Citrus Sinensis ID: 009709

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MLMGTAINAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVTPFWIDER
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccHHHHHHccccccccHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHcccccccccccccccccccEEcccccccccccEEEccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHcccccccHHcccccccccccEEEEccHHHHcccccHHHHHHHHHHHHHHHHcccEEEccccccccHHHccccccccHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHcccccccHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccEEcccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHccEEEEEcHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccHHHHHHHccccccccHHHHHHHHcccEEEEEEcccHHHHccccccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEcccccccccccccccccccccHHHHHcccccccEEEEEcHHHHccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEEccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEccccccEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccHHccc
MLMGTAINAATSISFSITTVLTLLLFipingqdqFTIIEATIDEIQTAfdqnkltsTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFlgelhgipvllkdtfatkdklntsagsyALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSfralgkipngwcaragqaknpylpsgdpcgsssgsaISVAANMVTVSLgsethgsilcpadrnsvvglkptvgltsragvipvlpqhdtigaiSRTVSDAVYLLDVIVGfdsrdyeatseaaryipvggykqflnenglkgkrLGVVRNLFSNALNGSTVITAFENHLNTLRQSgativddlemanvdvisnpgksgeLTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQnnadmektkeygqgtfisaektsgfgeKERKAVELMEKLSQDGIEKLMTENEldalvtpgtrvipvlalggypgitvpagyegnqmpfgicfgglkgtePKLIEIAYAFEQatmirrppfvtpfwider
MLMGTAINAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGrrflgelhgipvLLKDTFATKDKLNtsagsyalvgsvvprdATVVERLRDAGAVILgkasltewySFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEaaryipvggyKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTfisaektsgfgeKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFeqatmirrppfvtpfwider
MLMGTAINAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLpsgdpcgsssgsaisvaaNMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVTPFWIDER
*****AINAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIE**********************RFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQ*******************ISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQ**********************************************LMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVTPFWI***
*********ATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVT*******
MLMGTAINAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVTPFWIDER
MLMGTAINAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSS********ANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVTP******
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLMGTAINAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVTPFWIDER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query528 2.2.26 [Sep-21-2011]
Q9URY4583 Putative amidase C869.01 yes no 0.920 0.833 0.380 1e-77
B0JSX3483 Glutamyl-tRNA(Gln) amidot yes no 0.842 0.921 0.307 2e-39
A0LP22486 Glutamyl-tRNA(Gln) amidot yes no 0.821 0.893 0.316 4e-37
Q3Z6V3486 Glutamyl-tRNA(Gln) amidot yes no 0.837 0.909 0.284 4e-37
A5GTM0485 Glutamyl-tRNA(Gln) amidot yes no 0.848 0.923 0.304 7e-37
Q3ZYM5486 Glutamyl-tRNA(Gln) amidot yes no 0.837 0.909 0.281 2e-36
A5FQ07486 Glutamyl-tRNA(Gln) amidot yes no 0.831 0.903 0.279 5e-36
Q6MRL7490 Glutamyl-tRNA(Gln) amidot yes no 0.833 0.897 0.285 7e-36
P73558483 Glutamyl-tRNA(Gln) amidot N/A no 0.816 0.892 0.318 1e-35
Q97FQ7485 Glutamyl-tRNA(Gln) amidot yes no 0.801 0.872 0.270 2e-35
>sp|Q9URY4|YI01_SCHPO Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1 Back     alignment and function desciption
 Score =  290 bits (743), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 290/521 (55%), Gaps = 35/521 (6%)

Query: 27  IPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARS 86
            P+      T+ +ATID++Q   +   LTST +V  Y+ +   +NP +  ++++NPD  +
Sbjct: 56  FPMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLT 115

Query: 87  QAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVE 146
            A + D  R     R   G LHGIP ++KD FATKDK++T+AGSYAL+GS+VPRDA VV+
Sbjct: 116 IASELDDERANGIIR---GPLHGIPFIVKDNFATKDKMDTTAGSYALLGSIVPRDAYVVK 172

Query: 147 RLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVA 206
           +LR+AGAV+ G A+L+EW   R+      G+ AR GQ++ P+  + +P GSSSGSAISVA
Sbjct: 173 QLREAGAVLFGHATLSEWADMRS-NDYSEGYSARGGQSRCPFNLTVNPGGSSSGSAISVA 231

Query: 207 ANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDA 266
           +NM+  +LG+ET GSI+ PA RN VVGLKPTVGLTSR GVIP     DT G I+RTV DA
Sbjct: 232 SNMIAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTGPIARTVRDA 291

Query: 267 VYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFL-NENGLKGKRLGV-VRNLFSNALNGS 324
           VY+   + G D  D    ++  +    G Y +FL N+  L+G R G+  + L+ NA   +
Sbjct: 292 VYVFQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGLPWKRLWQNA--KA 349

Query: 325 TVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGEL--------TAMLAGFKIAL 376
             I      +  + ++GA + ++    N+DVISN G + EL        T +   F   +
Sbjct: 350 DEIDRLLEVVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTVVKVDFYNNI 409

Query: 377 NEYLQELVSSPVRSLADVIAFNQNNADMEKTK-------EYGQGTFISAEKTSGF-GEKE 428
             YL E+ ++ + SL D++ +N      E  K         GQ  F+++ +  G   E  
Sbjct: 410 KSYLSEVKNTEIHSLEDIVEYNNKYMGTEGGKPNIVPAFSSGQDGFLASLEWGGVKNETY 469

