Citrus Sinensis ID: 009689
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MBA1 | 536 | Chlorophyllide a oxygenas | yes | no | 0.990 | 0.975 | 0.753 | 0.0 | |
| Q8S7E1 | 541 | Chlorophyllide a oxygenas | yes | no | 0.984 | 0.961 | 0.756 | 0.0 | |
| Q9ZWM5 | 645 | Chlorophyllide a oxygenas | N/A | no | 0.806 | 0.660 | 0.430 | 1e-113 | |
| Q9XJ38 | 463 | Chlorophyllide a oxygenas | N/A | no | 0.746 | 0.850 | 0.440 | 1e-99 | |
| Q9SK50 | 539 | Protein TIC 55, chloropla | no | no | 0.545 | 0.534 | 0.260 | 6e-21 | |
| O49931 | 553 | Protein TIC 55, chloropla | N/A | no | 0.547 | 0.522 | 0.253 | 2e-20 | |
| P12609 | 329 | Vanillate O-demethylase o | N/A | no | 0.407 | 0.653 | 0.248 | 8e-18 | |
| O05616 | 354 | Vanillate O-demethylase o | N/A | no | 0.376 | 0.562 | 0.277 | 4e-17 | |
| Q9AHG3 | 346 | Putative toluene-4-sulfon | no | no | 0.276 | 0.421 | 0.294 | 5e-14 | |
| Q44256 | 432 | 3-chlorobenzoate-3,4-diox | no | no | 0.297 | 0.363 | 0.282 | 1e-13 |
| >sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1 | Back alignment and function desciption |
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Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/532 (75%), Positives = 460/532 (86%), Gaps = 9/532 (1%)
Query: 2 TAIATAAALSLPISL--YRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVED 59
A+ + +ALSLPIS R + ++ KK V+G FRVFA+FG+E GLV+KKS W LFDVED
Sbjct: 3 AAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVED 62
Query: 60 PRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKS 119
PRSK P KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKS
Sbjct: 63 PRSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKS 122
Query: 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTC 179
IGT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL R + D+
Sbjct: 123 IGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPS 182
Query: 180 ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM------- 232
+S + S LD K KSLNVSGPV PY+ LKNFW+PVAF+ DLK DTM
Sbjct: 183 SSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFE 242
Query: 233 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 292
+PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L
Sbjct: 243 QPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKL 302
Query: 293 RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNL 352
VKIKSLPC EQEGMIWIWPGDEPP +P L PPSGF IHAE+VM+LP+EHGLLLDNL
Sbjct: 303 LKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNL 362
Query: 353 LDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK 412
LDLAHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLSTIGISK
Sbjct: 363 LDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISK 422
Query: 413 PGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQ 472
PGKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSLDFA +LK++PFM++LWRHFAEQ
Sbjct: 423 PGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQ 482
Query: 473 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 524
VLNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRLWR+A+++G +LPF
Sbjct: 483 VLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534
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Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: 2 |
| >sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1 | Back alignment and function description |
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| >sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1 | Back alignment and function description |
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| >sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1 | Back alignment and function description |
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| >sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain HR199 / DSM 7063) GN=vanA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5 SV=1 | Back alignment and function description |
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| >sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas testosteroni GN=cbaA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | ||||||
| 255545394 | 535 | chlorophyll synthase, putative [Ricinus | 0.998 | 0.985 | 0.846 | 0.0 | |
| 224082298 | 531 | predicted protein [Populus trichocarpa] | 0.992 | 0.986 | 0.849 | 0.0 | |
| 449465447 | 534 | PREDICTED: chlorophyllide a oxygenase, c | 0.990 | 0.979 | 0.811 | 0.0 | |
| 359492578 | 537 | PREDICTED: chlorophyllide a oxygenase, c | 0.996 | 0.979 | 0.831 | 0.0 | |
| 356509409 | 530 | PREDICTED: chlorophyllide a oxygenase, c | 0.990 | 0.986 | 0.834 | 0.0 | |
| 356515896 | 530 | PREDICTED: chlorophyllide a oxygenase, c | 0.990 | 0.986 | 0.829 | 0.0 | |
| 356552681 | 534 | PREDICTED: chlorophyllide a oxygenase, c | 0.982 | 0.971 | 0.824 | 0.0 | |
| 356549331 | 532 | PREDICTED: chlorophyllide a oxygenase, c | 0.982 | 0.975 | 0.822 | 0.0 | |
| 312282087 | 534 | unnamed protein product [Thellungiella h | 0.984 | 0.973 | 0.777 | 0.0 | |
| 297852214 | 536 | hypothetical protein ARALYDRAFT_473812 [ | 0.990 | 0.975 | 0.755 | 0.0 |
| >gi|255545394|ref|XP_002513757.1| chlorophyll synthase, putative [Ricinus communis] gi|223546843|gb|EEF48340.1| chlorophyll synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/534 (84%), Positives = 490/534 (91%), Gaps = 7/534 (1%)
Query: 1 MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
M +ATAAALSLPISL R +K N+KK VRGGF VFA+FGEEGG++DKKS WSTLFDVEDP
Sbjct: 1 MNTVATAAALSLPISLCRSSKHNSKKGVRGGFGVFAVFGEEGGVLDKKSVWSTLFDVEDP 60
Query: 61 RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
RSK+PQ KGKFLDVNQALEVAR+DIQYCDWRARQDVLTIMLLHEKVV+VLNPLARDYKSI
Sbjct: 61 RSKMPQLKGKFLDVNQALEVARFDIQYCDWRARQDVLTIMLLHEKVVDVLNPLARDYKSI 120
Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
GT+KKELA LQE LAQAH+QVH+SEARV+TALDKLAYMEALVNDRLL DR T+ T T
Sbjct: 121 GTVKKELAGLQEALAQAHQQVHLSEARVSTALDKLAYMEALVNDRLLPDRSTTETSHTSP 180
Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM-------E 233
S ST+ QSLD V+ + PRKSLNVSGPVQPY++ LKNFW+PVAFSTDLKDDTM E
Sbjct: 181 STSTAPQSLDTVQRRSPRKSLNVSGPVQPYHSHLKNFWYPVAFSTDLKDDTMIPIDCFEE 240
Query: 234 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 293
PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPST+L
Sbjct: 241 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLL 300
Query: 294 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 353
NVKIKSLPCFEQEGMIW+WPG +PP AT+P L PP+GF +HAEIVMELP+EHGLLLDNLL
