233223343333 3332
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC-CCHHHHHHHHHHHhCCCcHHHHH
Q 009663 299 GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR-PDGVTFISLLNACTHGGLVEQGR 374 (529)
Q Consensus 299 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~ 374 (529)
+ |+..|++... ++..++..+..++...|++++|++++.+... .+.. -+...+..++..+.+.|+.+.|.
T Consensus 84 ~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 84 K----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp T----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred c----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 2 6677776543 3444556777888888999999999888754 3332 25567778888888899999999
Q ss_pred HHHHHhHHhcCCCC-----ChhHHHHHHHHH--HhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009663 375 AYFKLMTKTYRIEP-----QIEHYGCLVDLL--GRAG--RFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFA 444 (529)
Q Consensus 375 ~~~~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 444 (529)
+.+++|.+. .| +..+...|+.++ ...| ++.+|..+|+++ ...|+..+...++.++...|++++|.+.
T Consensus 157 k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 157 TIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 999988754 56 345555666553 2334 888999999888 4456633434444578888999999999
Q ss_pred HHHHHhc----------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 445 VKKLIEI----------DPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 445 ~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++.+.+. +|+++.+...++.+....|+ +|.+++.++.+...
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 8877765 47788888777777777786 78888888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-10 Score=114.70 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=117.4
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHH
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISL 360 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l 360 (529)
..+++.|..+|.+.|++++|++.|++.. ..+..+|..+..+|.+.|++++|+..|++..+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-----l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-----ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHH
Confidence 3456666666666666666666666543 23445677777777777777888888877765 234 35677778
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 437 (529)
..++...|++++|++.|+++.+. .| +...|..+..+|.+.|++++|++.|++. .+.| +...+..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88888888888888888887743 55 4677888888888888888888888877 5556 46778888888888888
Q ss_pred HHHHHHHHHHHHhcCC
Q 009663 438 TDFAEFAVKKLIEIDP 453 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p 453 (529)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 8888888888877543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-09 Score=84.63 Aligned_cols=128 Identities=21% Similarity=0.241 Sum_probs=91.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKI 434 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 434 (529)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++ .. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455556666677777777777666431 224556666677777777777777777766 22 3356667777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 435 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.|++++|...++++.+..|+++..+..++.++.+.|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888778888888888888888888888888776543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-09 Score=90.30 Aligned_cols=185 Identities=10% Similarity=0.015 Sum_probs=116.0
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-HHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK--KR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-VTFI 358 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~ 358 (529)
..+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. ..-.+.. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444566667777888888888777653 21 135666777777788888888888777651 1111111 1233
Q ss_pred HHHHHHhC------------------CCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 009663 359 SLLNACTH------------------GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGMKIE 419 (529)
Q Consensus 359 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 419 (529)
.+..++.. .|++++|...|+++.+. .|+ ...+..+..... .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH---------
Confidence 33333332 45666666666666633 342 222211111000 00000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG---GYGIMLANIYGELGKWDEVRKVRKMLKDRNAYKT 490 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 490 (529)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|...++.+...+....
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01113456678899999999999999999999876 5788999999999999999999999988876543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-09 Score=95.48 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=144.1
Q ss_pred CCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-C---hhH
Q 009663 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLD--SFISNALIDMYGKCGSLKEARRAFDRNSK--K-R---LTS 318 (529)
Q Consensus 247 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 318 (529)
+.+...+..+...+...|++++|...|+.+.+..+... ..++..+..+|.+.|++++|+..|++..+ | + ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566777788889999999999999999998764321 55778899999999999999999998653 2 1 236
Q ss_pred HHHHHHHHHH--------cCChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC
Q 009663 319 WNSMINSFAL--------HGQSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ 389 (529)
Q Consensus 319 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 389 (529)
+..+..++.. .|++++|+..|+++.+ . .|+. .....+ ..+..+... -
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~--~p~~~~~~~a~--------------~~~~~~~~~-----~ 147 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---R--YPNHELVDDAT--------------QKIRELRAK-----L 147 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---H--CTTCTTHHHHH--------------HHHHHHHHH-----H
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---H--CcCchhHHHHH--------------HHHHHHHHH-----H
Confidence 7788888988 9999999999999976 2 2432 111111 111111110 0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCC
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIY----------GRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~ 454 (529)
...+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|+..++++++..|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 123556777888889999999888887 33343 45677777777765 8999999999999999998
Q ss_pred Cchh---HHHHHHHHHhcCCHHH
Q 009663 455 NGGY---GIMLANIYGELGKWDE 474 (529)
Q Consensus 455 ~~~~---~~~l~~~~~~~g~~~~ 474 (529)
++.+ ...+..++.+.|++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhh
Confidence 7643 3444445544444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-09 Score=98.60 Aligned_cols=204 Identities=8% Similarity=-0.071 Sum_probs=133.1
Q ss_pred HhhccCCchHHHHHHHHHHHh----CCCCC-ccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----C----hhHHHHHHH
Q 009663 259 AIGHTGMLQLGKVIHGYVYRN----GLDLD-SFISNALIDMYGKCGSLKEARRAFDRNSKK-----R----LTSWNSMIN 324 (529)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~ 324 (529)
.+...|++++|...|.+..+. |.++. ..+|+.+..+|...|++++|+..|++..+- + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566667666666665543 21111 346666777777777777777777654321 1 236778888
Q ss_pred HHHHc-CChhHHHHHHHHHhhcccCCCCC-C-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHH
Q 009663 325 SFALH-GQSENSICVFEEMMRCQDHNIRP-D-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-----EHYGCL 396 (529)
Q Consensus 325 ~~~~~-~~~~~a~~~~~~m~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l 396 (529)
.|... |++++|+..|++..++.+..-.+ . ..++..+...+...|++++|...|+++.+...-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 99999999999887521111111 1 3467788888999999999999999988542111111 156778
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM-KIEPDEV------VWGSLLNGCK--IYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
..++...|++++|...|++. .+.|+.. .+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 88899999999999999987 5555422 2344555554 45678999999988888877554444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-10 Score=90.96 Aligned_cols=123 Identities=15% Similarity=0.004 Sum_probs=103.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG 436 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 436 (529)
|...+...|++++|+..++... ...| +...+..+...|.+.|++++|.+.|++. .+.| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667789999999998876 3355 3556778899999999999999999998 5566 6889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHHhhC
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKV-RKMLKDR 485 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 485 (529)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5777654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-09 Score=97.06 Aligned_cols=229 Identities=12% Similarity=0.016 Sum_probs=151.7
Q ss_pred HhCCChhHHHHHHHHhhhccc----CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHh------CC-CCCccHHHHH
Q 009663 223 TQNGLFSDAISFFRRMGMEVS----DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN------GL-DLDSFISNAL 291 (529)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~~~~----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 291 (529)
...|++++|+..|++...... ...+....++..+..++...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666655543100 011223456777777888888888888888887765 22 2235578889
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC---CCCC-CHHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKK-----------RLTSWNSMINSFALHGQSENSICVFEEMMRCQDH---NIRP-DGVT 356 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~p-~~~~ 356 (529)
..+|...|++++|...|++.... ...++..+...|...|++++|+..++++.+.... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999875421 2347888999999999999999999999862111 1133 3456
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhc------CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-C
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTY------RIEP-QIEHYGCLVDLLGRAG------RFEEALEVVKGMK-IEP-D 421 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~ 421 (529)
+..+...+...|++++|...++++.+.. ...+ ....+..+...+...+ .+.++...++..+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888899999999999999999987531 1122 2334444444444333 2445555555553 223 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 422 EVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 422 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
..++..+...+...|++++|...++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888899999999999999999998875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-10 Score=113.75 Aligned_cols=167 Identities=8% Similarity=-0.089 Sum_probs=111.5
Q ss_pred HhCCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHH
Q 009663 296 GKCGSLKEARRAFDRNS-----------KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNA 363 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~ 363 (529)
...|++++|++.|++.. ..+...+..+..++...|++++|+..|+++.+ ..| +...+..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-----RVGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCcchHHHHHHHHHH
Confidence 55677777777776654 22344666777777777777777777777754 223 44566666667
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 440 (529)
+...|++++|...|+++.+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++
T Consensus 477 ~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777643 44 46667777777777777777 7777766 3344 46667777777777777777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
|++.|+++.+++|++..++..++.++...|+
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777777655443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=87.95 Aligned_cols=103 Identities=11% Similarity=-0.060 Sum_probs=92.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 385 RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 385 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5566 4667888889999999999999999998 4455 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
++.+|.+.|++++|+..|++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-09 Score=94.93 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=138.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009663 301 LKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKL 379 (529)
Q Consensus 301 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 379 (529)
.+.....+......+...+..+...+...|++++|+..|++... ..| +...+..+...+...|++++|...+++
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ-----LSNQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34445555555555556777788888899999999999999865 334 556778888899999999999999998
Q ss_pred hHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 009663 380 MTKTYRIEPQIEHYG-CLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN- 455 (529)
Q Consensus 380 ~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~- 455 (529)
+... .|+..... .....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++
T Consensus 177 ~~~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 177 IPLQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SCGG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred Cchh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 8744 56544332 2333466778888888888877 4445 68889999999999999999999999999999987
Q ss_pred -chhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 456 -GGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 456 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
..++..++.++...|+.++|...+++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8899999999999999999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=93.74 Aligned_cols=222 Identities=11% Similarity=0.025 Sum_probs=152.2
Q ss_pred CCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc-cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH
Q 009663 225 NGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH-TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE 303 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 303 (529)
.|++++|.+++++..+... .. +.. .++++.|...|..+ ...|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~----~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK----TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHcc----cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHH
Confidence 4677888888887764311 11 112 46677777766654 456777788888
Q ss_pred HHHHHhhcCCC-----C----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCCCcHHH
Q 009663 304 ARRAFDRNSKK-----R----LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 304 A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~ 372 (529)
|...|.+...- + ..+|+.+...|...|++++|+..|++..++....-.|. ..++..+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 88777654321 1 23788888899999999999999998766321211222 3567778888888 99999
Q ss_pred HHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHH
Q 009663 373 GRAYFKLMTKTYRIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI---EPD----EVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~ 440 (529)
|+..|++..+...-.. ...++..+...|.+.|++++|+..|++. .+ .++ ...+..++.++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998875321111 1467888999999999999999999887 21 122 2356666677888899999
Q ss_pred HHHHHHHHHhcCCCCchh-----HHHHHHHHHhcCCHHHHHHH
Q 009663 441 AEFAVKKLIEIDPNNGGY-----GIMLANIYGELGKWDEVRKV 478 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 478 (529)
|...|++++ ..|+.... ...++.++ ..|+.+.+..+
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999999 88864432 33445544 56777666553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=80.43 Aligned_cols=131 Identities=19% Similarity=0.290 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.|..+...+...|++++|..+++++.+ .. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE---LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHH
Confidence 466677788888888888888888865 32 2356677777888888889999999998887541 33567788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 398 DLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
..+...|++++|.++++++ .. +.+...+..+...+...|++++|...++++.+.+|+
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999999999999887 32 336778888888899999999999999999988874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-09 Score=105.21 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHH
Q 009663 298 CGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 298 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 373 (529)
.|++++|...|++..+. +...|..+...+...|++++|++.+++..+ ..| +...+..+..++...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-----LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 47889999999987643 456899999999999999999999999974 334 567888899999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 009663 374 RAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY---GRTDFAEFAVKK 447 (529)
Q Consensus 374 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 447 (529)
...+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.+++
T Consensus 77 ~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 77 AVLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9999999865 45 5788999999999999999999999988 4445 578888999999999 999999999999
Q ss_pred HHhcCCCCchhHHHHH
Q 009663 448 LIEIDPNNGGYGIMLA 463 (529)
Q Consensus 448 ~~~~~p~~~~~~~~l~ 463 (529)
+++.+|++...+..++
T Consensus 154 al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 154 AVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHTCCCSCHHHHTT
T ss_pred HHhcCCcccChHHHhC
Confidence 9999998888887775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=89.22 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 409 ALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN--GGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 409 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
|...+++. ...| +...+..+...+...|++++|+..|+++++.+|+. +..+..++.++...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45555554 3345 57778888888888888999999998888888764 55888888888888998888888877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-08 Score=84.72 Aligned_cols=161 Identities=9% Similarity=-0.072 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCC----cHHHHHHHHHHhHHhcCCCCCh
Q 009663 315 RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGG----LVEQGRAYFKLMTKTYRIEPQI 390 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~ 390 (529)
+...+..+...|...+++++|+.+|++..+ .| +...+..+...|.. + ++++|..+|++..+. -++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~ 85 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSK 85 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCH
Confidence 455666677777777888888888888776 43 44566666666766 6 788899988888643 356
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchh
Q 009663 391 EHYGCLVDLLGR----AGRFEEALEVVKGM-KIEPD---EVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 391 ~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
..+..|...|.. .+++++|+++|++. ...|+ +..+..|...|.. .+++++|+..|+++.+. |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 677778878876 78899999999887 44453 7788888888888 78899999999999888 557778
Q ss_pred HHHHHHHHHhc-C-----CHHHHHHHHHHHhhCCC
Q 009663 459 GIMLANIYGEL-G-----KWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 459 ~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 487 (529)
+..|+.+|... | ++++|...+++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88898888764 3 89999999999887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-08 Score=86.35 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLV 397 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 397 (529)
..+..+|.+.|++++|+..|++..+ ..| +...+..+..++...|++++|...|+++.+. .| +...+..+.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg 129 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ-----KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHH
Confidence 3478889999999999999999875 234 5677888889999999999999999999854 56 577888888
Q ss_pred HHHHhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 398 DLLGRAGR--FEEALEVVKGMKIEPDE--VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 398 ~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.+|...|+ .+.+...++... .|++ ..+.....++...|++++|+..|++++++.|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 130 NYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 88876654 445566666653 3443 34455666777889999999999999999995
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.1e-09 Score=95.93 Aligned_cols=200 Identities=9% Similarity=-0.045 Sum_probs=149.9
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 009663 262 HTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEE 341 (529)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (529)
..|++++|.+++++..+.... . .+...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788899999888765321 1 01115788888888765 45778899999999999998
Q ss_pred HhhcccCCCCC--CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC--CC--ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 009663 342 MMRCQDHNIRP--DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRI--EP--QIEHYGCLVDLLGRAGRFEEALEVVKG 415 (529)
Q Consensus 342 m~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 415 (529)
..++....-.+ -..+|..+...|...|++++|...|++..+...- .+ ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 87632111111 1346888888999999999999999987643211 11 14577888899988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 009663 416 M-KIEP---D----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG------GYGIMLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 416 ~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (529)
. .+.| + ..++..+...+...|++++|+..|++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 2111 1 46788889999999999999999999999765432 3666777888889999999999999
Q ss_pred Hh
Q 009663 482 LK 483 (529)
Q Consensus 482 ~~ 483 (529)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 88
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.9e-09 Score=80.90 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444444444444444444443 2222 3444444444444444555555555555444444444444444444444
Q ss_pred CCHHHHHHHHHHHh
Q 009663 470 GKWDEVRKVRKMLK 483 (529)
Q Consensus 470 g~~~~a~~~~~~~~ 483 (529)
|++++|+..|++..
T Consensus 95 ~~~~~A~~~~~~al 108 (126)
T 4gco_A 95 REWSKAQRAYEDAL 108 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555554444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.8e-08 Score=97.85 Aligned_cols=145 Identities=11% Similarity=-0.025 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHH
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFE 340 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 340 (529)
|++++|...++++.+.... +...+..+...|...|++++|.+.|++..+ .+...|..+..+|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555555554443321 334444455555555555555555554332 123345555555555555555555555
Q ss_pred HHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 009663 341 EMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA---GRFEEALEVVKGM 416 (529)
Q Consensus 341 ~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 416 (529)
+..+ . .+.+...+..+..++...|++++|...++++.+. .| +...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~---~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASD---A-APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHH---H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHh---c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5543 1 1112344444555555555555555555555432 22 344445555555555 5555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-08 Score=78.18 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=96.5
Q ss_pred CCCCH-HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 350 IRPDG-VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 350 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
+.|+. ..+......+.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..|++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44543 45667788888999999999999998854 45 6888999999999999999999999987 4455 68889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
..+..++...|++++|++.|+++++++|+++.+...+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999998888765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.2e-09 Score=83.80 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 385 RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 385 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4455 4566777788888888888888888877 3344 67788888888888889999999999988888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++.+|...|++++|...+++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888899999998888887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-08 Score=84.53 Aligned_cols=129 Identities=10% Similarity=-0.089 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 4556677788888888888888765 35677788888888888888888888888887541 23567788888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-D----------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.+|...|++++|.+.|++. ...| + ...+..+..++...|++++|...++++.+..|++
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888888776 2222 2 2677778888888888888888888888888865
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-07 Score=83.50 Aligned_cols=163 Identities=9% Similarity=0.006 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH----HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 009663 320 NSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV----TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IE 391 (529)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 391 (529)
...+..+...|++++|..++++.... ....|+.. .+..+...+...+++++|...++++.+...-.++ ..
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33467788889999999999988651 22233322 2334666677788999999999998863111223 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------c
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-----KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN------G 456 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~ 456 (529)
+++.+...|...|++++|...|+++ ....+ ..++..+...|.+.|++++|+..+++++++.+.. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6889999999999999999998876 11112 3477888999999999999999999999855322 6
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHhh
Q 009663 457 GYGIMLANIYGELGK-WDEVRKVRKMLKD 484 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 484 (529)
.++..++.+|.+.|+ +++|...+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 788999999999995 6999999888753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-07 Score=82.95 Aligned_cols=223 Identities=8% Similarity=-0.038 Sum_probs=126.0
Q ss_pred ChhHHHHHHHHhhhcccCCCCCCHH-HHHHHHHHhhccC--CchHHHHHHHHHHHhCCCCCccHHHHHHHHH----HhC-
Q 009663 227 LFSDAISFFRRMGMEVSDNIRPNQV-TLVCALSAIGHTG--MLQLGKVIHGYVYRNGLDLDSFISNALIDMY----GKC- 298 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 298 (529)
..++|++.+..+. .+.|+.. .++.--.++...+ ++++++.+++.++...+. +..+++.-..++ ...
T Consensus 48 ~s~~aL~~t~~~L-----~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 48 YSERALHITELGI-----NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CSHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH-----HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3457777777776 3355433 4555555566666 777777777777766543 444454443333 333
Q ss_pred --CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChh--HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc--
Q 009663 299 --GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSE--NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL-- 369 (529)
Q Consensus 299 --g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 369 (529)
+++++++.+++++.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+ .. .-|...|+.....+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hC-CCCHHHHHHHHHHHHhccccc
Confidence 566666666665543 34446666666666666666 66666666654 22 2244555555445555554
Q ss_pred ----HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCH
Q 009663 370 ----VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEE-ALEVVKGM-KI----EPDEVVWGSLLNGCKIYGRT 438 (529)
Q Consensus 370 ----~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~ 438 (529)
++++.+.++.+... .| |...|+.+...+.+.|+..+ +..+++++ .. ..+...+..++..+.+.|+.
T Consensus 198 ~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred hhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 56666666666543 33 45566666666666665333 33444444 11 22455566666666666666
Q ss_pred HHHHHHHHHHHh-cCCCCchhHHHH
Q 009663 439 DFAEFAVKKLIE-IDPNNGGYGIML 462 (529)
Q Consensus 439 ~~A~~~~~~~~~-~~p~~~~~~~~l 462 (529)
++|+++++.+.+ .+|....+|...
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHHHHH
Confidence 666666666664 566555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-07 Score=97.74 Aligned_cols=187 Identities=10% Similarity=-0.005 Sum_probs=142.3
Q ss_pred hccCCchHHHHHHHHHH--------HhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 009663 261 GHTGMLQLGKVIHGYVY--------RNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALH 329 (529)
Q Consensus 261 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 329 (529)
...|++++|.+.++++. +.. +.+...+..+..+|...|++++|+..|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77889999999999888 433 23566788888999999999999999987653 4566888999999999
Q ss_pred CChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 009663 330 GQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFE 407 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 407 (529)
|++++|+..|++..+ ..| +...+..+..++...|++++ ...|+++.+. .| +...|..+..+|.+.|+++
T Consensus 481 g~~~~A~~~~~~al~-----l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD-----TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp TCHHHHHHHHHHHHH-----HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHH
Confidence 999999999999875 234 45677888888999999999 9999998854 55 5778899999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCch
Q 009663 408 EALEVVKGM-KIEPD-EVVWGSLLNGCKIYGR-----TDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 408 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~ 457 (529)
+|.+.|++. ...|+ ...+..+..++...++ .+...+..+......++++.
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999999998 67776 5667777777666554 23333444444444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-08 Score=83.47 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=105.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHH----------------HHHhCccCCCchHHHHHHHHHHHhCCCC
Q 009663 84 ITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPH----------------VLKSCPDVLESRGTKMVHTQIVKSGFEQ 147 (529)
Q Consensus 84 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 147 (529)
...+... |++++|+..|++..+.. +.+...|.. +..++...|++++|...++..++.. +.
T Consensus 11 g~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 11 VSAAIEA-GQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3444556 77777777777777654 334445555 6667777788888888887777765 33
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChh--hHHHHHH
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVG--DIKNAASLFDSMPDRDVP--AWNSVIA 220 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~--~~~~li~ 220 (529)
+...+..+..++...| ++++|.+.|++..+ | +..+|..+...|...| +.+.+...+.....++.. .+.....