Query: 429 RKAVELMEKLSQD-GIEKLMTENE--------LDALVTP-GTRV-IPVLALGGYPGITVP 477
            +AVE + + SQD GI+  +   +        L+ L+ P GT +     A  GYP IT+P
Sbjct: 470 WQAVEYVRRTSQDEGIDYALNYTDPKTNDSFILNGLLVPSGTSITYQQAAKAGYPMITLP 529

Query: 478 AGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPP 518
            G + N  PFG+        EP+LI+   A E     +  P
Sbjct: 530 IGVKTNGRPFGLGIMHSAWQEPQLIKYGSAIEDLLQYKAKP 570

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|B0JSX3|GATA_MICAN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A0LP22|GATA_SYNFM Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3Z6V3|GATA_DEHE1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A5GTM0|GATA_SYNR3 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain RCC307) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3ZYM5|GATA_DEHSC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A5FQ07|GATA_DEHSB Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q6MRL7|GATA_BDEBA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|P73558|GATA_SYNY3 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q97FQ7|GATA1_CLOAB Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gatA1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
224105227527 predicted protein [Populus trichocarpa] 0.937 0.939 0.732 0.0
449489774527 PREDICTED: LOW QUALITY PROTEIN: putative 0.948 0.950 0.678 0.0
449458664527 PREDICTED: putative amidase C869.01-like 0.950 0.952 0.675 0.0
224078133521 predicted protein [Populus trichocarpa] 0.962 0.975 0.656 0.0
118488348517 unknown [Populus trichocarpa] 0.954 0.974 0.654 0.0
224105229497 predicted protein [Populus trichocarpa] 0.916 0.973 0.672 0.0
449454185513 PREDICTED: putative amidase C869.01-like 0.935 0.962 0.665 0.0
297744648520 unnamed protein product [Vitis vinifera] 0.937 0.951 0.66 0.0
297744647 988 unnamed protein product [Vitis vinifera] 0.937 0.501 0.679 0.0
359474867517 PREDICTED: putative amidase C869.01-like 0.937 0.957 0.66 0.0
>gi|224105227|ref|XP_002313733.1| predicted protein [Populus trichocarpa] gi|222850141|gb|EEE87688.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/497 (73%), Positives = 425/497 (85%), Gaps = 2/497 (0%)

Query: 29  INGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQA 88
           +NGQ  FTI E+TI+EIQ AF +NKLTSTQLV+FYITQI+TLNP L S+IEVNPDAR QA
Sbjct: 24  VNGQ-HFTIPESTIEEIQQAFAENKLTSTQLVDFYITQIKTLNPLLHSIIEVNPDARDQA 82

Query: 89  EKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERL 148
           + AD  R+ NQGRR LG+LHGIPVLLKDT  TKDKLNTSAGSYALVGSVV RDA+VVE+L
Sbjct: 83  KNADEERRENQGRRSLGDLHGIPVLLKDTIGTKDKLNTSAGSYALVGSVVARDASVVEKL 142

Query: 149 RDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAAN 208
           R AGAVI+GKASL+EWY FR+L  +PNGWCAR+GQ  NPYL +GDPCGSSSGSAISVAAN
Sbjct: 143 RKAGAVIMGKASLSEWYKFRSLSHVPNGWCARSGQGVNPYLVTGDPCGSSSGSAISVAAN 202

Query: 209 MVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVY 268
           MV VSLG+ETH SI+CP+D NSVVGLKPTVGLTSRAGVIPV P  DTIG ++RTVSDAV 
Sbjct: 203 MVAVSLGTETHSSIICPSDHNSVVGLKPTVGLTSRAGVIPVAPSLDTIGPVTRTVSDAVR 262

Query: 269 LLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVIT 328
           +LDVIVGFD RDYEAT  AA++IP GGYKQFLN NGLKGK LG+VRN F  +LN S +  
Sbjct: 263 VLDVIVGFDPRDYEATQRAAKFIPAGGYKQFLNPNGLKGKILGIVRNPFLKSLNES-IFP 321

Query: 329 AFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPV 388
            FE+HLNTLR+ GAT+VD+LE+AN++ I +P +SGELT M+A FK++LN+YL++L++SPV
Sbjct: 322 IFEHHLNTLRERGATVVDNLEIANINTIVDPSRSGELTLMMAEFKLSLNDYLKDLITSPV 381

Query: 389 RSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMT 448
            SLAD+IAFN+NN D+EK KEYGQ TFI+AEKT+G GEKERKA+ELMEKLSQ+G EKLM 
Sbjct: 382 WSLADIIAFNKNNPDLEKNKEYGQDTFIAAEKTNGIGEKERKAIELMEKLSQNGFEKLMM 441

Query: 449 ENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAF 508
           EN LDA+VTPG+    VLA+GGYPGITVPAGY+ N MPFGICFGGLK TE KLIEIAY F
Sbjct: 442 ENNLDAMVTPGSGATSVLAIGGYPGITVPAGYDINGMPFGICFGGLKDTEIKLIEIAYDF 501