Sbjct: 301 NVKIKSLPCFEQEGMIWVWPGSDPPAATLPSLQPPAGFHVHAEIVMELPVEHGLLLDNLL 360
Query: 354 DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 413
DLAHAPFTHTSTFAKGW+VPSLV FLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP
Sbjct: 361 DLAHAPFTHTSTFAKGWTVPSLVTFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 420
Query: 414 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV 473
GKLEG++TRQCATHLHQLHVCLPSSR+KTRLLYRMSLDFA +LKH+PFM+YLWRHFAEQV
Sbjct: 421 GKLEGKSTRQCATHLHQLHVCLPSSRQKTRLLYRMSLDFAPLLKHIPFMEYLWRHFAEQV 480
Query: 474 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMKP 527
LNEDLRLV+GQQERM NGANVWNLPV YDKLGVRYRLWRDA+E+GAKQ PF KP
Sbjct: 481 LNEDLRLVVGQQERMINGANVWNLPVTYDKLGVRYRLWRDAVERGAKQNPFSKP 534
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082298|ref|XP_002306638.1| predicted protein [Populus trichocarpa] gi|222856087|gb|EEE93634.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449465447|ref|XP_004150439.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus] gi|449513335|ref|XP_004164299.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359492578|ref|XP_002284499.2| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Vitis vinifera] gi|302141810|emb|CBI19013.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356509409|ref|XP_003523442.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356515896|ref|XP_003526633.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356552681|ref|XP_003544691.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356549331|ref|XP_003543047.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|312282087|dbj|BAJ33909.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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| >gi|297852214|ref|XP_002893988.1| hypothetical protein ARALYDRAFT_473812 [Arabidopsis lyrata subsp. lyrata] gi|297339830|gb|EFH70247.1| hypothetical protein ARALYDRAFT_473812 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | ||||||
| TAIR|locus:2823671 | 536 | CH1 "CHLORINA 1" [Arabidopsis | 0.988 | 0.973 | 0.738 | 2.4e-218 | |
| TAIR|locus:2047329 | 539 | TIC55-II "translocon at the in | 0.558 | 0.547 | 0.247 | 3.4e-16 | |
| UNIPROTKB|Q4KB09 | 352 | vanA "Vanillate O-demethylase, | 0.193 | 0.289 | 0.339 | 2.9e-11 | |
| UNIPROTKB|Q48IV9 | 354 | vanA "Vanillate monooxygenase, | 0.191 | 0.285 | 0.324 | 1.4e-10 | |
| TAIR|locus:2131406 | 559 | ACD1-LIKE "AT4G25650" [Arabido | 0.217 | 0.205 | 0.251 | 4.2e-08 | |
| UNIPROTKB|Q4KAM4 | 363 | prnD "Aminopyrrolnitrin oxidas | 0.212 | 0.308 | 0.299 | 9.1e-08 | |
| TIGR_CMR|GSU_0845 | 103 | GSU_0845 "Rieske 2Fe-2S family | 0.123 | 0.631 | 0.343 | 1.5e-06 | |
| UNIPROTKB|D5IGG0 | 378 | carAa "Carbazole 1,9a-dioxygen | 0.231 | 0.322 | 0.3 | 2e-06 | |
| ZFIN|ZDB-GENE-040718-356 | 460 | zgc:92275 "zgc:92275" [Danio r | 0.164 | 0.189 | 0.333 | 3.7e-06 | |
| TAIR|locus:2082122 | 537 | ACD1 "ACCELERATED CELL DEATH 1 | 0.187 | 0.184 | 0.300 | 1e-05 |
| TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2109 (747.5 bits), Expect = 2.4e-218, P = 2.4e-218
Identities = 392/531 (73%), Positives = 451/531 (84%)
Query: 3 AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
A+ + +ALSLPIS R + ++ KK V+G FRVFA+FG+E GLV+KKS W LFDVEDP
Sbjct: 4 AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63
Query: 61 RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
RSK P KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct: 64 RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123
Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL R + D+ +
Sbjct: 124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183
Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM-------E 233
S + S LD K KSLNVSGPV PY+ LKNFW+PVAF+ DLK DTM +
Sbjct: 184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243
Query: 234 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 293
PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L
Sbjct: 244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303
Query: 294 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGXXXXXXX 353
VKIKSLPC EQEGMIWIWPGDEPP +P L PPSGF IHAE+VM+LP+EHG
Sbjct: 304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363
Query: 354 XXAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 413
AHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLSTIGISKP
Sbjct: 364 DLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKP 423
Query: 414 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV 473
GKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSLDFA +LK++PFM++LWRHFAEQV
Sbjct: 424 GKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQV 483
Query: 474 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 524
LNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRLWR+A+++G +LPF
Sbjct: 484 LNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534
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| TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
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| TAIR|locus:2131406 ACD1-LIKE "AT4G25650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KAM4 prnD "Aminopyrrolnitrin oxidase PrnD" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_0845 GSU_0845 "Rieske 2Fe-2S family protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D5IGG0 carAa "Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa" [Sphingomonas sp. (taxid:28214)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040718-356 zgc:92275 "zgc:92275" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9MBA1 | CAO_ARATH | 1, ., 1, 4, ., 1, 3, ., 1, 2, 2 | 0.7537 | 0.9905 | 0.9757 | yes | no |
| Q8S7E1 | CAO_ORYSJ | 1, ., 1, 4, ., 1, 3, ., 1, 2, 2 | 0.7565 | 0.9848 | 0.9611 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.13.12 | 0.983 |
| 3rd Layer | 1.13.12.14 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 528 | |||
| PLN02281 | 536 | PLN02281, PLN02281, chlorophyllide a oxygenase | 0.0 | |
| cd04337 | 129 | cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o | 9e-76 | |
| PLN00095 | 394 | PLN00095, PLN00095, chlorophyllide a oxygenase; Pr | 4e-60 | |
| COG4638 | 367 | COG4638, HcaE, Phenylpropionate dioxygenase and re | 2e-30 | |
| cd03469 | 118 | cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o | 2e-28 | |
| cd03479 | 144 | cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem | 1e-26 | |