T Consensus 87 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRG-QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 5677777777777788 78888888777764 3 4556666666665443 345566677776666543 2344455
Q ss_pred HHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHH
Q 009663 221 GCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVC 255 (529)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ 255 (529)
++...|++++|+..|++.. ...|+......
T Consensus 166 ~~~~~~~~~~A~~~~~~al-----~l~P~~~~~~~ 195 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVI-----LRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHT-----TTSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH-----HhCCCHHHHHH
Confidence 6666788888888888887 55777554433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=78.20 Aligned_cols=127 Identities=9% Similarity=0.033 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 431 (529)
..+..+...+...|++++|...|++..+. .| +...+..+..++...|++++|...+++. ...| +...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566677777888999999988888754 34 5778888888899999999999998887 3334 67888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHHHHhh
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANI--YGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 484 (529)
+...|++++|...++++.+..|++...+..+..+ +...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999988888555554 7788999999999887753
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-07 Score=85.85 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC-CCH----HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCC--CCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIR-PDG----VTFISLLNACTHGGLVEQGRAYFKLMTKTYRI--EPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~- 389 (529)
.+...+..+...|++++|.+.+.+..+ .... ++. ..+..+...+...|++++|...+++..+...- .+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELK---KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc---cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 444556777888888888888887765 2221 111 12334555677888999999999887643111 111
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Q 009663 390 -IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPD-----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN----- 454 (529)
Q Consensus 390 -~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----- 454 (529)
..+++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..+++++++.++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 447888899999999999999988876 11222 257888889999999999999999999885432
Q ss_pred -CchhHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 009663 455 -NGGYGIMLANIYGELGKWDEV-RKVRKMLKD 484 (529)
Q Consensus 455 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 484 (529)
-..++..++.+|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156788899999999999999 777777653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.7e-08 Score=81.16 Aligned_cols=156 Identities=13% Similarity=0.020 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNA 363 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~ 363 (529)
.+..+...+...|++++|...|++..+. +...+..+...+...|++++|+..++++.. ..|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL-----EYQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-----GGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-----ccCChHHHHHHHHH
Confidence 3455677888899999999999887743 456888888999999999999999998854 23333322222111
Q ss_pred -HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCC
Q 009663 364 -CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD---EVVWGSLLNGCKIYGR 437 (529)
Q Consensus 364 -~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~ 437 (529)
+...+....|...+++..+. .| +...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11112223467888888754 56 5788899999999999999999999887 55654 5688889999999999
Q ss_pred HHHHHHHHHHHHh
Q 009663 438 TDFAEFAVKKLIE 450 (529)
Q Consensus 438 ~~~A~~~~~~~~~ 450 (529)
.++|...|++++.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.8e-08 Score=87.44 Aligned_cols=134 Identities=10% Similarity=-0.025 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLL 429 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 429 (529)
.+...+..+...+...|++++|...|+++.+. .| +...+..+...+.+.|++++|...++++ ...|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34456677778888999999999999999865 56 5788999999999999999999999998 5567765444433
Q ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 430 N-GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 430 ~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
. .+...++.++|+..++++.+.+|+++..+..++.++...|++++|+..++++.+....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 3677888899999999999999999999999999999999999999999999887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-05 Score=78.51 Aligned_cols=372 Identities=11% Similarity=0.011 Sum_probs=220.6
Q ss_pred cchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCC--CCChhHHHHHHHHHhcCCC-ChHHHHHHHH
Q 009663 26 INHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLT--TPNTYLYTAMITAYASQPA-HASSAFSLYR 102 (529)
Q Consensus 26 ~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~~a~~~~~ 102 (529)
...++.|++.+.+. +-. + +.+.+..+|++.. .|+...|...+.-..+. + ..+....+|+
T Consensus 11 i~~aR~vyer~l~~---------------~P~-~-~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL---------------YMS-K-DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-SQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH---------------HHT-T-CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-C----CTHHHHH
T ss_pred hHHHHHHHHHHHHH---------------CCC-C-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 55566666666544 222 5 9999999999886 48888999988888776 5 4567788888
Q ss_pred HHHHC-CCCCCCcchHHHHHHhCcc----CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009663 103 DMVRR-GQPQPNQFIYPHVLKSCPD----VLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMS 177 (529)
Q Consensus 103 ~m~~~-~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~ 177 (529)
..+.. |.-+++...|...+..+.. .++.+.+..+|+.++......-...|......-.. . ....+.+++.+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~-~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-L-NKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-H-CHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-h-ccccHHHHHHHHh
Confidence 88764 3213466778888776543 46778899999999874222122333333322222 2 2333333332211
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC--C-----hhHHHHHHHHhhhcccCCCCCCH
Q 009663 178 DRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNG--L-----FSDAISFFRRMGMEVSDNIRPNQ 250 (529)
Q Consensus 178 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~~~~p~~ 250 (529)
| .|..- ...++++...+.. .+...|...+..-...+ - .+.+..+|+++... .+.+.
T Consensus 151 -~---~y~~a------r~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~ 213 (493)
T 2uy1_A 151 -P---IFQSS------FQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAE 213 (493)
T ss_dssp -H---HHHHH------HHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCH
T ss_pred -H---HHHHH------HHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCH
Confidence 0 00000 0002222222222 23345555444432221 1 34567788887753 34456
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHH-HHHHHhhcC--C-------C---Chh
Q 009663 251 VTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKE-ARRAFDRNS--K-------K---RLT 317 (529)
Q Consensus 251 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~--~-------~---~~~ 317 (529)
..|...+.-+...|+++.|..+++.+... +.+...+. .|+...+.++ ...+.+... . + ...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 67777777778889999999999999988 23333222 2222111111 112222110 0 0 113
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHH--HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFIS--LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
.|...+....+.++.+.|..+|.++.. .+ ++...|.. .+.... .++.+.|..+|+...+.++ -++..+..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~---~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~--~~~~~~~~ 359 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGN---EG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP--DSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTT---SC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhC---CC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC--CCHHHHHH
Confidence 566777777778889999999998822 22 23444432 222222 2368999999999887632 23555666
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 396 LVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++..
T Consensus 360 yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788899999999999983 2577788888877788999988888888875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-08 Score=78.50 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=80.8
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 385 RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 385 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3345 3455666777788888888888888877 3344 67778888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 462 LANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++.+|...|++++|...+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=82.03 Aligned_cols=184 Identities=14% Similarity=-0.002 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Chh---HHHH
Q 009663 250 QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLD--SFISNALIDMYGKCGSLKEARRAFDRNSK--K-RLT---SWNS 321 (529)
Q Consensus 250 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 321 (529)
...+..+...+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|+..|+++.+ | +.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667788999999999999999998755322 34677789999999999999999998653 2 221 5556
Q ss_pred HHHHHHH------------------cCChhHHHHHHHHHhhcccCCCCCCHH-HHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 322 MINSFAL------------------HGQSENSICVFEEMMRCQDHNIRPDGV-TFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 322 li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
+..++.. .|++++|+..|+++ ....|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-----l~~~P~~~~a~~a~~~----------l~~~~~~~~- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL-----VRGYPNSQYTTDATKR----------LVFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHH-----HTTCTTCTTHHHHHHH----------HHHHHHHHH-
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH-----HHHCcCChhHHHHHHH----------HHHHHHHHH-
Confidence 6666665 56889999999998 44555542 2221111 001111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 009663 383 TYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457 (529)
Q Consensus 383 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 457 (529)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|++.++++....|++..
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12234677889999999999999988 43443 256888889999999999999999999998887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-07 Score=91.85 Aligned_cols=353 Identities=10% Similarity=-0.009 Sum_probs=206.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCC-chHHHHHHHHHHHh-CC-CCchhHHHHHHHHHH----hcCC
Q 009663 92 AHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLE-SRGTKMVHTQIVKS-GF-EQYPVVETALVNSYS----RSGN 164 (529)
Q Consensus 92 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-g~-~~~~~~~~~l~~~~~----~~g~ 164 (529)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+.++.. |. ..+...|...+..+. ..+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~- 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT- 103 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH-
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH-
Confidence 6788899999888874 5688888777776555542 35567777777764 43 235677777776654 235
Q ss_pred CHHHHHHHHhhCCC-CChhhHHHHHHHHH---hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhh
Q 009663 165 DIGIARKLFDEMSD-RNVVSWTAMISGYT---RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGM 240 (529)
Q Consensus 165 ~~~~A~~~~~~~~~-~~~~~~~~ll~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 240 (529)
+.+.+.++|++... |.. .+..+-..|. +..+...+.+++ .... +.+..|...++.+..
T Consensus 104 ~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~---------------~~~~--~~y~~ar~~y~~~~~ 165 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIV---------------GDTL--PIFQSSFQRYQQIQP 165 (493)
T ss_dssp HHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHH---------------HHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHH---------------HHHh--HHHHHHHHHHHHHHH
Confidence 67788888887765 311 1122211111 111122222222 1111 233444444444432
Q ss_pred cccCCCCCCHHHHHHHHHHhhcc--CC-----chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 009663 241 EVSDNIRPNQVTLVCALSAIGHT--GM-----LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSK 313 (529)
Q Consensus 241 ~~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 313 (529)
... + .+...|...+.--... +- .+.+..+|++++...+ .+...|...+..+.+.|+.+.|..+|++...
T Consensus 166 ~~~-~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 166 LIR-G--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHH-T--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh-h--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 100 1 1223444433332211 11 3456788999888654 4577788888888999999999999986432
Q ss_pred -C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhccc-C-----CCCC---CHHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 314 -K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQD-H-----NIRP---DGVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 314 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~-----~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
| +...|. .|+...+.++. ++.+.+... . +..+ ....|...+....+.++.+.|..+|+++ +
T Consensus 242 ~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~ 313 (493)
T 2uy1_A 242 MSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G 313 (493)
T ss_dssp HCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T
T ss_pred CCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h
Confidence 2 222222 23332222222 222221000 0 0011 1244666666666678899999999998 3
Q ss_pred hcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 383 TYRIEPQIEHYGCLVDLLGRA-GRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 383 ~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
.. ..+...|...+..-... ++.+.|..+|+.. ..+-++..|...++.....|+.+.|..+|+++ +.....+
T Consensus 314 ~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw 387 (493)
T 2uy1_A 314 NE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMW 387 (493)
T ss_dssp TS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHH
T ss_pred CC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHH
Confidence 31 23445554333333333 3699999999987 22224556777788788899999999999998 3466778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 460 IMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
...+..-...|+.+.+..++++..+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8887777788999999998888864
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-07 Score=79.13 Aligned_cols=173 Identities=9% Similarity=-0.091 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcC----ChhHHHHHHHHH
Q 009663 268 LGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK-RLTSWNSMINSFALHG----QSENSICVFEEM 342 (529)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m 342 (529)
+|...|++..+.| +...+..+...|...+++++|+..|++..+. +...+..+...|.. + ++++|+.+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666654 4566667777777788888888888776544 44566677777766 6 788888888888
Q ss_pred hhcccCCCCCCHHHHHHHHHHHhC----CCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCChHHHHH
Q 009663 343 MRCQDHNIRPDGVTFISLLNACTH----GGLVEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGR----AGRFEEALE 411 (529)
Q Consensus 343 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~ 411 (529)
.+ .+ +...+..+...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|..
T Consensus 80 ~~---~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 80 VE---AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HH---TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HH---CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 76 43 45566677777776 78899999999988743 443 6788888888888 788999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 009663 412 VVKGM-KIEPDEVVWGSLLNGCKIY-G-----RTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 412 ~~~~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 453 (529)
+|++. ....+...+..+...|... | ++++|..+|+++.+.+.
T Consensus 151 ~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99887 3335666777777777653 3 89999999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.8e-08 Score=80.78 Aligned_cols=120 Identities=10% Similarity=0.067 Sum_probs=73.6
Q ss_pred CCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--HH
Q 009663 366 HGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG-CKIYGRT--DF 440 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~ 440 (529)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665431 224556666666666677777776666665 2223 45556666666 5566666 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|+..++++++.+|+++.++..++.+|...|++++|...++++.+...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 77777777777777777777777777777777777777777665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.7e-06 Score=73.73 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=167.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC--CHHHHHHHHhhcCCC---ChhHHHHHHHHH----HHc---CC
Q 009663 264 GMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG--SLKEARRAFDRNSKK---RLTSWNSMINSF----ALH---GQ 331 (529)
Q Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~li~~~----~~~---~~ 331 (529)
...++|+.+++.++..++. +..+++.-..++...| ++++++++++.+... +..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3446899999999988754 5567787888888888 999999999987643 444666555444 555 78
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH--HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC---
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE--QGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGR--- 405 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--- 405 (529)
+++++.+++++.+ .-+-+...|+.-.-.+.+.|.++ ++...++++.+. .| |...|+.-...+.+.|+
T Consensus 126 ~~~EL~~~~~~l~----~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 126 PYREFDILEAMLS----SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp THHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccch
Confidence 9999999999975 23346677777766777778877 999999999965 44 67788877777777776
Q ss_pred ---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCHHHHH
Q 009663 406 ---FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRT-DFAEFAVKKLIEID---PNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 406 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|+
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999887 4455 788898888888888874 44667888877766 778899999999999999999999
Q ss_pred HHHHHHhh
Q 009663 477 KVRKMLKD 484 (529)
Q Consensus 477 ~~~~~~~~ 484 (529)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=74.24 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLL 429 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 429 (529)
+...+..+...+...|++++|...|+++.+ ..| +...+..+...|...|++++|...+++. ...| +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 455677777788888888888888888874 344 5777888888888888888888888877 3334 577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
.++...|++++|++.++++.+..|++...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 889999999999999999999999888888888888877664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-07 Score=71.67 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNG 431 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 431 (529)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..+++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4566777777888888888888888887541 235677788888888888888888888877 32 3467788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG 470 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 470 (529)
+...|++++|...++++.+..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888888776554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=83.28 Aligned_cols=125 Identities=11% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDE----VVWGSLLNGCKIY 435 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 435 (529)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 444555666677776666666522 343224444555666667777777776655322322 2455556666667
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 436 GRTDFAEFAVKKLIEID--PN-NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++.....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777777665422 32 334556666666677777777777766665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9e-08 Score=89.15 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 4445 68889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHH-HHHHHHHh
Q 009663 468 ELGKWDEV-RKVRKMLK 483 (529)
Q Consensus 468 ~~g~~~~a-~~~~~~~~ 483 (529)
+.|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44566664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=72.79 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLN 430 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 430 (529)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34556677777888888888888888887541 235777888888888999999999888887 3334 5778888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 431 GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 431 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+...|++++|...++++.+..|+++..+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.3e-07 Score=77.75 Aligned_cols=130 Identities=8% Similarity=-0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (529)
+..+...+...|++++|...|++...++...|..+..+|...|++++|+..|++..+ .. +.+...+..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC-ccchHHHHHHHHHHHHc
Confidence 344556666677777777777766666666667777777777777777777776654 21 22445566666667777
Q ss_pred CcHHHHHHHHHHhHHhcC-------------CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 009663 368 GLVEQGRAYFKLMTKTYR-------------IEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD 421 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 421 (529)
|++++|...|+++.+... ..| ....+..+..+|.+.|++++|.+.|++. ...|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 777777777776664211 011 1256666666777777777777777665 44554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=7.2e-08 Score=87.33 Aligned_cols=189 Identities=8% Similarity=-0.018 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLL 361 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~ 361 (529)
..+..+...+...|++++|+..|++.. ..+...|..+..+|.+.|++++|+..+++..+ ..| +...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Confidence 445556666777777777777776543 23455677777777778888888888887753 334 455677777
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
.++...|++++|...|+++.+. .|+ ...+...+....+..+...... ........+......+... ..|++++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 7788888888888888777643 221 1111111111111111111111 1222333444444444332 3689999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHhhC
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGEL-GKWDEVRKVRKMLKDR 485 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 485 (529)
|++.++++.+.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998888888887777766 7799999999988764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=6.7e-08 Score=74.92 Aligned_cols=96 Identities=15% Similarity=0.016 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 4455 6888888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhCCC
Q 009663 470 GKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 470 g~~~~a~~~~~~~~~~~~ 487 (529)
|++++|+..+++..+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-07 Score=72.99 Aligned_cols=96 Identities=16% Similarity=0.022 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44555666677777777777777766 3333 566777777777777888888888888887777777777777777878
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 009663 469 LGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 469 ~g~~~~a~~~~~~~~~~~ 486 (529)
.|++++|+..+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 888888887777776543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=71.16 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN--NGGYGIMLAN 464 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 464 (529)
+...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|+..++++.+..|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556677777888888888888888876 333 36778888888899999999999999999999998 8999999999
Q ss_pred HHHhc-CCHHHHHHHHHHHhhCCCc
Q 009663 465 IYGEL-GKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 465 ~~~~~-g~~~~a~~~~~~~~~~~~~ 488 (529)
++.+. |++++|.+.++++.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999998877653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=80.18 Aligned_cols=165 Identities=15% Similarity=0.003 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCh------hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSK---KRL------TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GV 355 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~ 355 (529)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778889999999888865332 111 1344466677788899999999998875211212222 44
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-CH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KI------EP-DE 422 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 422 (529)
+++.+...|...|++++|...++++.+.....|+ ..++..+...|.+.|++++|...+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732111222 258888999999999999999999876 11 11 16
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 009663 423 VVWGSLLNGCKIYGRTDFA-EFAVKKLIEI 451 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 451 (529)
.++..+...+...|++++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788899999999999999 7889888763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-07 Score=75.18 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=84.4
Q ss_pred CCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 350 IRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 350 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
+.|+ ...+..+...+...|++++|...|+++.+. .| ++..|..+..+|...|++++|+..|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 4453 345667777888889999999999988854 55 5788888889999999999999999887 4455 57788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.6e-07 Score=79.15 Aligned_cols=137 Identities=10% Similarity=-0.091 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 009663 319 WNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ--IEHYGCL 396 (529)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 396 (529)
+......+...|++++|.++|..+.. ..|+......+...+.+.+++++|+..|+...+. . .|. ...+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~L 177 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHH
Confidence 44566777888899999988888743 3454445455555778889999999999866421 1 111 3467778
Q ss_pred HHHHHhcCChHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGM--K-IEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
..++.+.|++++|++.|++. + ..|. ...+.....++.+.|+.++|...|+++...+|+ +.+...|.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88899999999999999988 2 2153 346677788899999999999999999999997 66665553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=76.19 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=91.1
Q ss_pred CCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 009663 349 NIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVV 424 (529)
Q Consensus 349 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 424 (529)
...| +...+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|...|++. .+.| +...
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 3445 3445667778888999999999999998854 45 6788889999999999999999999987 4445 5788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
+..+..++...|++++|+..|++++++.|+++.....
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 8889999999999999999999999999987766443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=76.58 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLL 429 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 429 (529)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..|++. .+.| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567788888899999999999999999864 45 6888999999999999999999999988 4455 588899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.++...|++++|+..|+++++++|++...+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999998886655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-07 Score=71.29 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|+++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566666777777777777777777665 3233 4667777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 009663 467 GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~~~ 486 (529)
...|++++|+..+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 77788888877777776543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=73.16 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-------hhHHHH
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG-------GYGIML 462 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l 462 (529)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.++++++++|++. .++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4445556666666666666666655 3334 455666666666666777777777776666655443 245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 009663 463 ANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666777777766666544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.9e-07 Score=68.08 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGC 432 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 432 (529)
.+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3344444444455555555555554432 22 3444444444444444444444444443 1122 344444444444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 433 KIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 433 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
...|++++|...++++.+.+|+++..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 444444444444444444444444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=6e-07 Score=70.56 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...+..+...+.+.|++++|...|++. ...| +...+..+...+...|++++|+..++++.+..|+++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4678888999999999999999999987 5555 6888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 009663 467 GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+.|++++|...+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999987654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-07 Score=73.01 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=90.5
Q ss_pred CCCC-HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 009663 350 IRPD-GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVW 425 (529)
Q Consensus 350 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 425 (529)
..|+ ...+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|++. ...| +...+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 3443 344556677788899999999999998854 45 6788888999999999999999999987 4444 57788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
..+..++...|++++|+..|++++++.|+++........
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 889999999999999999999999999988776655433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.3e-07 Score=75.77 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----c
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-KI---EP-D----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID--PNN----G 456 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~----~ 456 (529)
.+..+...|...|++++|.+.+++. .. .+ + ...+..+...+...|++++|...++++.+.. ..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4444445555555555555554443 00 11 1 2334455555666666666666666665422 111 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 457 GYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.++..++.++...|++++|...+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 223555666666666666666665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-07 Score=69.83 Aligned_cols=110 Identities=10% Similarity=-0.056 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNG 431 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 431 (529)
..+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45666777788889999999999888854 44 5788888899999999999999999887 4445 57888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 009663 432 CKIYGRTDFAEFAVKKLIEID------PNNGGYGIMLANIYG 467 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 467 (529)
+...|++++|+..++++++++ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999998 877777777766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-06 Score=69.34 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWG 426 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 426 (529)
+...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45667777778888888888888888887 33565 567777888888888888888888776 3344 567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
.+..++...|++++|...++++.+.+|+++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888888888888888888888888888777777666543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=66.06 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888888999999999999887 3334 67788888888899999999999999999999988889999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCC
Q 009663 468 ELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~~~ 487 (529)
..|++++|...+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999998877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-06 Score=78.81 Aligned_cols=206 Identities=7% Similarity=0.005 Sum_probs=120.2
Q ss_pred CCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhH---HHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCc---
Q 009663 41 QSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYL---YTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQ--- 114 (529)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--- 114 (529)
..|+..+...+...+.... +. ++..-...+... +...+..+... |++++|...+++..+.....|+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~~---~~---~~~~~~~~~~~~~~~l~~~i~~~~~~-~~y~~a~~~~~~~l~~~~~~~~~~~~ 114 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI---IH---FYEVLIYSDIERKKQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQF 114 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT---HH---HHHTTTSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH---HH---HhCCCCCCcchhHHHHHHHHHHHHHH-hhHHHHHHHHHHHhccccCChHHHHH
Confidence 4677777777777776532 22 333333333333 33346677788 99999999999998753212221
Q ss_pred -chHHHHHHhCccCCCchHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHH
Q 009663 115 -FIYPHVLKSCPDVLESRGTKMVHTQIVKSGFE-QY----PVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMI 188 (529)
Q Consensus 115 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll 188 (529)
..+..+...+...+++++|...++.+.+.... ++ ..+++.+..+|...| ++++|...|++..