Query: 509 EQATMIRRPPFVTPFWI 525
           EQATM+R+PP +  F +
Sbjct: 502 EQATMMRKPPLLESFQM 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449489774|ref|XP_004158411.1| PREDICTED: LOW QUALITY PROTEIN: putative amidase C869.01-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449458664|ref|XP_004147067.1| PREDICTED: putative amidase C869.01-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224078133|ref|XP_002305492.1| predicted protein [Populus trichocarpa] gi|222848456|gb|EEE86003.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488348|gb|ABK95992.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105229|ref|XP_002313734.1| predicted protein [Populus trichocarpa] gi|222850142|gb|EEE87689.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454185|ref|XP_004144836.1| PREDICTED: putative amidase C869.01-like [Cucumis sativus] gi|449510416|ref|XP_004163657.1| PREDICTED: putative amidase C869.01-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297744648|emb|CBI37910.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744647|emb|CBI37909.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474867|ref|XP_002277377.2| PREDICTED: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query528
TAIR|locus:2116890466 AT4G34880 "AT4G34880" [Arabido 0.530 0.600 0.580 2.1e-126
POMBASE|SPAC869.01583 SPAC869.01 "amidase (predicted 0.772 0.699 0.370 1.8e-74
UNIPROTKB|Q81RH4491 BAS1925 "Amidase family protei 0.878 0.945 0.387 8.9e-70
TIGR_CMR|BA_2072491 BA_2072 "amidase family protei 0.878 0.945 0.387 8.9e-70
UNIPROTKB|G4MP85559 MGG_02188 "Glutamyl-tRNA(Gln) 0.842 0.796 0.337 1.6e-65
UNIPROTKB|Q81RW6536 BAS1782 "Amidase family protei 0.875 0.861 0.318 2e-63
TIGR_CMR|BA_1921536 BA_1921 "amidase family protei 0.875 0.861 0.318 2e-63
UNIPROTKB|G4MQU3555 MGG_04756 "Glutamyl-tRNA(Gln) 0.886 0.843 0.338 1.2e-60
UNIPROTKB|Q0C2V5506 HNE_1220 "Amidase family prote 0.880 0.918 0.303 6.5e-51
UNIPROTKB|Q2KG62566 MGCH7_ch7g473 "Putative unchar 0.846 0.789 0.296 3e-37
TAIR|locus:2116890 AT4G34880 "AT4G34880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 845 (302.5 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
 Identities = 169/291 (58%), Positives = 228/291 (78%)

Query:   228 RNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEA 287
             +NSVVG+KP+VGLTSRAGV+P+  + D+IG I RTVSDAV+LLD IVG+D  D EAT  A
Sbjct:   183 QNSVVGIKPSVGLTSRAGVVPISLRQDSIGPICRTVSDAVHLLDAIVGYDPLD-EATKTA 241

Query:   288 ARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDD 347
             + +IP GGYKQFL  +GLKGKRLG+V       +  S+++   ++H+ TLR+ GA ++++
Sbjct:   242 SEFIPEGGYKQFLTTSGLKGKRLGIV-------MKHSSLL---DHHIKTLRREGAIVINN 291

Query:   348 LEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKT 407
             L + N++VI     SGE  A+LA FK++LN YL+ELV SPVRSLADVIA+N+  A+ EK 
Sbjct:   292 LTIPNIEVIVGGTDSGEEIALLAEFKMSLNAYLKELVKSPVRSLADVIAYNEEFAEQEKV 351

Query:   408 KEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLA 467
             KE+GQ  F++AE TSG GEKE+ A++ M++LS++GIEKL+ EN+LDA+VT G+ +  VLA
Sbjct:   352 KEWGQEVFLTAEATSGMGEKEKTALQKMKELSRNGIEKLIEENKLDAIVTLGSDLSSVLA 411

Query:   468 LGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPP 518
             +GGYPGI VPAGY+   +P+GI FGGL+ +EPKLIEIA+AFEQAT+IR+PP
Sbjct:   412 IGGYPGINVPAGYDSGGVPYGISFGGLRFSEPKLIEIAFAFEQATLIRKPP 462
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
POMBASE|SPAC869.01 SPAC869.01 "amidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RH4 BAS1925 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2072 BA_2072 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP85 MGG_02188 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RW6 BAS1782 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1921 BA_1921 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQU3 MGG_04756 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C2V5 HNE_1220 "Amidase family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KG62 MGCH7_ch7g473 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5GTM0GATA_SYNR36, ., 3, ., 5, ., -0.30420.84840.9237yesno
A0LP22GATA_SYNFM6, ., 3, ., 5, ., -0.31690.82190.8930yesno
Q5N0K5GATA_SYNP66, ., 3, ., 5, ., -0.30780.84090.9269yesno
Q31LC2GATA_SYNE76, ., 3, ., 5, ., -0.30720.83900.9248yesno
Q2LXM9GATA_SYNAS6, ., 3, ., 5, ., -0.30030.84460.9195yesno
B0JSX3GATA_MICAN6, ., 3, ., 5, ., -0.30790.84280.9213yesno
B1WYP3GATA_CYAA56, ., 3, ., 5, ., -0.31160.82380.9024yesno
Q67KJ2GATA_SYMTH6, ., 3, ., 5, ., -0.30040.81620.8831yesno
Q9URY4YI01_SCHPO3, ., 5, ., 1, ., 40.38000.92040.8336yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
PRK06828491 PRK06828, PRK06828, amidase; Provisional 1e-136
PRK08137497 PRK08137, PRK08137, amidase; Provisional 1e-134
PRK06707536 PRK06707, PRK06707, amidase; Provisional 1e-108
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 1e-93
pfam01425431 pfam01425, Amidase, Amidase 3e-75
PRK11910615 PRK11910, PRK11910, amidase; Provisional 2e-68
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 4e-68
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 6e-65
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 6e-59
PRK07056454 PRK07056, PRK07056, amidase; Provisional 3e-42
PRK06170490 PRK06170, PRK06170, amidase; Provisional 2e-36
PRK09201465 PRK09201, PRK09201, amidase; Provisional 1e-34
PRK07486484 PRK07486, PRK07486, amidase; Provisional 3e-34
PRK05962424 PRK05962, PRK05962, amidase; Validated 1e-32
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 1e-32
PRK06565566 PRK06565, PRK06565, amidase; Validated 3e-32
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 6e-32
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 9e-31
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 9e-30
PRK07235502 PRK07235, PRK07235, amidase; Provisional 5e-29
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 3e-28
PRK07487469 PRK07487, PRK07487, amidase; Provisional 4e-28
PRK12470462 PRK12470, PRK12470, amidase; Provisional 1e-27
PRK07042464 PRK07042, PRK07042, amidase; Provisional 8e-25
PRK06061483 PRK06061, PRK06061, amidase; Provisional 9e-24
PRK07139439 PRK07139, PRK07139, amidase; Provisional 1e-18
PRK07869468 PRK07869, PRK07869, amidase; Provisional 3e-18
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 2e-17
PRK08310395 PRK08310, PRK08310, amidase; Provisional 3e-17
PRK06529482 PRK06529, PRK06529, amidase; Provisional 4e-17
PRK07869468 PRK07869, PRK07869, amidase; Provisional 0.002
PRK07486484 PRK07486, PRK07486, amidase; Provisional 0.003
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 0.004
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information 
 Score =  402 bits (1034), Expect = e-136
 Identities = 198/491 (40%), Positives = 276/491 (56%), Gaps = 25/491 (5%)