| cd03532 | 116 | cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem | 5e-26 | |
| pfam08417 | 91 | pfam08417, PaO, Pheophorbide a oxygenase | 2e-22 | |
| cd04338 | 134 | cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L | 2e-20 | |
| pfam00355 | 99 | pfam00355, Rieske, Rieske [2Fe-2S] domain | 7e-17 | |
| cd03480 | 138 | cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron | 3e-16 | |
| cd03467 | 98 | cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster | 2e-15 | |
| cd03537 | 123 | cd03537, Rieske_RO_Alpha_PrnD, This alignment mode | 4e-13 | |
| cd03548 | 136 | cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-hem | 3e-12 | |
| PLN02518 | 539 | PLN02518, PLN02518, pheophorbide a oxygenase | 5e-12 | |
| cd03531 | 115 | cd03531, Rieske_RO_Alpha_KSH, The alignment model | 4e-10 | |
| cd03542 | 123 | cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iro | 2e-07 | |
| cd08878 | 196 | cd08878, RHO_alpha_C_DMO-like, C-terminal catalyti | 4e-07 | |
| COG2146 | 106 | COG2146, {NirD}, Ferredoxin subunits of nitrite re | 5e-07 | |
| cd03535 | 123 | cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron | 7e-07 | |
| cd03541 | 118 | cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron | 9e-07 | |
| cd03478 | 95 | cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f | 5e-06 | |
| cd00680 | 188 | cd00680, RHO_alpha_C, C-terminal catalytic domain | 2e-05 | |
| TIGR03229 | 433 | TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenas | 2e-05 | |
| cd03538 | 146 | cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme ir | 1e-04 | |
| cd03530 | 98 | cd03530, Rieske_NirD_small_Bacillus, Small subunit | 5e-04 | |
| cd03539 | 129 | cd03539, Rieske_RO_Alpha_S5H, This alignment model | 6e-04 | |
| TIGR03228 | 438 | TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxyge | 9e-04 | |
| cd03545 | 150 | cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-he | 9e-04 | |
| cd03528 | 98 | cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro | 0.001 | |
| cd03472 | 128 | cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-hem | 0.003 |
| >gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase | Back alignment and domain information |
|---|
Score = 839 bits (2168), Expect = 0.0
Identities = 401/531 (75%), Positives = 460/531 (86%), Gaps = 9/531 (1%)
Query: 3 AIATAAALSLPISL--YRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
A+ + +ALSLPIS R + ++ KK V+G FRVFA+FG+E GLV+KKS W LFDVEDP
Sbjct: 4 AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63
Query: 61 RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
RSK P KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct: 64 RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123
Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL R + D+ +
Sbjct: 124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183
Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM-------E 233
S + S LD K KSLNVSGPV PY+ LKNFW+PVAF+ DLK DTM +
Sbjct: 184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243
Query: 234 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 293
PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L
Sbjct: 244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303
Query: 294 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 353
VKIKSLPC EQEGMIWIWPGDEPP +P L PPSGF IHAE+VM+LP+EHGLLLDNLL
Sbjct: 304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363
Query: 354 DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 413
DLAHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLSTIGISKP
Sbjct: 364 DLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKP 423
Query: 414 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV 473
GKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSLDFA +LK++PFM++LWRHFAEQV
Sbjct: 424 GKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQV 483
Query: 474 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 524
LNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRLWR+A+++G +LPF
Sbjct: 484 LNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534
|
Length = 536 |
| >gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|219832 pfam08417, PaO, Pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain | Back alignment and domain information |
|---|
| >gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|176887 cd08878, RHO_alpha_C_DMO-like, C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239614 cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
| >gnl|CDD|176852 cd00680, RHO_alpha_C, C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >gnl|CDD|132273 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >gnl|CDD|239612 cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >gnl|CDD|239613 cd03539, Rieske_RO_Alpha_S5H, This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
| >gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >gnl|CDD|239616 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
| >gnl|CDD|239554 cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| PLN02281 | 536 | chlorophyllide a oxygenase | 100.0 | |
| PLN02518 | 539 | pheophorbide a oxygenase | 100.0 | |
| PLN00095 | 394 | chlorophyllide a oxygenase; Provisional | 100.0 | |
| COG4638 | 367 | HcaE Phenylpropionate dioxygenase and related ring | 100.0 | |
| TIGR03229 | 433 | benzo_1_2_benA benzoate 1,2-dioxygenase, large sub | 100.0 | |
| TIGR03228 | 438 | anthran_1_2_A anthranilate 1,2-dioxygenase, large | 100.0 | |
| cd04337 | 129 | Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) | 99.95 | |
| cd03537 | 123 | Rieske_RO_Alpha_PrnD This alignment model represen | 99.95 | |
| cd04338 | 134 | Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate | 99.95 | |
| cd03479 | 144 | Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy | 99.95 | |
| cd03545 | 150 | Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox | 99.94 | |
| cd03480 | 138 | Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase | 99.93 | |
| cd03531 | 115 | Rieske_RO_Alpha_KSH The alignment model represents | 99.93 | |
| cd03532 | 116 | Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy | 99.93 | |
| cd03539 | 129 | Rieske_RO_Alpha_S5H This alignment model represent | 99.92 | |
| cd03538 | 146 | Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena | 99.92 | |
| cd03548 | 136 | Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy | 99.92 | |