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al----------- 182 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQIL----------- 182 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH-----------
Confidence 12334566677788999999999999874322 22 236788888888888 8888888876653
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcc-cCCCCCC-HHHHHHHHHHhhcc
Q 009663 189 SGYTRVGDIKNAASLFDSMPDR---DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEV-SDNIRPN-QVTLVCALSAIGHT 263 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~p~-~~~~~~ll~~~~~~ 263 (529)
+.++..... ...+|..+...|.+.|++++|+..+++..... ..+..+. ...+..+..++...
T Consensus 183 -------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 183 -------------KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp -------------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred -------------HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 222222111 12245555566666666666666655543210 0011111 44555666666666
Q ss_pred CC-chHHHHHHHHHHH
Q 009663 264 GM-LQLGKVIHGYVYR 278 (529)
Q Consensus 264 ~~-~~~a~~~~~~~~~ 278 (529)
|+ .++|...++++..
T Consensus 250 g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 250 EYEEAEIEDAYKKASF 265 (293)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 63 3666666665553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=7.5e-07 Score=75.90 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..|++++++.|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 57777888888999999999988887 3344 678888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHH-HHHHHHhhCCC
Q 009663 469 LGKWDEVR-KVRKMLKDRNA 487 (529)
Q Consensus 469 ~g~~~~a~-~~~~~~~~~~~ 487 (529)
.|+.+++. ..++.+...+.
T Consensus 169 ~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 88888877 55666655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=70.48 Aligned_cols=98 Identities=16% Similarity=0.064 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|+..++++.+..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5678888999999999999999999988 66787 678888899999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC
Q 009663 464 NIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999987653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=68.01 Aligned_cols=97 Identities=25% Similarity=0.297 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIE-PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+...|++++|.++++++ ... .+..++..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999988 333 467888999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCC
Q 009663 468 ELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~~ 486 (529)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.4e-07 Score=71.89 Aligned_cols=91 Identities=16% Similarity=0.081 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM-KIEPD-------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEI-------DP 453 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p 453 (529)
.....+.+.|++++|+..|++. .+.|+ ...|..+..++.+.|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344445555555555555544 22222 337888888899999999999999999998 99
Q ss_pred CCchhH----HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 454 NNGGYG----IMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 454 ~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
++...| ...+.++...|++++|+..|++..+.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 988888 99999999999999999999888654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.2e-07 Score=75.82 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=98.2
Q ss_pred hCCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhccc-CCCCC-CHHHHHHHHHHHhCCCcHH
Q 009663 297 KCGSLKEARR---AFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQD-HNIRP-DGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 297 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~ 371 (529)
..|++++|.+ .+..........+..+...+...|++++|...+++...... .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332222344666677777777777777777776654211 11222 2345666777778888888
Q ss_pred HHHHHHHHhHHh---cCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 009663 372 QGRAYFKLMTKT---YRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPD----EVVWGSLLNGCKIYGRT 438 (529)
Q Consensus 372 ~a~~~~~~~~~~---~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 438 (529)
+|...+++..+. .+-.| ....+..+...+...|++++|...+++. ....+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888876643 12111 1345677788888888888888888765 11122 23456777788889999
Q ss_pred HHHHHHHHHHHhc
Q 009663 439 DFAEFAVKKLIEI 451 (529)
Q Consensus 439 ~~A~~~~~~~~~~ 451 (529)
++|...++++.++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=71.88 Aligned_cols=96 Identities=8% Similarity=0.068 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555666666666666666666665 3333 45566666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 009663 468 ELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 468 ~~g~~~~a~~~~~~~~~~ 485 (529)
..|++++|+..+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666666544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=72.99 Aligned_cols=128 Identities=9% Similarity=0.054 Sum_probs=100.4
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCC
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDL-LGRAGR 405 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~ 405 (529)
...|++++|+..+++... . .+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ |...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~---~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR---A-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHH---H-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHH---h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCC
Confidence 456788999999988865 2 23356788888889999999999999999988642 2357788888888 788999
Q ss_pred h--HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 406 F--EEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 406 ~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+ ++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++....
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 8 9999999987 4445 5788888999999999999999999999999998765443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-05 Score=73.31 Aligned_cols=32 Identities=22% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+.++.+...++.+|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34666777777888888888888888877753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-06 Score=67.33 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 3344 6888899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 009663 467 GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~~~ 486 (529)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=68.98 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=44.1
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEPQ-I---EHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----EVVWGSLLNG 431 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 431 (529)
...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555533 222 1 24444444555555555555555444 21221 3334444444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchh
Q 009663 432 CKIYGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 432 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
+...|++++|...++++.+..|+++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 555555555555555555555544333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.0002 Score=65.51 Aligned_cols=232 Identities=12% Similarity=0.035 Sum_probs=161.9
Q ss_pred HHHHhCCChhHHHHHHHHhhhcccCCCCCCH-HHHHHHHHHhhccC-CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh
Q 009663 220 AGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ-VTLVCALSAIGHTG-MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGK 297 (529)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 297 (529)
....+.+..++|++++..+.. +.|+. ..++.--.++...| .+++++.+++.++...++ +..+|+.-..++..
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~-----~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVR-----MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH-----hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 334445566789999998884 45544 44666666666667 588999999999887654 56667766666666
Q ss_pred C-C-CHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChh--------HHHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 009663 298 C-G-SLKEARRAFDRNSKKR---LTSWNSMINSFALHGQSE--------NSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364 (529)
Q Consensus 298 ~-g-~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~ 364 (529)
. + ++++++++++++.+.+ ..+|+--.-.+.+.|.++ ++++.++++.+ .. .-|...|+.....+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HC-TTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hC-CCCHHHHHHHHHHH
Confidence 5 6 8889999999887654 446666555555555566 89999999875 32 23667787777777
Q ss_pred hCCCc-------HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC
Q 009663 365 THGGL-------VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRF--------------------EEALEVVKGM 416 (529)
Q Consensus 365 ~~~~~-------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~ 416 (529)
.+.+. ++++.+.++++... .| |...|+.+-..+.+.|+. .+..+...++
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 77765 68888888888854 55 678888877777777654 3444444444
Q ss_pred -CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCchhHHHHHH
Q 009663 417 -KI-------EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLI-EIDPNNGGYGIMLAN 464 (529)
Q Consensus 417 -~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 464 (529)
+. .++...+..+++.|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 21 3578888999999999999999999999997 578866666655443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=83.61 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 4444 68889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHH-HHHHHhhCC
Q 009663 468 ELGKWDEVRK-VRKMLKDRN 486 (529)
Q Consensus 468 ~~g~~~~a~~-~~~~~~~~~ 486 (529)
+.|+++++.+ .+++|..+-
T Consensus 397 ~~~~~~~a~~~~~~~~f~k~ 416 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKKF 416 (457)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 9999988874 466665443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=85.21 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=49.4
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG 404 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 404 (529)
.+.|++++|++.|++..+ . .| +...+..+..++.+.|++++|...++++.+. .| +...+..+..+|.+.|
T Consensus 17 ~~~g~~~~A~~~~~~Al~---~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIE---L--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp TTTTCHHHHHHHHHHHHH---H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHH---h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 344555555555555443 1 12 2344445555555555555555555555422 23 3445555555555555
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 009663 405 RFEEALEVVKGM-KIEP-DEVVWGSLLNG--CKIYGRTDFAEFAVK 446 (529)
Q Consensus 405 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 446 (529)
++++|.+.|++. ...| +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555544 2222 12222223322 444555555555555
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-06 Score=66.83 Aligned_cols=112 Identities=12% Similarity=-0.034 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSL 428 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 428 (529)
.+...+..+...+...|++++|...|+...+. .| +...+..+..+|...|++++|...+++. ...| +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45677888888888899999999999988754 34 5778888899999999999999999887 3344 57888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPN-----NGGYGIMLANIY 466 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 466 (529)
..++...|++++|+..++++.+..|+ +..+...+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886 455555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=68.52 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C----HHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP----D----EVV 424 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~ 424 (529)
..+..+...+.+.|++++|+..|+++.+. .| +...|..+..+|.+.|++++|++.+++. .+.| + ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34566777788888888888888888754 45 5777888888888888888888888776 2222 2 246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
|..+..++...|++++|++.|+++++..| ++.....+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 77788889999999999999999999888 55544433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.2e-06 Score=68.05 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.|..+...+...|++++|...|++... . .+.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~---~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a 88 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE---L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH---h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 566677778888888888888888765 2 22356677778888888899999999998887541 23577888888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-DEVVWGS--LLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
.++...|++++|...|++. ...| +...+.. .+..+...|++++|+..+.+...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999999999998887 3334 4445533 33347778899999998887765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=86.22 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=100.3
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 437 (529)
...+...|++++|...|+++.+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566789999999999999865 55 5889999999999999999999999988 5555 67889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHH
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANI--YGELGKWDEVRKVRK 480 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 480 (529)
+++|++.++++++..|++...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 888899999999988
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-07 Score=70.04 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHhHHhcCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRI-EP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAE 442 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 442 (529)
.|++++|+..|+++.+. +. .| +...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555555556555521 10 12 2344555555555555555555555554 2223 3444555555555555555555
Q ss_pred HHHHHHHhcCCCCch
Q 009663 443 FAVKKLIEIDPNNGG 457 (529)
Q Consensus 443 ~~~~~~~~~~p~~~~ 457 (529)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-06 Score=64.24 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEPD-E---VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN---GGYGIMLANI 465 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 465 (529)
..+...+...|++++|...|+++ ...|+ . ..+..+..++...|++++|+..++++.+..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34566778888888888888877 32333 2 467777888888888888888888888888887 6778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 009663 466 YGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 466 ~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-06 Score=66.76 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KI-EPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN-------GGYGI 460 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 460 (529)
...+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++.+..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777778888888888888776 22 3367778888888888999999999999998887765 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 461 MLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++.++...|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88999999999999999998887643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=71.02 Aligned_cols=103 Identities=16% Similarity=0.027 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcC------C---------CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYR------I---------EP-QIEHYGCLVDLLGRAGRFEEALEVVKGM- 416 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 416 (529)
...+......+.+.|++++|...|.+...... - .| +...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455666677777777777777777664200 0 11 1234455555555555555555555544
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 009663 417 KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 417 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
.+.| +...|..+..++...|++++|+..|+++++++|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2223 344555555555555555555555555555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.35 E-value=4e-06 Score=78.93 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..|++++++.|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999988 6566 5788999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHH
Q 009663 467 GELGKWDEVRKV 478 (529)
Q Consensus 467 ~~~g~~~~a~~~ 478 (529)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=81.85 Aligned_cols=148 Identities=13% Similarity=0.021 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.+..+...+.+.|++++|+..|++... ..|+... +...++.+++...+ . ...|..+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~-----~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla 237 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA-----YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH-----HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHH
Confidence 566666677777788888887777754 3343321 22334444433222 1 13677888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCHHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY-GELGKWDE 474 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 474 (529)
.+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..+..+. ...+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999887 4445 6788888999999999999999999999999999888888888774 34567788
Q ss_pred HHHHHHHHhhCCCc
Q 009663 475 VRKVRKMLKDRNAY 488 (529)
Q Consensus 475 a~~~~~~~~~~~~~ 488 (529)
+...+++|......
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 88888888765543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=65.96 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=76.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCK 433 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 433 (529)
+..+...+.+.|++++|...|+++.+. .| +...|..+..++...|++++|+..|++. .+.| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445566777889999999999998854 45 6788888889999999999999999887 5555 5778888888999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCc
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~ 456 (529)
..|++++|+..++++++.+|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999888653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-06 Score=66.25 Aligned_cols=111 Identities=7% Similarity=-0.057 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KI----EPD----EVVW 425 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 425 (529)
..+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...+++. .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 445666667777788888888888777541 235667777788888888888888888776 21 222 6678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 426 GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 426 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
..+..++...|++++|...++++.+..| ++.....+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 8888889999999999999999999888 67766666655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-06 Score=63.11 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP---DEVVWGSLLN 430 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 430 (529)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 445667777888888888888888887541 235677888888888899999998888877 3344 4778888888
Q ss_pred HHHHc-CCHHHHHHHHHHHHhcCCCCc
Q 009663 431 GCKIY-GRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 431 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 456 (529)
.+... |++++|.+.++++....|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 89999 999999999999999888654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.1e-06 Score=75.69 Aligned_cols=109 Identities=10% Similarity=-0.113 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 009663 353 DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLL 429 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 429 (529)
+...+..+...+...|++++|...|+++.+. .| +...|..+..+|.+.|++++|...+++. ...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566777888888999999999999998864 45 6788889999999999999999999887 5566 577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.++...|++++|+..|+++.+++|+++..+...+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 99999999999999999999988876544443333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.2e-06 Score=79.32 Aligned_cols=165 Identities=6% Similarity=-0.136 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHH----HHHHHHHHHhCCCcHHHHHHHHHHhHHh---cCCCCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGV----TFISLLNACTHGGLVEQGRAYFKLMTKT---YRIEPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~- 389 (529)
++..+...|...|++++|.+++..+... .+..++.. ..+.+-..+...|+++.|..+++..... .+..+.
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEY--MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHH--HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 3566777888888888888888776542 11112221 2233334455678889998888776532 122332
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC---
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-----K--IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID---PNN--- 455 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~--- 455 (529)
..++..+...|...|++++|..++++. + ..+ ...++..++..|...|++++|...++++.... +++
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 567788899999999999999998876 1 122 25577788888999999999999999988743 222
Q ss_pred -chhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 456 -GGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 456 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
..++..++..+...|++++|...+.+..+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24566677778888999999988777753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-06 Score=69.35 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
..|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..+++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 345555555555666666666666666666655566666666666666666666665555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=68.95 Aligned_cols=130 Identities=20% Similarity=0.052 Sum_probs=86.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM----KIEPD----EV 423 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 423 (529)
++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666665532110111 235666777777788888877777765 11111 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDP------NNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+..+...+...|++++|...++++.+..+ .....+..++.++...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566777788889999999999888887431 12456778888899999999999998887643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00013 Score=66.53 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=122.7
Q ss_pred HhCCChh-HHHHHHHHhhhcccCCCCCCHHH-HHHHHHHhhccCC----------chHHHHHHHHHHHhCCCCCccHHHH
Q 009663 223 TQNGLFS-DAISFFRRMGMEVSDNIRPNQVT-LVCALSAIGHTGM----------LQLGKVIHGYVYRNGLDLDSFISNA 290 (529)
Q Consensus 223 ~~~g~~~-~A~~~~~~m~~~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (529)
.+.|.++ +|++++..+. ...|+..| ++.--.++...+. +++++.+++.+....+. +..+|+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L-----~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQIL-----GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHH-----TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHH-----HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3455554 6788888777 45665443 3332222222221 45667777777766543 5556666
Q ss_pred HHHHHHhCC--CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC-hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 009663 291 LIDMYGKCG--SLKEARRAFDRNSK---KRLTSWNSMINSFALHGQ-SENSICVFEEMMRCQDHNIRPDGVTFISLLNAC 364 (529)
Q Consensus 291 l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~ 364 (529)
-..++...| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+.++.+ .. +-|...|+.....+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~---~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HC-SCCHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---HC-CCCHHHHHHHHHHH
Confidence 555666666 36777777766543 344566665556666666 4677777777764 22 22444444433333
Q ss_pred hCC--------------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc-----------CChHHHHHHHHhC-C
Q 009663 365 THG--------------GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA-----------GRFEEALEVVKGM-K 417 (529)
Q Consensus 365 ~~~--------------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~ 417 (529)
... +.++++.+.+...... .| |...|+.+-..+.+. +.++++++.++++ .
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 222 3466677777766643 44 455665544444443 3455666666665 4
Q ss_pred CCCCH-HHHHHHHH---HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 418 IEPDE-VVWGSLLN---GCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 418 ~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
..||. .++..++. +....|..++....+.++.+++|.....|..+..
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 44542 22211111 1112455666666777777777655555554433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=73.91 Aligned_cols=126 Identities=8% Similarity=-0.019 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC----------------HHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD----------------GVTFISLLNACTHGGLVEQGRAYFKLM 380 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 380 (529)
..|..+...+.+.|++++|+..|++..+ . .|+ ...|..+..++.+.|++++|...++++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVS---W--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---H--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---H--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677777888888888888888888865 2 232 477888888999999999999999999
Q ss_pred HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 009663 381 TKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFA-EFAVKKLIE 450 (529)
Q Consensus 381 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 450 (529)
.+. .| +...|..+..+|...|++++|...|++. .+.| +...+..+..++...|++++| ...++++..
T Consensus 223 l~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 223 LEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 854 45 6888999999999999999999999987 4455 577888888889999999888 456666654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=67.06 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=67.4
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 402 RAGRFEEALEVVKGM-KI---EP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
..|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++.+|+++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 457888888888887 54 24 45677888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 009663 477 KVRKMLKDRN 486 (529)
Q Consensus 477 ~~~~~~~~~~ 486 (529)
..+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9988887653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00026 Score=64.51 Aligned_cols=217 Identities=12% Similarity=0.046 Sum_probs=150.8
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC----------HHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 009663 262 HTGML-QLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS----------LKEARRAFDRNSK---KRLTSWNSMINSFA 327 (529)
Q Consensus 262 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 327 (529)
+.|.+ ++|+.+++.++..++. +..+++.--.++...+. +++++.+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44554 4789999999887653 33445544333333332 5778888877653 45668887777777
Q ss_pred HcCC--hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCc-HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 009663 328 LHGQ--SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGL-VEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA 403 (529)
Q Consensus 328 ~~~~--~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 403 (529)
..++ +++++.++.++.+ . -+-|...|+.-.-.+...|. ++++.+.++.+.+. .| |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~---~-dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLE---A-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHh
Confidence 8774 8899999999975 2 23366677766666666777 68999999999865 44 677887776666655
Q ss_pred --------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCc
Q 009663 404 --------------GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY-----------GRTDFAEFAVKKLIEIDPNNG 456 (529)
Q Consensus 404 --------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 456 (529)
+.++++++.+... ...| |...|+.+-..+.+. +.++++++.++++.++.|++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 4578888888877 4455 677776655555444 457899999999999999886
Q ss_pred hhHHHHHHHH---HhcCCHHHHHHHHHHHhhCC
Q 009663 457 GYGIMLANIY---GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 457 ~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~ 486 (529)
..+..++... ...|..+++...+.++.+-.
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 5554443322 24678889999999887543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=78.07 Aligned_cols=129 Identities=11% Similarity=0.035 Sum_probs=100.5
Q ss_pred HHhCCCcHHHHHHHHHHhHHhcC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 009663 363 ACTHGGLVEQGRAYFKLMTKTYR--IEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEPD-EVVWG 426 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 426 (529)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999998888764311 112 2567899999999999999999988876 23343 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCccCC
Q 009663 427 SLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNGGYG---IMLANIYGELGKWDEVRKVRKMLKDRNAYKTP 491 (529)
Q Consensus 427 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 491 (529)
.|...|...|++++|+.+++++++ ++|++|.+. ..+..++...|++++|..++.++++......|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987 678776654 56777888999999999999999886654444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-06 Score=67.85 Aligned_cols=105 Identities=18% Similarity=0.097 Sum_probs=81.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CC----
Q 009663 357 FISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-------------IEHYGCLVDLLGRAGRFEEALEVVKGM-KI---- 418 (529)
Q Consensus 357 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 418 (529)
+......+.+.|++++|...|++..+- .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444455566677888888888777643 333 227888888889999998888888776 44
Q ss_pred ---CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009663 419 ---EPD-EVVW----GSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLAN 464 (529)
Q Consensus 419 ---~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 464 (529)
.|+ ...| .....++...|++++|+..|++++++.|++.....-+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 885 5677 889999999999999999999999999988777665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=67.71 Aligned_cols=96 Identities=15% Similarity=-0.083 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-D----------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
..+..+...+...|++++|...|++. ...| + ...+..+..++...|++++|+..++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555566666667777776666655 2222 1 3678888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
|+++.++..++.+|...|++++|+..+++..+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999987654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00048 Score=66.36 Aligned_cols=167 Identities=7% Similarity=-0.125 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH----HHHHHHHHHhhccCCchHHHHHHHHHHHh----CCCC-C
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ----VTLVCALSAIGHTGMLQLGKVIHGYVYRN----GLDL-D 284 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 284 (529)
++..++..|...|++++|.+.+..+.... +.+ ++. ...+.+-..+...|+.+.+..++...... +..+ .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYM-MQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 35667788888888888888887765321 011 121 12223333455668888888888776542 2221 2
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcC----C----C-ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-C-
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNS----K----K-RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-D- 353 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~- 353 (529)
..++..+...|...|++++|..+++++. . + ....+..++..|...|++++|..++++..........| .