Query: 39  EATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKADLAR 95
           E TI +IQTA +  KLTS +LV +Y+ +I   +   P++ S++E+NPDA   AE  D  R
Sbjct: 12  ELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDHER 71

Query: 96  KRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVI 155
           K    R   G LHGIPVLLKD   T D ++TSAG+ AL   +   DA +V +LR+AGAVI
Sbjct: 72  KIKGVR---GPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVI 128

Query: 156 LGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGD---PCGSSSGSAISVAANMVTV 212
           LGKA++TE  +F +  ++  G+ AR GQ  NPY    D     GSS+GSAI+VAAN   V
Sbjct: 129 LGKANMTELANFMSF-EMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVV 187

Query: 213 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDV 272
           S+G+ET GSIL PA +NSVVG+KPTVGL SR G+IP     DT G  +RTV+DA  LL  
Sbjct: 188 SVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS 247

Query: 273 IVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNAL-NGSTVITAFE 331
           + G D +D   T ++        Y ++L+ NGL G ++GV  N       +G      F+
Sbjct: 248 LTGVDEKD-VVTHKSEGIAE-HDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFK 305

Query: 332 NHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSS-PVRS 390
             +  LR  GAT+V+D+       I +  +      +L   K +L+ YL +L S+ PV S
Sbjct: 306 ETIEVLRSEGATVVEDI------DIPSFHREWSWGVLLYELKHSLDNYLSKLPSTIPVHS 359

Query: 391 LADVIAFNQNNADMEKTKEYGQGTFISAEKTSG-FGEKE-RKAVELMEKLSQD-GIEKLM 447
           +++++ FN+N A  E+  +YGQ      +         E   A       SQ+ GI+  +
Sbjct: 360 ISELMEFNENIA--ERALKYGQTKLERRKDFPNTLRNPEYLNARLEDIYFSQEQGIDFAL 417

Query: 448 TENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYA 507
            +  LDA++ P      + A  GYP I +PAGY     PFGI       +E  LI++AYA
Sbjct: 418 EKYNLDAILFPSYIGSTICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLAYA 477

Query: 508 FEQATMIRRPP 518
           FEQAT  R+ P
Sbjct: 478 FEQATKHRKIP 488

Length = 491
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 528
PRK08137497 amidase; Provisional 100.0
PRK11910615 amidase; Provisional 100.0
PRK06828491 amidase; Provisional 100.0
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK06707536 amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
PRK06170490 amidase; Provisional 100.0
PRK07486484 amidase; Provisional 100.0
PRK07487469 amidase; Provisional 100.0
PRK09201465 amidase; Provisional 100.0
PRK06102452 hypothetical protein; Provisional 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK06565566 amidase; Validated 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
PRK07056454 amidase; Provisional 100.0
PRK12470462 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK06529482 amidase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07139439 amidase; Provisional 100.0
PRK08310395 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
>PRK08137 amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-100  Score=811.21  Aligned_cols=469  Identities=42%  Similarity=0.678  Sum_probs=383.8

Q ss_pred             cccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHh---CCCccEEEeeCHhHHHHHHHHHHHhHHhcCCCCCCCccccee
Q 009709           36 TIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETL---NPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPV  112 (528)
Q Consensus        36 ~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~---~~~~na~~~~~~~a~~~A~~~d~~~~~~~~g~~~gpL~GiPi  112 (528)
                      ++.++|+.+|+++|++|++||+|++++||+||+++   |+.+|||++++++|+++|+++|+++   ++|+.+||||||||
T Consensus         2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~al~~A~~~d~~~---~~g~~~gpL~GvPi   78 (497)
T PRK08137          2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAALDAER---KAGKVRGPLHGIPV   78 (497)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHHHHHHHHHHHHHH---hcCCCCCCcCCcee
Confidence            56778999999999999999999999999999987   5789999999988999999999988   78888999999999