| cd03541 | 118 | Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase | 99.92 | |
| cd03472 | 128 | Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy | 99.92 | |
| cd03469 | 118 | Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( | 99.9 | |
| cd03535 | 123 | Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase | 99.9 | |
| cd03536 | 123 | Rieske_RO_Alpha_DTDO This alignment model represen | 99.9 | |
| cd03542 | 123 | Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas | 99.87 | |
| cd03528 | 98 | Rieske_RO_ferredoxin Rieske non-heme iron oxygenas | 99.86 | |
| cd03530 | 98 | Rieske_NirD_small_Bacillus Small subunit of nitrit | 99.86 | |
| cd03474 | 108 | Rieske_T4moC Toluene-4-monooxygenase effector prot | 99.86 | |
| TIGR02377 | 101 | MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE | 99.84 | |
| cd03529 | 103 | Rieske_NirD Assimilatory nitrite reductase (NirD) | 99.84 | |
| TIGR02378 | 105 | nirD_assim_sml nitrite reductase [NAD(P)H], small | 99.83 | |
| PRK09965 | 106 | 3-phenylpropionate dioxygenase ferredoxin subunit; | 99.83 | |
| cd03478 | 95 | Rieske_AIFL_N AIFL (apoptosis-inducing factor like | 99.82 | |
| PF00355 | 97 | Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 | 99.78 | |
| cd03467 | 98 | Rieske Rieske domain; a [2Fe-2S] cluster binding d | 99.75 | |
| PF13806 | 104 | Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A | 99.75 | |
| PRK09511 | 108 | nirD nitrite reductase small subunit; Provisional | 99.74 | |
| COG2146 | 106 | {NirD} Ferredoxin subunits of nitrite reductase an | 99.73 | |
| cd08878 | 196 | RHO_alpha_C_DMO-like C-terminal catalytic domain o | 99.73 | |
| cd03477 | 91 | Rieske_YhfW_C YhfW family, C-terminal Rieske domai | 99.71 | |
| cd00680 | 188 | RHO_alpha_C C-terminal catalytic domain of the oxy | 99.64 | |
| cd03471 | 126 | Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co | 99.62 | |
| cd03476 | 126 | Rieske_ArOX_small Small subunit of Arsenite oxidas | 99.61 | |
| cd08885 | 190 | RHO_alpha_C_1 C-terminal catalytic domain of the o | 99.57 | |
| cd08883 | 175 | RHO_alpha_C_CMO-like C-terminal catalytic domain o | 99.5 | |
| TIGR02694 | 129 | arsenite_ox_S arsenite oxidase, small subunit. Thi | 99.5 | |
| cd08887 | 185 | RHO_alpha_C_3 C-terminal catalytic domain of the o | 99.48 | |
| cd08884 | 205 | RHO_alpha_C_GbcA-like C-terminal catalytic domain | 99.45 | |
| cd08886 | 182 | RHO_alpha_C_2 C-terminal catalytic domain of the o | 99.44 | |
| cd03473 | 107 | Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha | 99.39 | |
| cd03470 | 126 | Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co | 99.38 | |
| PRK13474 | 178 | cytochrome b6-f complex iron-sulfur subunit; Provi | 99.29 | |
| PF00848 | 209 | Ring_hydroxyl_A: Ring hydroxylating alpha subunit | 99.29 | |
| TIGR01416 | 174 | Rieske_proteo ubiquinol-cytochrome c reductase, ir | 98.95 | |
| PF08417 | 92 | PaO: Pheophorbide a oxygenase; InterPro: IPR013626 | 98.89 | |
| cd03475 | 171 | Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma | 98.83 | |
| cd08882 | 243 | RHO_alpha_C_MupW-like C-terminal catalytic domain | 98.71 | |
| cd08880 | 222 | RHO_alpha_C_ahdA1c-like C-terminal catalytic domai | 98.71 | |
| cd08879 | 237 | RHO_alpha_C_AntDO-like C-terminal catalytic domain | 98.44 | |
| cd08881 | 206 | RHO_alpha_C_NDO-like C-terminal catalytic domain o | 98.33 | |
| COG0723 | 177 | QcrA Rieske Fe-S protein [Energy production and co | 98.24 | |
| PF11723 | 240 | Aromatic_hydrox: Homotrimeric ring hydroxylase; In | 97.93 | |
| TIGR03171 | 321 | soxL2 Rieske iron-sulfur protein SoxL2. This iron- | 97.87 | |
| KOG1671 | 210 | consensus Ubiquinol cytochrome c reductase, subuni | 97.05 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 94.1 | |
| PRK14127 | 109 | cell division protein GpsB; Provisional | 87.99 |
| >PLN02281 chlorophyllide a oxygenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-135 Score=1085.81 Aligned_cols=526 Identities=76% Similarity=1.298 Sum_probs=466.0
Q ss_pred Cc-chhhhhccccccccc--cccccccccccccceEEEEEecCCCccccccCcceeeeeecCCCCCCCccCCceechhhH
Q 009689 1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA 77 (528)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (528)
|| +++|+|+||||+||+ ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T PLN02281 1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA 80 (536)
T ss_pred CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence 77 499999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
|||+||||||||||||||+||||.||+||||||||||||+|||||||||||||||||+|||+|||+||||||++|+||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T PLN02281 81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH 160 (536)
T ss_pred HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccccCCCCCccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCCCe-----
Q 009689 158 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM----- 232 (528)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~~~----- 232 (528)
||+|+|+|||++++.+++.-.++.+++++.....+.++..+++++.+|+..|+...++|.||+||+++||+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~l 240 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIEC 240 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcCcchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEE
Confidence 999999999998887766544444455557788889999999999999999999999999999999999987632
Q ss_pred --eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecceEE
Q 009689 233 --EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW 310 (528)
Q Consensus 233 --~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G~Iw 310 (528)
++++|||+.+|+++|+.|+|||||++|+.|+++++.|+||||||+||.+|+|+.+|+.+..+.++++|||++++|+||
T Consensus 241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVw 320 (536)
T PLN02281 241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIW 320 (536)
T ss_pred CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999998765678899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCeeeeEEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCceeeeecCCCCCCcccc
Q 009689 311 IWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 390 (528)
Q Consensus 311 V~~~~~~p~~~lp~~~~~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~v~~~~~~~~~~g~~~ 390 (528)
||+++.++++.+|.+..+.+|.......+++++||++++||++|+||++|+|+++++..+..+..+....+...+.++|.
T Consensus 321 V~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~ 400 (536)
T PLN02281 321 IWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400 (536)
T ss_pred EEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCcccc
Confidence 99987655445666655456765555678999999999999999999999999999987666655554444444555665
Q ss_pred CCCcceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHH
Q 009689 391 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA 470 (528)
Q Consensus 391 ~~~~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~ 470 (528)
..+..++|.+||++...+++..+|...+........++..++.|||+++++||+||.+.+||.++.+..++...++.++.
T Consensus 401 ~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~ 480 (536)
T PLN02281 401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFA 480 (536)
T ss_pred cCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHHh
Confidence 54556889999999988888777765433333444567788999999999999999999998776434444445466778
Q ss_pred HHHHhhHHHHHHHHhhhccCCCCCCCCCCcCChHHHHHHHHHHHHHcCCCCCCCCC
Q 009689 471 EQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 526 (528)
Q Consensus 471 ~~V~~ED~~ile~qQ~~l~~g~~~~~l~~~aD~~~i~yRrwl~al~~g~~~~p~~~ 526 (528)
..+|.||+.|+|+||+++......+++++.+|+++++||||++++.++.+++||++
T Consensus 481 ~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf~~ 536 (536)
T PLN02281 481 EQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFSG 536 (536)
T ss_pred hHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHhhcccCCCCCCC
Confidence 89999999999999999988777888999999999999999999999999999985
|
|
| >PLN02518 pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >PLN00095 chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
| >cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
| >cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
| >cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) | Back alignment and domain information |
|---|
| >cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
| >cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
| >cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium | Back alignment and domain information |
|---|
| >TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit | Back alignment and domain information |
|---|
| >PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
| >cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
| >PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types | Back alignment and domain information |
|---|
| >cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A | Back alignment and domain information |
|---|
| >PRK09511 nirD nitrite reductase small subunit; Provisional | Back alignment and domain information |
|---|
| >COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain | Back alignment and domain information |
|---|
| >cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate | Back alignment and domain information |
|---|
| >cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >TIGR02694 arsenite_ox_S arsenite oxidase, small subunit | Back alignment and domain information |
|---|
| >cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols [] | Back alignment and domain information |
|---|
| >TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
| >PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO) | Back alignment and domain information |
|---|
| >cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp | Back alignment and domain information |
|---|
| >cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium | Back alignment and domain information |
|---|
| >TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 | Back alignment and domain information |
|---|
| >KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14127 cell division protein GpsB; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 528 | ||||
| 3gke_A | 349 | Crystal Structure Of Dicamba Monooxygenase Length = | 8e-16 | ||
| 3gkq_A | 389 | Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr | 3e-07 | ||
| 3n0q_A | 409 | Crystal Structure Of A Putative Aromatic-Ring Hydro | 3e-06 | ||
| 3vca_A | 412 | Quaternary Ammonium Oxidative Demethylation: X-Ray | 6e-06 | ||
| 3gcf_A | 394 | Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr | 1e-05 | ||
| 1ww9_A | 392 | Crystal Structure Of The Terminal Oxygenase Compone | 3e-05 | ||
| 2zyl_A | 386 | Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl | 4e-05 |
| >pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349 | Back alignment and structure |
|
| >pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Novosphingobium Sp. Ka1 Length = 389 | Back alignment and structure |
| >pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409 | Back alignment and structure |
| >pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412 | Back alignment and structure |
| >pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394 | Back alignment and structure |
| >pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase System Catalyzing The Novel Angular Dioxygenation For Carbazole And Dioxin Length = 392 | Back alignment and structure |
| >pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 | Back alignment and structure |
|---|
Score = 255 bits (652), Expect = 1e-80
Identities = 76/354 (21%), Positives = 131/354 (37%), Gaps = 61/354 (17%)
Query: 214 LKNFWFPVAFSTDLKDDTM------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 267
++N W+ A +L + + P ++R DG+ + + C HR PL G + G
Sbjct: 5 VRNAWYVAALPEELSEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNG 64
Query: 268 RIQCPYHGWEYSTDGKCEKMPSTQ---LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 324
+QCPYHG E+ G+C P ++ ++S P E++ +IWIWPGD P
Sbjct: 65 HLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALAD--PG 122
Query: 325 LLPPSGFEIHAE-----IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA------------ 367
+P G + + + LL+DNL+DL HA + H +
Sbjct: 123 AIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQTDAFDRLEREVI 182
Query: 368 -------------KGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPG 414
G + KFL A+ W D+ + +L+ I ++ G
Sbjct: 183 VGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAW----NDIRWNKVSAMLNFIAVAPEG 238
Query: 415 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQ-V 473
++ + H H+ P + + S +F P M + R + Q +
Sbjct: 239 T-----PKEQSIHSRGTHILTPETEASCHYFFGSSRNFG---IDDPEMDGVLRSWQAQAL 290
Query: 474 LNEDLRLVLGQQERMNNGANVWN---LPVGYDKLGVRYRLWRDAL---EKGAKQ 521
+ ED +V + R + D+ VR + L E +
Sbjct: 291 VKEDKVVVEAIERRRAY-VEANGIRPAMLSCDEAAVRVSREIEKLEQLEAARLE 343
|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 | Back alignment and structure |
|---|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 | Back alignment and structure |
|---|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 | Back alignment and structure |
|---|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454 | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447 | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470 | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457 | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412 | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 | Back alignment and structure |
|---|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409 | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460 | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| 3gke_A | 349 | DDMC; rieske cluster, non-heme mononuclear iron, o | 100.0 | |
| 3n0q_A | 409 | Putative aromatic-ring hydroxylating dioxygenase; | 100.0 | |
| 3vca_A | 412 | Ring-hydroxylating dioxygenase; rieske-type, monon | 100.0 | |
| 2zyl_A | 386 | Possible oxidoreductase; KSHA, cholesterol, rieske | 100.0 | |
| 1z01_A | 446 | 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen | 100.0 | |
| 2de6_A | 392 | Terminal oxygenase component of carbazole; electro | 100.0 | |
| 3gkq_A | 389 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 3gcf_A | 394 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 2bmo_A | 447 | Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni | 100.0 | |
| 2gbw_A | 454 | Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy | 100.0 | |
| 2b1x_A | 470 | Naphthalene dioxygenase large subunit; rieske non- | 100.0 | |
| 3gzx_A | 457 | Biphenyl dioxygenase subunit alpha; rieskie, non-h | 100.0 | |
| 1uli_A | 460 | Biphenyl dioxygenase large subunit; alpha3 BETA3 h | 100.0 | |
| 2qpz_A | 103 | Naphthalene 1,2-dioxygenase system ferredoxin subu | 99.9 | |
| 2i7f_A | 108 | Ferredoxin component of dioxygenase; rieske ferred | 99.9 | |
| 1fqt_A | 112 | Rieske-type ferredoxin of biphenyl dioxygenase; 2F | 99.9 | |
| 2de6_D | 115 | Ferredoxin component of carbazole; electron transf | 99.9 | |
| 1vm9_A | 111 | Toluene-4-monooxygenase system protein C; structur | 99.9 | |
| 3dqy_A | 106 | Toluene 1,2-dioxygenase system ferredoxin subunit; | 99.89 | |
| 2jo6_A | 113 | Nitrite reductase [NAD(P)H] small subunit; all bet | 99.89 | |
| 3c0d_A | 119 | Putative nitrite reductase NADPH (small subunit) o | 99.89 | |
| 2jza_A | 130 | Nitrite reductase [NAD(P)H] small subunit; ISP dom | 99.89 | |
| 3gce_A | 121 | Ferredoxin component of carbazole 1,9A- dioxygenas | 99.88 | |
| 4aiv_A | 119 | Probable nitrite reductase [NAD(P)H] small subuni; | 99.88 | |
| 3d89_A | 157 | Rieske domain-containing protein; CAsp target, rie | 99.88 | |
| 1rfs_A | 139 | Rieske protein; iron-sulfur protein, electron tran | 99.77 | |
| 1rie_A | 129 | Rieske iron-sulfur protein; oxidoreductase, cytoch | 99.77 | |
| 4aay_B | 175 | AROB; oxidoreductase, rieske, iron sulfur, molybdo | 99.73 | |
| 1g8k_B | 133 | Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, | 99.73 | |
| 3azc_A | 133 | Cytochrome B6-F complex iron-sulfur subunit; riesk | 99.56 | |
| 1nyk_A | 165 | Rieske iron-sulfur protein; beta barrel, iron sulf | 99.62 | |
| 3cx5_E | 185 | Cytochrome B-C1 complex subunit rieske, mitochondr | 99.61 | |
| 2qjy_C | 187 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.61 | |
| 1pp9_E | 196 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU | 99.6 | |
| 2nwf_A | 141 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.59 | |
| 1vf5_D | 179 | Rieske iron-sulfur protein; photosynthesis, membra | 99.57 | |
| 1jm1_A | 204 | Rieske iron-sulfur protein SOXF; electron transpor | 99.52 |
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-50 Score=417.95 Aligned_cols=293 Identities=25% Similarity=0.453 Sum_probs=224.2
Q ss_pred ccccCceEEEeecCCCCCCC-e------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCc
Q 009689 212 TRLKNFWFPVAFSTDLKDDT-M------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 284 (528)
Q Consensus 212 ~~~~~~W~~v~~s~eL~~~~-~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~ 284 (528)
+.+++.||+||+++|| ++. + ++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.||+|
T Consensus 3 ~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~~ 81 (349)
T 3gke_A 3 TFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQC 81 (349)
T ss_dssp CCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCCE
T ss_pred cccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCCc
Confidence 4678999999999999 553 2 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC-cc--cccccccccceeeecceEEEcCCCCC-CC-CCCCCCC--CCCCCeeeeEEEEEEecchhhHhhhcCCCCC
Q 009689 285 EKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLAH 357 (528)
Q Consensus 285 ~~iP~-~~--~~~~~l~~~pv~e~~G~IwV~~~~~~-p~-~~lp~~~--~~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H 357 (528)
+.+|+ .. ....+|++|||++++|+||||+++++ +. ..+|++. ..++|... ...++++||||+++||++|+||
T Consensus 82 ~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H 160 (349)
T 3gke_A 82 VHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLGH 160 (349)
T ss_dssp EECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGGG
T ss_pred cccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhcccccc
Confidence 99995 21 13578999999999999999998754 21 1244442 23567655 4567899999999999999999
Q ss_pred CCCCCccccccCCC--CCceeeeecCCCCC-----------Ccccc------CCC----cceEEcCceeEEEEeeecCCC
Q 009689 358 APFTHTSTFAKGWS--VPSLVKFLTPASGL-----------QGYWD------PYP----IDMEFRPPCMVLSTIGISKPG 414 (528)
Q Consensus 358 ~~~vH~~t~~~~~~--vp~~v~~~~~~~~~-----------~g~~~------~~~----~~~~f~~P~~vl~~~g~~~pg 414 (528)
++++|+++++.... ++..++. + ..++ ..++. ... ..++|.+|+++...+++..+|
T Consensus 161 ~~~~H~~~~~~~~~~~~~~~v~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~g 238 (349)
T 3gke_A 161 AQYVHRANAQTDAFDRLEREVIV-G-DGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPEG 238 (349)
T ss_dssp HHHHTHHHHCCTTGGGCEEEEEE-C-SSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred chhccchhhcCccccCCCCEEEE-c-CCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccCC
Confidence 99999999986532 1211111 0 0000 00110 001 347888999987777776655
Q ss_pred CcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHHHHHH-hhHHHHHHHHhhhccCCC-
Q 009689 415 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA- 492 (528)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~-~ED~~ile~qQ~~l~~g~- 492 (528)
.. .....++++++.|+|+++++|+++|.+++||..++. .+...+..+..+|| +||+.|||+||+++....
T Consensus 239 ~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~---~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~~ 310 (349)
T 3gke_A 239 TP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDP---EMDGVLRSWQAQALVKEDKVVVEAIERRRAYVEA 310 (349)
T ss_dssp SC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCH---HHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHHH
T ss_pred CC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCch---hhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCCc
Confidence 41 122345677899999999999999999999875432 23345566788899 999999999999987631
Q ss_pred -CCCCCCCcCChHHHHHHHHHHHHH
Q 009689 493 -NVWNLPVGYDKLGVRYRLWRDALE 516 (528)
Q Consensus 493 -~~~~l~~~aD~~~i~yRrwl~al~ 516 (528)
...++++.+|+++++||||++++.
T Consensus 311 ~~~~~~~~~~D~~~v~~Rr~l~~l~ 335 (349)
T 3gke_A 311 NGIRPAMLSCDEAAVRVSREIEKLE 335 (349)
T ss_dssp TTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHH
Confidence 234589999999999999998764
|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A | Back alignment and structure |
|---|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* | Back alignment and structure |
|---|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* | Back alignment and structure |
|---|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} | Back alignment and structure |
|---|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} | Back alignment and structure |
|---|
| >1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* | Back alignment and structure |
|---|
| >1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 | Back alignment and structure |
|---|
| >4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} | Back alignment and structure |
|---|
| >1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* | Back alignment and structure |
|---|
| >3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A | Back alignment and structure |
|---|
| >3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* | Back alignment and structure |
|---|
| >2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* | Back alignment and structure |
|---|
| >1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... | Back alignment and structure |
|---|
| >2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A | Back alignment and structure |
|---|
| >1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* | Back alignment and structure |
|---|
| >1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 528 | ||||
| d1z01a1 | 148 | b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m | 2e-22 | |
| d2de6a1 | 142 | b.33.1.2 (A:1-142) Terminal oxygenase component of | 2e-21 | |
| d1rfsa_ | 127 | b.33.1.1 (A:) ISP subunit from chloroplast cytochr | 1e-16 | |
| d1vm9a_ | 109 | b.33.1.1 (A:) Toluene-4-monooxygenase system prote | 2e-16 | |
| d1fqta_ | 109 | b.33.1.1 (A:) Rieske-type ferredoxin associated wi | 1e-14 | |
| d2e74d1 | 134 | b.33.1.1 (D:46-179) ISP subunit from the cytochrom | 2e-12 | |
| d2jzaa1 | 122 | b.33.1.3 (A:1-122) NADH-nitrite reductase small su | 5e-11 | |
| d1g8kb_ | 133 | b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc | 2e-10 | |
| d2jo6a1 | 108 | b.33.1.3 (A:1-108) NADH-nitrite reductase small su | 7e-10 | |
| d1ulia1 | 154 | b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub | 8e-10 | |
| d1nyka_ | 156 | b.33.1.1 (A:) Soluble Rieske protein {Thermus ther | 1e-09 | |
| d3c0da1 | 108 | b.33.1.3 (A:4-111) NADH-nitrite reductase small su | 3e-09 | |
| d2bmoa1 | 150 | b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha | 2e-07 | |
| d2b1xa1 | 162 | b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp | 6e-06 | |
| d1jm1a_ | 202 | b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S | 0.002 | |
| d1riea_ | 127 | b.33.1.1 (A:) ISP subunit of the mitochondrial cyt | 0.003 |
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Score = 91.7 bits (227), Expect = 2e-22
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 17/133 (12%)
Query: 208 QPY---NTRLKNFWFPVAFSTDLKDDTMEPW------VIFRGKDGIPGCVQNTCAHRACP 258
QPY N W+P F+ +L++D ++ ++ R +G +++ C HR
Sbjct: 16 QPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRRVNGKVFALKDQCLHRGVR 75
Query: 259 LHLG--SVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-----LRNVKIKSLPCFEQEGMIWI 311
L + I C YHG+ + + + + + P E GMI++
Sbjct: 76 LSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFV 135
Query: 312 WPG-DEPPTATIP 323
+ D+ P +P
Sbjct: 136 FVREDDFPDEDVP 148
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 | Back information, alignment and structure |
|---|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 | Back information, alignment and structure |
|---|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 | Back information, alignment and structure |
|---|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 | Back information, alignment and structure |
|---|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134 | Back information, alignment and structure |
|---|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122 | Back information, alignment and structure |
|---|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 | Back information, alignment and structure |
|---|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154 | Back information, alignment and structure |
|---|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Length = 108 | Back information, alignment and structure |
|---|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150 | Back information, alignment and structure |
|---|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162 | Back information, alignment and structure |
|---|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202 | Back information, alignment and structure |
|---|
| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| d1ulia1 | 154 | Biphenyl dioxygenase large subunit BphA1, N-termin | 99.96 | |
| d2bmoa1 | 150 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 99.96 | |
| d2b1xa1 | 162 | Naphthalene 1,2-dioxygenase alpha subunit, N-domai | 99.96 | |
| d2de6a1 | 142 | Terminal oxygenase component of carbazole CarAa {J | 99.94 | |
| d1z01a1 | 148 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.93 | |
| d1vm9a_ | 109 | Toluene-4-monooxygenase system protein C, TmoC {Ps | 99.88 | |
| d2jzaa1 | 122 | NADH-nitrite reductase small subunit NirD {Erwinia | 99.87 | |
| d2jo6a1 | 108 | NADH-nitrite reductase small subunit NirD {Escheri | 99.85 | |
| d1fqta_ | 109 | Rieske-type ferredoxin associated with biphenyl di | 99.83 | |
| d3c0da1 | 108 | NADH-nitrite reductase small subunit NirD {Vibrio | 99.82 | |
| d1rfsa_ | 127 | ISP subunit from chloroplast cytochrome bf complex | 99.69 | |
| d2e74d1 | 134 | ISP subunit from the cytochrome b6f complex, solub | 99.64 | |
| d1g8kb_ | 133 | Arsenite oxidase Rieske subunit {Alcaligenes faeca | 99.59 | |
| d1nyka_ | 156 | Soluble Rieske protein {Thermus thermophilus [TaxI | 99.42 | |
| d1z01a2 | 279 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.15 | |
| d3cx5e1 | 129 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.77 | |
| d1jm1a_ | 202 | Rieske protein II (SoxF) {Archaeon Sulfolobus acid | 98.71 | |
| d1riea_ | 127 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.69 | |
| d2b1xa2 | 279 | Naphthalene 1,2-dioxygenase alpha subunit, C-domai | 97.58 | |
| d2bmoa2 | 287 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 97.47 | |
| d2de6a2 | 242 | Terminal oxygenase component of carbazole CarAa {J | 97.0 | |
| d1wqla2 | 279 | Large subunit of cumene dioxygenase cumA1 {Pseudom | 96.64 | |
| d1ulia2 | 281 | Biphenyl dioxygenase large subunit BphA1, C-termin | 95.25 |
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]
Probab=99.96 E-value=1.3e-29 Score=233.01 Aligned_cols=121 Identities=19% Similarity=0.332 Sum_probs=106.1
Q ss_pred cCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCCC-e-------eeEEEEEccCCcEEEEe
Q 009689 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDT-M-------EPWVIFRGKDGIPGCVQ 249 (528)
Q Consensus 178 ~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~~-~-------~~ivl~R~~~G~v~A~~ 249 (528)
.++...+|+++|++|+++||++ .|++||+++||++.+ . ++++|+|+++|+++||.
T Consensus 17 l~~~~Y~~~~~~~~E~~~if~~-----------------~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~g~i~af~ 79 (154)
T d1ulia1 17 LDPRIYTDEALYEQELERIFGR-----------------SWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFL 79 (154)
T ss_dssp ECGGGGTCHHHHHHHHHHTTTT-----------------SCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHhcc-----------------CCEEEEEhhhCCCCcceeeeecCCcceeEEeecccceeeee
Confidence 6778899999999999999864 566899999998752 1 89999999999999999
Q ss_pred ccCCCCCCCCCCCC-ccceeEeccCCCeeEcCCCCcccCCCccc-------ccccccccceeeecceEEEcCCC
Q 009689 250 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGD 315 (528)
Q Consensus 250 n~CpHRga~Ls~G~-v~~~~i~CPYHGW~fd~dG~~~~iP~~~~-------~~~~l~~~pv~e~~G~IwV~~~~ 315 (528)
|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|..+. .+.+|.+++|.+++|+||||+++
T Consensus 80 N~C~HRG~~L~~~~~g~~~~l~CpYHgW~f~~~G~~~~iP~~~~~~~~~~~~~~~L~~~~v~~~~G~Ifv~~d~ 153 (154)
T d1ulia1 80 NQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDA 153 (154)
T ss_dssp SCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCT
T ss_pred cccccCCceeeecCCCccceEEeeeceeEEecCCccccCCcccccCCCCChHHCCCeEEeEEEECCEEEEEeCC
Confidence 99999999999855 57788999999999999999999997532 34678999999999999999964
|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
|---|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
|---|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} | Back information, alignment and structure |
|---|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} | Back information, alignment and structure |
|---|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
|---|
| >d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
|---|
| >d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
| >d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
| >d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
|---|