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 3467778889999999999988887542 1 1 12378888899999999999999998876522222222 1
Q ss_pred -HHHHHHHHHHHhCCCcHHHHHHHHHHhHH
Q 009663 354 -GVTFISLLNACTHGGLVEQGRAYFKLMTK 382 (529)
Q Consensus 354 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 382 (529)
...+..+...+...|++++|...|.+...
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23456666777888999999888877654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=66.82 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=74.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN------GGYGI 460 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 460 (529)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888888888888888877 3344 67888888999999999999999999999999987 67777
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 009663 461 MLANIYGELGKWDEVRKVRKM 481 (529)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~ 481 (529)
.++.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888887777776655543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.6e-05 Score=74.30 Aligned_cols=167 Identities=10% Similarity=-0.047 Sum_probs=127.4
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCC
Q 009663 301 LKEARRAFDRNSK---KRLTSWNSMINSFALHGQ----------SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHG 367 (529)
Q Consensus 301 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (529)
.++|++.++++.. .+..+|+.--.++...|+ ++++++.++.+.+ . -+-+...|..-...+.+.
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~-~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---V-NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHHc
Confidence 3455666665543 233455555555555555 7889999998875 2 233667777777777888
Q ss_pred C--cHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 009663 368 G--LVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAG-RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY------ 435 (529)
Q Consensus 368 ~--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 435 (529)
+ +++++...++++.+. .| +...|+.-..++.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 679999999999865 45 6788888888888888 899999999888 5566 678888887776663
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 009663 436 --------GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDE 474 (529)
Q Consensus 436 --------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 474 (529)
+.++++++.+.++...+|++.++|..+...+.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.1e-06 Score=77.29 Aligned_cols=117 Identities=12% Similarity=-0.016 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCK 433 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 433 (529)
...+..+...+.+.|++++|...|+++... .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 345666677777888888888888887743 343221 223344444443332 137788889999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+.|++++|+..++++++++|++..++..++.+|...|++++|+..|++..+...
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999876653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=58.83 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+...+..+...+...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57778888888999999999999999999999998999999999999999999999999887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-05 Score=61.66 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
+...+..+...+...|++++|+..++++++.+|++...+..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666666666666666666666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=63.67 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC--HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD--GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IE 391 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 391 (529)
++..+...+...|++++|+..+++..+..+....+. ...+..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555566666666666666666544111101111 134556666677777777777777776542111111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 392 HYGCLVDLLGRAGRFEEALEVVKGM-------KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 392 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|.+.++++.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777778888888888777765 1111 13456777788888999999999999888753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.8e-05 Score=56.08 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677777788888888888888776 3333 57778888888889999999999999999999988888888888876
Q ss_pred hcC
Q 009663 468 ELG 470 (529)
Q Consensus 468 ~~g 470 (529)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.7e-06 Score=66.30 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------CHHHHHHHHHHHhhCC
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELG-----------KWDEVRKVRKMLKDRN 486 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~ 486 (529)
+++|+..|+++++++|++..++..++.+|...| ++++|+..|++..+.+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 457777777777777777777777777776653 6777777777666554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.6e-05 Score=75.84 Aligned_cols=98 Identities=8% Similarity=-0.073 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD----------------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
...+..+...|.+.|++++|...|++. .+.|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334555555666666666666666555 22221 5788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 453 PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 453 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
|++..++..++.+|...|++++|+..|+++.+...
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.2e-05 Score=54.44 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 419 EPDEVVWGSLLNGCKIYGR---TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
+.++..+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888765554 799999999999999999999999999999999999999999999987664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.9e-05 Score=73.05 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEP-DEVVWGSLLNGCK 433 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 433 (529)
..+..+...+.+.|++++|...|+++.+. .+.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777777666532 0100 0000111110 1233 4677888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 434 IYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 434 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+.|++++|+..++++++++|+++.++..++.+|...|++++|+..+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=3.4e-05 Score=61.35 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCh----------HHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRF----------EEALEVVKGM-KIEP-DEVVWGSLLNGCK 433 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 433 (529)
.+.+++|...++...+. .| +...|..+..++...+++ ++|+..|++. .+.| +...|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 35677777777777744 45 577777777777776654 5888888877 5566 4678888888887
Q ss_pred Hc-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 434 IY-----------GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 434 ~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.. |++++|++.|+++++++|++..+...+- ..++|.++.-.+...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSSS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccccc
Confidence 76 4899999999999999998765555442 23556666655555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.5e-05 Score=56.49 Aligned_cols=67 Identities=15% Similarity=-0.065 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|+..+++..+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4667888899999999999999999999999999999999999999999999999999999987654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00031 Score=55.40 Aligned_cols=112 Identities=8% Similarity=-0.139 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEF 443 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 443 (529)
+++++|..+|++..+. | .|.. . |...|...+.+++|.++|++.-..-+...+..+...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3556666666666543 3 2222 2 555566666666666666665212456666666666666 667777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 009663 444 AVKKLIEIDPNNGGYGIMLANIYGE----LGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 444 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 487 (529)
+|+++.+. .++.....|+.+|.. .++.++|...+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777665 356677777777777 6777777777777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=51.53 Aligned_cols=66 Identities=27% Similarity=0.275 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+...+..+...+...|++++|+..++++.+..|+++.++..++.++.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356778888899999999999999999999999999999999999999999999999999987653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00048 Score=66.85 Aligned_cols=125 Identities=12% Similarity=-0.046 Sum_probs=85.0
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCC----HHHHHHHHHHHhCCCcHHHHHHHHHHhHHh----cCC-CC-ChhHHHH
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPD----GVTFISLLNACTHGGLVEQGRAYFKLMTKT----YRI-EP-QIEHYGC 395 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p-~~~~~~~ 395 (529)
+...|++++|+.++++..+....-+.|+ ..+++.|...|...|++++|..++++...- +|- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456677777777666655333333333 346777888888888888888888776532 222 22 2557888
Q ss_pred HHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 396 LVDLLGRAGRFEEALEVVKGM--------K-IEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
|...|...|++++|+.++++. | -.|+ ..+...+..++...+.+++|+..|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999988888776 2 2232 23445566677788899999999998876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00031 Score=53.22 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=63.7
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 372 QGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
.|...|+++.+ ..| +...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...|+++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777763 345 5778888888899999999999999887 3344 5778888888999999999999999999
Q ss_pred HhcCCC
Q 009663 449 IEIDPN 454 (529)
Q Consensus 449 ~~~~p~ 454 (529)
.+..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 987764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00085 Score=66.74 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=120.7
Q ss_pred HcC-ChhHHHHHHHHHhhcccCCCCCCH-HHHHHHHHHHhCCCc----------HHHHHHHHHHhHHhcCCCC-ChhHHH
Q 009663 328 LHG-QSENSICVFEEMMRCQDHNIRPDG-VTFISLLNACTHGGL----------VEQGRAYFKLMTKTYRIEP-QIEHYG 394 (529)
Q Consensus 328 ~~~-~~~~a~~~~~~m~~~~~~~~~p~~-~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~ 394 (529)
+.| ..++|++.++++.. ..|+. ..|+.--.++...|+ ++++...++.+.+. .| +...|.
T Consensus 40 ~~~~~~eeal~~~~~~l~-----~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~ 111 (567)
T 1dce_A 40 QAGELDESVLELTSQILG-----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWH 111 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH-----HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 344 44688999999975 44544 445554444544555 89999999999865 45 678888
Q ss_pred HHHHHHHhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 009663 395 CLVDLLGRAG--RFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG-RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGEL 469 (529)
Q Consensus 395 ~l~~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 469 (529)
.-..++.+.| +++++++.++++ ...| +...|+.-...+.+.| .++++++.++++++.+|.+.++|...+.++.+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 8888888999 779999999998 4444 7889999888888889 899999999999999999999999999988774
Q ss_pred --------------CCHHHHHHHHHHHhhCCC
Q 009663 470 --------------GKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 470 --------------g~~~~a~~~~~~~~~~~~ 487 (529)
+.++++++.+++......
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999888876543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00018 Score=52.84 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=59.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIEP-DEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
....+.+.|++++|.+.|++. ...| +.. .+..+..++...|++++|+..|+++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677888888888888877 3345 566 78888888999999999999999999999988776633 445
Q ss_pred HHHHHHHHHH
Q 009663 473 DEVRKVRKML 482 (529)
Q Consensus 473 ~~a~~~~~~~ 482 (529)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666666444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00064 Score=64.84 Aligned_cols=105 Identities=18% Similarity=0.043 Sum_probs=76.9
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hhHHHHH
Q 009663 402 RAGRFEEALEVVKGM---------KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNG---GYGIMLA 463 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~ 463 (529)
..|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|+++ ..++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356778887777665 12232 46788899999999999999999999987 456655 4677889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHH
Q 009663 464 NIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALES 524 (529)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (529)
.+|..+|++++|..++++..+--.. ..-.+||...++.+.|++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHhc
Confidence 9999999999999999988654221 112357777777766553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.003 Score=49.56 Aligned_cols=112 Identities=11% Similarity=-0.084 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCC
Q 009663 330 GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGR 405 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 405 (529)
+++++|+.+|++..+ .| .|+.. +...|...+.+++|..+|++..+. -++..+..|...|.. .++
T Consensus 9 ~d~~~A~~~~~~aa~---~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACE---LN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHH---TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHc---CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCcc
Confidence 467899999999887 66 34443 666777778889999999998754 467788888888888 889
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 009663 406 FEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 453 (529)
+++|.++|++.-..-++..+..+...|.. .+++++|..+|+++.+.+.
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999988223578888888888888 8999999999999998753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00052 Score=50.22 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=55.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGG-YGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|+..+++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 456678899999999999999999999999 999999999999999999999999987654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0015 Score=62.23 Aligned_cols=96 Identities=14% Similarity=0.003 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 009663 366 HGGLVEQGRAYFKLMTKTY--RIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEPD-EVVWGSLL 429 (529)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 429 (529)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887765421 1122 2467888899999999999998888776 23343 45688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCchhHHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIE-----IDPNNGGYGIM 461 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 461 (529)
..|...|++++|+.+++++++ .+|++|.+-..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999987 57877766543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00037 Score=51.27 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 453 (529)
+...+..+..+|...|++++|...|++. ...| +...|..+..++...|++++|++.+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4667777777888888888888888776 3344 466777788888888888888888888887654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.1 Score=52.01 Aligned_cols=115 Identities=9% Similarity=-0.006 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCHH--HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 009663 331 QSENSICVFEEMMRCQDHNIRPDGV--TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 331 ~~~~a~~~~~~m~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (529)
+.+.|...+....+ ...+.+... ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 229 d~~~A~~~~~~~~~--~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 DAENARLMIPSLAQ--AQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp CHHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHhhhh--ccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 55666666666543 022222211 1222222333334234445555544322 2333233333344445677777
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 409 ALEVVKGMKIEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 409 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
|...|+.|...+ ...-..=+..++...|+.++|..+|+++..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777777663222 122112233445566777777777666653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.009 Score=52.35 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=72.4
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CCHHH
Q 009663 406 FEEALEVVKGM-KIEPD---EVVWGSLLNGCKIY-----GRTDFAEFAVKKLIEIDPNN-GGYGIMLANIYGEL-GKWDE 474 (529)
Q Consensus 406 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 474 (529)
...|...+++. .+.|+ ...|..+...|... |+.++|.+.|+++++++|+. ...+...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45667777766 66776 56788888888884 99999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHhhCCCccCCcc
Q 009663 475 VRKVRKMLKDRNAYKTPGC 493 (529)
Q Consensus 475 a~~~~~~~~~~~~~~~~~~ 493 (529)
+.+.+++.........|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999998887755653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0031 Score=60.22 Aligned_cols=101 Identities=16% Similarity=0.010 Sum_probs=73.7
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTY--RIEP----QIEHYGCLVDLLGRAGRFEEALEVVKGM---------KIEPD-EVV 424 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 424 (529)
+..+...|++++|...+++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888776431 1122 2457788888898999999988888766 23333 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhHHH
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNGGYGIM 461 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 461 (529)
++.|...|...|++++|+.+++++++ .+|++|.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 78888889999999999999999887 57877766654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0017 Score=61.95 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hh
Q 009663 397 VDLLGRAGRFEEALEVVKGM-K-----IEPD----EVVWGSLLNGCKIYGRTDFAEFAVKKLIE-----IDPNNG---GY 458 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~ 458 (529)
+..+.+.|++++|+.++++. . +.|+ ..+++.++.+|...|++++|+.+++++++ .+|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566889999999999866 1 2332 45788899999999999999999999987 456655 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCccCCcccEEEECCeEEEEeeCCCCCCChHHHHHHHHHHH
Q 009663 459 GIMLANIYGELGKWDEVRKVRKMLKDRNAYKTPGCSWIEVDKQVHQFHSLDKTHPRTEEIYDALESMV 526 (529)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
+..|+.+|..+|++++|..++++..+--. ...-.+||...+++..+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHH
Confidence 77899999999999999999999865321 111236888888877776643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0099 Score=54.42 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=49.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 387 EPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
+.++.+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 335667777666666677777777777776 445776666666677777778888888887777777744
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.011 Score=54.16 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh---cC--------ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGR---AG--------RFEEALEVVKGM-KIEPDEVVWGSLLNGCKIY 435 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g--------~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 435 (529)
+..+|..+|+++.+. .|+ ...|..+..+|.- .+ ....+.+-...+ ..+.++.++..+...+...
T Consensus 214 ~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 214 SLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 346677777777643 564 3444443333321 11 012233322333 2245788888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 436 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
|++++|+..+++++.++| +...+..++.++.-.|++++|.+.+++....+..
T Consensus 291 gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999998 5677889999999999999999999998877653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.026 Score=42.51 Aligned_cols=140 Identities=9% Similarity=0.043 Sum_probs=95.1
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRF 406 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 406 (529)
.-.|..++..++..+... . .+..-|+-+|--....-+-+-..++++.+-+-+.+ ..+|++
T Consensus 18 ildG~v~qGveii~k~~~---s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~Nl 77 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNL 77 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCT
T ss_pred HHhhhHHHHHHHHHHHcC---C---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcH
Confidence 345667777776666654 1 23334444444444444555555555555433222 234555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 407 EEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 407 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
......+-.++ .+...++.-++.+...|+-++-.+++..++...|-++.+...++.+|.+.|+..+|.+++++..++|
T Consensus 78 KrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 78 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 55555555543 3556677778889999999999999999766565589999999999999999999999999999999
Q ss_pred Cc
Q 009663 487 AY 488 (529)
Q Consensus 487 ~~ 488 (529)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0034 Score=49.26 Aligned_cols=92 Identities=11% Similarity=-0.044 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAG---RFEEALEVVKGM-KIE-P--DEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 440 (529)
.....+.+.|.+..+. + .++..+...+..++++.+ +.+++..+|++. ... | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4456677777776543 3 367778888888888888 566888888887 323 5 35677777888899999999
Q ss_pred HHHHHHHHHhcCCCCchhHHH
Q 009663 441 AEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~ 461 (529)
|.+.++.+++++|++..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999977555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00018 Score=67.19 Aligned_cols=251 Identities=13% Similarity=0.129 Sum_probs=172.5
Q ss_pred ChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHH
Q 009663 61 NLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQI 140 (529)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (529)
+++.|.+.-++...|. .|..|..+.... +...+|++.|- ...|+..|..++.++.+.|.+++-..++...
T Consensus 40 ~ldRa~eyA~~~n~p~--VWs~LgkAqL~~-~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPA--VWSQLAKAQLQK-GMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSTTTTTSSSSCCCCC--CSSSHHHHTTTS-SSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccHHHHHHHHHhCCcc--HHHHHHHHHHcc-CchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444444444443443 477888888888 88888776552 2457788999999999999999999998877
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----------
Q 009663 141 VKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPD----------- 209 (529)
Q Consensus 141 ~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------- 209 (529)
.+..-.| ..=+.|+-+|++.+ +..+-.+++ ..||..-...+.+-|...|.++.|.-+|..+..
T Consensus 110 Rk~~ke~--~IDteLi~ayAk~~-rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 110 RKKARES--YVETELIFALAKTN-RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp STTCCST--TTTHHHHHHHHTSC-SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred HHHhccc--ccHHHHHHHHHhhC-cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 6654334 44467899999999 655433222 237777778888888899999988888887753
Q ss_pred -------------CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHH
Q 009663 210 -------------RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYV 276 (529)
Q Consensus 210 -------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (529)
.++.||..+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++.+.+++..
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI------vhad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHAD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 477899999999999999887755443332 1221 1223556678889999988888876
Q ss_pred HHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhh----cCCC-------ChhHHHHHHHHHHHcCChhHHHH
Q 009663 277 YRNGLDLDSFISNALIDMYGKCGSLKEARRAFDR----NSKK-------RLTSWNSMINSFALHGQSENSIC 337 (529)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~~~~~~a~~ 337 (529)
.... .....+|+-|.-.|++- ++++..+.++. +.-| ....|.-++-.|....++|.|..
T Consensus 256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6321 23566788888777764 45555555543 2222 23368888888888888887653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0081 Score=44.30 Aligned_cols=73 Identities=19% Similarity=0.068 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-----K----IEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIM 461 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 461 (529)
.-...|...+.+.|+++.|..+|+.. + -.+...++..+..++.+.|+++.|...++++.++.|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445555566666666666666554 0 12346788889999999999999999999999999998777665
Q ss_pred HH
Q 009663 462 LA 463 (529)
Q Consensus 462 l~ 463 (529)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.04 Score=57.75 Aligned_cols=130 Identities=14% Similarity=0.035 Sum_probs=80.8
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChh
Q 009663 254 VCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSE 333 (529)
Q Consensus 254 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 333 (529)
..++..+.+.|.++.|.++.+.. ..-.......|+++.|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 55555566667666666554211 112344566788898888877663 4568888999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009663 334 NSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 334 ~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
.|+++|.++.. |..+...+...|+.+...++-+..... | -++.-..+|.+.|++++|.+++
T Consensus 699 ~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 699 LAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHH
Confidence 99999988853 344444555566666655554444332 1 1223334455666766666666
Q ss_pred HhC
Q 009663 414 KGM 416 (529)
Q Consensus 414 ~~~ 416 (529)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0082 Score=47.10 Aligned_cols=65 Identities=11% Similarity=-0.055 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009663 420 PDEVVWGSLLNGCKIYG---RTDFAEFAVKKLIEID-P-NNGGYGIMLANIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 484 (529)
++..+...+..++++.+ +.++++.+++...+.+ | ++...+..++.+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555555555555544 3345555555555544 4 2344555555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=42.24 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=51.8
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 388 PQIEHYGCLVDLLGRAGR---FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 388 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
.++..+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777777777754444 68888888887 4455 5677777888888999999999999999998886
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.24 Score=51.81 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHH
Q 009663 153 TALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAI 232 (529)
Q Consensus 153 ~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 232 (529)
..++..+.+.| ..+.|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.
T Consensus 633 ~~~~~~l~~~~-~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQE-YYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTT-CHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCC-ChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHH
Confidence 66667777778 78887776532 1 122334566788888888877764 5578888888888888888888
Q ss_pred HHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHH
Q 009663 233 SFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAF 308 (529)
Q Consensus 233 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (529)
+.|..+.. |..+...+...|+.+....+-+.+...|. ++....+|.+.|++++|.++|
T Consensus 702 ~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 702 EAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 88888752 22333344445665555555444444432 333444555566666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.072 Score=42.92 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=70.4
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHH
Q 009663 292 IDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVE 371 (529)
Q Consensus 292 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 371 (529)
.+.....|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+... |..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCHH
Confidence 34556778888888887766 4566888888888888888888888888753 344444455567766
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 009663 372 QGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGMK 417 (529)
Q Consensus 372 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 417 (529)
...++-+....+ | -++.-...+.-.|+++++.++|.+.+
T Consensus 78 ~L~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 78 KLSKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 655554444332 1 23444555667788888888887765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.02 Score=42.17 Aligned_cols=67 Identities=10% Similarity=-0.099 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 420 PDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID-------PNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 420 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+...+..++..+...|+++.|...++++.+.. +..+.++..++.++.+.|++++|+.+++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 355667788899999999999999999998842 3456789999999999999999999999997654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.65 Score=37.37 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHH
Q 009663 191 YTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGK 270 (529)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 270 (529)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+...
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCHHHHH
Confidence 34456666666665554 3455666666666666666666666666541 222222333445544444
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 009663 271 VIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS 312 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 312 (529)
.+-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44444333332 3444445555667777666665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.13 Score=38.75 Aligned_cols=92 Identities=11% Similarity=-0.059 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHH
Q 009663 369 LVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE---ALEVVKGM-KIE-P--DEVVWGSLLNGCKIYGRTDFA 441 (529)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 441 (529)
....+.+-|...... | .++..+-..+..++.+..+..+ ++.+++.. ... | .......+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555555555443 3 2666666677777777776655 77777776 323 4 345566677789999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHH
Q 009663 442 EFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 442 ~~~~~~~~~~~p~~~~~~~~l 462 (529)
.+.++.+++..|++..+....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999886665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.053 Score=51.04 Aligned_cols=370 Identities=11% Similarity=0.049 Sum_probs=191.4
Q ss_pred cccccccccccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhc----------
Q 009663 2 VSVTNQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDH---------- 71 (529)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~---------- 71 (529)
.|+.+-.++.....+...-.+.+..+++..-+.-.++. .-++.+=+.|+-+|++.+ ++.+-.+.+..
T Consensus 75 dsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~-rL~elEefl~~~N~A~iq~VG 151 (624)
T 3lvg_A 75 DSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN-RLAELEEFINGPNNAHIQQVG 151 (624)
T ss_dssp TSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC-SSSTTTSTTSCCSSSCTHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC-cHHHHHHHHcCCCcccHHHHH
Confidence 35556666777777777666777777776666655444 334455568889999988 55443332211
Q ss_pred ------------------CC------------------------CCChhHHHHHHHHHhcCCCChHHHHHHHHHHHHCCC
Q 009663 72 ------------------LT------------------------TPNTYLYTAMITAYASQPAHASSAFSLYRDMVRRGQ 109 (529)
Q Consensus 72 ------------------~~------------------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~ 109 (529)
+. -.++.+|-.+-.+|... +.+.-|--.=-.++-
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~-~EfrLAqicGLniIv--- 227 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG-KEFRLAQMCGLHIVV--- 227 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS-CTTTTTTHHHHHHHC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc-hHHHHHHHhcchhcc---
Confidence 10 02233444444444444 444333222222211
Q ss_pred CCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC----C------
Q 009663 110 PQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD----R------ 179 (529)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~----~------ 179 (529)
.+.-...++..|-..|.+++...+++...... ......++.|.-.|++-. +++..+-++.... |
T Consensus 228 ---hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 228 ---HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp ---CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred ---cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHH
Confidence 11122344555566666666666666554221 345677888888888775 6666666665543 2
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHhhCC---------------CCChhhHHHHHHHHHhCCChhHHHHHHHHhhhccc
Q 009663 180 -NVVSWTAMISGYTRVGDIKNAASLFDSMP---------------DRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVS 243 (529)
Q Consensus 180 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (529)
....|..++-.|.+-.+++.|....-.-. -.+...|..-|..|.+.. +..--+++.-+..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p--- 377 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP--- 377 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT---
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc---
Confidence 34567888888888888887654321100 023334444444443321 1112222222210
Q ss_pred CCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC-----------
Q 009663 244 DNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS----------- 312 (529)
Q Consensus 244 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------- 312 (529)
.+.++ .+++.+.+.|++.....++...... -+..+-.++-+.|....+++.-+.-.+.-.
T Consensus 378 -rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~---N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rL 448 (624)
T 3lvg_A 378 -RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRL 448 (624)
T ss_dssp -TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCS---CCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHH
T ss_pred -cCChH-----HHHHHHHhcCCchhhHHHHHHHHHh---hHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHH
Confidence 11111 1122223333333333222222111 123344556677777777766555443322
Q ss_pred -CCChhHHHH-HHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCCh
Q 009663 313 -KKRLTSWNS-MINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI 390 (529)
Q Consensus 313 -~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 390 (529)
+.+..-+.. -...|.++++|++++.+.++ .++ |.-.|.....+|+.+-+.++++-..+. -+.
T Consensus 449 EkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk------Dkl------ykDAietAa~S~~~elaeeLL~yFv~~----g~~ 512 (624)
T 3lvg_A 449 EKHELIEFRRIAAYLFKGNNRWKQSVELCKK------DSL------YKDAMQYASESKDTELAEELLQWFLQE----EKR 512 (624)
T ss_dssp HTCSSHHHHHHHHHHHHTTCHHHHHSSCSST------TCC------TTGGGTTTTTCCCTTHHHHHHHHHHHH----CST
T ss_pred hhCchHHHHHHHHHHHHhcccHHHHHHHHHh------ccc------HHHHHHHHHHcCCHHHHHHHHHHHHHc----Cch
Confidence 223333333 33456667777777665433 223 223445566778888888888887754 245
Q ss_pred hHHHHHHHHHHhcCChHHHHHHH
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~ 413 (529)
..|...+-.|-..=+++-++++-
T Consensus 513 EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 513 ECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHH
Confidence 56767776776777777777763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.018 Score=50.52 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHH-cCC
Q 009663 370 VEQGRAYFKLMTKTYRIEPQ---IEHYGCLVDLLGR-----AGRFEEALEVVKGM-KIEP--DEVVWGSLLNGCKI-YGR 437 (529)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~ 437 (529)
...|...++++. .+.|+ ...|..|...|.+ .|+.++|.+.|++. .+.| +..++......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 466777777776 44776 5688889989988 49999999999998 6677 37778888888877 499
Q ss_pred HHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 438 TDFAEFAVKKLIEIDPNN-GGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
.+++.+.+++++...|.. |. ..+. ..+.-.+|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhH
Confidence 999999999999987752 33 1222 2334466777766554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.11 Score=40.10 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHhCCCcH------HHHHHHHHHhHHhcCCCCChh-HHHHHHHH------HHhcCChHHHHHHHHhC---
Q 009663 353 DGVTFISLLNACTHGGLV------EQGRAYFKLMTKTYRIEPQIE-HYGCLVDL------LGRAGRFEEALEVVKGM--- 416 (529)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~--- 416 (529)
|..+|-..+....+.|++ ++..++|+++.. .++|+.. .|...+.. +...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555555665 566666666554 3344311 11111111 12234555555555554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 417 KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
...- ..+|......-.+.|+...|.+++.+++.+.|.+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1111 4445444444555556666666666555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.1 Score=39.26 Aligned_cols=82 Identities=10% Similarity=-0.068 Sum_probs=63.6
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCHHHHHH
Q 009663 405 RFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDF---AEFAVKKLIEID-P-NNGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 405 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
.+..+.+-|.+. .-.|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|+.++.+.|++++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444443 124788888888899998887666 999999998876 5 466788889999999999999999
Q ss_pred HHHHHhhCC
Q 009663 478 VRKMLKDRN 486 (529)
Q Consensus 478 ~~~~~~~~~ 486 (529)
+++.+.+..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999997654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.18 Score=51.14 Aligned_cols=55 Identities=11% Similarity=-0.104 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLK 483 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 483 (529)
...|...|+++.|+++.++++...|.+-.+|..|+.+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4457789999999999999999999999999999999999999999999999985
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.23 Score=39.24 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 455 NGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+..+-..++.+|.+.|++++|+.+++.+..+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 3356677889999999999999998876443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.4 Score=37.14 Aligned_cols=96 Identities=10% Similarity=0.160 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHcCCh------hHHHHHHHHHhhcccCCCCCCH----HHHHHHHHH---HhCCCcHHHHHHHHHHhH
Q 009663 315 RLTSWNSMINSFALHGQS------ENSICVFEEMMRCQDHNIRPDG----VTFISLLNA---CTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~p~~----~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 381 (529)
|..+|-..+....+.|++ ++..++|++.. ..++|+. ..|..+.-- +...+++++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi----a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI----EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH----HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH----HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444555555555555555 55555555554 3344432 112222111 112245555555555554
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 382 KTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
+. +-.- ...|-...+.-.+.|++..|.+++.+.
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 32 1111 444444444445555555555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.41 E-value=2 Score=32.90 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 387 EPQIEHYGCLVDLLGRAGRFE---EALEVVKGM-KIEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 387 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.|+..+--.+..++.+..+.+ +++.+++.. ...| .......+.-++.+.|++++|.++.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666666777766543 566666666 2233 3445556667788888888888888888888887654443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.26 E-value=0.59 Score=35.37 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=38.2
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 009663 388 PQIEHYGCLVDLLGRAGRF---EEALEVVKGM-KIEP--DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYG 459 (529)
Q Consensus 388 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 459 (529)
|++.+--.+..++.+..+. .+++.++++. ...| ....+..+.-++.+.|++++|.+..+.+++..|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 4444444445555555443 3445555544 2223 244455555566666666666666666666666554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.01 E-value=9.9 Score=39.64 Aligned_cols=253 Identities=9% Similarity=-0.032 Sum_probs=126.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC----CCh--hhHHHHHHHHHhCCChhHHHHHHHHhhhccc--CCC--CCCHHHHHHHHH
Q 009663 189 SGYTRVGDIKNAASLFDSMPD----RDV--PAWNSVIAGCTQNGLFSDAISFFRRMGMEVS--DNI--RPNQVTLVCALS 258 (529)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~--~p~~~~~~~ll~ 258 (529)
-+....|+.+++..++..... .+. ..-..+.-+.+..|..+++..++........ .|- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 346677888888888887654 122 2223344455666666677777766553200 000 011111222222
Q ss_pred H--hhccCCchHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHhCCCHHHHHHHHhhcCCC-Chh--HHHHHHHHHHHcCC
Q 009663 259 A--IGHTGMLQLGKVIHGYVYRNGLDLDS--FISNALIDMYGKCGSLKEARRAFDRNSKK-RLT--SWNSMINSFALHGQ 331 (529)
Q Consensus 259 ~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~~~ 331 (529)
+ +...++ +++...+..+....-. .. ..--+|...+...|+.+....++..+.+. +.. -.-.+.-++...|+
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2 333333 3455555555543211 11 11223344455667777666666543321 222 23333344556788
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHH---HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFI---SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEE 408 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 408 (529)
.+.+..+.+.+.. ...|. .-|. ++.-+|+..|+.....+++..+... ...+......+.-++...|+.+.
T Consensus 540 ~e~~~~li~~L~~----~~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 540 QELADDLITKMLA----SDESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGGGHHHHHHHHH----CSCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred hHHHHHHHHHHHh----CCCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 8888888887753 12222 2232 2334567778877777788877642 12233333334444445666666
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 009663 409 ALEVVKGM--KIEPDEVVWGSLLNGCKIYGRT-DFAEFAVKKLIE 450 (529)
Q Consensus 409 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 450 (529)
+.++++.+ ...|....-..+.-+....|+. .+++..+..+..
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 67776655 2233333333333344444443 566777777653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=2.3 Score=32.24 Aligned_cols=148 Identities=11% Similarity=-0.024 Sum_probs=93.1
Q ss_pred hHHHHHHh--CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-CChhhHHHHHHHHH
Q 009663 116 IYPHVLKS--CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-RNVVSWTAMISGYT 192 (529)
Q Consensus 116 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~ 192 (529)
+...++.+ ..-.|..++..++..+..... +..-+|-++--....- +-+-..++++.+-. -|..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a-~C~y~v~vLd~IGkiFDis---------- 72 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESI-DCRYMFQVLDKIGSYFDLD---------- 72 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHC-CHHHHHHHHHHHGGGSCGG----------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---Cccccceeeeecchhh-chhHHHHHHHHHhhhcCcH----------
Confidence 33444444 344577777777777776643 4455555555555555 56666666665543 2221
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHH
Q 009663 193 RVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVI 272 (529)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 272 (529)
.+|++......+-.+.. +....+.-+......|+-++-.+++..+.. ..+|++.....+..+|.+.|+..++.++
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~----n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK----NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc----cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 23333333333333322 233445567778888999998888888532 4577888888888899999999999999
Q ss_pred HHHHHHhCCC
Q 009663 273 HGYVYRNGLD 282 (529)
Q Consensus 273 ~~~~~~~~~~ 282 (529)
+.++.+.|++
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 9988888863
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.5 Score=44.25 Aligned_cols=68 Identities=12% Similarity=0.003 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCccCCc
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD-----RNAYKTPG 492 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 492 (529)
...++.++...|++++++..+..+...+|-+...+..++.++.+.|+..+|++.|+.+.+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344556667778888888888888778887777888888888888888888877777643 36655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.80 E-value=15 Score=38.43 Aligned_cols=289 Identities=9% Similarity=-0.047 Sum_probs=149.7
Q ss_pred HHHHHHHHhcCCHHHH-HHHH-hhCC-CCChhhHH-HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHH--HHHHH
Q 009663 185 TAMISGYTRVGDIKNA-ASLF-DSMP-DRDVPAWN-SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTL--VCALS 258 (529)
Q Consensus 185 ~~ll~~~~~~g~~~~A-~~~~-~~~~-~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~--~~ll~ 258 (529)
.++.+++...|--.+. +... +.+. ..+..-+. ..--+....|+.++++.++...... +...+...- ..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~---~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPG---SRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTT---SCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccc---cCCCcHHHHHHHHHHH
Confidence 4667888877754322 1111 1121 12332333 3334677889999998888876531 112333332 23333
Q ss_pred HhhccCCchHHHHHHHHHHHhCC-------CCCccHHH--HHHHHHHhCCCHHHHHHHHhhcCCCChh-H-HH--HHHHH
Q 009663 259 AIGHTGMLQLGKVIHGYVYRNGL-------DLDSFISN--ALIDMYGKCGSLKEARRAFDRNSKKRLT-S-WN--SMINS 325 (529)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~--~li~~ 325 (529)
+....|..+++..++...+...- .+....-. .|.-+|...++-+-...+..-+...+.. . .. ++...
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli 499 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLC 499 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 45555655678888877665431 01112222 2333334445543333333333333322 1 12 23334
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHH--HHHHHHHHhc
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHY--GCLVDLLGRA 403 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~ 403 (529)
+.-.|+.+....++..+.+ . ..-+..-+..+.-++...|+.+.+..+.+.+... ..|....- ..+.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e---~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQE---T-QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHH---C-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhc---c-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCC
Confidence 5566777777778777654 2 2112222334444555788888888888888642 12322222 2345567888
Q ss_pred CChHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhcCC-HHHHHHH
Q 009663 404 GRFEEALEVVKGMKIEPDEVV--WGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY--GELGK-WDEVRKV 478 (529)
Q Consensus 404 g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~-~~~a~~~ 478 (529)
|+.....+++..+.-.++..+ ...+.-++...|+.+.+.++++.+.+.. ++.+....+.++ ...|. ..+|+.+
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 898877778888732333333 2233334555677665666665444422 344444333333 33444 3678888
Q ss_pred HHHHhh
Q 009663 479 RKMLKD 484 (529)
Q Consensus 479 ~~~~~~ 484 (529)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 888864
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.51 E-value=1.5 Score=34.65 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCH-------HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDG-------VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ- 389 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~- 389 (529)
++..-+..+...|.++.|+-+...+..+ .+..|+. .++..+..++...+++..|...|++..+....-+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl--~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTL--SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566677777777777777776653 2222331 24455566677777777777777775433222221
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 390 IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 390 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
......+. ....... ......+...-..+..+|.+.|++++|+.+++.+....- ++.+...|++.|
T Consensus 100 ~s~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHHHHC
T ss_pred CCcccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHHHHh
Confidence 11111010 0000000 001122334444466777788888888888776544333 556666666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.46 E-value=4.7 Score=43.81 Aligned_cols=147 Identities=7% Similarity=0.015 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC---------------
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP--------------- 352 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p--------------- 352 (529)
...++..+...+.++-+.++..-... +...--.+..+|...|++++|.++|++.. .|+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa----~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS----LVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC----CSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh----hhhcccchhhhhhccccccc
Confidence 33455566666777766665544433 33333455677778888888888887763 22211
Q ss_pred --------CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-C--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 009663 353 --------DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-Q--IEHYGCLVDLLGRAGRFEEALEVVKGMK-IEP 420 (529)
Q Consensus 353 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 420 (529)
-..-|..++..+.+.+.++.+.++-..+.+..+-.+ + ...|..+.+.+...|++++|...+-.++ ..-
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 112255666777777888888777776665422111 1 2257778888888888888888876662 122
Q ss_pred CHHHHHHHHHHHHHcCCHH
Q 009663 421 DEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~ 439 (529)
-...+..++..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 4566667776666655444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=3.6 Score=38.39 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLI 449 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 449 (529)
++..+...|++++|...+..+ ...| +...|..++.++.+.|+..+|++.|++..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555544444 2222 44455555555555555555555555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.04 E-value=3.7 Score=29.06 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=62.8
Q ss_pred CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009663 25 HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDM 104 (529)
Q Consensus 25 ~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 104 (529)
.-+++..|-+++...+- ...+.-.=+..+..+| ++++|..+.+....||...|-+|-..-. |-.+++..-+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~rl---Gl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRG-DYASALQQGNKLAYPDLEPWLALCEYRL---GLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHHHHTTSCCGGGHHHHHHHHHHH---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHHhc---ccHHHHHHHHHHH
Confidence 44677889998888765 4444333344556777 9999999999999999999988877655 7777887777788
Q ss_pred HHCCCCCCCcchHH
Q 009663 105 VRRGQPQPNQFIYP 118 (529)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (529)
...| .|....|.
T Consensus 96 a~sg--~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ--DPRIQTFV 107 (116)
T ss_dssp TTCC--CHHHHHHH
T ss_pred HhCC--CHHHHHHH
Confidence 7776 45444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.89 E-value=13 Score=35.22 Aligned_cols=190 Identities=8% Similarity=0.059 Sum_probs=113.4
Q ss_pred CCChhHHHHHHHHhhhcc--cCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH----HhC
Q 009663 225 NGLFSDAISFFRRMGMEV--SDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY----GKC 298 (529)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 298 (529)
.|+++.|++.+..+.+.. .............++..|...++++...+.+..+.+..-.. ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 378889998888877531 22344456678888888999999988888777665432221 22223333322 222
Q ss_pred CCHH--HHHHHHhhcCC---CC-------hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCC---HHHHHHHHHH
Q 009663 299 GSLK--EARRAFDRNSK---KR-------LTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPD---GVTFISLLNA 363 (529)
Q Consensus 299 g~~~--~A~~~~~~~~~---~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~l~~~ 363 (529)
...+ .-..+.+.+.. .- ......|...|...|++.+|..++..+.. ...+..+. ...+...++.
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~-Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV-ETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHH
Confidence 3222 22333332221 11 11345677888888999999998888764 11222221 1245556777
Q ss_pred HhCCCcHHHHHHHHHHhHHh-cCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 009663 364 CTHGGLVEQGRAYFKLMTKT-YRIEPQ----IEHYGCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
|...+++..|..++.++... ....++ ...+...+..+...+++.+|.+.|.+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888888876431 111222 235566677777888888887776554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.64 E-value=3.4 Score=29.19 Aligned_cols=86 Identities=9% Similarity=-0.050 Sum_probs=63.2
Q ss_pred CcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009663 25 HINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDM 104 (529)
Q Consensus 25 ~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 104 (529)
.-+++..|-+++...+- ...+.-.=+..+..+| ++++|..+.+....||...|-+|-..-. |-.+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~rl---Gl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQG-RYQEALAFAHGNPWPALEPWFALCEWHL---GLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHGGGTTCCCGGGHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHHhc---ccHHHHHHHHHHH
Confidence 44677889998888765 4444333344556777 9999999999999999999988876644 7788888888788
Q ss_pred HHCCCCCCCcchHH
Q 009663 105 VRRGQPQPNQFIYP 118 (529)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (529)
...| .|....|.
T Consensus 95 a~sg--~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS--DPALADFA 106 (115)
T ss_dssp HTCS--SHHHHHHH
T ss_pred HhCC--CHHHHHHH
Confidence 8777 55544443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.28 E-value=2.2 Score=32.31 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 009663 371 EQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP 420 (529)
Q Consensus 371 ~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 420 (529)
.+++.+++.+.+. + | ....+-.|.-++.+.|++++|.+..+.+ .+.|
T Consensus 60 ~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 60 RLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3455555555433 1 2 1333444444555555555555555554 4444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.05 E-value=6.4 Score=30.20 Aligned_cols=69 Identities=7% Similarity=-0.051 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 419 EPDEVVWGSLLNGCKIYGRT---DFAEFAVKKLIEIDPN-NGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.|+..+--.+..++.++.+. .+++.+++.+.+..|. .......|+.++.+.|++++|+++.+.+.+...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 56666666667777776643 4677777777776663 455666677777888888888887777766543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=88.42 E-value=9.7 Score=31.52 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=3.4
Q ss_pred HHHHHHhcC
Q 009663 155 LVNSYSRSG 163 (529)
Q Consensus 155 l~~~~~~~g 163 (529)
.+.++.+.|
T Consensus 101 a~~aL~~~~ 109 (211)
T 3ltm_A 101 AAVALGQIG 109 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.51 E-value=11 Score=30.80 Aligned_cols=49 Identities=14% Similarity=-0.023 Sum_probs=28.6
Q ss_pred CChHHHHHHHHhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009663 404 GRFEEALEVVKGM---KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 404 g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 452 (529)
+...++.++|..| ++.. -...|......+...|++.+|.++|+..++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3355666666555 3333 34555566666666677777777777666643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.09 E-value=6.9 Score=27.84 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVD 398 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (529)
.-+..+-++.+.. ..+.|+.....+.+++|.+.+++..|.++++.++.+.| +...+|..+++
T Consensus 26 ~~e~rrglN~l~~---~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVG---YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTT---SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhc---cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445555666655 77888988999999999999999999999988876533 33456666653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.97 E-value=7.1 Score=27.78 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 416 MKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 416 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
+.+-|++.+..+.+.+|.+.+++..|+++++-++..-.+...+|-.+
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 35678888888888888888888888888888776443334445443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.79 E-value=4.2 Score=41.39 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=41.4
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009663 156 VNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVGDIKNAASLFDSMP 208 (529)
Q Consensus 156 ~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 208 (529)
...+...| +++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566677 88888888888765 5 45688888888888888888888888876
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.17 E-value=22 Score=31.62 Aligned_cols=168 Identities=7% Similarity=0.029 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHH----HHHhhhcccCCCCCCHHHHHHHHHH
Q 009663 184 WTAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISF----FRRMGMEVSDNIRPNQVTLVCALSA 259 (529)
Q Consensus 184 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~p~~~~~~~ll~~ 259 (529)
|.++..-|.+.+++++|++++.. -...+.+.|++..|-++ .+-..+. +++++......++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~---~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLA---EVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Confidence 34455566666777777666432 12334455665554443 3333333 667777777666666
Q ss_pred hhccCCch-HHHHHHHHHH----HhC--CCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---
Q 009663 260 IGHTGMLQ-LGKVIHGYVY----RNG--LDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALH--- 329 (529)
Q Consensus 260 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--- 329 (529)
+.....-+ .-..+++.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 54432111 2233344443 222 2236677888999999999999999887532222344444444333322
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHh
Q 009663 330 GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKT 383 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 383 (529)
|...++-- ..-..++ .|...|+...|..+++...+.