Q ss_pred             eeecCcCcc-CCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 009709          113 LLKDTFATK-DKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPS  191 (528)
Q Consensus       113 ~vKD~~~~~-g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~  191 (528)
                      +|||||+++ | ++||+||+.++++++.+||++|+|||+|||||+||||||||+++..+ .+.+|+|++||+|+||||++
T Consensus        79 ~vKD~~~v~~G-~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~-~~~~g~n~~~G~t~NP~~~~  156 (497)
T PRK08137         79 LLKDNIDAADP-MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRST-RSSSGWSARGGLTRNPYALD  156 (497)
T ss_pred             eeecceeecCC-CCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCC-CCCCCCCCCCCCCCCCCCCC
Confidence            999999999 8 99999999999999999999999999999999999999999974432 14667999999999999999


Q ss_pred             CCCCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHH
Q 009709          192 GDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLD  271 (528)
Q Consensus       192 ~~~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~  271 (528)
                      |+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++++
T Consensus       157 ~~~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~  236 (497)
T PRK08137        157 RSPCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLT  236 (497)
T ss_pred             CCCCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCC
Q 009709          272 VIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMA  351 (528)
Q Consensus       272 ~l~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p  351 (528)
                      +|+|+|+.|+.+...|.   +..+|.+.+....++++||||+.+++   ..+++++++++++++.|+++||+|++ ++++
T Consensus       237 vl~g~d~~d~~~~~~~~---~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~  309 (497)
T PRK08137        237 AIAGGDPADPATASAPA---PAVDYVAALDADALRGARLGVARNYL---GYHPEVDAQFERALAELKAAGAVVID-VVDL  309 (497)
T ss_pred             HHhCCCCCCcccccCCC---CccchhhhccccccCCCEEEEEchhc---cCCHHHHHHHHHHHHHHHHCCCEEEe-ccCC
Confidence            99999999876543221   01134333322346889999997643   37899999999999999999999987 6666


Q ss_pred             chhhhcCCCCchhHHHHHHHHHHHHHHHHHhhc-cCCccchHHHHHHhhhchhhhhhhhcChhHHHhhhhcCCCc-HHHH
Q 009709          352 NVDVISNPGKSGELTAMLAGFKIALNEYLQELV-SSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFG-EKER  429 (528)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  429 (528)
                      .+..+.    ..+..++..|+...+..|+.... .....++.+++.+++.+.. .....+++.+.........++ .+|.
T Consensus       310 ~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (497)
T PRK08137        310 DDGDWG----EAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHA-REMPYFGQELFEQAQAAPGLDDPAYL  384 (497)
T ss_pred             chhhHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccch-hhhcccCHHHHHHHHccCCCCHHHHH
Confidence            544322    22345566787777777755321 2223456666554432111 112234444443333333333 3444


Q ss_pred             HHHHHHHHH-HHHHHHHHHhcCCCcEEEecCCC----------------chhhhhccCCCeEeeccccCCCCCceEEEEE
Q 009709          430 KAVELMEKL-SQDGIEKLMTENELDALVTPGTR----------------VIPVLALGGYPGITVPAGYEGNQMPFGICFG  492 (528)
Q Consensus       430 ~a~~~~~~~-~~~~~~~~~~~~~~DvLl~Pt~~----------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQlv  492 (528)
                      ++++.+++. .++.+.++|+++++|+||+||++                ++.++|++|+|+++||+|+. +|||+||||+
T Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvQli  463 (497)
T PRK08137        385 DALADAKRLAGPEGIDAALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV-QGLPVGLSFI  463 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCCCCcccccccccccccccccccHhhCCCeEEEeCCCC-CCcCeEEEEE
Confidence            544434444 34679999986689999999975                35678999999999999997 8999999999


Q ss_pred             ccCCChHHHHHHHHHHHHHcCCCCCCCCCC
Q 009709          493 GLKGTEPKLIEIAYAFEQATMIRRPPFVTP  522 (528)
Q Consensus       493 g~~~~D~~LL~~A~~lE~~~~~~~~p~~~p  522 (528)
                      |++|+|+.||++|++||+..+|+++|.+.+
T Consensus       464 g~~~~d~~LL~~a~~lE~~~~~~~~p~~~~  493 (497)
T PRK08137        464 GAAWSEARLLELGYAYEQATHARREPRFVE  493 (497)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence            999999999999999999999998887754

>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 1e-77
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 6e-24
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 7e-24
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 1e-22
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 2e-22
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 3e-20
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 5e-18
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 1e-17
2dc0_A434 Crystal Structure Of Amidase Length = 434 2e-15
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 9e-14
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-13
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 9e-12
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 2e-06
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 2e-06
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 2e-06
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 2e-06
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 2e-06
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 2e-06
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 6e-06
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 9e-06
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure 
Iteration: 1

 Score =  287 bits (735), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 198/513 (38%), Positives = 275/513 (53%), Gaps = 40/513 (7%)
Query: 35  FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKA 91
           F   E  + ++Q      +L ST L + Y+ +I  L+   PRLR+VIE+NPDA  +A + 
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 65
Query: 92  DLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDA 151
           D  R+  +     G LHGIP+LLKD       + TSAGS AL G   P DA +V RLRDA
Sbjct: 66  DRERRDGR---LRGPLHGIPLLLKDNI-NAAPMATSAGSLALQG-FRPDDAYLVRRLRDA 120
Query: 152 GAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVT 211
           GAV+LGK +L+EW +FR    I +GW AR GQ +NPY                   N+ +
Sbjct: 121 GAVVLGKTNLSEWANFRGNDSI-SGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLAS 179
Query: 212 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLD 271
           V++G+ET GSI+CPA  N VVGLKPTVGL SR G+IP+    DT G ++R+V+DA  +L 
Sbjct: 180 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239
Query: 272 VIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFE 331
            I G D  D    +   R   V  Y   L+  GL+GKR+G+++      L    +    E
Sbjct: 240 AIAGRDDADPATATMPGRA--VYDYTARLDPQGLRGKRIGLLQTPL---LKYRGMPPLIE 294
Query: 332 NHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSL 391
                LR++GA +V  +E+ N    +      E T +L  FK  L  Y      +P+RSL
Sbjct: 295 QAATELRRAGAVVV-PVELPNQGAWAE----AERTLLLYEFKAGLERYFNTH-RAPLRSL 348
Query: 392 ADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKE--RKAVELMEKLSQDGIEKLMTE 449
           AD+IAFNQ ++  E    +GQ   + A+ T+G  +    R   +       +GI+  +  
Sbjct: 349 ADLIAFNQAHSKQE-LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAA 407
Query: 450 NELDALVTPGTRVI-PV--------------LALGGYPGITVPAGYEGNQMPFGICFGGL 494
           ++LDALV P T V  P+               A+ GYP +TVP G + + +P G+ F G 
Sbjct: 408 HQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMG-QIDGLPVGLLFMGT 466
Query: 495 KGTEPKLIEIAYAFEQATMIRRPP-FVTPFWID 526
             +EPKLIE+AYA+EQ T  RRPP F T   ID
Sbjct: 467 AWSEPKLIEMAYAYEQRTRARRPPHFDTDALID 499
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query528
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 0.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 5e-74
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-68
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-04
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-66
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-04
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 2e-65
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 7e-64
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 7e-05
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 2e-62
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 1e-60
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 2e-04
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 1e-59
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 2e-46
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
 Score =  551 bits (1423), Expect = 0.0
 Identities = 209/515 (40%), Positives = 287/515 (55%), Gaps = 40/515 (7%)

Query: 35  FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKA 91
           F   E  + ++Q      +L ST L + Y+ +I  L+   PRLR+VIE+NPDA  +A + 
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 65

Query: 92  DLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDA 151
           D  R+  + R   G LHGIP+LLKD       + TSAGS AL G   P DA +V RLRDA
Sbjct: 66  DRERRDGRLR---GPLHGIPLLLKDNINAAP-MATSAGSLALQG-FRPDDAYLVRRLRDA 120

Query: 152 GAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVT 211
           GAV+LGK +L+EW +FR      +GW AR GQ +NPY  S  PCGSSSGSA++VAAN+ +
Sbjct: 121 GAVVLGKTNLSEWANFRGN-DSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLAS 179

Query: 212 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLD 271
           V++G+ET GSI+CPA  N VVGLKPTVGL SR G+IP+    DT G ++R+V+DA  +L 
Sbjct: 180 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239

Query: 272 VIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFE 331
            I G D  D    +       V  Y   L+  GL+GKR+G+++           +    E
Sbjct: 240 AIAGRDDAD--PATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL---KYRGMPPLIE 294

Query: 332 NHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSL 391
                LR++GA +V  +E+ N    +      E T +L  FK  L  Y      +P+RSL
Sbjct: 295 QAATELRRAGAVVV-PVELPNQGAWA----EAERTLLLYEFKAGLERYFNTH-RAPLRSL 348

Query: 392 ADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKE-RKAVELMEKLS-QDGIEKLMTE 449
           AD+IAFNQ ++  E    +GQ   + A+ T+G  +    +A     +L+  +GI+  +  
Sbjct: 349 ADLIAFNQAHSKQE-LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAA 407

Query: 450 NELDALVTPGTRVIP---------------VLALGGYPGITVPAGYEGNQMPFGICFGGL 494
           ++LDALV P T V                   A+ GYP +TVP G     +P G+ F G 
Sbjct: 408 HQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQIDG-LPVGLLFMGT 466

Query: 495 KGTEPKLIEIAYAFEQATMIRRPP-FVTPFWIDER 528
             +EPKLIE+AYA+EQ T  RRPP F T   ID  
Sbjct: 467 AWSEPKLIEMAYAYEQRTRARRPPHFDTDALIDAG 501
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-104  Score=848.16  Aligned_cols=475  Identities=42%  Similarity=0.678  Sum_probs=400.1

Q ss_pred             CCCcccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhC---CCccEEEeeCHhHHHHHHHHHHHhHHhcCCCCCCCc
Q 009709           31 GQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGEL  107 (528)
Q Consensus        31 ~~~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~---~~~na~~~~~~~a~~~A~~~d~~~~~~~~g~~~gpL  107 (528)
                      +...|++.++|+.+|+++|++|++|++||+++||+||+++|   +.+|||+++++||+++|+++|+++   ++|+.+|||
T Consensus         2 ~~~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~---~~g~~~gpL   78 (503)
T 1m22_A            2 RNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER---RDGRLRGPL   78 (503)
T ss_dssp             ---CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH---HTTCCCSTT
T ss_pred             CCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH---HcCCCCCCc
Confidence            34567899999999999999999999999999999999999   999999999988999999999988   788889999


Q ss_pred             ccceeeeecCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCC
Q 009709          108 HGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNP  187 (528)
Q Consensus       108 ~GiPi~vKD~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP  187 (528)
                      |||||+|||||+++| ++||+||+.++++++ +||++|+|||+|||||+||||||||+++.++ .+.+|+|++||+|+||
T Consensus        79 ~GvPi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~-~~~~~~n~~~G~t~NP  155 (503)
T 1m22_A           79 HGIPLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGN-DSISGWSARGGQTRNP  155 (503)
T ss_dssp             TTCEEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCT-TCCTTEETTTEECCCT
T ss_pred             CCceeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCC-CCCCCCCCCCCCCCCC
Confidence            999999999999996 999999999999999 9999999999999999999999999974432 2467899999999999