T Consensus 182 ~~~~e~dl-----------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVAE-----------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHHH-----------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHHH-----------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 32222211 1112222 244468899998888877644
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.01 E-value=12 Score=40.78 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 185 TAMISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 185 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
..++..+.+.+..+.+.++..-... ++..--.+..+|...|++++|.+.|++... ++..+.... .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~----~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL----VLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC----SCTTCCCSC----------S
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hhcccchhh----------h
Confidence 3456667777888888777666654 444445667889999999999999987642 222111000 0
Q ss_pred CchHHHHHHHHHHHhCC--CCCccHHHHHHHHHHhCCCHHHHHHHHhh----cCCCCh----hHHHHHHHHHHHcCChhH
Q 009663 265 MLQLGKVIHGYVYRNGL--DLDSFISNALIDMYGKCGSLKEARRAFDR----NSKKRL----TSWNSMINSFALHGQSEN 334 (529)
Q Consensus 265 ~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~~~~~~ 334 (529)
... -+..+..... ..-..-|..++..+.+.|.++.+.++-.. ....+. ..|..+..++...|++++
T Consensus 881 ~~~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLR----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHH----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhc----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000 0011111111 11122455666666677766666555432 222221 157777788888888888
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHH
Q 009663 335 SICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQG 373 (529)
Q Consensus 335 a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 373 (529)
|...+-.+.. ... -...+..|+..+|..|..+.-
T Consensus 957 Ay~aL~~~pd---~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 957 AHVALMVLST---TPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GGHHHHHHHH---SSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhCCC---HHH--HHHHHHHHHHHHHhCCChhhh
Confidence 8888777654 333 234566666665555544433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.46 E-value=2.9 Score=36.09 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=36.9
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 399 LLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 399 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
...+.|++++|++.+..- +-.| |...=..++..++-.|+++.|.+-++-..+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 445667777777666554 3344 5555556667777777777777777777777774
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=83.14 E-value=18 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 009663 187 MISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNG 226 (529)
Q Consensus 187 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 226 (529)
.+.++.+.|+.+....+.+.+.+++...-...+.++.+.+
T Consensus 65 a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 65 AADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333334333333333333333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.71 E-value=30 Score=32.03 Aligned_cols=297 Identities=10% Similarity=0.062 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhhH--
Q 009663 150 VVETALVNSYSRSGNDIGIARKLFDEMSD--------RNVVSWTAMISGYTRV-GDIKNAASLFDSMPD---RDVPAW-- 215 (529)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~---~~~~~~-- 215 (529)
.....|...|.+.| +.++..+++..... ........++..+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEG-KAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888 88888888877764 1233455566655543 222333333332221 111222
Q ss_pred --H--HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCH---HHHHHHHHHhhccCCchHHHHHHHHHHHh--CCCCCcc
Q 009663 216 --N--SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQ---VTLVCALSAIGHTGMLQLGKVIHGYVYRN--GLDLDSF 286 (529)
Q Consensus 216 --~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 286 (529)
- .++..|...|++.+|.+++.++.+.... ..... ..+..-+..+...+++..+...+...... .+.+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1 3566677777777777777777654221 11111 12223333445555555555555544322 1111221
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHH-HcCChhHHHHHHHHHhhcccCCCCC---CHHHHHHHHH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFA-LHGQSENSICVFEEMMRCQDHNIRP---DGVTFISLLN 362 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~p---~~~~~~~l~~ 362 (529)
+... +. ..-...+. ..+++..|...|-+..+....-..| +...|..+..
T Consensus 178 i~a~-i~--------------------------~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a 230 (394)
T 3txn_A 178 VQGA-LD--------------------------LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK 230 (394)
T ss_dssp HHHH-HH--------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHH-HH--------------------------HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 1111 11 11112223 3455555555444432100011111 1123333332
Q ss_pred HHhCCCcHHHHHHHH-HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH
Q 009663 363 ACTHGGLVEQGRAYF-KLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTD 439 (529)
Q Consensus 363 ~~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 439 (529)
.. .....+ ...++ ......+ ..|....+..++.+| ..+++.+...+++.. .+..|......+-..+.+
T Consensus 231 Ll-~~~r~e-l~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~----- 301 (394)
T 3txn_A 231 IM-LGQSDD-VNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT----- 301 (394)
T ss_dssp HH-TTCGGG-HHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----
T ss_pred HH-cCCHHH-HHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----
Confidence 22 222212 11222 1211121 245555566666654 567888777887776 244455432111111000
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 009663 440 FAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNAY 488 (529)
Q Consensus 440 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 488 (529)
--...+.++ ..|-.......++..+.- ..+++...+-+|+..|.-
T Consensus 302 Ir~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 302 MLEQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 001111111 457677777777766543 688999999999988763
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.81 E-value=24 Score=30.48 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
.+.|+.+++++....-.+ .-+-|...-..++..+|-.|+++.|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR----~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445555555555554442 222344444455555566666666666655554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=81.79 E-value=21 Score=29.45 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCC
Q 009663 148 YPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGD 196 (529)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 196 (529)
+...-...+..+.+.| +.+....+.+.+.+++...-...+.++.+.++
T Consensus 32 ~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG-DERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 4444444444444444 43333333333333444333333444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 529 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 3e-08
Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 13/197 (6%)
Query: 284 DSFISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFE 340
+ + L ++ G + A F++ L ++ ++ N + ++ +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 341 EMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQI-EHYGCLVDL 399
+ ++ +L GL++ ++ + ++P + Y L +
Sbjct: 228 RALSLSPNHAV----VHGNLACVYYEQGLIDLAIDTYR---RAIELQPHFPDAYCNLANA 280
Query: 400 LGRAGRFEEALEVVK--GMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG 457
L G EA + +L N + G + A +K +E+ P
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Query: 458 YGIMLANIYGELGKWDE 474
LA++ + GK E
Sbjct: 341 AHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 1e-07
Identities = 43/348 (12%), Positives = 89/348 (25%), Gaps = 27/348 (7%)
Query: 191 YTRVGDIKNAASLFDSM----PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNI 246
+ GD + A + PD + + + Q + F +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTL-----AIKQ 62
Query: 247 RPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARR 306
P L + + H L G ++ A +
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 307 AFDRNSKKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTH 366
A+ + + + L ++ + V + +L
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNA 181
Query: 367 GGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGRFEEALEVVKGMKIEPDEVVW 425
G + + K ++P ++ Y L ++L A F+ A+ +
Sbjct: 182 QGEIWLAIHH---FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL-RALSLSPNHA 237
Query: 426 GSLLNGCKIY---GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKML 482
N +Y G D A ++ IE+ P+ LAN E G E
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
Query: 483 KDRNAYKTPGCSWI--------EVDKQVHQFHSLDKTHPRTEEIYDAL 522
+ + +++ V + + P + L
Sbjct: 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 11/187 (5%)
Query: 289 NALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVFEEMMRC 345
L ++ + A A+ R ++ + G + +I + +
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 346 QDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR 405
Q H + +L NA G V + + + L ++ G
Sbjct: 267 QPHFPD----AYCNLANALKEKGSVAEAEDCYNTAL--RLCPTHADSLNNLANIKREQGN 320
Query: 406 FEEALEVV-KGMKIEPDEV-VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463
EEA+ + K +++ P+ +L + + G+ A K+ I I P +
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Query: 464 NIYGELG 470
N E+
Sbjct: 381 NTLKEMQ 387
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 36.9 bits (85), Expect = 0.004
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 436 GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRK 477
G+ A + + I+ P + + G ++ +
Sbjct: 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE 51
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.77 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.33 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.13 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.09 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.06 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.79 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.67 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.35 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.72 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.43 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.63 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-22 Score=191.55 Aligned_cols=369 Identities=12% Similarity=0.073 Sum_probs=276.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCC
Q 009663 86 AYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGND 165 (529)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 165 (529)
.+.+. |++++|++.|+++.+.. |.+...+..+..++.+.|++++|...++.+++..+ .+..++..+..++.+.| +
T Consensus 8 ~~~~~-G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g-~ 82 (388)
T d1w3ba_ 8 REYQA-GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG-Q 82 (388)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT-C
T ss_pred HHHHc-CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhc-c
Confidence 34455 77788888887777664 44566777777777777888888888877777652 35567777777777788 7
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 166 IGIARKLFDEMSD---RNVVSWTAMISGYTRVGDIKNAASLFDSM---PDRDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 166 ~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
+++|.+.+..... .+...+..........+....+....... ..................+....+...+....
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 8888777777654 22333333333444444444333333222 22344455556666777788888888877776
Q ss_pred hcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCCh
Q 009663 240 MEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRL 316 (529)
Q Consensus 240 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 316 (529)
.. .+.+...+..+...+...|+++.|...++...+..+. +..++..+...+...|++++|...|++.. ....
T Consensus 163 ~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 237 (388)
T d1w3ba_ 163 ET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred cc----CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH
Confidence 43 2334556677777888889999999999888877543 55677888889999999999999887654 3455
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 009663 317 TSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGC 395 (529)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 395 (529)
..+..+...+.+.|++++|+..|+++.+ ..| +...+..+...+...|++++|...++..... .+.+...+..
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 310 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE-----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNN 310 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhH
Confidence 5788888999999999999999999875 234 4567888888999999999999999998764 2446788889
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 396 LVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 396 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
+...+.+.|++++|++.|++. .+.| +..++..+..++...|++++|+..|+++++++|+++.++..++.+|.+.|+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999986 6666 577888899999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.1e-21 Score=180.37 Aligned_cols=353 Identities=12% Similarity=0.047 Sum_probs=289.3
Q ss_pred HHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCC
Q 009663 120 VLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD--R-NVVSWTAMISGYTRVGD 196 (529)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~ 196 (529)
+...+.+.|++++|.+.++++.+.. +-+...+..+..++.+.| ++++|...|++..+ | +..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 3445667899999999999999875 336788899999999999 99999999999875 4 56789999999999999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHH
Q 009663 197 IKNAASLFDSMPD---RDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIH 273 (529)
Q Consensus 197 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (529)
+++|...+..... .+...+..........+....+.......... ..................+....+...+
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccchhhhhHHHH
Confidence 9999999988754 34445555555666666777766666655533 2334444455555667778888888888
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCC
Q 009663 274 GYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNI 350 (529)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 350 (529)
.......+. +...+..+...+...|++++|...+++.. ..+...|..+...+...|++++|+..+++... . .
T Consensus 159 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~ 233 (388)
T d1w3ba_ 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS---L-S 233 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH---H-C
T ss_pred HHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHH---H-h
Confidence 887776543 55677888899999999999999998654 34566899999999999999999999999875 3 2
Q ss_pred CCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 009663 351 RPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGS 427 (529)
Q Consensus 351 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 427 (529)
..+...+..+...+...|++++|...|+++.+. .| +...+..+...+...|++++|.+.++.. ..+.+...+..
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 310 (388)
T d1w3ba_ 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhH
Confidence 345667788888999999999999999998853 55 5788999999999999999999999987 33457888899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|+..+++..+..
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2e-14 Score=131.92 Aligned_cols=240 Identities=12% Similarity=0.023 Sum_probs=158.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMY 295 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (529)
.....+.+.|++++|+..|+++.+. .| +...+..+..++...|+++.|...+.++.+..+. +...+..+..+|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 97 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSF 97 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccc
Confidence 4556677777777777777777632 34 3556666666677777777777777776665432 445555566666
Q ss_pred HhCCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHH
Q 009663 296 GKCGSLKEARRAFDRNSKKRLT---SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQ 372 (529)
Q Consensus 296 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 372 (529)
...|++++|.+.+++....+.. .+..... . ....+.......+..+...+.+.+
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEE-----------------G------AGGAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------------------------------CTTHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhh-----------------h------hhhcccccchhhHHHHHHhhHHHH
Confidence 6666666666666553221110 0000000 0 000000001111122233456777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 373 GRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 373 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
|...+.++.+...-.++...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|++.++++++
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 88888877654333345677888888899999999999999887 4445 577888888999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 451 IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 451 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
.+|+++.++..++.+|.+.|++++|+..|++..+.
T Consensus 235 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.1e-14 Score=129.82 Aligned_cols=267 Identities=16% Similarity=0.087 Sum_probs=195.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCC-CHHHHHHHHHH
Q 009663 184 WTAMISGYTRVGDIKNAASLFDSMPD--R-DVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRP-NQVTLVCALSA 259 (529)
Q Consensus 184 ~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p-~~~~~~~ll~~ 259 (529)
.-.....+.+.|++++|+..|+++.+ | ++.+|..+..+|...|++++|+..|.+.... .| +...+..+..+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~ 96 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQTALMALAVS 96 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-----cccccccccccccc
Confidence 34566778899999999999999753 3 5678999999999999999999999998743 44 46677888889
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 009663 260 IGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRLTSWNSMINSFALHGQSENSICVF 339 (529)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 339 (529)
+...|++++|...++.+........ ......... .. ..+.......+..+...+...+|...+
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYA-HLVTPAEEG-AG---------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHhccchH-HHHHhhhhh-hh---------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 9999999999999999887654211 110000000 00 000111111222334456677888888
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-K 417 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 417 (529)
.+.... ....++...+..+...+...|++++|...+++.... .| +...|..+..+|...|++++|.+.|++. .
T Consensus 160 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 160 LAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 887652 223345677888888899999999999999998854 45 5788999999999999999999999987 5
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----------hHHHHHHHHHhcCCHHHHHH
Q 009663 418 IEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG-----------YGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 418 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~a~~ 477 (529)
..| +..+|..++.+|.+.|++++|+..|++++++.|++.. .+..+..++...|+.+.+..
T Consensus 235 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555 5788999999999999999999999999998887554 34455666666677665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=9.5e-10 Score=101.32 Aligned_cols=262 Identities=11% Similarity=0.025 Sum_probs=162.0
Q ss_pred HHHHHhCCChhHHHHHHHHhhhcccCCCCCC------HHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-----CccH
Q 009663 219 IAGCTQNGLFSDAISFFRRMGMEVSDNIRPN------QVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDL-----DSFI 287 (529)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 287 (529)
...+...|++++|++++++.... .|+ ...+..+..++...|++++|...++.+.+..... ....
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~-----~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEE-----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT-----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-----CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 44556677777777777766532 121 1244455566667777777777777665432111 1223
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcC-------CCC----hhHHHHHHHHHHHcCChhHHHHHHHHHhhcccC-CCCCCHH
Q 009663 288 SNALIDMYGKCGSLKEARRAFDRNS-------KKR----LTSWNSMINSFALHGQSENSICVFEEMMRCQDH-NIRPDGV 355 (529)
Q Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~p~~~ 355 (529)
+..+...+...|++..+...+.+.. .+. ...+..+...+...|+++.+...+......... +......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 4455666777777777777665432 111 124555667777888888888888776652111 1222334
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHH
Q 009663 356 TFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-----QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-----DEVV 424 (529)
Q Consensus 356 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~ 424 (529)
.+......+...+++..+...+........... ....+..+...+...|++++|...++.. ...| ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 455555666667777777777766553221111 1234555666777888888888888876 2222 2445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 425 WGSLLNGCKIYGRTDFAEFAVKKLIE------IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 425 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+..+..++...|++++|...++++.. ..|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56677778888888888888888774 22445567788888888888888888888877543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=3.2e-09 Score=97.70 Aligned_cols=264 Identities=12% Similarity=0.060 Sum_probs=156.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhhhcccC-CCCC-CHHHHHHHHHHhhccCCchHHHHHHHHHHHh----CCCCC---
Q 009663 214 AWNSVIAGCTQNGLFSDAISFFRRMGMEVSD-NIRP-NQVTLVCALSAIGHTGMLQLGKVIHGYVYRN----GLDLD--- 284 (529)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--- 284 (529)
++..+...|...|++++|+..|++....... +..+ ....+..+...+...|++..+...+...... +....
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 3445556666666666666666655421000 0011 1223344445566667777776666655432 11111
Q ss_pred ccHHHHHHHHHHhCCCHHHHHHHHhhcCC----C----ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCC-CC--
Q 009663 285 SFISNALIDMYGKCGSLKEARRAFDRNSK----K----RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIR-PD-- 353 (529)
Q Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-p~-- 353 (529)
...+..+...+...|+++.+...+..... . ....+......+...++...+...+.+.......... +.
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 12344566677777888888777765321 1 1225555666777788888888777765542112111 11
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HH
Q 009663 354 GVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP--QIEHYGCLVDLLGRAGRFEEALEVVKGM-------KIEPD-EV 423 (529)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 423 (529)
...+..+...+...|+++.|...++.......-.+ ....+..+..++...|++++|...+++. +..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 22345556667788999999999888764311111 2345566788899999999998888765 33343 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CchhHHHHHHHHHhcCCHHHHHH
Q 009663 424 VWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN---------NGGYGIMLANIYGELGKWDEVRK 477 (529)
Q Consensus 424 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~ 477 (529)
.+..+...+...|++++|.+.+++++++.+. .......+...+...|+.+++..
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 6777888899999999999999999885432 12233344455566676666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.3e-10 Score=100.53 Aligned_cols=223 Identities=11% Similarity=-0.058 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHhhhcccCCCCC--CHHHHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHH
Q 009663 227 LFSDAISFFRRMGMEVSDNIRP--NQVTLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEA 304 (529)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (529)
+.+.++.-+.+.... ....+ ...++..+..++.+.|++++|...|++.++..+. +..++..+..+|.+.|++++|
T Consensus 14 ~~e~al~~~~e~l~~--~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 14 QQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHh
Confidence 344555555555432 01111 2234555566677777788888877777776543 566777788888888888888
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 009663 305 RRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMT 381 (529)
Q Consensus 305 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 381 (529)
+..|++..+ .+..++..+..+|...|++++|+..|++..+ .. +.+......+..++...+..+.+..+.....
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh---hc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 888876543 3445777788888888888888888888765 22 1233333333334444455555554444443
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 382 KTYRIEPQIEHYGCLVDLLGRAGR----FEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 382 ~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
.. .++...+. ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|+..|++++..+|++
T Consensus 167 ~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 167 KS---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HS---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred cc---chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 21 22222222 2222222212 22222222111 11222 3466778888999999999999999999999976
Q ss_pred chhHH
Q 009663 456 GGYGI 460 (529)
Q Consensus 456 ~~~~~ 460 (529)
...+.
T Consensus 243 ~~~~~ 247 (259)
T d1xnfa_ 243 FVEHR 247 (259)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.1e-09 Score=98.93 Aligned_cols=207 Identities=9% Similarity=0.060 Sum_probs=140.6
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCC-CHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 009663 252 TLVCALSAIGHTGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCG-SLKEARRAFDRNS---KKRLTSWNSMINSFA 327 (529)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 327 (529)
.++.+...+.+.+..++|+.+++++++..+. +..+|+....++...| ++++|+..+++.. ..+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 4444555566667777777777777776543 4556666777776665 4778887777653 335567888888888
Q ss_pred HcCChhHHHHHHHHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 009663 328 LHGQSENSICVFEEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGR 405 (529)
Q Consensus 328 ~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 405 (529)
+.|++++|+..+.++.+ ..| +...|..+...+...|++++|...++.+.+. .| +...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~-----~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN-----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHTCCTTHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred hhccHHHHHHHHhhhhh-----hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccc
Confidence 88888888888888864 233 5677777888888888888888888888754 45 56677776666665554
Q ss_pred ------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHh
Q 009663 406 ------FEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN--GGYGIMLANIYGE 468 (529)
Q Consensus 406 ------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~ 468 (529)
+++|++.+.+. ...| +...|..+...+. ....+++.+.++++.++.|+. +..+..++.+|..
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 56777777765 4455 5666766655544 444677888888888877754 3445556666643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=6.9e-10 Score=100.19 Aligned_cols=194 Identities=9% Similarity=0.029 Sum_probs=160.2
Q ss_pred cHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC-ChhHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 009663 286 FISNALIDMYGKCGSLKEARRAFDRNSK---KRLTSWNSMINSFALHG-QSENSICVFEEMMRCQDHNIRPDGVTFISLL 361 (529)
Q Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~ 361 (529)
.+++.+...+.+.+.+++|+.+++++.+ .+...|+....++...| ++++|+..+++..+ . -+-+..+|..+.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~---~-~p~~~~a~~~~~ 119 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---E-QPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---H-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---H-HHhhhhHHHHHh
Confidence 3566677788899999999999998754 35568898898988877 58999999999975 2 223567888888
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC-
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR- 437 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~- 437 (529)
..+...|++++|+..++++.+. .| +...|..+...+...|++++|++.++++ .+.| +...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence 8999999999999999999854 56 6889999999999999999999999998 5566 67788888777766655
Q ss_pred -----HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 438 -----TDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 438 -----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
+++|++.+.++++.+|++...+..++.++...| .+++.+.++...+...
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 250 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTT
T ss_pred chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCC
Confidence 689999999999999999999999988766554 5778888887766543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=3.1e-10 Score=103.85 Aligned_cols=232 Identities=8% Similarity=-0.109 Sum_probs=167.1
Q ss_pred HhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC--CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCC
Q 009663 223 TQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG--MLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGS 300 (529)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 300 (529)
...|++++|+.+++..... .+-+...+..+..++...+ +++++...+..+.+..+......+......+...+.
T Consensus 84 ~~~~~~~~al~~~~~~l~~----~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc
Confidence 3455678888888888743 2334555666655555544 578899999998887654323333445577778899
Q ss_pred HHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHH
Q 009663 301 LKEARRAFDRNSKK---RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYF 377 (529)
Q Consensus 301 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 377 (529)
+++|+..++...+. +...|+.+...+.+.|++++|...+..... ..|+.. .....+...+..+++...+
T Consensus 160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~---~~~~~~~~l~~~~~a~~~~ 231 (334)
T d1dcea1 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN-----VLLKEL---ELVQNAFFTDPNDQSAWFY 231 (334)
T ss_dssp HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH-----HHHHHH---HHHHHHHHHCSSCSHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH-----hHHHHH---HHHHHHHHhcchhHHHHHH
Confidence 99999999987754 456888999999999999988776665543 122221 2222334445566677777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 378 KLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 378 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
...... -+++...+..+...+...|+.++|...+.+. ...| +..++..++.++...|++++|++.++++.+++|++
T Consensus 232 ~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 232 HRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp HHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 776643 2335556667778888899999999999887 5566 46778888889999999999999999999999998
Q ss_pred chhHHHHHHHHHh
Q 009663 456 GGYGIMLANIYGE 468 (529)
Q Consensus 456 ~~~~~~l~~~~~~ 468 (529)
..+|..|...+.-
T Consensus 310 ~~y~~~L~~~~~~ 322 (334)
T d1dcea1 310 AAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 8888888776653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=1.2e-08 Score=91.71 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=116.5
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCC---C-hhHHHHHHHHHHHcCChhHHHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKK---R-LTSWNSMINSFALHGQSENSICVFEE 341 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (529)
.+.+..++++.++...+.+...+...+..+...|+++.|..+|+++.+. + ...|...+..+.+.|+.+.|.++|.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4566777777766544444556666777777777777777777765432 2 22577777777777777777777777
Q ss_pred HhhcccCCCCCCHHHHHHHHH-HHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----
Q 009663 342 MMRCQDHNIRPDGVTFISLLN-ACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM---- 416 (529)
Q Consensus 342 m~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 416 (529)
+.+ ... .+...|..... -+...|+.+.|..+|+.+.+.+ +.++..|...++.+.+.|++++|..+|++.
T Consensus 160 al~---~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 160 ARE---DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHT---STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHH---hCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 754 221 22233333222 2234567777777777777542 334667777777777777777777777765
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009663 417 KIEPD--EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN 455 (529)
Q Consensus 417 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 455 (529)
+..|+ ...|...+..-...|+.+.+..+++++.+..|..
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 22332 4466666766667777777777777777766654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.2e-09 Score=94.13 Aligned_cols=213 Identities=11% Similarity=0.045 Sum_probs=147.8
Q ss_pred chHHHHHHHHHHHhCCCC---CccHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHH
Q 009663 266 LQLGKVIHGYVYRNGLDL---DSFISNALIDMYGKCGSLKEARRAFDRNS---KKRLTSWNSMINSFALHGQSENSICVF 339 (529)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 339 (529)
.+.++.-++++....... ...++..+..+|.+.|++++|+..|++.. ..+..+|..+..+|...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344555555555432211 23466778889999999999999998754 456779999999999999999999999
Q ss_pred HHHhhcccCCCCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 009663 340 EEMMRCQDHNIRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM- 416 (529)
Q Consensus 340 ~~m~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 416 (529)
+++.+ +.| +...+..+..++...|++++|...|+...+. .| +......+...+.+.+..+.+..+....
T Consensus 95 ~~al~-----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 95 DSVLE-----LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHH-----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHH-----HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 99976 234 4567888888999999999999999999865 45 4444444555566666655555554443
Q ss_pred CCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 417 KIEPDEVVWGSLLNGC----KIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 417 ~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...++...+.. +..+ ...+..+.+...+.......|....++..++.+|...|++++|...+++..+.++
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 167 KSDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HSCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 11222222221 1221 1223344555555555556676777888999999999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=3.6e-08 Score=88.55 Aligned_cols=181 Identities=10% Similarity=0.046 Sum_probs=142.0
Q ss_pred CHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHH
Q 009663 300 SLKEARRAFDRNS----KKRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 300 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
..++|..+|++.. ..+...|...+..+...|+++.|..+|+++.. .........|...+..+.+.|+.+.|..
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~---~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 4577888887643 23556788889999999999999999999964 3322234568888899999999999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHH-HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 009663 376 YFKLMTKTYRIEP-QIEHYGCLVDL-LGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEI 451 (529)
Q Consensus 376 ~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 451 (529)
+|+++.+. .| +...|...... +...|+.+.|..+|+.+ ..+.+...|...+..+...|+++.|..+|+++++.
T Consensus 156 i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 156 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999853 34 45555554443 34568999999999988 33346888999999999999999999999999997
Q ss_pred CCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 452 DPNNG----GYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 452 ~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.|.++ .+|...+..-...|+.+.+..+++++.+.-
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 76544 367777777778899999999999886653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=2.5e-10 Score=104.54 Aligned_cols=253 Identities=8% Similarity=-0.076 Sum_probs=177.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHH-HHH---HHHHh-------hccCCchHHHHHHHHHHHhCCCCCc
Q 009663 217 SVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVT-LVC---ALSAI-------GHTGMLQLGKVIHGYVYRNGLDLDS 285 (529)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~-~~~---ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~ 285 (529)
.++....+.+..++|++++++... ..|+..+ |+. ++..+ ...|++++++.+++.+.+..+. +.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~-----~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~ 107 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILG-----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SY 107 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHhcccccHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cH
Confidence 333333444456899999998874 4666543 322 22222 2334578899999998887643 55
Q ss_pred cHHHHHHHHHHhCC--CHHHHHHHHhhcCC---CChhHHH-HHHHHHHHcCChhHHHHHHHHHhhcccCCCCC-CHHHHH
Q 009663 286 FISNALIDMYGKCG--SLKEARRAFDRNSK---KRLTSWN-SMINSFALHGQSENSICVFEEMMRCQDHNIRP-DGVTFI 358 (529)
Q Consensus 286 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p-~~~~~~ 358 (529)
..+..+..++...+ ++++|...+.++.. ++...+. .....+...+.+++|+..++.+.+ ..| +...|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-----~~p~~~~a~~ 182 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----RNFSNYSSWH 182 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----TTCCCHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH-----cCCCCHHHHH
Confidence 56666666666655 58899998887643 3445554 444677778999999999998864 334 566788
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 009663 359 SLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRFEEALEVVKGM--KIEPDEVVWGSLLNGCKIYG 436 (529)
Q Consensus 359 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g 436 (529)
.+...+...|++++|...+....+. .|. ...+...+...+..+++...+... ...++...+..++..+...|
T Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 256 (334)
T d1dcea1 183 YRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ 256 (334)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Confidence 8888888888888776666555432 221 122333455667777777777665 22334555666677778889
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 437 RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 437 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
++++|+..+.+....+|++..++..++.++...|++++|+..++++.+..
T Consensus 257 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999997753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=5.2e-08 Score=73.04 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=64.8
Q ss_pred HHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 009663 361 LNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR 437 (529)
Q Consensus 361 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 437 (529)
...+...|++++|+..|+++.+. .| ++..|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34455566777777777766643 34 4556666666666667777766666665 3233 56666666666667777
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009663 438 TDFAEFAVKKLIEIDPNNGGYGIMLANI 465 (529)
Q Consensus 438 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 465 (529)
+++|+..|+++++.+|+++.++..+..+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777666666665544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=1.9e-08 Score=84.03 Aligned_cols=117 Identities=11% Similarity=-0.088 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 009663 352 PDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSL 428 (529)
Q Consensus 352 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 428 (529)
|+...+......+.+.|++++|+..|+++.+. .| ++..|..+..+|.+.|++++|+..|++. .+.| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 66667777777788888888888888877754 44 5777778888888888888888888776 6666 46677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 429 LNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 429 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
+.++...|++++|+..|++++++.|++...+...+..+...+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777655555444444444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=3.9e-08 Score=73.78 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=84.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3466788999999999999998 4455 6888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 009663 473 DEVRKVRKMLKDRN 486 (529)
Q Consensus 473 ~~a~~~~~~~~~~~ 486 (529)
++|+..+++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.71 E-value=3.3e-08 Score=73.48 Aligned_cols=89 Identities=16% Similarity=0.050 Sum_probs=80.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 009663 395 CLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKW 472 (529)
Q Consensus 395 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 472 (529)
.+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788899999999999987 4456 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 009663 473 DEVRKVRKMLK 483 (529)
Q Consensus 473 ~~a~~~~~~~~ 483 (529)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998863
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1.7e-07 Score=77.15 Aligned_cols=122 Identities=10% Similarity=-0.068 Sum_probs=89.1
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 009663 323 INSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLG 401 (529)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 401 (529)
...+...|+++.|++.|.++ .+|+...+..+..++...|++++|...|++..+. .| ++..|..+..+|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i-------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHH
Confidence 55667788888888887654 2456677777888888888888888888888744 45 4777888888888
Q ss_pred hcCChHHHHHHHHhC-C-CCC---------------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 402 RAGRFEEALEVVKGM-K-IEP---------------D-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 402 ~~g~~~~A~~~~~~~-~-~~p---------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
+.|++++|++.|++. . .++ + ..++..+..++...|++++|.+.++++.++.|+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 888888888877765 1 111 1 245566677778888888888888888887774
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=5.8e-08 Score=81.05 Aligned_cols=95 Identities=8% Similarity=-0.005 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHH
Q 009663 315 RLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHY 393 (529)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 393 (529)
+...+......|.+.|++++|+..|+++.. . -+-+...|..+..+|.+.|++++|+..|+.+. .+.| +...|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~ 75 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---R-NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAH 75 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHH
Confidence 334455566777778888888888877764 2 22355667777777777888888888887776 4466 46677
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM 416 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~ 416 (529)
..+..+|.+.|++++|+..|+++
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777888888888887777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.8e-07 Score=74.61 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=97.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKI 434 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 434 (529)
......|.+.|++++|...|+++.+. .| +...|..+..+|...|++++|.+.|++. .+.| +...|..++.++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 34455677899999999999999865 45 6888999999999999999999999988 5455 57889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH--hcCCHHHHHHH
Q 009663 435 YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG--ELGKWDEVRKV 478 (529)
Q Consensus 435 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 478 (529)
.|++++|+..++++..+.|+++.++..+..+.. ..+.+++|...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998888766543 34456666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.8e-07 Score=74.54 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGK 471 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 471 (529)
......|.+.|++++|+..|++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.++...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 33456788999999999999998 4455 688899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 009663 472 WDEVRKVRKMLKDRN 486 (529)
Q Consensus 472 ~~~a~~~~~~~~~~~ 486 (529)
+++|...+++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.7e-07 Score=75.11 Aligned_cols=88 Identities=17% Similarity=0.058 Sum_probs=81.6
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 009663 397 VDLLGRAGRFEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVR 476 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 476 (529)
...+...|++++|++.|.++. +|++.+|..+..++...|++++|++.|+++++++|+++.++..++.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 446788999999999999985 6788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 009663 477 KVRKMLKDR 485 (529)
Q Consensus 477 ~~~~~~~~~ 485 (529)
..|++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=8e-07 Score=78.68 Aligned_cols=166 Identities=8% Similarity=-0.022 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHH-cCChhHHHHHHHHHhhcccC-CCCC-CH
Q 009663 287 ISNALIDMYGKCGSLKEARRAFDRNSK-----KR----LTSWNSMINSFAL-HGQSENSICVFEEMMRCQDH-NIRP-DG 354 (529)
Q Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~-~~~p-~~ 354 (529)
+|..+..+|.+.|++++|...+++..+ .+ ..++..+...|.. .|++++|++.+++..++... +..+ ..
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 344445555555555555555543221 00 1134444444433 36666666666555432111 1111 12
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------H
Q 009663 355 VTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-----IEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD------E 422 (529)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~ 422 (529)
.++..+...+...|++++|...|+++.......+. ...+...+..+...|+++.|...+++. .+.|. .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 33455556666666666666666665543111110 012233444455566666666666665 33331 1
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcC
Q 009663 423 VVWGSLLNGCKI--YGRTDFAEFAVKKLIEID 452 (529)
Q Consensus 423 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 452 (529)
.....++.++.. .+.+++|+..|+++.+++
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 223344444333 223556666555544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=8.8e-07 Score=71.15 Aligned_cols=133 Identities=10% Similarity=0.080 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 009663 318 SWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLV 397 (529)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 397 (529)
.+......+.+.|++++|+..|++.....+ ..+. ....-......+. ..+|..+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~--~~~~---------------~~~~~~~~~~~~~--------~~~~~nla 69 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLE--YESS---------------FSNEEAQKAQALR--------LASHLNLA 69 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--TCCC---------------CCSHHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--hccc---------------cchHHHhhhchhH--------HHHHHHHH
Confidence 344555677777788888877777765111 0000 0000011111111 23567788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 009663 398 DLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEV 475 (529)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 475 (529)
.+|.+.|++++|+..+++. .+.| +...+..++.++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 70 ~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 70 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887 5556 7889999999999999999999999999999999999999998887666555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=1.5e-06 Score=76.76 Aligned_cols=166 Identities=11% Similarity=0.007 Sum_probs=112.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcccCC-CCC-CHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC----hhHHHH
Q 009663 322 MINSFALHGQSENSICVFEEMMRCQDHN-IRP-DGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ----IEHYGC 395 (529)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 395 (529)
....|...+++++|.+.|.++.++.... -.+ -..+|..+..+|.+.|++++|...++...+-+.-..+ ...+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 4566777778888888877776532111 111 1346777788888888888888888876542111111 345566
Q ss_pred HHHHHHh-cCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hH
Q 009663 396 LVDLLGR-AGRFEEALEVVKGM-------KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG-------YG 459 (529)
Q Consensus 396 l~~~~~~-~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~ 459 (529)
+...|.. .|++++|.+.+++. +..+ -..++..+...+...|++++|+..|+++....|.++. .+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666644 58899888888766 1111 1345777888899999999999999999987766542 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 460 IMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
...+.++...|+++.|...+++..+...
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5566677788999999999988876643
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=5.2e-07 Score=67.60 Aligned_cols=106 Identities=13% Similarity=-0.032 Sum_probs=83.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHH
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGR---FEEALEVVKGM-KIEPDE---VVWGSLL 429 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~ 429 (529)
..++..+...+++++|.+.|++..+. .| ++.++..+..++.+.++ +++|+.+|+++ ...|+. .+|..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 34667777888999999999998854 45 67888888888887554 45699999887 445543 3677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 430 NGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
.+|.+.|++++|++.|+++++++|++..+......+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999887776665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.35 E-value=4.2e-06 Score=66.93 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE 468 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 468 (529)
.+|..+..+|.+.|++++|+..++.. .+.| +...|..+..++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888899999999999999987 4444 688899999999999999999999999999999999999888887766
Q ss_pred cCCHHH-HHHHHHHHh
Q 009663 469 LGKWDE-VRKVRKMLK 483 (529)
Q Consensus 469 ~g~~~~-a~~~~~~~~ 483 (529)
.+...+ ..+.+..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665443 444555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.33 E-value=2.8e-06 Score=66.77 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
.+|..+..+|.+.|++++|++.++.. .+.| +..+|..++.++...|++++|+..|+++++++|++..+...+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46677888888999999999988887 4455 67888888899999999999999999999999988888777765543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3.8e-06 Score=67.28 Aligned_cols=64 Identities=13% Similarity=-0.083 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3566788889999999999999999999999999999999999999999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.30 E-value=9.3e-05 Score=63.90 Aligned_cols=115 Identities=15% Similarity=-0.051 Sum_probs=78.0
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 009663 367 GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRT 438 (529)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 438 (529)
......+...+..... ..+...+..|...|.. ..+...+..+++...-..+......+...+.. ..++
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 3445666666665543 2345566666666654 34566667776665223456666666666655 5689
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 009663 439 DFAEFAVKKLIEIDPNNGGYGIMLANIYGE----LGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 439 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 487 (529)
++|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.++|++..+.|.
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999999998875 56788888888875 3478899999999988875
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=4.6e-06 Score=66.81 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009663 389 QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIY 466 (529)
Q Consensus 389 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 466 (529)
....|..+..+|.+.|++++|+..++++ .+.| +...|..++.++...|++++|++.|+++++++|+++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4557778888999999999999999887 6666 5788999999999999999999999999999999998888887776
Q ss_pred HhcCCHHH
Q 009663 467 GELGKWDE 474 (529)
Q Consensus 467 ~~~g~~~~ 474 (529)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.2e-06 Score=65.06 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGG-------YGIMLA 463 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 463 (529)
+..+...|.+.|++++|+..|.+. .+.| +...+..+..+|...|++++|++.++++++++|+++. ++..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788888888888888877 4444 5788888899999999999999999999998877665 445566
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 009663 464 NIYGELGKWDEVRKVRKMLKD 484 (529)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~~~~ 484 (529)
..+...+++++|+..+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677788899999998877654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=9.7e-07 Score=66.06 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC--chhHHHHHHHH
Q 009663 394 GCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGR---TDFAEFAVKKLIEIDPNN--GGYGIMLANIY 466 (529)
Q Consensus 394 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 466 (529)
..++..+...+++++|.+.|++. ...| +..++..+..++.+.++ +++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788889999999999999998 4444 78889999999887554 557999999999988754 34788999999
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 009663 467 GELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 467 ~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+.|++++|++.|+++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.25 E-value=1.3e-05 Score=62.69 Aligned_cols=64 Identities=17% Similarity=-0.048 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.++..+..+|.+.|++++|++.++++++++|++..++..++.++...|++++|+..|++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4667788899999999999999999999999999999999999999999999999999987664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2.5e-07 Score=88.80 Aligned_cols=101 Identities=11% Similarity=-0.079 Sum_probs=47.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 009663 385 RIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIML 462 (529)
Q Consensus 385 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 462 (529)
++.| +...+..+...+.+.|+.++|...++.. ...| ..++..++..+...|++++|+..|+++.+++|++...|..|
T Consensus 114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497)
T d1ya0a1 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497)
T ss_dssp -----------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 3344 3445566666666677766666555443 1111 24555666667777777777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 463 ANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+.++...|+..+|+..|.+...-.
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Confidence 777777777777777776665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.13 E-value=3.4e-05 Score=61.44 Aligned_cols=64 Identities=9% Similarity=-0.056 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 423 VVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 423 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
.+|..+..+|.+.|++++|+..++++++++|++..++..++.++...|++++|+..|+++.+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3466677889999999999999999999999999999999999999999999999999988764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=1.5e-05 Score=64.07 Aligned_cols=118 Identities=14% Similarity=0.020 Sum_probs=83.3
Q ss_pred HHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009663 362 NACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGRF-EEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 440 (529)
......|++++|.+.|.....- .+.... ..+ ..+.+ .....-++. .....+..+...+...|++++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l---~rG~~l-----~~~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALRE---WRGPVL-----DDL-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT---CCSSTT-----GGG-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhh---Cccccc-----ccC-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchH
Confidence 4567788999998888888743 332110 000 00111 000111110 124567778889999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCccCCc
Q 009663 441 AEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKD-----RNAYKTPG 492 (529)
Q Consensus 441 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 492 (529)
|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|.+.
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 99999999999999999999999999999999999999999854 57766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.07 E-value=1.1e-05 Score=59.36 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 009663 360 LLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYG 436 (529)
Q Consensus 360 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 436 (529)
+...+.+.|++++|...|+++.+. .| ++..|..+..++.+.|++++|+..|++. .+.| +...|..+...+...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 344556667777777777777644 44 4667777777777777777777777766 4444 4667777777777777
Q ss_pred CHHHHHHHHHHHH
Q 009663 437 RTDFAEFAVKKLI 449 (529)
Q Consensus 437 ~~~~A~~~~~~~~ 449 (529)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7777777777653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=1.1e-05 Score=64.49 Aligned_cols=66 Identities=15% Similarity=-0.048 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
....+..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 355677788899999999999999999999999999999999999999999999999999998753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=0.0015 Score=57.37 Aligned_cols=212 Identities=11% Similarity=-0.105 Sum_probs=120.7
Q ss_pred ccccccccccHHHHHHHHHHccCcchHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHH
Q 009663 3 SVTNQLNQTLNQQVLAILERCNHINHLKQLQSFLTTLGQSQTNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTA 82 (529)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (529)
.+...+|+.+...+...+...|..+.|..+++.+. -+..++..+.+.+ ++..|..++.... +..+|..
T Consensus 7 ~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~-~~~~avd~~~k~~--~~~~~k~ 74 (336)
T d1b89a_ 7 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLG-EYQAAVDGARKAN--STRTWKE 74 (336)
T ss_dssp TTTTCC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTT-CHHHHHHHHHHHT--CHHHHHH
T ss_pred HHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhc-cHHHHHHHHHHcC--CHHHHHH
Confidence 34455677777777777777788888888887442 2667888888888 8999888887653 5668888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHCCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009663 83 MITAYASQPAHASSAFSLYRDMVRRGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRS 162 (529)
Q Consensus 83 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (529)
+...+... .....+ .+..... ..++.....++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 75 ~~~~l~~~-~e~~la-----~i~~~~~-~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 75 VCFACVDG-KEFRLA-----QMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHHT-TCHHHH-----HHTTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhC-cHHHHH-----HHHHHHh-hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 88888876 554432 2222332 456666778888888899999999888877543 245667788899989887
Q ss_pred CCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC------------ChhhHHHHHHHHHhCCChhH
Q 009663 163 GNDIGIARKLFDEMSDRNVVSWTAMISGYTRVGDIKNAASLFDSMPDR------------DVPAWNSVIAGCTQNGLFSD 230 (529)
Q Consensus 163 g~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~ 230 (529)
+ .++..+.++.... ......++..|-+.+-++++.-++.++... +..-....+..+.+..+.+.
T Consensus 147 ~--~~kl~e~l~~~s~--~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 147 K--PQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp C--HHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHH
T ss_pred C--hHHHHHHHHhccc--cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHH
Confidence 6 5666666655432 122223344444445555554444444432 12222334444555555554
Q ss_pred HHHHHHHh
Q 009663 231 AISFFRRM 238 (529)
Q Consensus 231 A~~~~~~m 238 (529)
..++....
T Consensus 223 ~~~~i~~y 230 (336)
T d1b89a_ 223 YYRAIQFY 230 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=8.2e-06 Score=63.19 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 009663 368 GLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRA----------GRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKI 434 (529)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 434 (529)
+.+++|...|+...+. .| ++..+..+..+|... +.+++|+..|++. .+.| +..+|..+..+|..
T Consensus 11 ~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 4455566666555533 34 344555555554422 3345566666555 3444 45566666666554
Q ss_pred cC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 435 YG-----------RTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 435 ~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.| .+++|.+.|+++++++|++..++..|... .+|.+++.++.+.|+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 43 46889999999999999988887777655 466777777777665
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=0.0022 Score=54.75 Aligned_cols=223 Identities=10% Similarity=-0.049 Sum_probs=121.2
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhc----cCCchHHHHHHHHHHHhCCCCCccH
Q 009663 212 VPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGH----TGMLQLGKVIHGYVYRNGLDLDSFI 287 (529)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 287 (529)
+..+..|...+.+.+++++|+++|++..+. | +...+..|...+.. ..+...+...+....+.+. ...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a 72 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNG 72 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cch
Confidence 444555555566666666666666665432 2 22333333333332 3455566666666555542 222
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHH----cCChhHHHHHHHHHhhcccCCCCCCHHHHH
Q 009663 288 SNALIDMYGK----CGSLKEARRAFDRNSKKRL-TSWNSMINSFAL----HGQSENSICVFEEMMRCQDHNIRPDGVTFI 358 (529)
Q Consensus 288 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~ 358 (529)
...+...+.. ..+.+.|...++...+.+. .....+...+.. ......+...+..... . .+...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~---~~~~~~~ 146 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---L---NDGDGCT 146 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---T---TCHHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc---c---cccchhh
Confidence 2333333332 3455666666655433322 222223333332 2344555555555443 2 2344555
Q ss_pred HHHHHHhC----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 009663 359 SLLNACTH----GGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGRFEEALEVVKGMKIEPDEVVWGSLLN 430 (529)
Q Consensus 359 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 430 (529)
.+...+.. ..+...+..+++...+. .+......|...|.. ..+.++|..+|++....-++..+..|..
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~ 222 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGA 222 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHH
Confidence 55555543 45667777777776542 245555556655554 5678889999988721235666667777
Q ss_pred HHHH----cCCHHHHHHHHHHHHhcCC
Q 009663 431 GCKI----YGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 431 ~~~~----~g~~~~A~~~~~~~~~~~p 453 (529)
.|.. ..+.++|.+.|+++.+.++
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 7664 3478889999999888775
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=0.0066 Score=53.20 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=82.3
Q ss_pred CCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 009663 111 QPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTAMISG 190 (529)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ll~~ 190 (529)
.||..-...+...|.+.|.++.|..++..+. -|..++.++.+.+ ++..|.+++.+. .+..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~-~~~~avd~~~k~--~~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLG-EYQAAVDGARKA--NSTRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTT-CHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhc-cHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 5666666777788888899988888886442 3456777788888 888888887765 356678888888
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccC
Q 009663 191 YTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTG 264 (529)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~ 264 (529)
+.+.....-+.- .......++.....++..|-..|.+++...+++.... .-.++...++.++..+++.+
T Consensus 79 l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~----~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 79 CVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALG----LERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----STTCCHHHHHHHHHHHHTTC
T ss_pred HHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc----CCccchHHHHHHHHHHHHhC
Confidence 887776655422 2222223455556778888888888888888887652 12456666777777777654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00016 Score=54.24 Aligned_cols=99 Identities=8% Similarity=0.014 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC-----HHHHHH
Q 009663 358 ISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KI---EPD-----EVVWGS 427 (529)
Q Consensus 358 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~-----~~~~~~ 427 (529)
..+...+...|++++|+..|.+..+. .| +...+..+..+|.+.|++++|++.++++ .+ .+. ..+|..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455566667777777777776643 34 4666777777777777777777777665 11 111 245667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 428 LLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 428 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
+...+...+++++|+..|++.....| ++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 116 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLK 116 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHH
Confidence 77778888889999999988888776 444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=5.3e-05 Score=53.46 Aligned_cols=73 Identities=19% Similarity=0.055 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009663 393 YGCLVDLLGRAGRFEEALEVVKGM----K----IEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLA 463 (529)
Q Consensus 393 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 463 (529)
+-.+...+.+.|++++|..+|++. + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335566667777777777776655 1 1222 567888999999999999999999999999999999888875
Q ss_pred HH
Q 009663 464 NI 465 (529)
Q Consensus 464 ~~ 465 (529)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.79 E-value=6.8e-05 Score=58.74 Aligned_cols=89 Identities=16% Similarity=0.007 Sum_probs=64.6
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Q 009663 397 VDLLGRAGRFEEALEVVKGM----KIEPD----------EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN-------- 454 (529)
Q Consensus 397 ~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------- 454 (529)
...+.+.|++++|+..|++. +..|+ ...|+.+..+|...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445566666666666655 11121 356788888899999999999999998875332
Q ss_pred ---CchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 455 ---NGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 455 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
...++..++.+|...|++++|+..|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235677899999999999999999998754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=1.4e-05 Score=61.89 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=70.8
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009663 400 LGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIY----------GRTDFAEFAVKKLIEIDPNNGGYGIMLANIYG 467 (529)
Q Consensus 400 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 467 (529)
|-+.+.+++|...|+.. .+.| +...+..+..++... +.+++|+..|+++++++|+++.++..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 45677899999999998 5556 677888888777643 45689999999999999999999999999998
Q ss_pred hcCC-----------HHHHHHHHHHHhhCC
Q 009663 468 ELGK-----------WDEVRKVRKMLKDRN 486 (529)
Q Consensus 468 ~~g~-----------~~~a~~~~~~~~~~~ 486 (529)
..|+ +++|.+.|++..+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 7654 578888888877554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00011 Score=51.75 Aligned_cols=66 Identities=11% Similarity=-0.100 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 421 DEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNN-------GGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 421 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+...+..++..+.+.|++++|+..|+++++..|.+ ..++..++.++.+.|++++|+..++++.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34455678888999999999999999999865432 4578899999999999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00052 Score=54.70 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009663 391 EHYGCLVDLLGRAGRFEEALEVVKGM-KIEP-DEVVWGSLLNGCKIYGRTDFAEFAVKKL 448 (529)
Q Consensus 391 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 448 (529)
..+..+...+.+.|++++|+..++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455666666666666666666665 3334 5556666666666666666666666665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=6.8e-06 Score=78.52 Aligned_cols=126 Identities=9% Similarity=-0.036 Sum_probs=47.3
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHH
Q 009663 299 GSLKEARRAFDRNSK---KRLTSWNSMINSFALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRA 375 (529)
Q Consensus 299 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 375 (529)
+.++.++..+..... .+...+..+...+.+.|+.++|...+..... . .| ..++..+...+...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~--~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---Y--IC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHH---H--HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---C--CH-HHHHHHHHHHHHHcccHHHHHH
Confidence 344444444443322 1223444555555555555555555544432 1 01 2334445555555555555555
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 009663 376 YFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-K-IEPDEVVWGSLLNGCK 433 (529)
Q Consensus 376 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 433 (529)
.|+++.+. .| +...|+.|...|...|+..+|...|.+. . .+|-..++..|...+.
T Consensus 174 ~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 174 YYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 55555532 34 3455555555555555555555555554 1 2334445555544443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.00052 Score=53.45 Aligned_cols=91 Identities=19% Similarity=0.101 Sum_probs=58.6
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC----
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEPQ----------IEHYGCLVDLLGRAGRFEEALEVVKGM--------KIEPD---- 421 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---- 421 (529)
+...|++++|+..|++...-..-.|+ ...|+.+..+|.+.|++++|...+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34456666666666665532111121 245666777777777777777666654 12222
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009663 422 -EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPN 454 (529)
Q Consensus 422 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 454 (529)
...+..+..+|...|++++|+..|++++++.|.
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 235667788999999999999999999987654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=0.00014 Score=62.15 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=70.8
Q ss_pred HHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 009663 327 ALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQ-IEHYGCLVDLLGRAGR 405 (529)
Q Consensus 327 ~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 405 (529)
.+.|++++|+..+++..+ .-+-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~----~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccc
Confidence 345777777777777653 22235566667777777777777777777777643 453 3444444444444444
Q ss_pred hHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 009663 406 FEEALEVVKGM--KIEPD-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGI 460 (529)
Q Consensus 406 ~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 460 (529)
.+++..-.... ...|+ ...+......+...|+.++|.+.++++.+..|..+..+.
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 44333322221 11232 222333344566677777777777777777776555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=8.7e-05 Score=63.53 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=87.1
Q ss_pred HhCCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 009663 364 CTHGGLVEQGRAYFKLMTKTYRIEP-QIEHYGCLVDLLGRAGRFEEALEVVKGM-KIEPD-EVVWGSLLNGCKIYGRTDF 440 (529)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 440 (529)
..+.|++++|+..+++.++. .| +...+..+...|+..|++++|.+.|+.. ...|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45679999999999999864 56 6899999999999999999999999998 55675 4555555555544444444
Q ss_pred HHHHHHHHHh-cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009663 441 AEFAVKKLIE-IDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDRN 486 (529)
Q Consensus 441 A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 486 (529)
+......... ..|++...+...+..+...|+.++|.+.++++.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3332222111 234344555566777889999999999999987654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.057 Score=49.75 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=26.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhh
Q 009663 188 ISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMG 239 (529)
Q Consensus 188 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (529)
+..+.+.++++.....+..-+ .+...-.....+....|+.+.|...+..+-
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW 129 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344555566665555443221 133333344555666677666666665553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.72 E-value=0.032 Score=39.61 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=94.8
Q ss_pred HHHcCChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 009663 326 FALHGQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGRAGR 405 (529)
Q Consensus 326 ~~~~~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 405 (529)
+.-.|..++..+++.+... . .+..-|+-++--....-+-+...+.++.+-+-+.+.| +++
T Consensus 12 ~ildG~ve~Gveii~k~~~---s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~N 71 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQN 71 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSC
T ss_pred HHHhhhHHhHHHHHHHHcc---c---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhc
Confidence 3445777777777777654 1 2334455555444455556666666666654333322 333
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009663 406 FEEALEVVKGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGELGKWDEVRKVRKMLKDR 485 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 485 (529)
+......+-.++ .+...++.-++.+..+|+-+.-.++++.+.+.+.-+|.+...++.+|.+-|...++-+++.+..++
T Consensus 72 lk~vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 72 LKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp THHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 333333333332 345566677888899999999999999977755448999999999999999999999999999999
Q ss_pred CCc
Q 009663 486 NAY 488 (529)
Q Consensus 486 ~~~ 488 (529)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 985
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.016 Score=41.74 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=28.1
Q ss_pred hHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 009663 406 FEEALEVVKGM-KIEP-D-EVVWGSLLNGCKIYGRTDFAEFAVKKLIEIDPNNGGY 458 (529)
Q Consensus 406 ~~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 458 (529)
.++++.+|++. ...| + ...+..+..+|.+.|++++|.+.++++++++|++..+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 34555555554 2123 2 2344555555666666666666666666666655443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.84 E-value=0.072 Score=39.28 Aligned_cols=82 Identities=6% Similarity=-0.187 Sum_probs=47.9
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHH
Q 009663 404 GRFEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDPNNGGYGIMLANIYGE----LGKWDEV 475 (529)
Q Consensus 404 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a 475 (529)
.+.++|++++++....-++.....|...|.. ..+.++|.++|+++.+.+ ++.....|+..|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 3455555555554111233444444444433 346777777777776653 45666667777665 3567778
Q ss_pred HHHHHHHhhCCC
Q 009663 476 RKVRKMLKDRNA 487 (529)
Q Consensus 476 ~~~~~~~~~~~~ 487 (529)
.+++++..+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 888877777665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.24 Score=35.32 Aligned_cols=69 Identities=7% Similarity=-0.051 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009663 419 EPDEVVWGSLLNGCKIYG---RTDFAEFAVKKLIEIDPNNG-GYGIMLANIYGELGKWDEVRKVRKMLKDRNA 487 (529)
Q Consensus 419 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 487 (529)
.|...+--....++.++. +.++++.+++++.+.+|.+. ..+..|+.+|.+.|++++|.+.++++.+...
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 355556556666666554 34678888888887777554 5777788888888888888888888776544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.46 E-value=0.39 Score=35.04 Aligned_cols=112 Identities=11% Similarity=-0.076 Sum_probs=74.7
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCC
Q 009663 330 GQSENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVDLLGR----AGR 405 (529)
Q Consensus 330 ~~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 405 (529)
.|+++|+++|++..+ .|... ....+. .....+.++|..++++..+. | ++.....|...|.. ..+
T Consensus 7 kd~~~A~~~~~kaa~---~g~~~---a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d 74 (133)
T d1klxa_ 7 KDLKKAIQYYVKACE---LNEMF---GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKD 74 (133)
T ss_dssp HHHHHHHHHHHHHHH---TTCTT---HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHH---CCChh---hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchh
Confidence 366788888888876 55322 122222 33456788999999888754 3 44555566666654 456
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 009663 406 FEEALEVVKGMKIEPDEVVWGSLLNGCKI----YGRTDFAEFAVKKLIEIDP 453 (529)
Q Consensus 406 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 453 (529)
.++|.++|++.-..-++.....|...|.. ..+.++|.++|+++.+.+.
T Consensus 75 ~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 75 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 88999999887212355566666666665 4589999999999888664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.43 E-value=0.52 Score=33.33 Aligned_cols=137 Identities=11% Similarity=-0.050 Sum_probs=91.0
Q ss_pred CccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCC-CChh---hHHHHHHHHHhcCCHHH
Q 009663 124 CPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSD-RNVV---SWTAMISGYTRVGDIKN 199 (529)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~-~~~~---~~~~ll~~~~~~g~~~~ 199 (529)
+.-.|..++..+++.+...+. +..-||-++--....- +-+...++++.+-. -|.. ..-.++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~-dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESI-DCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHC-CHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcccC---Cccccceeeeeccccc-chHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcc---
Confidence 445677888888887777653 4555666666666666 67777776666543 1221 12233333333332
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHhhhcccCCCCCCHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Q 009663 200 AASLFDSMPDRDVPAWNSVIAGCTQNGLFSDAISFFRRMGMEVSDNIRPNQVTLVCALSAIGHTGMLQLGKVIHGYVYRN 279 (529)
Q Consensus 200 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 279 (529)
+...++.-++...++|+-++-.++++.+.+ .-.|++.....+..+|.+.|...++.+++.++.+.
T Consensus 85 -----------~se~vdlALd~lv~~~kkd~Ld~i~~~l~k----n~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 85 -----------LNEHVNKALDILVIQGKRDKLEEIGREILK----NNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp -----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 233445566778889999998899888654 35777778888888999999999999999988888
Q ss_pred CCC
Q 009663 280 GLD 282 (529)
Q Consensus 280 ~~~ 282 (529)
|..
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=4.5 Score=36.32 Aligned_cols=374 Identities=10% Similarity=-0.014 Sum_probs=214.2
Q ss_pred hHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009663 28 HLKQLQSFLTTLGQSQ-TNFYAFKLVRFCTLKLSNLTYARFIFDHLTTPNTYLYTAMITAYASQPAHASSAFSLYRDMVR 106 (529)
Q Consensus 28 ~~~~i~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 106 (529)
...+|..-+.+.+-.| ....-..-+..+++.+ +.......+... +.+...--....+.... |+...|...+...-.
T Consensus 54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~-~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~-g~~~~a~~~~~~lW~ 130 (450)
T d1qsaa1 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARRE-DWRGLLAFSPEK-PGTTEAQCNYYYAKWNT-GQSEEAWQGAKELWL 130 (450)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT-CHHHHHHHCCSC-CSSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhcc-CHHHHHHhccCC-CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Confidence 3445555454443222 2223344456667776 777666655432 22333333455666667 888888877777766
Q ss_pred CCCCCCCcchHHHHHHhCccCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCCHHHHHHHHhhCCCCChhhHHH
Q 009663 107 RGQPQPNQFIYPHVLKSCPDVLESRGTKMVHTQIVKSGFEQYPVVETALVNSYSRSGNDIGIARKLFDEMSDRNVVSWTA 186 (529)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~ 186 (529)
.|...| +....++..+.+.| ..+...+-.-+......| +...|..+...+..........
T Consensus 131 ~~~~~p------------------~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~-~~~~a~~l~~~l~~~~~~~~~a 190 (450)
T d1qsaa1 131 TGKSQP------------------NACDKLFSVWRASG-KQDPLAYLERIRLAMKAG-NTGLVTVLAGQMPADYQTIASA 190 (450)
T ss_dssp CSSCCC------------------THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTT-CHHHHHHHHHTCCGGGHHHHHH
T ss_pred cCCCCc------------------hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC-ChhhHHHHHhhCChhHHHHHHH
Confidence 653122 22333444444444 344555555566666778 8999999888876555555555
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh--CCChhHHHHHHHHhhhcccCCCCCCHH-HHH-HHHHHhhc
Q 009663 187 MISGYTRVGDIKNAASLFDSMPDRDVPAWNSVIAGCTQ--NGLFSDAISFFRRMGMEVSDNIRPNQV-TLV-CALSAIGH 262 (529)
Q Consensus 187 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~p~~~-~~~-~ll~~~~~ 262 (529)
.+........+.. ...... .+......+..++.+ ..+.+.|...+...... ....++.. ... .+...+..
T Consensus 191 ~~~l~~~p~~~~~---~~~~~~-~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~ 264 (450)
T d1qsaa1 191 IISLANNPNTVLT---FARTTG-ATDFTRQMAAVAFASVARQDAENARLMIPSLAQA--QQLNEDQIQELRDIVAWRLMG 264 (450)
T ss_dssp HHHHHHCGGGHHH---HHHHSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHTSCS
T ss_pred HHHHHhChHhHHH---HHhcCC-CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhc--ccccHHHHHHHHHHHHHHHHH
Confidence 5555443333333 222222 233332333333332 35788888888887643 12222221 111 22233445
Q ss_pred cCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHH
Q 009663 263 TGMLQLGKVIHGYVYRNGLDLDSFISNALIDMYGKCGSLKEARRAFDRNSKKRL---TSWNSMINSFALHGQSENSICVF 339 (529)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~ 339 (529)
.+..+.+...+......+. +.......+......+++..+...+..+..... ...-=+..++...|+.+.|..+|
T Consensus 265 ~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 5677888888777666543 444445556666778999999999999875432 23344568889999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCC-ChhH-----HHHHHHHHHhcCChHHHHHHH
Q 009663 340 EEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEP-QIEH-----YGCLVDLLGRAGRFEEALEVV 413 (529)
Q Consensus 340 ~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~-----~~~l~~~~~~~g~~~~A~~~~ 413 (529)
..... .++ |..++.+-. .|..-. +... ...+ .... -..-+..+...|....|...+
T Consensus 343 ~~~a~------~~~---fYG~LAa~~-Lg~~~~-------~~~~-~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~ 404 (450)
T d1qsaa1 343 HQLMQ------QRG---FYPMVAAQR-IGEEYE-------LKID-KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEW 404 (450)
T ss_dssp HHHHT------SCS---HHHHHHHHH-TTCCCC-------CCCC-CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhc------CCC---hHHHHHHHH-cCCCCC-------CCcC-CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHH
Confidence 99853 233 444443321 221100 0000 0000 0011 112356677899999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009663 414 KGMKIEPDEVVWGSLLNGCKIYGRTDFAEFAVKKLIE 450 (529)
Q Consensus 414 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 450 (529)
..+--..+......+.....+.|.++.|+....++..
T Consensus 405 ~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 405 ANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 8772244666777788888899999999988877643
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.06 E-value=2.9 Score=27.80 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 009663 332 SENSICVFEEMMRCQDHNIRPDGVTFISLLNACTHGGLVEQGRAYFKLMTKTYRIEPQIEHYGCLVD 398 (529)
Q Consensus 332 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 398 (529)
.-++.+-+..+.. ..+.|+.....+.+++|.+.+++..|.++|+.++.+.| ++...|..+++
T Consensus 22 ~we~rrgmN~l~~---~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVG---YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTT---SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhc---cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3455555666554 77888888899999999999999999999988876533 34556665543
|