Q ss_pred             CCCCCCCCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHH
Q 009709          188 YLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAV  267 (528)
Q Consensus       188 ~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a  267 (528)
                      ||++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++
T Consensus       156 ~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a  235 (503)
T 1m22_A          156 YRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAA  235 (503)
T ss_dssp             TSTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHH
T ss_pred             CCCCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeec
Q 009709          268 YLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDD  347 (528)
Q Consensus       268 ~~l~~l~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~  347 (528)
                      +++++|+|+|+.|+.+...|.  .+..+|...+....++++||||+.+++ .  ++++++++++++++.|+++||+|++ 
T Consensus       236 ~~l~vl~g~d~~d~~~~~~~~--~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-  309 (503)
T 1m22_A          236 AVLTAIAGRDDADPATATMPG--RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-  309 (503)
T ss_dssp             HHHHHHCCCCTTCGGGGGCTT--CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-
T ss_pred             HHHHHHcCCCCCCcccccccc--ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-
Confidence            999999999999976644331  011245544432356899999998764 2  6899999999999999999999997 


Q ss_pred             cCCCchhhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHhhhchhhhhhhhcChhHHHhhhhcCCC-cH
Q 009709          348 LEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGF-GE  426 (528)
Q Consensus       348 ~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  426 (528)
                      +++|.++++.    ..+..++..|+..++..|+.... .+.+.+.+++.+++.++. +....+++.++.+....... ..
T Consensus       310 ~~~p~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  383 (503)
T 1m22_A          310 VELPNQGAWA----EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADP  383 (503)
T ss_dssp             ECCTTTTTTH----HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCH
T ss_pred             eCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHH
Confidence            6877654322    12355667788888888887653 455677777766544331 22334566555444433333 45


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHhcCCCcEEEecCCC---------------chhhhhccCCCeEeeccccCCCCCceEEE
Q 009709          427 KERKAVELMEKLSQDG-IEKLMTENELDALVTPGTR---------------VIPVLALGGYPGITVPAGYEGNQMPFGIC  490 (528)
Q Consensus       427 ~~~~a~~~~~~~~~~~-~~~~~~~~~~DvLl~Pt~~---------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQ  490 (528)
                      +|.++.++++++.++. +.++|+++++|+||+||++               +|.++|++|+|+++||+|+. +|||+|||
T Consensus       384 ~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvq  462 (503)
T 1m22_A          384 AYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLL  462 (503)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEE
Confidence            5666666666554442 9999987779999999973               57889999999999999987 89999999


Q ss_pred             EEccCCChHHHHHHHHHHHHHcCCCCCCCCCCCCc
Q 009709          491 FGGLKGTEPKLIEIAYAFEQATMIRRPPFVTPFWI  525 (528)
Q Consensus       491 lvg~~~~D~~LL~~A~~lE~~~~~~~~p~~~p~~~  525 (528)
                      |+|++|+|++||++|++||++++|+++|.+.| |+
T Consensus       463 lvg~~~~d~~lL~~A~~~E~~~~~~~~p~~~~-~~  496 (503)
T 1m22_A          463 FMGTAWSEPKLIEMAYAYEQRTRARRPPHFDT-DA  496 (503)
T ss_dssp             EECSTTCHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred             EECCCCChHHHHHHHHHHHHhhCCCCCCCCCC-CC
Confidence            99999999999999999999999999988887 54
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 528
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 5e-78
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 5e-68
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 5e-64
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 3e-47
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 9e-25
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 5e-10
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  251 bits (641), Expect = 5e-78
 Identities = 120/500 (24%), Positives = 212/500 (42%), Gaps = 48/500 (9%)

Query: 36  TIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLA 94
           +I   +++ + T     K+  + +V+     IE  +P ++S + ++ + A  +A++ D  
Sbjct: 2   SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61

Query: 95  RKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAV 154
           + ++Q     G+L GIP+ +KD   T   L T+  S  L G V   ++TV+E+L    AV
Sbjct: 62  QAKDQ---MDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAV 117

Query: 155 ILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSL 214
           ++GK ++ E+          +   +   +  NP+     P GSS GSA +VAA +V +SL
Sbjct: 118 LIGKLNMDEF------AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSL 171

Query: 215 GSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIV 274
           GS+T GSI  PA    VVG+KPT G  SR G++      D IG ++R V D   +L+ I 
Sbjct: 172 GSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAIS 231

Query: 275 GFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHL 334
           G D  D       +  +    +   + ++ +KG ++ + +      +    V  A +N +
Sbjct: 232 GADVNDS-----TSAPVDDVDFTSEIGKD-IKGLKVALPKEYLGEGVA-DDVKEAVQNAV 284

Query: 335 NTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADV 394
            TL+  GA +  ++ + N       G         +     L+ +         +    +
Sbjct: 285 ETLKSLGAVVE-EVSLPNTKF----GIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSL 339

Query: 395 IAFNQNNADMEKTKEYGQGTFISAEKTS-GFGEKERKAVELMEKLSQDGIEKLMTENELD 453
               + +      KE  +  F+     S G+ +   K  + +  L ++  +K+      D
Sbjct: 340 EELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVF--ENYD 397

Query: 454 ALVTPGTRVIP---------------------VLALGGYPGITVPAGYEGNQMPFGICFG 492
            +V P                            + L G PGI+VP G   N  P G+ F 
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFI 456

Query: 493 GLKGTEPKLIEIAYAFEQAT 512
           G    E  L  +AY +E   
Sbjct: 457 GKPFDEKTLYRVAYQYETQY 476
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query528
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=7.8e-99  Score=804.18  Aligned_cols=451  Identities=26%  Similarity=0.399  Sum_probs=375.5

Q ss_pred             ccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCcccceee
Q 009709           35 FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPVL  113 (528)
Q Consensus        35 ~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi~  113 (528)
                      ++|++.|+.||+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++   ++|+.+||||||||+
T Consensus         1 m~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~---~~~~~~gpL~GiPi~   77 (485)
T d2f2aa1           1 MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ---AKDQMDGKLFGIPMG   77 (485)
T ss_dssp             CCSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHH---HTTCCCSTTTTCEEE
T ss_pred             CCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHH---HCCCCCCCcCcCeEE
Confidence            4678899999999999999999999999999999999999999999998 999999999998   789999999999999


Q ss_pred             eecCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 009709          114 LKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGD  193 (528)
Q Consensus       114 vKD~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~~~  193 (528)
                      |||+|+++| ++||+||.+++++++.+|+++|++|+++|||++|||||+||++      +..+.|.+||+|+||||++++
T Consensus        78 vKD~~~v~g-~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~------~~~~~n~~~g~~~NP~~~~~~  150 (485)
T d2f2aa1          78 IKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM------GGSTETSYFKKTVNPFDHKAV  150 (485)
T ss_dssp             EETTBCBTT-BCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC------CSSSTTCSSCCCCBTTBTTBC
T ss_pred             EEcccccCC-CccCCcChhhccCCccccccccccccccccccccccchhhhcc------cccccCccccCcCCCCCcccc
Confidence            999999996 9999999999999999999999999999999999999999998      667899999999999999999


Q ss_pred             CCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHHHH
Q 009709          194 PCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVI  273 (528)
Q Consensus       194 ~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~l  273 (528)
                      |||||||||+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|
T Consensus       151 ~GGSSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~  230 (485)
T d2f2aa1         151 PGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAI  230 (485)
T ss_dssp             CCSSSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHH
T ss_pred             cCCccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCCch
Q 009709          274 VGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANV  353 (528)
Q Consensus       274 ~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p~~  353 (528)
                      .|+++.|+.+...     +..+|...+. .+++++|||++.+++.. .++++++++++++++.|+++|++|++ +++|.+
T Consensus       231 ~g~~~~d~~~~~~-----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~i~~a~~~a~~~L~~~G~~v~e-v~lp~~  302 (485)
T d2f2aa1         231 SGADVNDSTSAPV-----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNT  302 (485)
T ss_dssp             BSCBTTBTTSCCC-----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTG
T ss_pred             ccccccccccCCC-----Cccchhhhhc-CCccCCEEEEEcccccC-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCch
Confidence            9999999766543     2335655554 46899999999887654 68999999999999999999999998 788865


Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHhh---ccCCccchHHHHHHhhhchhhhhhhhcChhHHHh-----hhhcCCCc
Q 009709          354 DVISNPGKSGELTAMLAGFKIALNEYLQEL---VSSPVRSLADVIAFNQNNADMEKTKEYGQGTFIS-----AEKTSGFG  425 (528)
Q Consensus       354 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  425 (528)
                      ....    ..+..+...|+...+..|....   .....+.+.++....+.       ..+++....+     ......+.
T Consensus       303 ~~~~----~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~  371 (485)
T d2f2aa1         303 KFGI----PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRS-------EGFGKEVKRRIFLGTFALSSGYY  371 (485)
T ss_dssp             GGHH----HHHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHH-------HHSCHHHHHHHHHHHHHHSTTTT
T ss_pred             hhhH----HHHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHhhh-------hhcCHHHHHHHHhhhhhhcchhH
Confidence            4432    1233444555554443332111   11123445555443321       1222322211     11112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEecCCC---------------------chhhhhccCCCeEeeccccCCCC
Q 009709          426 EKERKAVELMEKLSQDGIEKLMTENELDALVTPGTR---------------------VIPVLALGGYPGITVPAGYEGNQ  484 (528)
Q Consensus       426 ~~~~~a~~~~~~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~G  484 (528)
                      ...++..++.+...++.++++|+  ++|+||+|+++                     +|.++|++|+|+++||+|+. +|
T Consensus       372 ~a~~~~~~~~~~~~~~~~~~~f~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-dG  448 (485)
T d2f2aa1         372 DAYYKKSQKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NG  448 (485)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc--cCCEEEeCCCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCCC-CC
Confidence            22233334444555667888997  59999999975                     46789999999999999975 89


Q ss_pred             CceEEEEEccCCChHHHHHHHHHHHHHcCCCCC
Q 009709          485 MPFGICFGGLKGTEPKLIEIAYAFEQATMIRRP  517 (528)
Q Consensus       485 lPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~  517 (528)
                      ||+||||+|++|+|+.||++|++||++++|++.
T Consensus       449 lPvGlQiig~~~~D~~LL~~A~~~E~~~~~~~~  481 (485)
T d2f2aa1         449 RPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDV  481 (485)
T ss_dssp             EEEEEEEECSTTCHHHHHHHHHHHHHHSCCTTT
T ss_pred             CCEeEEEECCCCCHHHHHHHHHHHHhhCCCCcC
Confidence            999999999999999999999999999998644
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure