Citrus Sinensis ID: 009782
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 526 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SB36 | 527 | Pentatricopeptide repeat- | yes | no | 0.950 | 0.948 | 0.634 | 0.0 | |
| Q9STF3 | 657 | Pentatricopeptide repeat- | no | no | 0.855 | 0.684 | 0.371 | 2e-82 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.830 | 0.501 | 0.366 | 3e-77 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.834 | 0.592 | 0.333 | 6e-75 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.832 | 0.628 | 0.334 | 7e-75 | |
| Q9CA56 | 895 | Pentatricopeptide repeat- | no | no | 0.826 | 0.486 | 0.348 | 1e-72 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.859 | 0.531 | 0.321 | 6e-72 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.899 | 0.750 | 0.313 | 7e-72 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.815 | 0.594 | 0.311 | 5e-71 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.834 | 0.533 | 0.350 | 6e-71 |
| >sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/501 (63%), Positives = 400/501 (79%), Gaps = 1/501 (0%)
Query: 26 RSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQN 85
R +Q +Q +Q N T S+ K SPTPLL +++ +T+L+ALDS+I DLE+S Q
Sbjct: 26 RHHQQLKQHRQNQYNNNGFTSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQK 85
Query: 86 GITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
GI++ + E FASLLETCY L+A++HG+++H LIP LLR N GISSKL+RLYA+ G +
Sbjct: 86 GISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEV 145
Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
AH+VFD+MS R + F WNSLISGYAELG+YEDA+ALYFQM E+GV+PD+FTFPRVLKAC
Sbjct: 146 AHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKAC 205
Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
G+G +++GE +H D V+ GFG+D +VLNALV MYAKCGDIVKAR VFD I +KD +S+N
Sbjct: 206 GGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWN 265
Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
SMLTGY+HHGLL EA DIFR M+ NG +PD VAISS+LA + G Q+HGWV+RRG+E
Sbjct: 266 SMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGME 325
Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERD 384
W+L +AN+LIV+YSK G+L QAC++FD M ++D VSWN+II AHSK+ L YFEQM R
Sbjct: 326 WELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRA 385
Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
PD +TFVS+LS CA+ G V+ GERLFS+M ++YGI P++EHYACMVNLYGRAG+++E
Sbjct: 386 NAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEE 445
Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
AYSMIV++M EA P VWGALLYACYLHGN +GE AAQ+LFELEPDNEHNFELLI+IY
Sbjct: 446 AYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYS 505
Query: 505 NAGRLDDVERVERMLVDRGLE 525
A R +DVERV +M+VDRGLE
Sbjct: 506 KAKRAEDVERVRQMMVDRGLE 526
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 277/474 (58%), Gaps = 24/474 (5%)
Query: 73 DSIIQDL--ESSVQNGITV-------QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLR 123
+ +IQ L E ++ I V +T+ L+ C ++ +++HR I N
Sbjct: 50 NQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSD 109
Query: 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYF 183
++ +++KL+ +Y+ G +D A +VFD+ RT + WN+L G E+ + LY+
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYV--WNALFRALTLAGHGEEVLGLYW 167
Query: 184 QMEEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239
+M GVE D+FT+ VLKAC + + G+++H R G+ +++ LVDMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY 227
Query: 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD--PDPVA 297
A+ G + A VF + ++++S+++M+ Y +G EA FR M+ D P+ V
Sbjct: 228 ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287
Query: 298 ISSIL-ANASL--LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354
+ S+L A ASL L G +HG++LRRG++ L + ++L+ +Y + GKL+ +FD M
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347
Query: 355 QKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411
+DVVSWNS+I + H +A+ FE+M +G P +TFVS+L AC+H G V+ G+R
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407
Query: 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL 471
LF M +GI P++EHYACMV+L GRA +DEA M V+ M E P VWG+LL +C +
Sbjct: 408 LFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKM-VQDMRTEPGPKVWGSLLGSCRI 466
Query: 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
HGNV + E A+++LF LEP N N+ LL IY A D+V+RV+++L RGL+
Sbjct: 467 HGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520
|
Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 250/447 (55%), Gaps = 10/447 (2%)
Query: 85 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
+GI + T S+ C + + G +H + + + LL +Y+ G +D
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349
Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
A VF +MS+R+ ++ S+I+GYA G +A+ L+ +MEEEG+ PD +T VL C
Sbjct: 350 AKAVFREMSDRSVVSYT--SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407
Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
A L+ G++VH GFD FV NAL+DMYAKCG + +A VF + KD+IS+N
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467
Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSIL---ANASLLRIGAQVHGWVLR 320
+++ GY + EA +F ++ F PD ++ +L A+ S G ++HG+++R
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527
Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
G D +ANSL+ +Y+K G L A LFD + KD+VSW +I H EA+
Sbjct: 528 NGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIAL 587
Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
F QM + G+ D ++FVSLL AC+H G V G R F++M + I P VEHYAC+V++
Sbjct: 588 FNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLA 647
Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
R G + +AY I E M +WGALL C +H +V + E A+K+FELEP+N +
Sbjct: 648 RTGDLIKAYRFI-ENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 706
Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
L+ IY A + + V+R+ + + RGL
Sbjct: 707 LMANIYAEAEKWEQVKRLRKRIGQRGL 733
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/477 (33%), Positives = 272/477 (57%), Gaps = 38/477 (7%)
Query: 86 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145
G+ + TF +L++C + KA + G ++H + + + + L+ +Y G +++A
Sbjct: 129 GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDA 188
Query: 146 HQVFDQMSNRTAFAF-----------------------------PWNSLISGYAELGEYE 176
H+VFD+ +R ++ WN++ISGYAE G Y+
Sbjct: 189 HKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248
Query: 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236
+A+ L+ M + V PD+ T V+ ACA G I +G +VHL GFG + ++NAL+
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308
Query: 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296
D+Y+KCG++ A +F+R+ KD+IS+N+++ GY H L EA +F+ M+ +G P+ V
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368
Query: 297 AISSIL---ANASLLRIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFD 351
+ SIL A+ + IG +H ++ +R GV + SLI +Y+K G ++ A +F+
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428
Query: 352 HMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408
+ K + SWN++I H + + F +M + G+ PD +TFV LLSAC+H G + +
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488
Query: 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468
G +F M + Y ++P++EHY CM++L G +GL + ++ ME E V+W +LL A
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLF-KEAEEMINMMEMEPDGVIWCSLLKA 547
Query: 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
C +HGNV +GE+ A+ L ++EP+N ++ LL IY +AGR ++V + +L D+G++
Sbjct: 548 CKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 162/485 (33%), Positives = 265/485 (54%), Gaps = 47/485 (9%)
Query: 84 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
+ G + +FAS+L C L + G+++H LI + + I S L+ +Y+ G ++
Sbjct: 145 KEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVN 204
Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203
+A +VFD+M +R + WNSLI+ + + G +A+ ++ M E VEPD+ T V+ A
Sbjct: 205 DAQRVFDEMGDRNVVS--WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISA 262
Query: 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFD--------- 253
CA L I+VG++VH V+ + +L NA VDMYAKC I +AR +FD
Sbjct: 263 CASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIA 322
Query: 254 ----------------------RIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
++ ++++S+N+++ GY +G EA +F +
Sbjct: 323 ETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382
Query: 292 DPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEW------DLCIANSLIVVYSKDGK 342
P + ++IL A+ + L +G Q H VL+ G ++ D+ + NSLI +Y K G
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 343 LDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSA 399
+++ +F M ++D VSWN++I +++ +EAL F +M G PDH+T + +LSA
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 502
Query: 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459
C H G V+ G FS M +G++P +HY CMV+L GRAG ++EA SMI E+M +
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMI-EEMPMQPDS 561
Query: 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519
V+WG+LL AC +H N+ +G+ A+KL E+EP N + LL +Y G+ +DV V + +
Sbjct: 562 VIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSM 621
Query: 520 VDRGL 524
G+
Sbjct: 622 RKEGV 626
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 249/451 (55%), Gaps = 16/451 (3%)
Query: 83 VQNGITVQTETFASLLET--CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
+Q G+ + SLL C L HG L + +L + S L LY+ G
Sbjct: 445 LQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLT-----VGSSLFTLYSKCG 499
Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
++E++++F + + W S+ISG+ E G +AI L+ +M ++G PD+ T V
Sbjct: 500 SLEESYKLFQGIPFKDNAC--WASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAV 557
Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260
L C+ + G+++H +R G + +ALV+MY+KCG + AR V+DR+ D
Sbjct: 558 LTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDP 617
Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL---LRIGAQVHGW 317
+S +S+++GY HGL+ + F +FR M+++GF D AISSIL A+L +GAQVH +
Sbjct: 618 VSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAY 677
Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEA 374
+ + G+ + + +SL+ +YSK G +D C F + D+++W ++I + H K +EA
Sbjct: 678 ITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEA 737
Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
L + M+ G PD +TFV +LSAC+H G V+ + MV+ YGI P HY CMV+
Sbjct: 738 LQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVD 797
Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
GR+G + EA S I M + +VWG LL AC +HG V +G+ AA+K ELEP +
Sbjct: 798 ALGRSGRLREAESFI-NNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAG 856
Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
+ L I G D+VE +++ G++
Sbjct: 857 AYISLSNILAEVGEWDEVEETRKLMKGTGVQ 887
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 165/514 (32%), Positives = 270/514 (52%), Gaps = 62/514 (12%)
Query: 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
PK L+ + + G T ++L C L G +LH T+ + +
Sbjct: 209 PKVALEMFSRMTNEF------GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ 262
Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
N + + L+ +YA G++DEA+ VF MS + + WN++++GY+++G +EDA+ L+ +
Sbjct: 263 NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS--WNAMVAGYSQIGRFEDAVRLFEK 320
Query: 185 MEEE-----------------------------------GVEPDQFTFPRVLKACAGLGL 209
M+EE G++P++ T VL CA +G
Sbjct: 321 MQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGA 380
Query: 210 IRVGEKVHLDAVRF-------GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK--DL 260
+ G+++H A+++ G G + V+N L+DMYAKC + AR +FD + K D+
Sbjct: 381 LMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDV 440
Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS---SILANASL--LRIGAQVH 315
+++ M+ GY HG +A ++ M P A + +++A ASL LRIG Q+H
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH 500
Query: 316 GWVLRRGVEW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKD 371
+ LR L ++N LI +Y+K G + A +FD+M K+ V+W S++ H
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560
Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
EAL F++M R G D +T + +L AC+H G + G F+ M +G+SP EHYAC
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620
Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
+V+L GRAG ++ A +I E+M E PVVW A L C +HG V +GE AA+K+ EL +
Sbjct: 621 LVDLLGRAGRLNAALRLI-EEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASN 679
Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
++ ++ LL +Y NAGR DV R+ ++ +G++
Sbjct: 680 HDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVK 713
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (694), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 280/501 (55%), Gaps = 28/501 (5%)
Query: 37 QISRNRITTFSSYPKSSPTPLLTN------QKAFPKTKLQALDSIIQDLESSVQNGITVQ 90
++ R +T SY + T LL+ Q+ P+ ++A+DS+ +G+
Sbjct: 9 KLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRA-MKAMDSL-------QSHGLWAD 60
Query: 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150
+ T++ L++ C +AV G + R + N R + + L+ +Y F L+++AHQ+FD
Sbjct: 61 SATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFD 120
Query: 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210
QM R + W ++IS Y++ ++ A+ L M + V P+ +T+ VL++C G+ +
Sbjct: 121 QMPQRNVIS--WTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178
Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
R+ +H ++ G D FV +AL+D++AK G+ A +VFD + D I +NS++ G+
Sbjct: 179 RM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235
Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
+ A ++F+ M GF + ++S+L +LL +G Q H +++ + DL
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 293
Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERD 384
+ N+L+ +Y K G L+ A +F+ M ++DV++W+++I +++ EAL FE+M+
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353
Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
G P+++T V +L AC+H G ++ G F M + YGI P EHY CM++L G+AG +D+
Sbjct: 354 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDD 413
Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
A ++ E ME E V W LL AC + N+ + E AA+K+ L+P++ + LL IY
Sbjct: 414 AVKLLNE-MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYA 472
Query: 505 NAGRLDDVERVERMLVDRGLE 525
N+ + D VE + + DRG++
Sbjct: 473 NSQKWDSVEEIRTRMRDRGIK 493
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 258/469 (55%), Gaps = 40/469 (8%)
Query: 93 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
+F +L+ ++ A+ G++LH + + + + + +YA+ G I+ A VFD+M
Sbjct: 113 SFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEM 172
Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
S+R WN++I Y G ++A L+ +M++ V PD+ ++ AC G +R
Sbjct: 173 SHRDVVT--WNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRY 230
Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYA-------------------------------K 241
++ + D +L ALV MYA K
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 242 CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301
CG + A+ +FD+ KDL+ + +M++ Y+ EA +F M +G PD V++ S+
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350
Query: 302 L---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV 358
+ AN +L VH + G+E +L I N+LI +Y+K G LD +F+ MP+++V
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410
Query: 359 VSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415
VSW+S+I+A H + +AL F +M+++ V P+ +TFV +L C+H G V+ G+++F+
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 470
Query: 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNV 475
M ++Y I+P++EHY CMV+L+GRA L+ EA ++E M ++ V+WG+L+ AC +HG +
Sbjct: 471 MTDEYNITPKLEHYGCMVDLFGRANLLREALE-VIESMPVASNVVIWGSLMSACRIHGEL 529
Query: 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
+G+ AA+++ ELEPD++ L+ IY R +DV + R++ ++ +
Sbjct: 530 ELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNV 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/453 (35%), Positives = 257/453 (56%), Gaps = 14/453 (3%)
Query: 82 SVQNGI-TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
++ NG+ + + T SLL C + G+ +H + L +S+KL+ LYA FG
Sbjct: 237 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG 296
Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPR 199
+ + +VFD+M R + WNS+I Y EL E AI+L+ +M ++PD T
Sbjct: 297 RLRDCQKVFDRMYVRDLIS--WNSIIKAY-ELNEQPLRAISLFQEMRLSRIQPDCLTLIS 353
Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNK 258
+ + LG IR V +R G+ + + NA+V MYAK G + AR VF+ + N
Sbjct: 354 LASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNT 413
Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNG----FDPDPVAISSILANASLLRIGAQV 314
D+IS+N++++GY +G EA +++ M G V++ + A LR G ++
Sbjct: 414 DVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKL 473
Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS---KD 371
HG +L+ G+ D+ + SL +Y K G+L+ A LF +P+ + V WN++I H
Sbjct: 474 HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHG 533
Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
+A++ F++M +GV PDH+TFV+LLSAC+H G V G+ F +M YGI+P ++HY C
Sbjct: 534 EKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC 593
Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
MV++YGRAG ++ A I + M + +WGALL AC +HGNV +G+ A++ LFE+EP+
Sbjct: 594 MVDMYGRAGQLETALKFI-KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPE 652
Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
+ LL +Y +AG+ + V+ + + +GL
Sbjct: 653 HVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 526 | ||||||
| 225466051 | 516 | PREDICTED: pentatricopeptide repeat-cont | 0.960 | 0.978 | 0.660 | 0.0 | |
| 297799466 | 758 | hypothetical protein ARALYDRAFT_354257 [ | 0.963 | 0.668 | 0.636 | 0.0 | |
| 15234984 | 527 | pentatricopeptide repeat-containing prot | 0.950 | 0.948 | 0.634 | 0.0 | |
| 449460860 | 489 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.995 | 0.650 | 0.0 | |
| 449499688 | 489 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.925 | 0.995 | 0.650 | 0.0 | |
| 224136754 | 442 | predicted protein [Populus trichocarpa] | 0.840 | 1.0 | 0.703 | 0.0 | |
| 356529889 | 526 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.937 | 0.621 | 0.0 | |
| 255641788 | 481 | unknown [Glycine max] | 0.813 | 0.889 | 0.612 | 1e-156 | |
| 255539733 | 461 | pentatricopeptide repeat-containing prot | 0.766 | 0.874 | 0.615 | 1e-149 | |
| 27573363 | 515 | hypothetical protein [Oryza sativa Japon | 0.933 | 0.953 | 0.401 | 2e-97 |
| >gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Vitis vinifera] gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/506 (66%), Positives = 408/506 (80%), Gaps = 1/506 (0%)
Query: 20 CGSKNKRSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDL 79
C K+ + K + QKQ+Q R+ +PKSSPTPLL N K TKLQAL+++++DL
Sbjct: 9 CLHKSLKINKTQLQKQKQFHRDTKPNLV-FPKSSPTPLLINHKPRNHTKLQALEALLRDL 67
Query: 80 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139
++S+Q+GITV + F+SLLETC+QL+A +HGI++HRLIPT+LLRK+ +SSKLLRLYA+
Sbjct: 68 QASIQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASI 127
Query: 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199
G I+EAH++FDQMS R AF WNSLISGYAELG YEDA+ALYFQMEEEGV PD+FTFPR
Sbjct: 128 GRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPR 187
Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
VLKAC G+G I VGE+VH VR GF DGFVLNALVDMYAKCGDIVKAR VFD+I +D
Sbjct: 188 VLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRD 247
Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319
+S+NSMLTGYI HGL ++A IFR M+ GF+PD VAIS+++ L++ Q+HGWVL
Sbjct: 248 SVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSLKLAGQIHGWVL 307
Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFE 379
RRGV+W+L IANSLIV+YS GKLDQACWLFDHMP++DVVSWNSII AH KD +A+ YF
Sbjct: 308 RRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIISAHRKDLKAITYFS 367
Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
+M++ VLPD +TFVSLLSACAHLG VK GE LFS+M E YG+ P +EHYACMVNLYGRA
Sbjct: 368 RMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACMVNLYGRA 427
Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
GLI+EAY +I ++MEFEA P VWGALLYACY H NV +G+ AA+ LFELEPDNEHNFELL
Sbjct: 428 GLIEEAYEIIEKRMEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFELEPDNEHNFELL 487
Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
+ IY N GRL+DVE+V +M+ DRG +
Sbjct: 488 MNIYRNVGRLEDVEKVRKMMADRGFD 513
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/509 (63%), Positives = 406/509 (79%), Gaps = 2/509 (0%)
Query: 19 HCGSKNK-RSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQ 77
H GS K R +Q +Q +Q N T S+ K SPTPLL +++ +T+L+ALDS+I
Sbjct: 249 HLGSSLKPRHHQQLKQHRQNEYNNSGFTSLSFTKPSPTPLLIGKQSIHRTQLEALDSVIT 308
Query: 78 DLESSVQNGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136
DLE+S Q GI++ + E FASLLETCY L+A++HG+++H LIP LLR N GISSKL+RLY
Sbjct: 309 DLEASAQKGISITEPEIFASLLETCYNLRAIDHGVRVHHLIPPYLLRNNVGISSKLVRLY 368
Query: 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
A+ G + AH+VFD+MS R + F WNSLISGYAELG+YEDA+ALYFQM E+GV+PD+FT
Sbjct: 369 ASCGYAEVAHEVFDRMSKRESSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFT 428
Query: 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256
FPRVLKAC G+G +++GE +H D V+ GFG+D VLNALVDMYAKCGDIVKAR VFD I
Sbjct: 429 FPRVLKACGGIGSVQIGEAIHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIP 488
Query: 257 NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG 316
NKD +S+NSMLTGY+HHGLL EA DIFR M+ NG DPD VAISS+LA + G Q+HG
Sbjct: 489 NKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIDPDKVAISSVLARVLSFKHGRQLHG 548
Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI 376
WV+RRG+EW+L +AN+LIV+YSK G+L QAC++FD M ++D VSWN+II AHS+D
Sbjct: 549 WVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSRDSNGFK 608
Query: 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436
YFEQM+ PD +TFVS+LS CA+ G V+ GERLFS+M ++YGI+P++EHYACMVNLY
Sbjct: 609 YFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKMEHYACMVNLY 668
Query: 437 GRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496
GRAG+++EAYSMIV++MEFEA P VWGALLYACYLHGN +GE +AQ+LFELEPDNEHNF
Sbjct: 669 GRAGMMEEAYSMIVQEMEFEAGPTVWGALLYACYLHGNTDIGEVSAQRLFELEPDNEHNF 728
Query: 497 ELLIKIYGNAGRLDDVERVERMLVDRGLE 525
ELL++IY A R +DVERV +MLVDRGLE
Sbjct: 729 ELLMRIYSKAKRAEDVERVRQMLVDRGLE 757
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234984|ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g25270, chloroplastic; Flags: Precursor gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana] gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana] gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/501 (63%), Positives = 400/501 (79%), Gaps = 1/501 (0%)
Query: 26 RSRKQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQN 85
R +Q +Q +Q N T S+ K SPTPLL +++ +T+L+ALDS+I DLE+S Q
Sbjct: 26 RHHQQLKQHRQNQYNNNGFTSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQK 85
Query: 86 GITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
GI++ + E FASLLETCY L+A++HG+++H LIP LLR N GISSKL+RLYA+ G +
Sbjct: 86 GISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEV 145
Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
AH+VFD+MS R + F WNSLISGYAELG+YEDA+ALYFQM E+GV+PD+FTFPRVLKAC
Sbjct: 146 AHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKAC 205
Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
G+G +++GE +H D V+ GFG+D +VLNALV MYAKCGDIVKAR VFD I +KD +S+N
Sbjct: 206 GGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWN 265
Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324
SMLTGY+HHGLL EA DIFR M+ NG +PD VAISS+LA + G Q+HGWV+RRG+E
Sbjct: 266 SMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGME 325
Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERD 384
W+L +AN+LIV+YSK G+L QAC++FD M ++D VSWN+II AHSK+ L YFEQM R
Sbjct: 326 WELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRA 385
Query: 385 GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444
PD +TFVS+LS CA+ G V+ GERLFS+M ++YGI P++EHYACMVNLYGRAG+++E
Sbjct: 386 NAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEE 445
Query: 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504
AYSMIV++M EA P VWGALLYACYLHGN +GE AAQ+LFELEPDNEHNFELLI+IY
Sbjct: 446 AYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYS 505
Query: 505 NAGRLDDVERVERMLVDRGLE 525
A R +DVERV +M+VDRGLE
Sbjct: 506 KAKRAEDVERVRQMMVDRGLE 526
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/487 (65%), Positives = 390/487 (80%)
Query: 38 ISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASL 97
+ + + +T S+PKSSPTPLL + K F ++K+QALD+++ DLE+S+ NG+ + E F+SL
Sbjct: 1 MGKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSL 60
Query: 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
LE CYQL+A+ HGI++HRLIPTNLLR+N GISSKLLRLYA+FG +++AHQVFD+M NR
Sbjct: 61 LELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNF 120
Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
AF WNSLISGYAELG YEDA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE VH
Sbjct: 121 SAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVH 180
Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
VR GF D FVLNALVDMY+KCG IV+AR VFD+I KD++S+NSMLTGY HGL
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHF 240
Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
EA DIF MI G++PD VA+S++L+N S ++ +HGWV+R GVEW+L IANSLIV+Y
Sbjct: 241 EALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMY 300
Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
+K GKL++A WLF MPQKD+VSWNSII AH EAL YFE ME GV PD +TFVSLL
Sbjct: 301 AKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLL 360
Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
S CAHLG VK G +L+ +M KYGI P +EHYACMVNLYGRAG+I+EAY +I + ME EA
Sbjct: 361 STCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEA 420
Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
P +WGALLYACYLH +V + E AA++LFELEPDNE NFELL+KIYGNAGR +D +RV+
Sbjct: 421 GPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKL 480
Query: 518 MLVDRGL 524
M+ +RGL
Sbjct: 481 MMAERGL 487
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/487 (65%), Positives = 389/487 (79%)
Query: 38 ISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASL 97
+ + + +T S+PKSSPTPLL + K F ++K+QALD+++ DLE+S+ NG+ + E F+SL
Sbjct: 1 MGKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSL 60
Query: 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157
LE CYQL+A+ HGI++HRLIPTNLLR+N GISSKLLRLYA+FG +++AHQVFD+M NR
Sbjct: 61 LELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNF 120
Query: 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217
AF WNSLISGYAELG YEDA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE VH
Sbjct: 121 SAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVH 180
Query: 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277
VR GF D FVLNALVDMY+KCG IV+AR VFD+I KD++S+NSMLTGY HGL
Sbjct: 181 RHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHF 240
Query: 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337
EA DIF MI G++PD VA+S++L+N S ++ +HGWV+R GVEW+L IANSLIV+Y
Sbjct: 241 EALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMY 300
Query: 338 SKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL 397
+K GKL++A WLF MPQKD+VSWNSII AH EAL YFE ME GV PD +TFVSLL
Sbjct: 301 AKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLL 360
Query: 398 SACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457
S CAHLG VK G L+ +M KYGI P +EHYACMVNLYGRAG+I+EAY +I + ME EA
Sbjct: 361 STCAHLGLVKEGXELYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEA 420
Query: 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517
P +WGALLYACYLH +V + E AA++LFELEPDNE NFELL+KIYGNAGR +D +RV+
Sbjct: 421 GPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKL 480
Query: 518 MLVDRGL 524
M+ +RGL
Sbjct: 481 MMAERGL 487
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136754|ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/442 (70%), Positives = 364/442 (82%)
Query: 83 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
++ GI + T+ F+SLLETCY+L A+E G+K+HRLIP NLLR+N GISSKL+RLY++ G +
Sbjct: 1 MEKGIRIDTQIFSSLLETCYRLNAIELGVKIHRLIPINLLRRNAGISSKLVRLYSSCGDV 60
Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
+ AHQVFD+M R AFPWNSLI+GY E G YEDA+ALYFQMEEEGVEPDQFTFPRVLK
Sbjct: 61 EVAHQVFDEMFKRGESAFPWNSLIAGYTESGLYEDAMALYFQMEEEGVEPDQFTFPRVLK 120
Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
AC G+GLIR+GE VH D VR GF DGFVLNALVDMYAKCGDIVKAR +FD+I KD IS
Sbjct: 121 ACGGIGLIRIGEAVHRDLVRLGFANDGFVLNALVDMYAKCGDIVKARRIFDKIDCKDSIS 180
Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322
+NSMLTGYI HGL+ EA F M+ +G + D VA+S+ILAN S + Q+HGW++RRG
Sbjct: 181 WNSMLTGYIRHGLIAEALHTFHSMVHDGMELDSVAVSTILANVSSFEVAVQIHGWIVRRG 240
Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382
+EWD IANSLI VYS KLD+A WLFDHMP+KD+VSWNSII AH KD +AL YFE ME
Sbjct: 241 MEWDFSIANSLIAVYSNGRKLDRARWLFDHMPKKDIVSWNSIISAHCKDLKALTYFELME 300
Query: 383 RDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442
RDG LPD +TFVSLLSACAHLG VK GERLFS+M KY I+P +EHYACMVNLYGRAGLI
Sbjct: 301 RDGALPDKITFVSLLSACAHLGLVKDGERLFSLMKAKYQINPIMEHYACMVNLYGRAGLI 360
Query: 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502
+EAY++I ++MEFEA P VWGALLY+CYLH NV GE AAQ LF+LEPDNEHNFELL+KI
Sbjct: 361 NEAYAIIRDQMEFEAGPTVWGALLYSCYLHRNVDTGEIAAQYLFDLEPDNEHNFELLMKI 420
Query: 503 YGNAGRLDDVERVERMLVDRGL 524
Y NAGRL+D ERV +M+VDRGL
Sbjct: 421 YDNAGRLEDAERVRKMMVDRGL 442
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/499 (62%), Positives = 400/499 (80%), Gaps = 6/499 (1%)
Query: 29 KQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT 88
KQRR + Q+ RN + S+PK TPLL + + PKTKL+AL+ +++DLE+SV+ GI
Sbjct: 33 KQRRLESQE-RRNGL----SFPKPKSTPLLIHHRPHPKTKLEALEQVVKDLEASVEKGIK 87
Query: 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
+ E +ASLLETCY+ +A+ HGI++HRLIPT+LL KN GISSKLLRLYA+ G +D+AH +
Sbjct: 88 IDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDL 147
Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
FDQM+ R AFPWNSLISGYA++G Y++AIALYFQM EEGVE D FTFPRVLK CAG+G
Sbjct: 148 FDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIG 207
Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
++VGE+VH A+R GF DGF+LNALVDMY+KCGDIVKAR VFD++ ++D +S+NSMLT
Sbjct: 208 SVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLT 267
Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
Y+HHGL V+A +IFR M+L G +PD V+IS++L S L +G Q+HGWV+ +G EW+L
Sbjct: 268 AYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQGHEWNLS 327
Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388
IANSLI++YS G+L++A W+F+ MP++DVVSWNSII AH K EAL +FEQME GV P
Sbjct: 328 IANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHCKRREALAFFEQMEGAGVQP 387
Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
D +TFVS+LSACA+LG +K GERLF++M KY I P +EHY CMVNLYGRAGLI +AYS+
Sbjct: 388 DKITFVSILSACAYLGLLKDGERLFALMCGKYKIKPIMEHYGCMVNLYGRAGLIKKAYSI 447
Query: 449 IVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507
IV+ + EA+ P +WGALLYAC++HG+ +GE AA LF+LEPDNEHNF LL++IY NAG
Sbjct: 448 IVDGIGTEAAGPTLWGALLYACFMHGDATIGEIAANWLFDLEPDNEHNFVLLMRIYENAG 507
Query: 508 RLDDVERVERMLVDRGLEF 526
RL+D+ERV MLVDRGL++
Sbjct: 508 RLEDMERVRMMLVDRGLDY 526
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255641788|gb|ACU21163.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 265/433 (61%), Positives = 344/433 (79%), Gaps = 5/433 (1%)
Query: 29 KQRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT 88
KQRR + Q+ RN + S+PK TPLL + + PKTKL+AL+ +++DLE+SV+ GI
Sbjct: 33 KQRRLESQE-RRNGL----SFPKPKSTPLLIHHRPHPKTKLEALEQVVKDLEASVEKGIK 87
Query: 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148
+ E +ASLLETCY+ +A+ HGI++HRLIPT+LL KN GISSKLLRLYA+ G +D+AH +
Sbjct: 88 IDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDL 147
Query: 149 FDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208
FDQM+ R AFPWNSLISGYA++G Y++AIALYFQM EEGVE D FTFPRVLK CAG+G
Sbjct: 148 FDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIG 207
Query: 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLT 268
++VGE+VH A+R GF DGF+LNALVDMY+KCGDIVKAR VFD++ ++D +S+NSMLT
Sbjct: 208 SVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLT 267
Query: 269 GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLC 328
Y+HHGL V+A +IFR M+L G +PD V+IS++L S L +G Q+HGWV+ +G EW+L
Sbjct: 268 AYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQGHEWNLS 327
Query: 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388
IANSLI++YS G+L++A W+F+ MP++DVVSWNSII AH K EAL +FEQME GV P
Sbjct: 328 IANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIISAHCKRREALAFFEQMEGAGVQP 387
Query: 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSM 448
D +TFVS+LSACA+LG +K GERLF++M KY I P +EHY CMVNLYGRAGLI +AYS+
Sbjct: 388 DKITFVSILSACAYLGLLKDGERLFALMCGKYKIKPIMEHYGCMVNLYGRAGLIKKAYSI 447
Query: 449 IVEKMEFEASPVV 461
IV+ + EA+ V+
Sbjct: 448 IVDGIGTEAAGVL 460
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539733|ref|XP_002510931.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550046|gb|EEF51533.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/406 (61%), Positives = 317/406 (78%), Gaps = 3/406 (0%)
Query: 8 PSSFHTSLVIIHCGSKNKRSRKQR---RQKQQQISRNRITTFSSYPKSSPTPLLTNQKAF 64
P HT +I+H S +K+ RKQR R ++ +NR S+P SPTPLL N +
Sbjct: 7 PQILHTPSMILHYASSSKKRRKQRQLNRIQKNDFYQNRNANGLSFPVPSPTPLLINLNTY 66
Query: 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRK 124
+TKLQALD +I+DLESS+ GI + T+ +SLLETCY+L +++HG+++HRLIPT++LRK
Sbjct: 67 TQTKLQALDDVIKDLESSIGKGIKIDTQIISSLLETCYRLNSIDHGMRIHRLIPTSILRK 126
Query: 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQ 184
N G+SSKLLRLYA+ G +DEAHQ+FD+MSNR AF WNSLI+GY+ELG YEDAIALYFQ
Sbjct: 127 NTGVSSKLLRLYASCGYMDEAHQMFDEMSNRDESAFAWNSLIAGYSELGLYEDAIALYFQ 186
Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
M+EE VEPD+FTFPRVLKAC GLGLI+VGE VH D +R GF D F NALVDMYAKCGD
Sbjct: 187 MDEEYVEPDEFTFPRVLKACGGLGLIQVGEAVHRDLIRLGFANDRFASNALVDMYAKCGD 246
Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304
IVKAR++F+++ +KD +S+NSMLTGY+ HGL++EAF R M+ +G + D VAISS+LAN
Sbjct: 247 IVKARSIFEKMASKDSVSWNSMLTGYVRHGLIIEAFHTGRRMLQDGLELDSVAISSLLAN 306
Query: 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364
S ++G Q+HGW+LRRG++WDL IANSLIV+YS +GKL Q WLFD+M ++DVVSWNSI
Sbjct: 307 VSSFKLGVQIHGWILRRGMQWDLSIANSLIVMYSSNGKLVQTRWLFDNMQERDVVSWNSI 366
Query: 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGE 410
I AH KD + L YFE+ME G PD++TFVS LSACAHLG V+ GE
Sbjct: 367 ISAHCKDPQVLAYFERMENSGAFPDNITFVSALSACAHLGLVRDGE 412
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|27573363|gb|AAO20081.1| hypothetical protein [Oryza sativa Japonica Group] gi|108712148|gb|ABF99943.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 201/501 (40%), Positives = 298/501 (59%), Gaps = 10/501 (1%)
Query: 30 QRRQKQQQISRNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV 89
QRR++ +R R +P S LT + A P LD ++ DL S + +
Sbjct: 15 QRRRRSTAPARRRGPPSRRHPHSGAA--LTLRAAPPPATQPTLDRVLSDLGSHPR--LLT 70
Query: 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVF 149
+ L + +L RL+ +LLR+ ++ +LL L+A+ GL+ AH +F
Sbjct: 71 PDLLDSLLAALPLHPSPRRNLARLRRLLSVSLLRRYPALARRLLHLHASLGLVSYAHHLF 130
Query: 150 DQMSNRTAF--AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
D + A AFPWN LI+GYA LG +EDA+ALY QMEEE V D+FTF L+ACAG+
Sbjct: 131 DHLLPARAREDAFPWNCLIAGYARLGRHEDALALYLQMEEETVPRDRFTFTSALQACAGV 190
Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
G + +G +H D VR G D V +ALVD+YA GD+ +A VFD + ++D +S+N ML
Sbjct: 191 GSVELGHAIHRDVVRAGLASDVPVCDALVDLYATFGDVRRALQVFDAMPDRDGVSWNIML 250
Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL----RIGAQVHGWVLRRGV 323
G + HGL +A +++R M+ +PD + +S++L+ L+ + G ++H W +R G+
Sbjct: 251 AGCLRHGLSQQALELWRRMLREEHEPDSITLSTMLSILPLVCDNGKWGLEIHAWAIRHGL 310
Query: 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383
E +L +AN+LI +YS + A +F+ M +D+ SWN+II AH +D+ L+ F +M
Sbjct: 311 ETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQSWNAIISAHLQDYRILMIFRRMVD 370
Query: 384 DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLID 443
G+ PD TF + SAC +LG V+ G RLFS M +Y I P +E Y CMVN+ G+AG+I
Sbjct: 371 SGMRPDETTFALVFSACDNLGLVEGGMRLFSEMENEYRIPPTMEQYTCMVNMLGKAGMIH 430
Query: 444 EAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503
EAY + ++ + V ALL AC +H N +GE A++L ELEPDNEHNF L++IY
Sbjct: 431 EAYEFMSKRKPLDNEQTVLRALLQACLMHRNARVGEIIAKRLIELEPDNEHNFVKLMEIY 490
Query: 504 GNAGRLDDVERVERMLVDRGL 524
N GRL + E+V++ + DRGL
Sbjct: 491 QNVGRLVEAEKVKKTMRDRGL 511
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 526 | ||||||
| TAIR|locus:2122634 | 527 | OTP70 "AT4G25270" [Arabidopsis | 0.914 | 0.912 | 0.649 | 2.6e-173 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.819 | 0.656 | 0.381 | 3.4e-77 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.743 | 0.527 | 0.380 | 8.4e-74 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.830 | 0.501 | 0.371 | 7.5e-73 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.834 | 0.533 | 0.353 | 6.3e-69 | |
| TAIR|locus:2019130 | 895 | OTP87 "organelle transcript pr | 0.825 | 0.484 | 0.351 | 8e-69 | |
| TAIR|locus:2090990 | 710 | AT3G14330 [Arabidopsis thalian | 0.866 | 0.642 | 0.342 | 1e-68 | |
| TAIR|locus:2175653 | 677 | AT5G39350 "AT5G39350" [Arabido | 0.834 | 0.648 | 0.360 | 9.2e-68 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.887 | 0.741 | 0.317 | 1.9e-67 | |
| TAIR|locus:2064828 | 860 | AT2G40720 [Arabidopsis thalian | 0.830 | 0.508 | 0.342 | 2.4e-67 |
| TAIR|locus:2122634 OTP70 "AT4G25270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1684 (597.9 bits), Expect = 2.6e-173, P = 2.6e-173
Identities = 313/482 (64%), Positives = 392/482 (81%)
Query: 45 TFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITV-QTETFASLLETCYQ 103
T S+ K SPTPLL +++ +T+L+ALDS+I DLE+S Q GI++ + E FASLLETCY
Sbjct: 45 TSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQKGISLTEPEIFASLLETCYS 104
Query: 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN 163
L+A++HG+++H LIP LLR N GISSKL+RLYA+ G + AH+VFD+MS R + F WN
Sbjct: 105 LRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWN 164
Query: 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223
SLISGYAELG+YEDA+ALYFQM E+GV+PD+FTFPRVLKAC G+G +++GE +H D V+
Sbjct: 165 SLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKE 224
Query: 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283
GFG+D +VLNALV MYAKCGDIVKAR VFD I +KD +S+NSMLTGY+HHGLL EA DIF
Sbjct: 225 GFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIF 284
Query: 284 RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
R M+ NG +PD VAISS+LA + G Q+HGWV+RRG+EW+L +AN+LIV+YSK G+L
Sbjct: 285 RLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQL 344
Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403
QAC++FD M ++D VSWN+II AHSK+ L YFEQM R PD +TFVS+LS CA+
Sbjct: 345 GQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANT 404
Query: 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWG 463
G V+ GERLFS+M ++YGI P++EHYACMVNLYGRAG+++EAYSMIV++M EA P VWG
Sbjct: 405 GMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWG 464
Query: 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523
ALLYACYLHGN +GE AAQ+LFELEPDNEHNFELLI+IY A R +DVERV +M+VDRG
Sbjct: 465 ALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRG 524
Query: 524 LE 525
LE
Sbjct: 525 LE 526
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 170/446 (38%), Positives = 267/446 (59%)
Query: 92 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
+T+ L+ C ++ +++HR I N ++ +++KL+ +Y+ G +D A +VFD+
Sbjct: 78 QTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDK 137
Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----L 207
RT + WN+L G E+ + LY++M GVE D+FT+ VLKAC +
Sbjct: 138 TRKRTIYV--WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTV 195
Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
+ G+++H R G+ +++ LVDMYA+ G + A VF + ++++S+++M+
Sbjct: 196 NHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMI 255
Query: 268 TGYIHHGLLVEAFDIFRGMILNGFD--PDPVAISSIL-ANASL--LRIGAQVHGWVLRRG 322
Y +G EA FR M+ D P+ V + S+L A ASL L G +HG++LRRG
Sbjct: 256 ACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRG 315
Query: 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFE 379
++ L + ++L+ +Y + GKL+ +FD M +DVVSWNS+I + H +A+ FE
Sbjct: 316 LDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFE 375
Query: 380 QMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
+M +G P +TFVS+L AC+H G V+ G+RLF M +GI P++EHYACMV+L GRA
Sbjct: 376 EMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRA 435
Query: 440 GLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499
+DEA M V+ M E P VWG+LL +C +HGNV + E A+++LF LEP N N+ LL
Sbjct: 436 NRLDEAAKM-VQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 494
Query: 500 IKIYGNAGRLDDVERVERMLVDRGLE 525
IY A D+V+RV+++L RGL+
Sbjct: 495 ADIYAEAQMWDEVKRVKKLLEHRGLQ 520
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 153/402 (38%), Positives = 250/402 (62%)
Query: 132 LLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVE 191
L++ YA+ G I+ A ++FD++ + + WN++ISGYAE G Y++A+ L+ M + V
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVS--WNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTV 251
PD+ T V+ ACA G I +G +VHL GFG + ++NAL+D+Y+KCG++ A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 252 FDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLL 308
F+R+ KD+IS+N+++ GY H L EA +F+ M+ +G P+ V + SIL A+ +
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 309 RIGAQVHGWVLRR--GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366
IG +H ++ +R GV + SLI +Y+K G ++ A +F+ + K + SWN++I
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 367 A---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS 423
H + + F +M + G+ PD +TFV LLSAC+H G + +G +F M + Y ++
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQ 483
P++EHY CM++L G +GL EA MI ME E V+W +LL AC +HGNV +GE+ A+
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMI-NMMEMEPDGVIWCSLLKACKMHGNVELGESFAE 562
Query: 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
L ++EP+N ++ LL IY +AGR ++V + +L D+G++
Sbjct: 563 NLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 166/447 (37%), Positives = 251/447 (56%)
Query: 85 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144
+GI + T S+ C + + G +H + + + LL +Y+ G +D
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349
Query: 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204
A VF +MS+R+ ++ S+I+GYA G +A+ L+ +MEEEG+ PD +T VL C
Sbjct: 350 AKAVFREMSDRSVVSY--TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407
Query: 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264
A L+ G++VH GFD FV NAL+DMYAKCG + +A VF + KD+IS+N
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467
Query: 265 SMLTGYIHHGLLVEAFDIFRGMILNG-FDPDPVAISSIL-ANASLLRI--GAQVHGWVLR 320
+++ GY + EA +F ++ F PD ++ +L A ASL G ++HG+++R
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527
Query: 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377
G D +ANSL+ +Y+K G L A LFD + KD+VSW +I H EA+
Sbjct: 528 NGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIAL 587
Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437
F QM + G+ D ++FVSLL AC+H G V G R F++M + I P VEHYAC+V++
Sbjct: 588 FNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLA 647
Query: 438 RAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497
R G + +AY I E M +WGALL C +H +V + E A+K+FELEP+N +
Sbjct: 648 RTGDLIKAYRFI-ENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 706
Query: 498 LLIKIYGNAGRLDDVERVERMLVDRGL 524
L+ IY A + + V+R+ + + RGL
Sbjct: 707 LMANIYAEAEKWEQVKRLRKRIGQRGL 733
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 160/453 (35%), Positives = 258/453 (56%)
Query: 82 SVQNGI-TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
++ NG+ + + T SLL C + G+ +H + L +S+KL+ LYA FG
Sbjct: 237 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG 296
Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPR 199
+ + +VFD+M R + WNS+I Y EL E AI+L+ +M ++PD T
Sbjct: 297 RLRDCQKVFDRMYVRDLIS--WNSIIKAY-ELNEQPLRAISLFQEMRLSRIQPDCLTLIS 353
Query: 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNK 258
+ + LG IR V +R G+ + + NA+V MYAK G + AR VF+ + N
Sbjct: 354 LASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNT 413
Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF----DPDPVAISSILANASLLRIGAQV 314
D+IS+N++++GY +G EA +++ M G V++ + A LR G ++
Sbjct: 414 DVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKL 473
Query: 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII--HA-HSKD 371
HG +L+ G+ D+ + SL +Y K G+L+ A LF +P+ + V WN++I H H
Sbjct: 474 HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHG 533
Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
+A++ F++M +GV PDH+TFV+LLSAC+H G V G+ F +M YGI+P ++HY C
Sbjct: 534 EKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC 593
Query: 432 MVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491
MV++YGRAG ++ A I + M + +WGALL AC +HGNV +G+ A++ LFE+EP+
Sbjct: 594 MVDMYGRAGQLETALKFI-KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPE 652
Query: 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
+ LL +Y +AG+ + V+ + + +GL
Sbjct: 653 HVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685
|
|
| TAIR|locus:2019130 OTP87 "organelle transcript processing 87" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 159/452 (35%), Positives = 250/452 (55%)
Query: 83 VQNGITVQTETFASLLET--CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140
+Q G+ + SLL C L HG L + +L + S L LY+ G
Sbjct: 445 LQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLT-----VGSSLFTLYSKCG 499
Query: 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200
++E++++F + + W S+ISG+ E G +AI L+ +M ++G PD+ T V
Sbjct: 500 SLEESYKLFQGIPFKDNAC--WASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAV 557
Query: 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL-NALVDMYAKCGDIVKARTVFDRIGNKD 259
L C+ + G+++H +R G G L +ALV+MY+KCG + AR V+DR+ D
Sbjct: 558 LTVCSSHPSLPRGKEIHGYTLRAGID-KGMDLGSALVNMYSKCGSLKLARQVYDRLPELD 616
Query: 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL---RIGAQVHG 316
+S +S+++GY HGL+ + F +FR M+++GF D AISSIL A+L +GAQVH
Sbjct: 617 PVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHA 676
Query: 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHE 373
++ + G+ + + +SL+ +YSK G +D C F + D+++W ++I + H K +E
Sbjct: 677 YITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANE 736
Query: 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433
AL + M+ G PD +TFV +LSAC+H G V+ + MV+ YGI P HY CMV
Sbjct: 737 ALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMV 796
Query: 434 NLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493
+ GR+G + EA S I M + +VWG LL AC +HG V +G+ AA+K ELEP +
Sbjct: 797 DALGRSGRLREAESFI-NNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDA 855
Query: 494 HNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
+ L I G D+VE +++ G++
Sbjct: 856 GAYISLSNILAEVGEWDEVEETRKLMKGTGVQ 887
|
|
| TAIR|locus:2090990 AT3G14330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 160/467 (34%), Positives = 261/467 (55%)
Query: 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKN 125
TKL ++I++ SS N T E + LL C K++ HGIK+ LI N LR N
Sbjct: 109 TKLDEAVTLIENSSSSPSNLST--PEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHN 166
Query: 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQ 184
+ SKL+ L++ +D A ++FD +++ + W ++ GY+ G DA+ +Y
Sbjct: 167 PKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVD 226
Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
M +EP F+ LKAC L +RVG +H V+ D V N L+ +Y + G
Sbjct: 227 MLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGL 286
Query: 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI--LNGFD-PDPVAISSI 301
AR VFD + ++++++NS+++ + E F++FR M + GF I
Sbjct: 287 FDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPA 346
Query: 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361
+ + L G ++H +L+ + D+ + NSL+ +Y K G+++ + +FD M KD+ SW
Sbjct: 347 CSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASW 406
Query: 362 NSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418
N +++ ++ + E + FE M GV PD +TFV+LLS C+ G + G LF M
Sbjct: 407 NIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKT 466
Query: 419 KYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMG 478
++ +SP +EHYAC+V++ GRAG I EA ++E M F+ S +WG+LL +C LHGNV +G
Sbjct: 467 EFRVSPALEHYACLVDILGRAGKIKEAVK-VIETMPFKPSASIWGSLLNSCRLHGNVSVG 525
Query: 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525
E AA++LF LEP N N+ ++ IY +A D+V+++ M+ RG++
Sbjct: 526 EIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVK 572
|
|
| TAIR|locus:2175653 AT5G39350 "AT5G39350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 163/452 (36%), Positives = 242/452 (53%)
Query: 83 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142
V + + T S+L C LK +E G +H+L+ L + + L+ +Y G +
Sbjct: 210 VNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269
Query: 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK 202
DEA VFD+M R W +I+GY E G+ E+A+ L M+ EGV P+ T ++
Sbjct: 270 DEARFVFDRMERRDVIT--WTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVS 327
Query: 203 ACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLIS 262
C + G+ +H AVR D + +L+ MYAKC + VF
Sbjct: 328 VCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP 387
Query: 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL-ANASL--LRIGAQVHGWVL 319
+++++ G + + L+ +A +F+ M +P+ ++S+L A A+L LR +H ++
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447
Query: 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK----DVVSWNSIIHA---HSKDH 372
+ G L A L+ VYSK G L+ A +F+ + +K DVV W ++I H H
Sbjct: 448 KTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGH 507
Query: 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432
AL F +M R GV P+ +TF S L+AC+H G V+ G LF M+E Y R HY C+
Sbjct: 508 NALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCI 567
Query: 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492
V+L GRAG +DEAY++I + FE + VWGALL AC H NV +GE AA KLFELEP+N
Sbjct: 568 VDLLGRAGRLDEAYNLITT-IPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPEN 626
Query: 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524
N+ LL IY GR D+E+V M+ + GL
Sbjct: 627 TGNYVLLANIYAALGRWKDMEKVRSMMENVGL 658
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 154/485 (31%), Positives = 273/485 (56%)
Query: 48 SYPKSSPTPLLTNQKAFPKTKLQA-LDSIIQDLESSVQNGITVQTETFASLLETCYQLKA 106
SY + T LL+ F + Q L ++ ++S +G+ + T++ L++ C +A
Sbjct: 20 SYSSTDQTLLLSE---FTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRA 76
Query: 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLI 166
V G + R + N R + + L+ +Y F L+++AHQ+FDQM R + W ++I
Sbjct: 77 VHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVIS--WTTMI 134
Query: 167 SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226
S Y++ ++ A+ L M + V P+ +T+ VL++C G+ +R+ +H ++ G
Sbjct: 135 SAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLE 191
Query: 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286
D FV +AL+D++AK G+ A +VFD + D I +NS++ G+ + A ++F+ M
Sbjct: 192 SDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251
Query: 287 ILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343
GF + ++S+L +LL +G Q H +++ + DL + N+L+ +Y K G L
Sbjct: 252 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSL 309
Query: 344 DQACWLFDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSAC 400
+ A +F+ M ++DV++W+++I +++ EAL FE+M+ G P+++T V +L AC
Sbjct: 310 EDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFAC 369
Query: 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV 460
+H G ++ G F M + YGI P EHY CM++L G+AG +D+A ++ E ME E V
Sbjct: 370 SHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNE-MECEPDAV 428
Query: 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520
W LL AC + N+ + E AA+K+ L+P++ + LL IY N+ + D VE + +
Sbjct: 429 TWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMR 488
Query: 521 DRGLE 525
DRG++
Sbjct: 489 DRGIK 493
|
|
| TAIR|locus:2064828 AT2G40720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 154/450 (34%), Positives = 256/450 (56%)
Query: 84 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143
Q + + T ++++ C L +G +H + ++ I S LL LY+ G
Sbjct: 366 QKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425
Query: 144 EAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM--EEEGVEPDQFTFPRVL 201
+A+ VF M + A W SLISG + G++++A+ ++ M +++ ++PD V
Sbjct: 426 DAYLVFKSMEEKDMVA--WGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVT 483
Query: 202 KACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI 261
ACAGL +R G +VH ++ G + FV ++L+D+Y+KCG A VF + ++++
Sbjct: 484 NACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMV 543
Query: 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL----ANASLLRIGAQVHGW 317
++NSM++ Y + L + D+F M+ G PD V+I+S+L + ASLL+ G +HG+
Sbjct: 544 AWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLK-GKSLHGY 602
Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE---A 374
LR G+ D + N+LI +Y K G A +F M K +++WN +I+ + + A
Sbjct: 603 TLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITA 662
Query: 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434
L F++M++ G PD +TF+SL+SAC H G V+ G+ +F M + YGI P +EHYA MV+
Sbjct: 663 LSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVD 722
Query: 435 LYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494
L GRAGL++EAYS I + M EA +W LL A H NV +G +A+KL +EP+
Sbjct: 723 LLGRAGLLEEAYSFI-KAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGS 781
Query: 495 NFELLIKIYGNAGRLDDVERVERMLVDRGL 524
+ LI +Y AG ++ ++ ++ ++GL
Sbjct: 782 TYVQLINLYMEAGLKNEAAKLLGLMKEKGL 811
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SB36 | PP337_ARATH | No assigned EC number | 0.6347 | 0.9505 | 0.9487 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 526 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-105 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-95 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-81 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-04 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 331 bits (849), Expect = e-105
Identities = 155/443 (34%), Positives = 264/443 (59%), Gaps = 9/443 (2%)
Query: 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147
T+ T+ +L+E C LK++ ++ + ++ ++ + +++L ++ G++ +A +
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179
Query: 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207
+FD+M R + W ++I G + G Y +A AL+ +M E+G + + TF +L+A AGL
Sbjct: 180 LFDEMPERNLAS--WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237
Query: 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSML 267
G R G+++H ++ G D FV AL+DMY+KCGDI AR VFD + K +++NSML
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297
Query: 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVE 324
GY HG EA ++ M +G D S ++ + +LL Q H ++R G
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQM 381
D+ +L+ +YSK G+++ A +FD MP+K+++SWN++I H + +A+ FE+M
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL 441
+GV P+H+TF+++LSAC + G + G +F M E + I PR HYACM+ L GR GL
Sbjct: 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477
Query: 442 IDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501
+DEAY+MI + F+ + +W ALL AC +H N+ +G AA+KL+ + P+ +N+ +L+
Sbjct: 478 LDEAYAMI-RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN 536
Query: 502 IYGNAGRLDDVERVERMLVDRGL 524
+Y ++GR + +V L +GL
Sbjct: 537 LYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 308 bits (790), Expect = 2e-95
Identities = 168/439 (38%), Positives = 249/439 (56%), Gaps = 11/439 (2%)
Query: 93 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
T S++ C L G ++H + + + + L+++Y + G EA +VF +M
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
+ A + W ++ISGY + G + A+ Y ME++ V PD+ T VL ACA LG + V
Sbjct: 350 ETKDAVS--WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
G K+H A R G V NAL++MY+KC I KA VF I KD+IS+ S++ G
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467
Query: 273 HGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCI 329
+ EA FR M+L P+ V + + L A L G ++H VLR G+ +D +
Sbjct: 468 NNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526
Query: 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH---AHSKDHEALIYFEQMERDGV 386
N+L+ +Y + G+++ A W + +KDVVSWN ++ AH K A+ F +M GV
Sbjct: 527 PNALLDLYVRCGRMNYA-WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585
Query: 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446
PD +TF+SLL AC+ G V G F M EKY I+P ++HYAC+V+L GRAG + EAY
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645
Query: 447 SMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506
+ I KM P VWGALL AC +H +V +GE AAQ +FEL+P++ + LL +Y +A
Sbjct: 646 NFI-NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704
Query: 507 GRLDDVERVERMLVDRGLE 525
G+ D+V RV + + + GL
Sbjct: 705 GKWDEVARVRKTMRENGLT 723
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 2e-81
Identities = 138/399 (34%), Positives = 224/399 (56%), Gaps = 15/399 (3%)
Query: 59 TNQKAFPKTKLQAL------DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIK 112
++ ++L+AL + ++ LES + + V + + +L C +AVE G +
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSR 107
Query: 113 LHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAEL 172
+ ++ + + +L ++ FG + A VF +M R F+ WN L+ GYA+
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS--WNVLVGGYAKA 165
Query: 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232
G +++A+ LY +M GV PD +TFP VL+ C G+ + G +VH VRFGF D V+
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292
NAL+ MY KCGD+V AR VFDR+ +D IS+N+M++GY +G +E ++F M D
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 293 PDPVAISSILANASLL---RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWL 349
PD + I+S+++ LL R+G ++HG+V++ G D+ + NSLI +Y G +A +
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 350 FDHMPQKDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406
F M KD VSW ++I + K+ +AL + ME+D V PD +T S+LSACA LG +
Sbjct: 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEA 445
VG +L + E+ G+ V ++ +Y + ID+A
Sbjct: 406 DVGVKLHE-LAERKGLISYVVVANALIEMYSKCKCIDKA 443
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 86 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI----SSKLLRLYATFGL 141
G+++ TF+ ++ +L +EH + H L+R + ++ L+ LY+ +G
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAH----AGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201
+++A VFD+M + + WN+LI+GY G A+ ++ +M EGV P+ TF VL
Sbjct: 376 MEDARNVFDRMPRKNLIS--WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 202 KACAGLGLIRVGEKVHL 218
AC GL G ++
Sbjct: 434 SACRYSGLSEQGWEIFQ 450
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 356 KDVVSWNSIIHAHSKD---HEALIYFEQMERDGVLPDHLTFVSLLSACAH 402
DVV++N++I + K EAL F +M++ G+ P+ T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205
+N+LI GY + G+ E+A+ L+ +M++ G++P+ +T+ ++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 84/370 (22%), Positives = 153/370 (41%), Gaps = 37/370 (10%)
Query: 93 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152
TF L+ C + ++ +++ RL+ L+ + + + L+ A G +D +VF +M
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 153 SNR--TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-- 208
N A + +LI G A G+ A Y M + V+PD+ F ++ AC G
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 209 ------LIRVGEKVHL---DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD 259
L + + H D + G AL+ A G + +A+ V+ I +
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVG---------ALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 260 LISYNSMLTGYIHH----GLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGA 312
+ + T ++ G A I+ M G PD V S+++ +A L
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP----QKDVVSWNSIIHAH 368
++ ++G++ +SL+ S +A L++ + + V + N++I A
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 369 SKDHE---ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425
+ ++ AL +M+R G+ P+ +T+ LL A VG L S E GI P
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPN 788
Query: 426 VEHYACMVNL 435
+ C+ L
Sbjct: 789 LVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 258 KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302
D+++YN+++ GY G + EA +F M G P+ S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 8e-07
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193
+N+LI G + G E+A+ L+ +M+E G+EPD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 71/333 (21%), Positives = 139/333 (41%), Gaps = 49/333 (14%)
Query: 95 ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD--QM 152
A + C + +AV+ + +LI L + L+ + A+ ID A +V Q
Sbjct: 410 AKFFKACKKQRAVKEAFRFAKLIRNPTLST----FNMLMSVCASSQDIDGALRVLRLVQE 465
Query: 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212
+ A + +LIS A+ G+ + ++ +M GVE + TF ++ CA R
Sbjct: 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA-----RA 520
Query: 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIH 272
G+ V FG G M +K ++ R VF N++++
Sbjct: 521 GQ------VAKAFGAYGI-------MRSK--NVKPDRVVF-----------NALISACGQ 554
Query: 273 HGLLVEAFDIFRGMILNG--FDPDPVAISSIL---ANASLLRIGAQVHGWVLRRGVEWDL 327
G + AFD+ M DPD + + +++ ANA + +V+ + ++
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDV----VSWNSIIHA--HSKD-HEALIYFEQ 380
+ + S+ G D A ++D M +K V V +++++ H+ D +A +
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 381 MERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413
+ G+ +++ SL+ AC++ + K L+
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGV 190
+NSLISGY + G+ E+A+ L+ +M+E+GV
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294
++YN+++ G G + EA ++F+ M G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291
++YNS+++GY G L EA ++F+ M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 1e-04
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEP 192
+N+L+ A+ G+ + A+A+ +M+ G++P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQK----DVVSWNSIIHAHSK 370
N+LI Y K GK+++A LF+ M ++ +V +++ +I K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 85/373 (22%), Positives = 138/373 (36%), Gaps = 76/373 (20%)
Query: 112 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL------ 165
K RL LRK ++ L L + +A + NSL
Sbjct: 304 KSSRLPNVKGLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGG 363
Query: 166 ----------ISGYAEL---GEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIR 211
I Y L G +D I L ME+ G ++ D+ + KAC
Sbjct: 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR--- 420
Query: 212 VGEKVHLDAVRFGFGFDGFVLNA-------LVDMYAKCGDIVKARTVFDRI---GNK-DL 260
AV+ F F + N L+ + A DI A V + G K D
Sbjct: 421 --------AVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC 472
Query: 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL---ANASLLRIGAQVHGW 317
Y ++++ G + F++F M+ G + + +++ A A + +G
Sbjct: 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532
Query: 318 VLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377
+ + V+ D + N+LI + G +D+A FD V++ + +A
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRA---FD------VLA----------EMKA--- 570
Query: 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV--MVEKYGISPRVEHYACMVNL 435
E + PDH+T +L+ ACA+ G V +R V M+ +Y I E Y VN
Sbjct: 571 ----ETHPIDPDHITVGALMKACANAGQV---DRAKEVYQMIHEYNIKGTPEVYTIAVNS 623
Query: 436 YGRAGLIDEAYSM 448
+ G D A S+
Sbjct: 624 CSQKGDWDFALSI 636
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 526 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.07 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.84 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.51 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.51 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.48 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.42 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.32 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.29 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.29 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.21 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.09 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.04 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.8 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.79 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.66 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.63 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.62 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.53 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.52 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.48 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.45 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.43 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.37 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.1 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.09 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.06 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.98 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.97 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.9 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.76 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.39 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.37 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.31 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.2 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.09 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.74 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.69 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.64 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.61 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.4 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 95.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.84 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.74 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.72 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.69 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.68 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.48 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.43 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.33 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.25 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.15 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.11 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.79 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.69 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.47 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.46 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.38 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.33 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.3 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.2 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.95 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.81 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.32 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.26 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.13 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.11 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.08 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.99 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.51 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.21 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.19 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.11 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.09 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.96 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.87 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.53 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.44 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 90.22 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.01 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.86 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.68 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.65 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.37 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.14 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.96 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.82 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.64 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.55 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.01 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.8 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.77 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.54 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.09 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.71 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 86.69 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 86.38 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.69 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.31 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.21 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.15 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.65 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.24 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.15 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.15 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 84.13 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 83.6 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.45 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.24 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.02 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 82.68 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 82.31 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.99 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.77 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.3 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.62 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 80.48 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.31 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.16 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.09 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=590.60 Aligned_cols=517 Identities=34% Similarity=0.560 Sum_probs=482.2
Q ss_pred CeeccCCCCcchhHHHHHHhhhcCchhHHHHHHHHHhhhccC------------------------ccccccCCCCCCCC
Q 009782 1 MVTILYPPSSFHTSLVIIHCGSKNKRSRKQRRQKQQQISRNR------------------------ITTFSSYPKSSPTP 56 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~p~~ 56 (526)
|...|+.|+..+|++++++|+....... ..+.+....... ...+... +.|+.
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~~~d~ 253 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLAR--GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM--PRRDC 253 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhh--HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC--CCCCc
Confidence 4456899999999999999976655443 111111111111 0111222 35677
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 009782 57 LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136 (526)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 136 (526)
.+|+.++..+++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++|+.+|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHH
Q 009782 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216 (526)
Q Consensus 137 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 216 (526)
+++|++++|.++|++|..++. .+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~--~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDA--VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCe--eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999999987655 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|..+|++|.. ++.||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 6999999
Q ss_pred HHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CC
Q 009782 297 AISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SK 370 (526)
Q Consensus 297 ~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~ 370 (526)
||+.+|.+| |+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+|++||.+| |+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999 899999999999999999999999999999999999999999999999 99999999999994 77
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~- 648 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI- 648 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH-
Confidence 7999999999999999999999999999999999999999999999966799999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 451 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
+.|+..||..+|++|+.+|...|+.+.++...+++++++|++...|..|.++|...|+|++|.++.+.|.++|+++
T Consensus 649 ~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-71 Score=566.23 Aligned_cols=465 Identities=33% Similarity=0.596 Sum_probs=450.4
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 009782 58 LTNQKAFPKTKLQALDSIIQDLESSVQNG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY 136 (526)
Q Consensus 58 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 136 (526)
.++..+..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45666667788899999999999999765 78999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHH
Q 009782 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216 (526)
Q Consensus 137 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 216 (526)
++.|++++|.++|++|..++ ..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~--~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERN--LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCC--eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999998754 4999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 217 HLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
+..+.+.|+.||..+|++|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CC
Q 009782 297 AISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SK 370 (526)
Q Consensus 297 ~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~ 370 (526)
||+.++.+| |+++.|.+++..+.+.|+.||..++++++++|+++|++++|.++|++|.++|..+||+||.+| |+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 999999999 899999999999999999999999999999999999999999999999999999999999995 67
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~- 485 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI- 485 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH-
Confidence 7999999999999999999999999999999999999999999999987799999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 451 EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 451 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
+.++..|+..+|++++.+|...|+++.|..++++++++.|++..+|..|+.+|.+.|++++|.+++++|.++|++
T Consensus 486 ~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=565.56 Aligned_cols=516 Identities=27% Similarity=0.416 Sum_probs=468.7
Q ss_pred eeccCCCCcchhHHHHHHhhhcCchhH-HHHHHHHHhh-hccC--------------------ccccccCCCCCCCCccc
Q 009782 2 VTILYPPSSFHTSLVIIHCGSKNKRSR-KQRRQKQQQI-SRNR--------------------ITTFSSYPKSSPTPLLT 59 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~p~~~~~ 59 (526)
...|++|+..+|..++++|........ .+.+...... .... ...+... +.|+..+|
T Consensus 78 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m--~~~d~~~~ 155 (857)
T PLN03077 78 QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM--PERDLFSW 155 (857)
T ss_pred HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcC--CCCCeeEH
Confidence 446789999999999999976655443 2222111100 0000 0111222 35788899
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc
Q 009782 60 NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139 (526)
Q Consensus 60 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 139 (526)
+.++..+++.|++++|+++|+.|...|+.||..||+.++++|+..++++.+.+++..+.+.|+.|+..++++|+.+|+++
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 009782 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
|++++|.++|++|...+. .+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..
T Consensus 236 g~~~~A~~lf~~m~~~d~--~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 236 GDVVSARLVFDRMPRRDC--ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred CCHHHHHHHHhcCCCCCc--chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999999987665 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 009782 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS 299 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 299 (526)
|.+.|+.||..+||+|+.+|++.|++++|.++|++|..+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CCchH
Q 009782 300 SILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHE 373 (526)
Q Consensus 300 ~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~~~ 373 (526)
.++.+| |+++.+.++++.+.+.|..++..++++++++|++.|++++|.++|++|.++|..+|+++|.++ ++.++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 999998 899999999999999999999999999999999999999999999999999999999999994 67789
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 374 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.+|..+++.|+++|+++|++++|.++| +.+
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f-~~~ 550 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSH 550 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHH-Hhc
Confidence 9999999986 59999999999999999999999999999999988 99999999999999999999999999999 555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCC
Q 009782 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE-PDNEHNFELLIKIYGNAGRLDDVERVERMLV-DRGLEF 526 (526)
Q Consensus 454 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~ 526 (526)
.||..+|++++.+|++.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|++|. +.|+.|
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 7888999999999999999999999999988743 3346779999999999999999999999998 678765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=517.88 Aligned_cols=470 Identities=21% Similarity=0.269 Sum_probs=427.5
Q ss_pred CCCccccccCCCCchHHHHHHHHHHHHHHhhCCCC--------------------------------CChhhHHHHHHHH
Q 009782 54 PTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGIT--------------------------------VQTETFASLLETC 101 (526)
Q Consensus 54 p~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~--------------------------------~~~~~~~~ll~~~ 101 (526)
++...|...+..+++.|++++|+++|+.|.+.|+. ||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34445556666667788889999999999887753 6888999999999
Q ss_pred HccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--CCcccHHHHHHHHHhcCChHHHH
Q 009782 102 YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--AFAFPWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~ 179 (526)
++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+ |+..+|+++|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764 56799999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 009782 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR--FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN 257 (526)
Q Consensus 180 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 257 (526)
++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 67899999999999999999999999999999986
Q ss_pred ----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHH
Q 009782 258 ----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIA 330 (526)
Q Consensus 258 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 330 (526)
++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+| |+.++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 566999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred hHHHHHHHhcCChHHHHHHhccCC----CCChhHHHHHHHhc---CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 009782 331 NSLIVVYSKDGKLDQACWLFDHMP----QKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403 (526)
Q Consensus 331 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 403 (526)
+++|.+|++.|++++|.++|++|. .||..+|++||.+| |+.++|.++|++|...|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999995 59999999999995 67799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----c-------------------CChHHHHHHHHhhc--CCCCC
Q 009782 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----A-------------------GLIDEAYSMIVEKM--EFEAS 458 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~--~~~p~ 458 (526)
|++++|.+++++|.+. |+.||..+|+.++..|.+ + +..++|..+|.+++ |+.||
T Consensus 768 G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999988 999999999999876432 1 12467888885544 78999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 459 PVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 459 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
..+|+.++.+++..+..+.+..+++.+.. -.+++..+|+.|+.++.+. .++|..++++|...|+.|
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 99999999888888899888888877653 3456678899999998432 368999999999999976
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=489.07 Aligned_cols=438 Identities=16% Similarity=0.217 Sum_probs=408.6
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhcc-CCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHH
Q 009782 86 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLL-RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS 164 (526)
Q Consensus 86 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 164 (526)
...++...|..++..+++.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~ 442 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNM 442 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHH
Confidence 3456788999999999999999999999999999885 57788889999999999999999999999987 66699999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHH--cCCCCcHHHHHHHHHHh---hhhHHHHHHH
Q 009782 245 IVKARTVFDRIG----NKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL--NGFDPDPVAISSILANA---SLLRIGAQVH 315 (526)
Q Consensus 245 ~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~---~~~~~a~~~~ 315 (526)
+++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+| |++++|.+++
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999996 48999999999999999999999999999987 58999999999999998 8999999999
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC----CChhHHHHHHHhc---CCchHHHHHHHHHHHCCCCC
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ----KDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~---~~~~~a~~~~~~m~~~~~~p 388 (526)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|++++.+| ++.++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999984 8999999999995 66689999999999999999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc--CCCCCHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM--EFEASPVVWGALL 466 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~l~ 466 (526)
|..+|+.|+.+|++.|++++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|.++. +..||..+|+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999887 999999999999999999999999999995443 7899999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHccC-CCCcchHHHHHHHHHh----c-------------------CChHHHHHHHHHHHhC
Q 009782 467 YACYLHGNVCMGETAAQKLFELE-PDNEHNFELLIKIYGN----A-------------------GRLDDVERVERMLVDR 522 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 522 (526)
.+|++.|++++|.++++++.+.. .+|..+|+.++..+.+ + +..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999999854 3457779988866432 2 2346799999999999
Q ss_pred CCCC
Q 009782 523 GLEF 526 (526)
Q Consensus 523 g~~~ 526 (526)
|++|
T Consensus 842 Gi~P 845 (1060)
T PLN03218 842 GTLP 845 (1060)
T ss_pred CCCC
Confidence 9987
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-56 Score=453.07 Aligned_cols=407 Identities=25% Similarity=0.408 Sum_probs=334.6
Q ss_pred cCCCCcchhHHHHHHhhhcCchhH-HHHHHHHHh-hhccC--------------------ccccccCCCCCCCCcccccc
Q 009782 5 LYPPSSFHTSLVIIHCGSKNKRSR-KQRRQKQQQ-ISRNR--------------------ITTFSSYPKSSPTPLLTNQK 62 (526)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--------------------~~~~~~~~~~~p~~~~~~~~ 62 (526)
+.+|+..+|++++.+|+....... .+.+..... ..... ...|... +.|+..+|+.+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~~~~~~t~n~l 195 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM--PERNLASWGTI 195 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC--CCCCeeeHHHH
Confidence 367888999999999987766554 222221111 01000 0112222 34788889999
Q ss_pred CCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 63 AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
+..+++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+.+|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 143 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
++|.++|++|...+. .+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 276 ~~A~~vf~~m~~~~~--vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 276 EDARCVFDGMPEKTT--VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHHhCCCCCh--hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999987655 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 009782 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302 (526)
Q Consensus 223 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 302 (526)
.|+.||..+|++|+++|++.|++++|.++|++|.++|+.+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHh---hhhHHHHHHHHHHHH-hCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHH
Q 009782 303 ANA---SLLRIGAQVHGWVLR-RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYF 378 (526)
Q Consensus 303 ~~~---~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~ 378 (526)
.+| |.++++.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~------------------------ 489 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP------------------------ 489 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC------------------------
Confidence 777 677777777777764 4777777777777777777777777777666554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 009782 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 379 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
+.|+..+|++|+.+|...|+++.|..+++++. ++.| +..+|..|++.|++.|++++|.+++
T Consensus 490 -------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 490 -------FKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 66777777777777777777777777777664 4455 3567777777777777777777777
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-29 Score=266.24 Aligned_cols=446 Identities=11% Similarity=0.027 Sum_probs=324.4
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 65 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.+.+.|++++|+.+++.+.... +.++.++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 3445566666666666665543 2356666777777777777777777777776643 4445566666777777777777
Q ss_pred HHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 145 AHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 145 a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
|.+.|+++...+|. ..++..+...+.+.|++++|...++++.+.+ +.+...+..+...+...|++++|..+++.+.+.
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777655443 3566677777777777777777777776643 344556667777777778888888887777665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc-HHHHH
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD-PVAIS 299 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 299 (526)
. +.+...|..+..+|.+.|++++|...|+.+.+ .+...+..+..++.+.|++++|...++++.+.. |+ ...+.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 3 45666777788888888888888888877653 345567777778888888888888888777642 33 33333
Q ss_pred HHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHh---cCCc
Q 009782 300 SILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKD 371 (526)
Q Consensus 300 ~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~---~~~~ 371 (526)
.+...+ |+.+.|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.+ |+..++..+... .|+.
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 333332 77888888888877765 34566677788888888888888888887764 444444444333 5777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
++|.+.++++.+.. +.+...+..+...|...|+.++|.+.|+++.+. .+++...+..+...+...|+ .+|++.+.+
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 88888888887742 345667888888888889999999999888864 35577888888888888888 778888877
Q ss_pred hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 452 KMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 452 ~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+...|+. .++..+...+...|++++|.+.++++++..|.++.++..++.+|.+.|++++|.+++++|++
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 87777754 67778888888899999999999999999998888999999999999999999999988863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-28 Score=260.87 Aligned_cols=457 Identities=12% Similarity=0.027 Sum_probs=313.8
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhc----------------
Q 009782 58 LTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL---------------- 121 (526)
Q Consensus 58 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------- 121 (526)
.+..+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|.+.++.+.+..
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 3444444455556666666666665544322 33444444444444555555555444444322
Q ss_pred -----------------cCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHH
Q 009782 122 -----------------LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYF 183 (526)
Q Consensus 122 -----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 183 (526)
.+.+..++..+...+...|++++|.+.|+++...+|+ ...+..+...+...|++++|.+.|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1344555666666666666666666666665544432 2345555666666666666666666
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCc
Q 009782 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDL 260 (526)
Q Consensus 184 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 260 (526)
++.+.+ +.+..++..+...+...|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+.
T Consensus 524 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 601 (899)
T TIGR02917 524 KVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601 (899)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 666543 2344556666666666677777777766666554 34455566667777777777777777766653 345
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHH
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVY 337 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (526)
..|..+..++...|++++|...|+++.+.. +.+...+..+...+ |+.++|...++.+.+.. +.+...+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 667777777778888888888877776643 11222233232222 77788888887777653 33466777788888
Q ss_pred HhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009782 338 SKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 411 (526)
...|++++|..+++.+.+ .+...+..+... .|++++|...++++... .|+..++..+..++.+.|+.++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888877764 233344443333 57888999999998884 4555777888889999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.++.+.+. .+.+...+..+...|...|++++|.+.|.+.+...|+ +..+..+...+...|+ ++|+..++++++..|
T Consensus 758 ~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 99998874 4557888899999999999999999999888877774 5788999999999999 889999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+++..+..++.+|.+.|++++|.++++++.+.+.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999988664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-22 Score=183.79 Aligned_cols=432 Identities=14% Similarity=0.127 Sum_probs=301.0
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
-+.|++++|.+.-...-+.+.. +....-.+-..+.+..+.+....--....+.. +--..+|..+.+.+-..|+++.|+
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHH
Confidence 3556677766655544444322 33333333334444555555444333333322 334567777777777777777777
Q ss_pred HHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH-HHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 147 QVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP-RVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 147 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
.+++.+.+.+|+ ...|.-+..++...|+.+.|...|.+..+ +.|+..... -+...+...|++++|..-+.+.++..
T Consensus 137 ~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 137 ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 777777776654 36677777777777777777777777765 345544332 23334445677777777777666542
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHH-HH
Q 009782 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI-SS 300 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ 300 (526)
+-=...|+.|...+-..|++..|+..|++..+-|+ ..|-.|...|-..+.++.|...|.+.... +|+.... ..
T Consensus 215 -p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gN 291 (966)
T KOG4626|consen 215 -PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGN 291 (966)
T ss_pred -CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccc
Confidence 11234566777777777777777777777766433 46667777777777777777777766553 5554322 22
Q ss_pred HHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-hhHHHHHHHh---cCCc
Q 009782 301 ILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-VVSWNSIIHA---HSKD 371 (526)
Q Consensus 301 ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~ 371 (526)
+-.-+ |.++.|...+++.++.... -+..|+.|..++-..|++.+|...|.+... |+ ..+.+.|-.. .++.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 11111 7777777777777665422 245788888888888888888888887764 22 2233333333 5777
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHH
Q 009782 372 HEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
++|..+|....+ +.|... ..+.|...|-++|++++|...+++.. .+.|+ ...|+.+...|...|+.+.|.+.+
T Consensus 371 e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 371 EEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred hHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 888888888777 677654 78889999999999999999999998 57886 678999999999999999999999
Q ss_pred HhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH
Q 009782 450 VEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 450 ~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (526)
.+++.++|.. ..++.|...|..+|+..+|++.|+.++++.|+.+.+|..+..++--..+|.+
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999976 8999999999999999999999999999999999999999888765555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-20 Score=202.56 Aligned_cols=437 Identities=11% Similarity=0.060 Sum_probs=330.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 148 (526)
....+.+...++........|+... ...-.++...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..
T Consensus 248 ~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred chHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344556666665544433333221 233456678899999999999999865 55788899999999999999999999
Q ss_pred HhccccCCCCcc---cHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHH
Q 009782 149 FDQMSNRTAFAF---PWNS------------LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213 (526)
Q Consensus 149 ~~~~~~~~~~~~---~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 213 (526)
|++....+|+.. .|.. ....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 999877665421 1222 2346778999999999999999863 33455677788899999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------------cccHHHHHHHHHhCCChHHHHH
Q 009782 214 EKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD------------LISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 214 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~a~~ 281 (526)
++.|+++.+.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|.+
T Consensus 405 ~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 405 ERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999874 445566777777774 567899999998775421 2245567778889999999999
Q ss_pred HHHHHHHcCCCCcHHHH-HHH---HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC-
Q 009782 282 IFRGMILNGFDPDPVAI-SSI---LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK- 356 (526)
Q Consensus 282 ~~~~m~~~~~~p~~~~~-~~l---l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 356 (526)
.|++..+. .|+.... ..+ ....|+.++|...++.+.+... .+...+..+...+...|+.++|...++.+...
T Consensus 483 ~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 483 LQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 99999885 4553322 222 2223999999999999887543 34445555666778899999999999988642
Q ss_pred ---ChhHH------------HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 009782 357 ---DVVSW------------NSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421 (526)
Q Consensus 357 ---~~~~~------------~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 421 (526)
+.... ...+...|+.++|..+++. .+.+...+..+...+.+.|+.++|.+.|+.+.+.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-- 632 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-- 632 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 11111 1112236888999998872 3445567788899999999999999999999874
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc------c
Q 009782 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE------H 494 (526)
Q Consensus 422 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~ 494 (526)
-+.+...+..++..|...|++++|++.+.+.+...|+. ..+..+..++...|++++|.+.++++++..|+++ .
T Consensus 633 ~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 34468889999999999999999999997777777754 6677788889999999999999999998776543 3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+..++.++...|++++|.+.|++..
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677999999999999999999885
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-20 Score=203.70 Aligned_cols=446 Identities=12% Similarity=0.058 Sum_probs=294.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
+.+.|++++|++.++.+.+..+.................++.++|.+.++.+.+.. +.+...+..+...+...|+.++|
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH
Confidence 44567888888888888765432211111111122234577888888888887764 55666777777888888888888
Q ss_pred HHHHhccccCCCC------------------c---ccH----------------------------------HHHHHHHH
Q 009782 146 HQVFDQMSNRTAF------------------A---FPW----------------------------------NSLISGYA 170 (526)
Q Consensus 146 ~~~~~~~~~~~~~------------------~---~~~----------------------------------~~li~~~~ 170 (526)
+..|+++....+. . ..+ ......+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 8887766332110 0 000 01123455
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHH------------HHHHH
Q 009782 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVL------------NALVD 237 (526)
Q Consensus 171 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~ 237 (526)
..|++++|+..|++..+.. +-+...+..+..++.+.|++++|...|++..+..... ....+ .....
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 6788888888888887642 2355677777788888888888888888877654221 11111 12234
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH-HHHHHHHH----------
Q 009782 238 MYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP-VAISSILA---------- 303 (526)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~---------- 303 (526)
.+.+.|++++|...|+++.+ .+...+..+...+...|++++|++.|++..+.. |+. ..+..+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHH
Confidence 56678888888888877764 244566677788888888888888888877642 321 11111110
Q ss_pred -----------------------------------HhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHH
Q 009782 304 -----------------------------------NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACW 348 (526)
Q Consensus 304 -----------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 348 (526)
..|+.++|...++..++.... +...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 115556666666666554322 34455566667777777777777
Q ss_pred HhccCCC--CC-hhHH---HHHHHhcCCchHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHH
Q 009782 349 LFDHMPQ--KD-VVSW---NSIIHAHSKDHEALIYFEQMERDGVLPDHL---------TFVSLLSACAHLGSVKVGERLF 413 (526)
Q Consensus 349 ~~~~~~~--~~-~~~~---~~li~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~ 413 (526)
.++++.+ |+ ...+ ..++...++.++|...++.+......++.. .+..+...+...|+.++|.+++
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 7766543 22 1111 112222455666766666543322222211 1223455667778888888776
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
+. .+++...+..+...+.+.|++++|++.|.+.+...|+ ...+..++..+...|++++|++.++++.+..|++
T Consensus 597 ~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 597 RQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred Hh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 61 2446667788999999999999999999888888885 4888999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 493 EHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++..++.++...|++++|.++++++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999998764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=178.62 Aligned_cols=420 Identities=15% Similarity=0.173 Sum_probs=335.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 172 (526)
...+.+...+.|++++|++--...-... +.+....-.+-..+....+.+....--.......| ...+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4456666778899999998666554432 33333333444556666666665544433333333 237899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGDIVKART 250 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~ 250 (526)
|++++|+..++.+.+. +| ....|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+...+-..|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999985 44 4568999999999999999999999998876 44433 33445555566899999999
Q ss_pred HHhhcCC--CC-cccHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC
Q 009782 251 VFDRIGN--KD-LISYNSMLTGYIHHGLLVEAFDIFRGMILNG--FDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 251 ~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 325 (526)
.+.+..+ |. .+.|+.|...+-..|+...|+..|++..... ..+-......++...+.++.|...+.+...... -
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n 284 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-N 284 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-c
Confidence 9987765 33 3689999999999999999999999988742 222223445566666888888888877766542 2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH-LTFVSLLS 398 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~ 398 (526)
....+..+...|-..|.++-|+..|++..+ |+ ...|+.|-.+ .|+..+|.+.+++... +.|+. ...+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 456777788889999999999999999875 44 3578888777 5888999999999888 56665 48899999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVC 476 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 476 (526)
.+...|.+++|..+|....+ +.|. ...++.|...|.+.|++++|+..|+++++++|.. ..|+.+...|-..|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999985 5564 6778999999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.|++.+.+++..+|.-..++..|+.+|...|+..+|++-+++..+-..
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-18 Score=180.22 Aligned_cols=209 Identities=11% Similarity=-0.063 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
..|++++|+..|+...+..+. +..++..+..++...|++++|+..+++..+.. +.|...+..+ .. .++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~---i~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA---IPVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH---hccChhHHH
Confidence 348899999999999988766 58888999999999999999999999998874 3444444443 22 288999999
Q ss_pred HHhccccCCCCc-ccHHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCcchHHHH-HHHHhccCChHHHHHHH
Q 009782 148 VFDQMSNRTAFA-FPWNSLISG--------YAELGEYEDAIALYFQMEEEGVEPDQFTFPRV-LKACAGLGLIRVGEKVH 217 (526)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~ 217 (526)
+++++....|+- .++..+... |.+. ++|.+.++ .......|+..+.... .+.|...|+++.|++++
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999998887753 445555554 5544 55555555 3333333445544444 88899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 218 LDAVRFGFGFDGFVLNALVDMYAK-CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 218 ~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
.++.+.+ +.+......|...|.. .++ +++..+++...+.+...+..++..|.+.|+.++|.++++++..
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 9999887 4445556667778877 466 8888887765556788888999999999999999988888753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=179.14 Aligned_cols=296 Identities=16% Similarity=0.068 Sum_probs=146.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD---GFVLNALVDMYAKCGD 244 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 244 (526)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344555666666666665532 12233455555555666666666666665554321111 2345566666666677
Q ss_pred HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009782 245 IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321 (526)
Q Consensus 245 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 321 (526)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------- 179 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI----------------------- 179 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-----------------------
Confidence 7777777666654 34456666677777777777777777776654322211100
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSAC 400 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 400 (526)
...+..+...+.+.|++++|...|+++.+ ..| +...+..+...+
T Consensus 180 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~------------------------------~~p~~~~~~~~la~~~ 224 (389)
T PRK11788 180 -----AHFYCELAQQALARGDLDAARALLKKALA------------------------------ADPQCVRASILLGDLA 224 (389)
T ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------------------HCcCCHHHHHHHHHHH
Confidence 01123344555556666665555554331 011 122344444445
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGET 480 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 480 (526)
.+.|++++|.++++++.+. +-.....++..++.+|...|++++|.+.+.+.....|+...+..++..+.+.|++++|..
T Consensus 225 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 5555555555555555432 111112334444555555555555555554444444444444444455555555555555
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCC
Q 009782 481 AAQKLFELEPDNEHNFELLIKIYGN---AGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~ 524 (526)
.++++++..|++.. +..++..+.. .|+.+++..++++|.++++
T Consensus 304 ~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 304 LLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 55555555554332 3333333332 2345555555555554443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-19 Score=180.46 Aligned_cols=390 Identities=13% Similarity=0.025 Sum_probs=244.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~ 172 (526)
+...-..+.+.|+++.|.+.|+..++. .|+...|..+..+|.+.|++++|++.++.....+|+. .+|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334455667788888888888887764 4567778888888888888888888888887776643 5677788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH-------------HHH--------------hCC
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD-------------AVR--------------FGF 225 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-------------~~~--------------~g~ 225 (526)
|++++|+.-|......+- .+......++..+........+...++. ... ...
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 888888877766544321 1111111111110000000011110000 000 000
Q ss_pred CCch-hHHHHHHHH---HHhcCCHHHHHHHHhhcCCC------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH
Q 009782 226 GFDG-FVLNALVDM---YAKCGDIVKARTVFDRIGNK------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295 (526)
Q Consensus 226 ~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 295 (526)
.+.. ..+..+... ....+++++|.+.|+..... +...|+.+...+...|++++|...+++..+. .|+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 0000 001111110 12236788999999877642 2356777888888999999999999988875 3442
Q ss_pred H-HHHHHH---HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCc
Q 009782 296 V-AISSIL---ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKD 371 (526)
Q Consensus 296 ~-~~~~ll---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 371 (526)
. .+..+- ...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~k------------------- 424 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQK------------------- 424 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------
Confidence 2 221111 11255666666666555442 22345555566666666666666655554
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 372 HEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
..+ +.|+ ...+..+...+.+.|++++|...+++..+. .+.+...+..+...+...|++++|++.|.
T Consensus 425 ---------al~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 425 ---------SID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred ---------HHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 333 3343 456667777788888888888888888753 33457778888888888888888888887
Q ss_pred hhcCCCCCH-HH-------HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 451 EKMEFEASP-VV-------WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 451 ~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+.+...|+. .. ++..+..+...|++++|++.+++++++.|++..++..++.+|.+.|++++|.+.|++..+
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777766642 11 111222334468888888888888888888888888888888888998888888887754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-18 Score=179.62 Aligned_cols=400 Identities=9% Similarity=-0.041 Sum_probs=252.9
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLIS 167 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~ 167 (526)
.++.-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++.....|. +..+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 366667777778888899999999888887633 455667888888899999999999999987776554 356777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
.+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 8888999999999999988752 33344 7777778888999999999999988875 3455566667778888888898
Q ss_pred HHHHHhhcCCCCcc--------cHHHHHHHHHh-----CCCh---HHHHHHHHHHHHc-CCCCcHH-HHH-------HHH
Q 009782 248 ARTVFDRIGNKDLI--------SYNSMLTGYIH-----HGLL---VEAFDIFRGMILN-GFDPDPV-AIS-------SIL 302 (526)
Q Consensus 248 A~~~~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-~~~p~~~-~~~-------~ll 302 (526)
|.+.++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 9988887765 211 11112222211 1223 5566666666643 1222211 110 001
Q ss_pred HHhhhhHHHHHHHHHHHHhCCC-CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHH
Q 009782 303 ANASLLRIGAQVHGWVLRRGVE-WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQM 381 (526)
Q Consensus 303 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m 381 (526)
-..++.++|...++.+.+.+.+ |+. ....+..+|...|+ .++|+..|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~----------------------------~e~A~~~l~~~ 298 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQ----------------------------PEKAQSILTEL 298 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCC----------------------------cHHHHHHHHHH
Confidence 1113444444444444443321 111 11112334444444 45555555554
Q ss_pred HHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHHHhcCChHHH
Q 009782 382 ERDGVLP---DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG----------ISPR---VEHYACMVNLYGRAGLIDEA 445 (526)
Q Consensus 382 ~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 445 (526)
.+..... .......+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|+.++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 4321110 123444555566777777777777777765310 0112 12344566677777777777
Q ss_pred HHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 446 YSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 446 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
++.+.+.+...|+. ..+..+...+...|+.++|++.+++++++.|++...+..++.++...|++++|.++++++.+.
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77776666666643 666777777777777777777777777777777777777777777777777777777777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-18 Score=175.41 Aligned_cols=447 Identities=12% Similarity=0.043 Sum_probs=297.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 56 PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
+.++..+...+.+.|++++|+..+++..+..+ +...|..++..+ +++++|.++++++.+.. +.+..++..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~ 151 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRS 151 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence 44566677778888999999999998887753 333333333333 78888889999988865 4455666655555
Q ss_pred --------HHhcCChhHHHHHHhccccCCCCcccHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 136 --------YATFGLIDEAHQVFDQMSNRTAFAFPWNSL-ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 136 --------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
|.+.++..++++ .+....+|.+.+.... ...|.+.+++++|++.+.++.+.+. .+..-...+..+|..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q 228 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLA 228 (987)
T ss_pred hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 555544444444 2222223323333333 7788888888888888888887652 233334455556665
Q ss_pred -cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC---------------------
Q 009782 207 -LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD--------------------- 259 (526)
Q Consensus 207 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--------------------- 259 (526)
.++ +.+..+++. .+..+...+..+...|.+.|+.++|.++++++.. |+
T Consensus 229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 355 555555432 2234666667777777777777777777666531 00
Q ss_pred ------------------------------------------------------------------------cccHHHHH
Q 009782 260 ------------------------------------------------------------------------LISYNSML 267 (526)
Q Consensus 260 ------------------------------------------------------------------------~~~~~~li 267 (526)
.....-+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00000000
Q ss_pred HHHHhCCChHHHHHHHHHHHH-----------------------------------------------------------
Q 009782 268 TGYIHHGLLVEAFDIFRGMIL----------------------------------------------------------- 288 (526)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~----------------------------------------------------------- 288 (526)
-...+.|+.++|.++|+....
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 011223333333333332211
Q ss_pred ---c-CCCCc---HHHHHHHHHHh--hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CC
Q 009782 289 ---N-GFDPD---PVAISSILANA--SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD 357 (526)
Q Consensus 289 ---~-~~~p~---~~~~~~ll~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 357 (526)
. +..|+ ...+..+-..+ ++.++|...+....... |+......+...+...|++++|...|+++.. ++
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 0 11122 22222222222 77778888777776654 4444444455566789999999999987664 33
Q ss_pred hhHHHHH---HHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 009782 358 VVSWNSI---IHAHSKDHEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV 433 (526)
Q Consensus 358 ~~~~~~l---i~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 433 (526)
...+..+ ....|+.++|..++++..+.+ |+. ..+..+.......|++++|...+++..+ +.|+...+..+.
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA 616 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARA 616 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 3333222 233688899999999998853 443 3344444455567999999999999985 467888999999
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
.++.+.|++++|+..+.+.+...|+. ..+..+..++...|+.++|+..++++++..|+++.++..++.+|...|++++|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999965 77888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 009782 513 ERVERMLVDRG 523 (526)
Q Consensus 513 ~~~~~~m~~~g 523 (526)
...+++..+..
T Consensus 697 ~~~l~~Al~l~ 707 (987)
T PRK09782 697 QHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhcC
Confidence 99999987654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-18 Score=172.61 Aligned_cols=361 Identities=10% Similarity=-0.007 Sum_probs=259.9
Q ss_pred CchHHHHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 66 KTKLQALDSIIQDLESSVQNG--ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
+.++.+|+..--.+....++- -..+..-...++..+.+.|++++|..+++...... +.+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 346667766555554443321 11134456677888889999999999999998875 445566667777778899999
Q ss_pred HHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHH
Q 009782 144 EAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAV 221 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 221 (526)
+|...|+++...+|+ +..+..+...+...|++++|.+.+++..+. .|+ ...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999888765 367888889999999999999999999874 344 5577888889999999999999999887
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 222 RFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 222 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
..... +...+..+ ..+.+.|++++|...++.+.+.+ ...+..+..++...|++++|...+++..+.. |+
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~--- 244 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LD--- 244 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC---
Confidence 66432 33333333 34778899999999998876532 2334455677888899999999998887642 32
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHH
Q 009782 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377 (526)
Q Consensus 298 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~ 377 (526)
+...+..+...|...|++++|. .+|...
T Consensus 245 ----------------------------~~~~~~~Lg~~l~~~G~~~eA~------------------------~~A~~~ 272 (656)
T PRK15174 245 ----------------------------GAALRRSLGLAYYQSGRSREAK------------------------LQAAEH 272 (656)
T ss_pred ----------------------------CHHHHHHHHHHHHHcCCchhhH------------------------HHHHHH
Confidence 3344566778888888887632 123444
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 378 FEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 378 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
+++..+ ..|+ ...+..+...+...|++++|...++++.+. -+.+...+..+..+|.+.|++++|.+.+.+.+...
T Consensus 273 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 273 WRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444444 3343 457777788888888888888888888753 22245566777888888888888888887777777
Q ss_pred CCHHH-HHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 457 ASPVV-WGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 457 p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
|+... +..+..++...|+.++|...|+++++..|++
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 76533 3345566778888888888888888887774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-19 Score=168.73 Aligned_cols=288 Identities=16% Similarity=0.121 Sum_probs=206.0
Q ss_pred HHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---cchHHHHHHHHhccCCh
Q 009782 135 LYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD---QFTFPRVLKACAGLGLI 210 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~ 210 (526)
.+...|++++|...|+++...+|+. .++..+...+...|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3445667777777777766665533 4566666677777777777777777665321111 13456666677777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--------ccHHHHHHHHHhCCChHHHHHH
Q 009782 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL--------ISYNSMLTGYIHHGLLVEAFDI 282 (526)
Q Consensus 211 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~~~ 282 (526)
+.|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776543 34566677777777777777777777777654211 1345677778889999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHH
Q 009782 283 FRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362 (526)
Q Consensus 283 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 362 (526)
|+++.+.. |+ +...+..+...|.+.|++++|.+.|+++.
T Consensus 203 ~~~al~~~--p~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------- 241 (389)
T PRK11788 203 LKKALAAD--PQ-------------------------------CVRASILLGDLALAQGDYAAAIEALERVE-------- 241 (389)
T ss_pred HHHHHhHC--cC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
Confidence 99887642 22 22344567788889999888888877544
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 009782 363 SIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442 (526)
Q Consensus 363 ~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 442 (526)
+.+......++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++
T Consensus 242 --------------------~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 242 --------------------EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred --------------------HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCH
Confidence 2111112356788889999999999999999999864 57777778899999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHc
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYL---HGNVCMGETAAQKLFE 487 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 487 (526)
++|.+++.+.+...|+...+..++..+.. .|+.+++...++++++
T Consensus 299 ~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 299 EAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999998888889999889888887664 5588889988888875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-18 Score=170.02 Aligned_cols=328 Identities=11% Similarity=-0.038 Sum_probs=202.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
..++..+.+.|++++|+.+++....... -+...+..++.++...|+++.|...++.+.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3444555555666666666655554321 122233333444445566666666666655543 33344555555555666
Q ss_pred CCHHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHH-HHHHhhhhHHHHHHHHHH
Q 009782 243 GDIVKARTVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS-ILANASLLRIGAQVHGWV 318 (526)
Q Consensus 243 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~a~~~~~~~ 318 (526)
|++++|...+++..+ | +...+..+...+...|++++|...++.+......+....+.. .+...|++++|...++.+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666655543 2 234555555566666666666666655544321111111100 000002222222222222
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009782 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398 (526)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 398 (526)
......++......+..++...|++++|...+ ++..+.. +.+...+..+..
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~----------------------------~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTG----------------------------ESALARG-LDGAALRRSLGL 254 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH----------------------------HHHHhcC-CCCHHHHHHHHH
Confidence 22211111222223334445555555555444 4544432 224557778888
Q ss_pred HHhccCCHHH----HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC
Q 009782 399 ACAHLGSVKV----GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG 473 (526)
Q Consensus 399 ~~~~~~~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 473 (526)
.+...|++++ |...++++.+. .+.+...+..+...+.+.|++++|...+.+.+...|+. ..+..+...+...|
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999986 89999999863 23367788999999999999999999998889889965 67788889999999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++++|+..++++.+..|++...+..++.+|...|++++|.+.|++..+..
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987767777899999999999999999987654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-17 Score=163.53 Aligned_cols=422 Identities=9% Similarity=0.035 Sum_probs=256.7
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
..+.|+++.|++.|++..+..+.-.+..+ .++..+...|+.++|+..++...... +........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 45788899999999999877544222344 77888888899999999999888211 22233333446678888999999
Q ss_pred HHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 146 HQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
+++|+++...+|+ +..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999888765 356777788889999999999999998874 5666666445444445666666999999999885
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcccH--HHHHHHHH---------hCCC---hHHHHHHHHHHH
Q 009782 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK---DLISY--NSMLTGYI---------HHGL---LVEAFDIFRGMI 287 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~li~~~~---------~~g~---~~~a~~~~~~m~ 287 (526)
+.+...+..+...+.+.|-...|.++.++-+.- ....+ ...+.-.. ...+ .+.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 556777888889999999999999888775531 00000 00011111 1122 334555555554
Q ss_pred Hc-CCCCcHH-HH-HHH------HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCC-
Q 009782 288 LN-GFDPDPV-AI-SSI------LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD- 357 (526)
Q Consensus 288 ~~-~~~p~~~-~~-~~l------l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 357 (526)
.. +-.|... .| ... +...++..++...++.+...+.+....+-..+.++|...+++++|+.+|+.+..++
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2223321 11 122 22237788888888888888877667777888888888888888888888764321
Q ss_pred --------hhHHHHHHHh---cCCchHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHhccCCHHHHHHH
Q 009782 358 --------VVSWNSIIHA---HSKDHEALIYFEQMERDGV-------------LPDHL-TFVSLLSACAHLGSVKVGERL 412 (526)
Q Consensus 358 --------~~~~~~li~~---~~~~~~a~~~~~~m~~~~~-------------~p~~~-~~~~ll~~~~~~~~~~~a~~~ 412 (526)
......|.-+ -+++++|..+++.+.+.-. .||-. .+..++..+...|+..+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1112223333 2444555555555554110 11111 222334444455555555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
++++.. .-+-|......+.+.+...|++.+|.+.++......|+. .+....+.++...|++.+|..+.+.+.+..|+
T Consensus 439 le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 439 LEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 555543 122345555555555555555555555554444445533 44444455555555555555555555555555
Q ss_pred Ccc
Q 009782 492 NEH 494 (526)
Q Consensus 492 ~~~ 494 (526)
+..
T Consensus 517 ~~~ 519 (822)
T PRK14574 517 DIP 519 (822)
T ss_pred chh
Confidence 543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=172.91 Aligned_cols=412 Identities=10% Similarity=-0.019 Sum_probs=302.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 56 PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
+......+......|+.++|++++....... +.+...+..+..++.+.|++++|.++++...+.. +.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344445555678899999999999997633 3355678899999999999999999999998864 5567778888999
Q ss_pred HHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCChHHH
Q 009782 136 YATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-FTFPRVLKACAGLGLIRVG 213 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a 213 (526)
+...|++++|+..+++.....|+. . +..+..++...|+.++|+..++++.+. .|+. ..+..+..++...|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999998876643 5 888888999999999999999999985 4544 4556677778888999999
Q ss_pred HHHHHHHHHhCCCCch------hHHHHHHHHHH-----hcCCH---HHHHHHHhhcCC---CCccc---H----HHHHHH
Q 009782 214 EKVHLDAVRFGFGFDG------FVLNALVDMYA-----KCGDI---VKARTVFDRIGN---KDLIS---Y----NSMLTG 269 (526)
Q Consensus 214 ~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~---~~~~~---~----~~li~~ 269 (526)
.+.++.... .|+. .....++.... ..+++ ++|+..++.+.+ .++.. + ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 988876553 2221 11222222222 22234 678877777763 22211 1 111345
Q ss_pred HHhCCChHHHHHHHHHHHHcCCC-CcHHH--HHHHHHHhhhhHHHHHHHHHHHHhCCCC---chhHHhHHHHHHHhcCCh
Q 009782 270 YIHHGLLVEAFDIFRGMILNGFD-PDPVA--ISSILANASLLRIGAQVHGWVLRRGVEW---DLCIANSLIVVYSKDGKL 343 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~-p~~~~--~~~ll~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 343 (526)
+...|++++|...|+++.+.+.. |+... +..+....+++++|...++.+....... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 56779999999999999987632 44322 2222223399999999999987654221 134456667788999999
Q ss_pred HHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 009782 344 DQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDH---LTFVSLLSACAHLGSVKVGERLFSVMVEKY 420 (526)
Q Consensus 344 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 420 (526)
++|..+++.+.+.++.... ++. ...-.|+. ..+..+...+...|+.++|++.++++...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~--------------~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~- 388 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLR--------------LYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN- 388 (765)
T ss_pred HHHHHHHHHHhhcCCceEe--------------ecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999999887642110000 000 00123442 34566777888999999999999999863
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.+.+...+..+...+...|++++|++.+.+.+...|+. ..+...+..+...|++++|+..++++++..|+++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 45578888999999999999999999999999999975 67777778899999999999999999999999886
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-17 Score=165.55 Aligned_cols=386 Identities=9% Similarity=-0.016 Sum_probs=267.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
+.|++++|+..+++.... .|++..|..+..++.+.|++++|.+.++..++.. +.+...+..+..+|...|++++|+.
T Consensus 139 ~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred HcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 557899999999998865 4677889899999999999999999999999875 5567789999999999999999998
Q ss_pred HHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHH-----------------HH---------H-cCCCCCc-chHH
Q 009782 148 VFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQ-----------------ME---------E-EGVEPDQ-FTFP 198 (526)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~-----------------m~---------~-~~~~p~~-~t~~ 198 (526)
.|......++.. .....++..+........+...++. .. . ....++. ..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 886654332211 1111111111110000111111100 00 0 0000110 0111
Q ss_pred HHHHH---HhccCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-cccHHHHHHHH
Q 009782 199 RVLKA---CAGLGLIRVGEKVHLDAVRFG-F-GFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KD-LISYNSMLTGY 270 (526)
Q Consensus 199 ~ll~~---~~~~g~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~ 270 (526)
.+... ....+++++|.+.|+...+.+ . +.....++.+...+...|++++|...|++..+ |+ ...|..+...+
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 11111 123467899999999998865 2 33456788888899999999999999998865 32 45778888899
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHH
Q 009782 271 IHHGLLVEAFDIFRGMILNGFDPDP-VAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQA 346 (526)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 346 (526)
...|++++|...|++..+.. |+. ..+..+-..+ |++++|...++..++... .+...+..+..++.+.|++++|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988753 432 2333222222 899999999999887653 3556677788888888888888
Q ss_pred HHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 009782 347 CWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425 (526)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 425 (526)
+..|++.. . ..| +...++.+...+...|++++|.+.|+...+. .|+
T Consensus 453 ~~~~~~al----------------------------~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~ 499 (615)
T TIGR00990 453 MATFRRCK----------------------------K--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKE 499 (615)
T ss_pred HHHHHHHH----------------------------H--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCc
Confidence 88877543 2 233 3567888888899999999999999998753 332
Q ss_pred h-h-------HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 426 V-E-------HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 426 ~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
. . .++.....+...|++++|.+.+.+.+...|+. ..+..+...+...|++++|++.|+++.++.+..
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 1 1 11222223444699999999998888888866 678889999999999999999999999887653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-15 Score=144.34 Aligned_cols=448 Identities=11% Similarity=0.074 Sum_probs=294.8
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC---ChhH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG---LIDE 144 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~ 144 (526)
..+++..|+.+|.......+..-+...-.+-.++.+.++.+.|+..|....+.. +.++.++..|...-.... .+..
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHH
Confidence 346677777777775544322222222223355567777777777777777654 233333333332222222 2344
Q ss_pred HHHHHhccccC-CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 009782 145 AHQVFDQMSNR-TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV--EPDQFTFPRVLKACAGLGLIRVGEKVHLDAV 221 (526)
Q Consensus 145 a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 221 (526)
+..++...-.. +-+|+..+.|...|.-.|++..++.+...+..... ..-...|-.+.+++-..|++++|...|.+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 55555444322 33457888888888899999999998888776421 1123357778888999999999999988877
Q ss_pred HhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCC
Q 009782 222 RFGFGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGN--K-DLISYNSMLTGYIHHG----LLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 222 ~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~ 292 (526)
+.. +|. ..+-.+...|.+.|+++.+...|+.+.+ | +..+...|...|+..+ ..+.|..++.+..+.- .
T Consensus 335 k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 335 KAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred ccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 653 333 3445678889999999999999988865 2 3456666666666665 4566666666665542 2
Q ss_pred CcHHHHHHHHHHh--hhhHHHHHHH----HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------CCh-
Q 009782 293 PDPVAISSILANA--SLLRIGAQVH----GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------KDV- 358 (526)
Q Consensus 293 p~~~~~~~ll~~~--~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~- 358 (526)
.|...|..+-..+ ++......++ +.+...+..+.+...|.+...+...|++++|...|..... ++.
T Consensus 412 ~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 2333333332222 3433334444 3445667778999999999999999999999999987653 222
Q ss_pred ------hHHHH--HHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH
Q 009782 359 ------VSWNS--IIHAHSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429 (526)
Q Consensus 359 ------~~~~~--li~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (526)
.-||. +....++.+.|.+.|..+.. ..|+-. .|.-++......++..+|...++.+.. ....++..+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~ar 567 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNAR 567 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHH
Confidence 12432 33346888999999999988 356544 444444333345788889998888876 455566666
Q ss_pred HHHHHHHHhcCChHHHHHHHH---hhcCCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHccCCCCcc
Q 009782 430 ACMVNLYGRAGLIDEAYSMIV---EKMEFEASPVVWGALLYACYL------------HGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~---~~~~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..+...+.+...+..|.+-|. +.....+|..+..+|+..|.. .+..+.|++.|.++++.+|.|..
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 677778888888888877441 222334666666677765542 23467888888888889999888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+-+.++-+++..|++.+|..+|.+.++..
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 88888889999999999999988887653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-14 Score=127.61 Aligned_cols=413 Identities=15% Similarity=0.118 Sum_probs=252.2
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc--cCChHHH-HHHHHHHhhhccCCChhHHHHHHHHHHhcCCh
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQ--LKAVEHG-IKLHRLIPTNLLRKNKGISSKLLRLYATFGLI 142 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 142 (526)
.+..+..+++.-+++.|.+.|+..+...-..+++.-+- ..++.-| ++-|-.|...| +.+..+| +.|++
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccH
Confidence 45667788888899999999888888777777765443 3333322 12233333344 3333344 34554
Q ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 143 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
.+ -+|+.. ...+ .+|..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-.. ..+++.+|..
T Consensus 196 Ad--L~~E~~-PKT~--et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMis 266 (625)
T KOG4422|consen 196 AD--LLFETL-PKTD--ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMIS 266 (625)
T ss_pred HH--HHHhhc-CCCc--hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHH
Confidence 43 334433 3334 7899999999999999999999999988888999999999998765332 2788899999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 009782 223 FGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302 (526)
Q Consensus 223 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 302 (526)
..+.||..|+|+++.+..+.|+++.|.+. |.+++.+|++-|+.|...+|..+|
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~ii 319 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLII 319 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHH
Confidence 99999999999999999999988877643 344555555555555555555555
Q ss_pred HHh---hhh-HHHHHHHHHHHH----hCC----CCchhHHhHHHHHHHhcCChHHHHHHhccCCC--------CC---hh
Q 009782 303 ANA---SLL-RIGAQVHGWVLR----RGV----EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--------KD---VV 359 (526)
Q Consensus 303 ~~~---~~~-~~a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~ 359 (526)
..+ ++. ..+..+...+.. +.. +.+...+...|+.|.+..+.+-|..+..-... ++ ..
T Consensus 320 k~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 320 KNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred HHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 544 111 112222222221 111 12334455666666677777766665443331 11 12
Q ss_pred HHHHHHHhcC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009782 360 SWNSIIHAHS---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436 (526)
Q Consensus 360 ~~~~li~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 436 (526)
-|.-+....+ ..+.-+.+|+.|+-.-+-|+..+...++++....|.++-.-++|..+..- |..-+......+...+
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Confidence 2333333322 23556677777777767778888888888877777777777777777654 5444433333344444
Q ss_pred HhcC-Ch-------------------HHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCCC
Q 009782 437 GRAG-LI-------------------DEAYSMIVEKM-EFEASPVVWGALLYACYLHGNVCMGETAAQKLFEL---EPDN 492 (526)
Q Consensus 437 ~~~g-~~-------------------~~A~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~ 492 (526)
++.. +. .++.+.-.+.+ ..+......+.+.-.+.+.|..++|.+++..+++. .|..
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 4433 11 11111111111 23334456666667778888888888888877542 2433
Q ss_pred cc--hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 493 EH--NFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 493 ~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+. +...+++.-.+.++...|..+++-|...+.
T Consensus 559 p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 559 PLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 33 233555556667777788888877766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-14 Score=143.75 Aligned_cols=420 Identities=9% Similarity=-0.018 Sum_probs=306.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCCh--hHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccH-HHH--HHH
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK--GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPW-NSL--ISG 168 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l--i~~ 168 (526)
|...+ ...+.|+++.|.+.|++..+.. |+. .++ .++..+...|+.++|+..+++.....+ ..+ ..+ ...
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n--~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN--ISSRGLASAARA 111 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC--CCHHHHHHHHHH
Confidence 43333 4468899999999999998864 332 344 888888999999999999999984433 333 333 457
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 248 (526)
+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 778899999999999999864 234556677788889999999999999998876 45555665555555556777679
Q ss_pred HHHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH------HHHHHH-----------Hhhhh
Q 009782 249 RTVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA------ISSILA-----------NASLL 308 (526)
Q Consensus 249 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------~~~ll~-----------~~~~~ 308 (526)
++.++++.+ | +...+..+..++.+.|-...|.++..+-... +.+.... ....+. .+.-.
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999998875 3 4567788889999999999998876653211 1111111 111111 01123
Q ss_pred HHHHHHHHHHHHh-CCCCch-hHH----hHHHHHHHhcCChHHHHHHhccCCCCC--hhHH--HHHHHh---cCCchHHH
Q 009782 309 RIGAQVHGWVLRR-GVEWDL-CIA----NSLIVVYSKDGKLDQACWLFDHMPQKD--VVSW--NSIIHA---HSKDHEAL 375 (526)
Q Consensus 309 ~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~li~~---~~~~~~a~ 375 (526)
+.+..-++.+... +..|.. ..| --.+-++...|+..++++.|+.+..+. +..| .++..+ .++.++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4455555555442 222321 122 234567888999999999999998532 2333 223333 58889999
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHHH
Q 009782 376 IYFEQMERDG-----VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG----------ISPR---VEHYACMVNLYG 437 (526)
Q Consensus 376 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~ 437 (526)
.+++++.... ..++......|.-++...+++++|..+++.+.+... -.|| ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999997643 123344467899999999999999999999986311 0122 233455678889
Q ss_pred hcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 009782 438 RAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
..|+..+|++.+.+.....| |......+...+...|....|++.++.+..+.|++..+....+.++...|+|++|..+.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999988888889 55888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 009782 517 RMLVDRG 523 (526)
Q Consensus 517 ~~m~~~g 523 (526)
+.+.+..
T Consensus 508 ~~l~~~~ 514 (822)
T PRK14574 508 DDVISRS 514 (822)
T ss_pred HHHHhhC
Confidence 8887653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-14 Score=142.07 Aligned_cols=294 Identities=17% Similarity=0.105 Sum_probs=171.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CCc------ccHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-------KDL------ISYNSMLTGYIHHGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (526)
+-++.....|.+...+...|++++|...|+.... +|. .+-..+...+-..++++.|.+.|..+...
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 3334445555555555555555555555544332 111 11223344444445555555555555543
Q ss_pred CCCcHHHHHHHHHH----hhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-C--ChhHHHH
Q 009782 291 FDPDPVAISSILAN----ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-K--DVVSWNS 363 (526)
Q Consensus 291 ~~p~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~ 363 (526)
-|..+..-.=+.+ -+...++...+....... ..++..+..+...+.+...+..|.+-|+.+.+ + ...+|..
T Consensus 526 -hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 -HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred -CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 2332221111111 144444444444444332 23444455555566666666666664443332 1 1123333
Q ss_pred HHHh------c-----------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch
Q 009782 364 IIHA------H-----------SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV 426 (526)
Q Consensus 364 li~~------~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 426 (526)
+--+ . +..++|+++|.+..... +-|...-+-+.-.++..|++..|..+|....+. ..-..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~ 680 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFE 680 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCC
Confidence 3222 1 11256888888877742 225566777777788888999999999888875 23355
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKME---FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
.+|-.+.++|..+|++-.|+++|...++ .+-+....+.|..++...|.+.+|.+.+..+..+.|.++..-..++-+.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 6777888889999999999998855553 2336688888888988999999999998888888888877655544333
Q ss_pred -------------------HhcCChHHHHHHHHHHHhCC
Q 009782 504 -------------------GNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 504 -------------------~~~g~~~~A~~~~~~m~~~g 523 (526)
...+..++|.++|.+|...+
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23345566777777776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-11 Score=114.52 Aligned_cols=450 Identities=12% Similarity=0.020 Sum_probs=344.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHh----hhccCCChhHHHHHHHHHHh
Q 009782 63 AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP----TNLLRKNKGISSKLLRLYAT 138 (526)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~ 138 (526)
..++.+...|+.|..++++.++. ++.+..++.+....=-..|+.+...++....+ ..|+..+...|-.-...+-+
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34556778888888888888766 45578888777777777888888888776543 46777888888777778888
Q ss_pred cCChhHHHHHHhccccCCCC----cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAF----AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 214 (526)
.|.+-.+..+.......+.. -.+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 88887777777766544332 267888888999999999999999988874 3344556666666666778999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 009782 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291 (526)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 291 (526)
.+++++...- +-....|-.....+...||+..|..++...-+. +...|-+-+........++.|..+|.+....+-
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 9999988763 445566666777788889999999998877652 446788888888999999999999998877543
Q ss_pred CCcHHHHHHHH-HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChh-HHHHHHHh
Q 009782 292 DPDPVAISSIL-ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVV-SWNSIIHA 367 (526)
Q Consensus 292 ~p~~~~~~~ll-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~ 367 (526)
.+...+-+.-+ ...++.++|..++++.++.- +.-...|..+.+.+-..++++.|...|..-.+ |+.. .|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 33333333333 34499999999998887753 33356788888999999999999999887765 5544 34444333
Q ss_pred ---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 009782 368 ---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444 (526)
Q Consensus 368 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 444 (526)
-+..-.|..+++.-.-++ +-+...|...++.-.+.|+.+.|..++.++.+ ..+.+...|..-|....+-++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchH
Confidence 456678899998877653 23667899999999999999999999999887 466677888888887777777666
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 445 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..+.+ +.. .-|+..+..+...+....+++.|.+.|+++++..|++..+|..+...+.+.|.-++-.+++.+....
T Consensus 806 s~DAL-kkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 806 SIDAL-KKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 66555 333 4566677778888888999999999999999999999999999999999999988888888887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-15 Score=133.25 Aligned_cols=445 Identities=14% Similarity=0.090 Sum_probs=292.2
Q ss_pred CCccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHccCChHHHHHHHHHHhhhccCCC----hhHH
Q 009782 55 TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLL-ETCYQLKAVEHGIKLHRLIPTNLLRKN----KGIS 129 (526)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 129 (526)
+...+..+...+.......+|+..++-.++...-|+.-.+..-+ ..+.+.+.+.+|++.|+..+..-...+ ..+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 33345555666677778888998888888877777766554333 456677889999999987776432222 3445
Q ss_pred HHHHHHHHhcCChhHHHHHHhccccCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc--------hHHHH
Q 009782 130 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAF-PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF--------TFPRV 200 (526)
Q Consensus 130 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------t~~~l 200 (526)
+.+...+.+.|+++.|+..|+...+..|+.. .||..|. +.--|+-++..+.|..|......||.. .-..|
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~-~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIIC-AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhh-heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5555667889999999999999888888764 4555554 445788888899999987643223222 12222
Q ss_pred HHHHhccC--------ChHHHHHHHH---HHHHhCCCCchhH-------------HH--------HHHHHHHhcCCHHHH
Q 009782 201 LKACAGLG--------LIRVGEKVHL---DAVRFGFGFDGFV-------------LN--------ALVDMYAKCGDIVKA 248 (526)
Q Consensus 201 l~~~~~~g--------~~~~a~~~~~---~~~~~g~~~~~~~-------------~~--------~li~~~~~~g~~~~A 248 (526)
+.-..+.. +-..|++.+- .++.--+.|+-.. +. .-...|.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22222111 1112222211 1111112222100 00 112346788999999
Q ss_pred HHHHhhcCCCCcccHHHHHH----H-HHh-CCChHHHHHHHHHHHHcCCCCcHHHHHHHHH----Hh--hhhHHHHHHHH
Q 009782 249 RTVFDRIGNKDLISYNSMLT----G-YIH-HGLLVEAFDIFRGMILNGFDPDPVAISSILA----NA--SLLRIGAQVHG 316 (526)
Q Consensus 249 ~~~~~~~~~~~~~~~~~li~----~-~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~--~~~~~a~~~~~ 316 (526)
.++++-..+.|..+-.+... . |.+ ..++..|.++-+..... |...-..+.. ++ |++++|.+.++
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 98888887766544332221 1 222 33566666665544432 1111111111 11 88999999999
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHH---HHHhcCCchHHHHHHHHHHHCCCCCCH
Q 009782 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNS---IIHAHSKDHEALIYFEQMERDGVLPDH 390 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~---li~~~~~~~~a~~~~~~m~~~~~~p~~ 390 (526)
+.+...-......|| +.-.+-..|++++|+..|-++.. .+....-- +.....+..+|++++-+.... ++-|+
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 988776555555554 34456778999999998876542 22222211 222245667788887766552 34456
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH-
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC- 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~- 469 (526)
....-|...|-+.|+-..|.+.+-+--. -++-+..+...|...|....-+++|+..|+++--+.|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7888999999999999999887665433 3556899999999999999999999999987778899999999888876
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.+.|++..|...|+...+..|.+...+..|++++...|-
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 679999999999999999999999999999999888774
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-14 Score=126.61 Aligned_cols=416 Identities=13% Similarity=0.114 Sum_probs=285.3
Q ss_pred HHHHccCChHHHHHHHHHHhhhccCCChhHHH-HHHHHHHhcCChhHHHHHHhccccCCCCc------ccHHHHHHHHHh
Q 009782 99 ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISS-KLLRLYATFGLIDEAHQVFDQMSNRTAFA------FPWNSLISGYAE 171 (526)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~li~~~~~ 171 (526)
.-|.......+|+..|+-+.+...-|+..... .+.+.+.+.+.+.+|+++++....+-|++ ...+.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 33444556778899999888887777765443 34566778889999999998876664432 334555567789
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC------------chhHHHHHH---
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF------------DGFVLNALV--- 236 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~------------~~~~~~~li--- 236 (526)
.|++++|+.-|+...+. .|+..+-..|+-++...|+-++..+.|..|+.....| +....+.-+
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 99999999999998875 5887765556666667899999999999998654332 333333222
Q ss_pred --HHHHhcCC--HHHHH----HHHhhcCCCCcc-------------cHH--------HHHHHHHhCCChHHHHHHHHHHH
Q 009782 237 --DMYAKCGD--IVKAR----TVFDRIGNKDLI-------------SYN--------SMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 237 --~~~~~~g~--~~~A~----~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
.-+-+.+. .+++. ++..-+..|+.. .+. .-...|.+.|+++.|.++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 22222211 12221 222222223221 011 11335789999999999999887
Q ss_pred HcCCCCcHHHHHHH--HHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHH
Q 009782 288 LNGFDPDPVAISSI--LANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWN 362 (526)
Q Consensus 288 ~~~~~p~~~~~~~l--l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 362 (526)
+..-+.....-+.+ +.-. .++..|.++.+..+...- -++.....-...-...|++++|.+.|++....|.....
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 76433322222222 2222 456666666666543321 12222222233445679999999999999987776555
Q ss_pred HHHHh------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 009782 363 SIIHA------HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLY 436 (526)
Q Consensus 363 ~li~~------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 436 (526)
+|... .++.++|++.|-++..- +.-+..+...+...|....+...|.+++.+... -++.|+.....|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 55433 79999999999887652 233566777888889999999999999988764 3555899999999999
Q ss_pred HhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH-HHHhcCChHHHHH
Q 009782 437 GRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK-IYGNAGRLDDVER 514 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~ 514 (526)
-+.|+-..|.+.+-+....-| +..+..-|..-|....-.++|+.+|+++--+.|+-.. |..++. ++.+.|+|.+|.+
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k-wqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK-WQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHhcccHHHHHH
Confidence 999999999998878887777 4477777777778888889999999999989998555 777664 5567999999999
Q ss_pred HHHHHHh
Q 009782 515 VERMLVD 521 (526)
Q Consensus 515 ~~~~m~~ 521 (526)
+++....
T Consensus 682 ~yk~~hr 688 (840)
T KOG2003|consen 682 LYKDIHR 688 (840)
T ss_pred HHHHHHH
Confidence 9988754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-14 Score=132.82 Aligned_cols=193 Identities=19% Similarity=0.150 Sum_probs=141.1
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCCh-hHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDV-VSWNSIIHAH-----SKDHEALIYFEQMERDGVLPDHL-TFVSLLSA 399 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~-----~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~ 399 (526)
+.+|.++..+|.-+++.+.|++.|++..+.|. .+|.--+.++ ..+|+|+..|+..+. +.|... .|--|.-.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhh
Confidence 44555555555555555555555555554333 3333333331 233555666655443 344333 55667778
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 477 (526)
|.+.++++.|+-.|+++. .+.| +......++..+.+.|+.++|++++++++-.+| ++..--..+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 999999999999999998 4666 677777888889999999999999999998888 45555556777788899999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
|++.++++.++.|++...|..++++|.+.|+.+.|+.-|.-+.+-..
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 99999999999999999999999999999999999988877765543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-12 Score=114.33 Aligned_cols=349 Identities=13% Similarity=0.106 Sum_probs=233.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHH
Q 009782 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRV 200 (526)
Q Consensus 123 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 200 (526)
+.+..++..+|.+.|+--..+.|.+++++..... ....+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 5567888999999999989999999998876653 3346788887765433 337888999988899999999999
Q ss_pred HHHHhccCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhhcCC------------CCcccH
Q 009782 201 LKACAGLGLIRV----GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK-ARTVFDRIGN------------KDLISY 263 (526)
Q Consensus 201 l~~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------------~~~~~~ 263 (526)
+++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. .|..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999997765 45778889999999999999999999988888754 3334433321 234456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC----CCCcHH---HHHHHHHH---hhhhHHHHHHHHHHHHhCCCCchhHHhHH
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILNG----FDPDPV---AISSILAN---ASLLRIGAQVHGWVLRRGVEWDLCIANSL 333 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~---~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 333 (526)
..-+..|.+..+.+-|.++..-+.... +.|+.. -|..+... ....+.....++.++-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 677778888888888887766554321 333321 23333332 26677777888888888888888999999
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHH
Q 009782 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL---TFVSLLSACAHLGSVKVGE 410 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~ 410 (526)
+++..-.|+++-.-+++.++..-+.. + +.+--++++..|......|+.. -+..+..-|+ ..-.+..+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght-~--------r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e 509 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHT-F--------RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA-ADIKEAYE 509 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhh-h--------hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999888888876632110 0 1122344555555544455433 2333332222 11222222
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009782 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEASPVVWGALLYACYLHGNVCMGETAAQ 483 (526)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 483 (526)
..-.++.+ ..-.....+...-.+.+.|..++|.+++ ..+ ...|.......++......++...|...++
T Consensus 510 ~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l-~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 510 SQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEML-GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQ 585 (625)
T ss_pred hhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHH-HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 33334433 2334455667777788999999999988 433 223333444466667778888888988888
Q ss_pred HHHccC
Q 009782 484 KLFELE 489 (526)
Q Consensus 484 ~~~~~~ 489 (526)
-+...+
T Consensus 586 ~a~~~n 591 (625)
T KOG4422|consen 586 LASAFN 591 (625)
T ss_pred HHHHcC
Confidence 886654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-12 Score=117.94 Aligned_cols=398 Identities=14% Similarity=0.111 Sum_probs=247.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCC-hhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHh
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKN-KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAE 171 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~ 171 (526)
+-..-.-|.+.|.+++|++.|.+.++. .|+ +..|..+..+|...|+++++.+--.+..+.+|+- .++.--.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 444445567788888888888888876 455 6778888888888888888888877777777642 334444455556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH--------HHH-hC--CCCchhHHHHHHHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD--------AVR-FG--FGFDGFVLNALVDMYA 240 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~--------~~~-~g--~~~~~~~~~~li~~~~ 240 (526)
.|++++|+.=+.- ..++..+....-.-.+.+++.. -.+ .+ +-|+.. .|..|.
T Consensus 196 lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~----fi~syf 258 (606)
T KOG0547|consen 196 LGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSAT----FIASYF 258 (606)
T ss_pred hccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHH----HHHHHH
Confidence 6666666443222 2222222222222222222221 111 11 123322 333332
Q ss_pred hcCCHHHHHHHHhhcCCCCcccHHHHHHHHHh--CC---ChHHHHHHHHHHHHc-CCCCcHH---------HHHHHHHHh
Q 009782 241 KCGDIVKARTVFDRIGNKDLISYNSMLTGYIH--HG---LLVEAFDIFRGMILN-GFDPDPV---------AISSILANA 305 (526)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~-~~~p~~~---------~~~~ll~~~ 305 (526)
..=..+-- ..+..+.......+..++-. .+ .+..|...+.+-... -..++.. ....++.+-
T Consensus 259 ~sF~~~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 259 GSFHADPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred hhcccccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 11000000 00000111112222222111 11 233333333322111 0111111 111122221
Q ss_pred -----hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-----CChhHHHHHHHh-cCCchHH
Q 009782 306 -----SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVVSWNSIIHA-HSKDHEA 374 (526)
Q Consensus 306 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~-~~~~~~a 374 (526)
|+.-.+.+-++..+.....++. .|--+..+|....+.++....|+...+ ||+.....-+.- ++++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 7777888888888776554333 266677788899999999999988775 444444443333 6888999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 375 LIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 375 ~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
..=|++.+. +.|+. ..|..+.-+..+.+.+++++..|++..++ ++--+..|+.....+...+++++|.+.|..++
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999998887 56654 47777777778999999999999999884 66678899999999999999999999998888
Q ss_pred CCCCCH---------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 454 EFEASP---------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 454 ~~~p~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...|+. .+-..++.. .-.+++..|+++++++.+++|....+|..|+......|+.++|+++|++..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777762 222222222 234899999999999999999999999999999999999999999998753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-15 Score=137.01 Aligned_cols=251 Identities=20% Similarity=0.187 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc-CC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 234 ALVDMYAKCGDIVKARTVFDRI-GN----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
.+...+.+.|++++|.+++++. .. .|...|..+.......++++.|.+.++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 4566677778888888877432 22 24445555566666677777777777777664321
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHh---cCCchHHHHHHHHHHH
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKDHEALIYFEQMER 383 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~---~~~~~~a~~~~~~m~~ 383 (526)
++..+..++.. ...+++++|..+++...+ ++...+...+.. .++.+++.++++....
T Consensus 77 -----------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 77 -----------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred -----------------ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 22233444444 566666776666655433 222333333222 4566667777777654
Q ss_pred CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHH
Q 009782 384 DG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPV 460 (526)
Q Consensus 384 ~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 460 (526)
.. ...+...|..+...+.+.|+.++|.+.++++.+. .| |......++..+...|+.+++.+++.......| ++.
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 32 3456778888999999999999999999999974 45 577888999999999999998877744443323 557
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+..+..++...|+.++|+..++++.+..|+|+.....++.++...|+.++|.++.+++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999999999999999887653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-12 Score=124.05 Aligned_cols=286 Identities=10% Similarity=0.076 Sum_probs=174.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCCHHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN--ALVDMYAKCGDIVKAR 249 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 249 (526)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777766654432111 122333344446777888888888777654 34433222 3356777788888888
Q ss_pred HHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCc
Q 009782 250 TVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD 326 (526)
Q Consensus 250 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~ 326 (526)
..++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 88877765 24456777788888888888888888888877544322 111000
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV 406 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 406 (526)
...|..++.......+.+...++++.+.+. .+.+......+..++...|+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-----------------------------~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-----------------------------TRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-----------------------------HhCCHHHHHHHHHHHHHCCCH
Confidence 001111222222233344444444444310 223555666777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKL 485 (526)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 485 (526)
++|.+++++..+. +|+... .++.+....++.+++.+..++..+..|+. ..+..+...|.+.|++++|.+.|+++
T Consensus 280 ~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 280 DTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777642 444422 22333345577777777776666777754 55667777777777777777777777
Q ss_pred HccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 486 FELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 486 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++..|++.. +..+..++.+.|+.++|.+++++-.
T Consensus 355 l~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 355 LKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777544 6677777777777777777777654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-11 Score=119.97 Aligned_cols=379 Identities=13% Similarity=0.065 Sum_probs=231.0
Q ss_pred CChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHH
Q 009782 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYF 183 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 183 (526)
|+.++|.+++.++++.. +.+...|-+|...|-..|+.+++...+-.....+|. ..-|..+.....+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 77777777777777654 555566777777777777777776666554444332 2556666666677777777777777
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH----HHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 009782 184 QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV----LNALVDMYAKCGDIVKARTVFDRIGN-- 257 (526)
Q Consensus 184 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~-- 257 (526)
+..+.. +++...+---...|-+.|+...|...|.++.....+.|..- .-..++.+...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 766642 23333333444556666777777777777666542222221 22234455555666666666655443
Q ss_pred ---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 258 ---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 258 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
-+...++.++..|.+...++.|.....++......+|..-+..-- .....|
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----------------~~~~~~--------- 364 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----------------RRREEP--------- 364 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----------------hccccc---------
Confidence 233456666666677667776666666665544444443320000 000000
Q ss_pred HHHHhcCChHHHHHHhccCCCCChhHHHHHHHh--cCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHH
Q 009782 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA--HSKDHEALIYFEQMERDGVLP--DHLTFVSLLSACAHLGSVKVGE 410 (526)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~ 410 (526)
...+..|+ =...+......++.. ....+....+..-.....+.| +...|.-+.+++...|.+.+|.
T Consensus 365 ~~~~~~~~----------~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 365 NALCEVGK----------ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred cccccCCC----------CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 00000000 000111111111111 122233444444555555444 3457888999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 411 RLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
.+|..+... ...-+...|-.+..+|...|..+.|.+.|.+.+...|+. ..-..|...+.+.|+.++|.+.++.+..-+
T Consensus 435 ~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 435 RLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999865 233357789999999999999999999998888888866 677778888899999999999998876333
Q ss_pred CC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 490 PD---------NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 490 p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+. +..........|...|+.++-..+..+|++.
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 11 2334566788899999999877777777654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-12 Score=122.91 Aligned_cols=339 Identities=18% Similarity=0.171 Sum_probs=192.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 252 (526)
|+.++|.+++.+..+.. +-....|-+|...|-..|+.+++...+-.+.... +-|...|..+.....+.|.+++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 55555555555554432 2333445555555555555555544433333222 333345555555555555555555555
Q ss_pred hhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH----Hh---hhhHHHHHHHHHHHH-h
Q 009782 253 DRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA----NA---SLLRIGAQVHGWVLR-R 321 (526)
Q Consensus 253 ~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~---~~~~~a~~~~~~~~~-~ 321 (526)
.+..+.++ ..+-.-+..|-+.|+...|...|.++.......|...+-.++. .+ ++-+.|.+.++.... .
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 55544222 2222233455555555555555555555422111111111111 11 222444444444433 2
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC----CChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ----KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL 397 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 397 (526)
+-..+...++.++..+.+...++.|......+.. +|..-|..--. ++ .+-..++. ...++.++... ..+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~--~~-~~~~~~~~--~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER--RR-EEPNALCE--VGKELSYDLRV-IRLM 384 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh--cc-cccccccc--CCCCCCccchh-HhHh
Confidence 2334555667788888888888887776654442 22111100000 00 00000000 01223344333 1222
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcC
Q 009782 398 SACAHLGSVKVGERLFSVMVEKYGISP--RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYACYLHG 473 (526)
Q Consensus 398 ~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g 473 (526)
-++.+.+..+....+.....+. .+.| +...|.-+.++|.+.|++.+|+.++.......+.. ..|-.+...|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3344445555555555555554 5444 57788999999999999999999995555544433 68999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+++|.+.|++++...|++..+...|...|.+.|+.++|.+.+..+.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999998754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-10 Score=106.80 Aligned_cols=427 Identities=11% Similarity=0.075 Sum_probs=276.1
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC
Q 009782 76 IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR 155 (526)
Q Consensus 76 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 155 (526)
.+++++..++- +-++..+ ++.....+.+.|.-++....+.- +.+...| -++++..-++.|..+++...+.
T Consensus 366 ~RVlRKALe~i-P~sv~LW----KaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEHI-PRSVRLW----KAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHhC-CchHHHH----HHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555542 2233333 33334556666777777777652 3334433 3455556678888888877665
Q ss_pred CC-CcccHHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--
Q 009782 156 TA-FAFPWNSLISGYAELGEYEDAIALYFQ----MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD-- 228 (526)
Q Consensus 156 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-- 228 (526)
-| ++..|.+-...--.+|+.+...+++.+ +...|+..+..-|..=...|-..|..-.+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 33 336677766666677888877777654 44567777777777777778778888888888887777776432
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-
Q 009782 229 GFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN- 304 (526)
Q Consensus 229 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~- 304 (526)
..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..++...+|.+.... .|....+-.+...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHH
Confidence 35777777888888888888888876665 24456666666666677788888888877765 3333332222211
Q ss_pred h---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHH---HHHHHhcCCchHHHH
Q 009782 305 A---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSW---NSIIHAHSKDHEALI 376 (526)
Q Consensus 305 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~li~~~~~~~~a~~ 376 (526)
. |++..|..++..+.+.... +...|-+.+........++.|..+|.+... +....| ..+...++..++|.+
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 1 7777888888777776544 667777777778888888888888876653 333332 223333566677777
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC
Q 009782 377 YFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 377 ~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (526)
++++-.+ .-|+.. .|..+...+.+.++++.|.+.|..-.+ ..+-.+..|-.|.+.=-+.|.+..|..++.+..-.
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 7776666 345543 666666666677777777766665543 23334556666666666667777777777555555
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 456 EAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 456 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+|+ ...|...++.-.+.|+.+.|..++.++++--|.+...|..-+....+-++-......+++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 663 3667777777777777777777777777777777777777777766666655555555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-12 Score=122.37 Aligned_cols=281 Identities=8% Similarity=-0.031 Sum_probs=199.6
Q ss_pred cCChhHHHHHHhccccCCCCcccHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH--HHHHHHhccCChHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAFAFPWNSL-ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP--RVLKACAGLGLIRVGEK 215 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~ 215 (526)
.|+++.|++.+....+....+..+..+ .....+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 689999998888766554333333333 44447889999999999998763 56654443 33567788899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc-----------cHHHHHHHHHhCCChHHHHHHHH
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI-----------SYNSMLTGYIHHGLLVEAFDIFR 284 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~ 284 (526)
.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999988876 556778888899999999999999988888764322 12222222222223333333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 364 (526)
.+-+. .+.++.....+...+...|+.++|.+++++..
T Consensus 254 ~lp~~---------------------------------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l---------- 290 (398)
T PRK10747 254 NQSRK---------------------------------TRHQVALQVAMAEHLIECDDHDTAQQIILDGL---------- 290 (398)
T ss_pred hCCHH---------------------------------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------
Confidence 32111 12355666778888888888888888776433
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 009782 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE 444 (526)
Q Consensus 365 i~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 444 (526)
+ ..|+.... ++.+....++.+++.+..+...+. .+-|...+..+...+.+.|++++
T Consensus 291 ------------------~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 291 ------------------K--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred ------------------h--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 2 23444222 333444568999999999998864 44467778899999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 445 AYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 445 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
|.+.|++.+...|+...+..+...+.+.|+.++|.+++++.+.+.
T Consensus 347 A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999998888999999998899999999999999999999987753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-11 Score=110.92 Aligned_cols=317 Identities=14% Similarity=0.132 Sum_probs=183.3
Q ss_pred HHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHH--HHHHHHhccCChHH
Q 009782 135 LYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP--RVLKACAGLGLIRV 212 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~ 212 (526)
.+.+.|....|++.|......-| ..|.+-+....-..+.+.+..+.. |.+.|...+. -+..++-.....++
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P--~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYP--WFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCC--cchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 34455666667776666665555 445444443333333332222211 1111211111 12234444445566
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 292 (526)
+.+-.......|++.+...-+....+.-...|+++|+.+|+++.+.|+.-.
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------------------------- 296 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------------------------- 296 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-----------------------------
Confidence 666666666666555554444444444555666666666666655332100
Q ss_pred CcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCch
Q 009782 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372 (526)
Q Consensus 293 p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 372 (526)
-|..+|+.++-.-++-.+..-+ ..-...-.+--+.|...+.+.|+-.++.++|...|+...+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~L-A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk----------------- 358 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYL-AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK----------------- 358 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHH-HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----------------
Confidence 1222333222211110000000 0000000122345556677777777777777777765443
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIV 450 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (526)
+.|.. ..|+.+.+-|....+...|.+.++.+++ +.| |-..|-.|.++|.-.+.+.-|+-.|+
T Consensus 359 -------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 359 -------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred -------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 34443 3566666677778888888888888774 444 77788888888888888888888887
Q ss_pred hhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 451 EKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 451 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
++...+| |+..|.+|+..|.+.++.++|++.|.++....-.+..++..|+++|-+.++.++|.+.+.+.++
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7888777 5578888888888888888888888888877666667788888888888888888877776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=131.66 Aligned_cols=258 Identities=18% Similarity=0.157 Sum_probs=106.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc
Q 009782 61 QKAFPKTKLQALDSIIQDLESSVQNG-ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF 139 (526)
Q Consensus 61 ~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 139 (526)
.+...+.+.|++++|+++++...... ...++..+..+...+...++++.|.+.++.+.+.+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778899999999997665554 23355555566667778899999999999999876 3366677777777 688
Q ss_pred CChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHhccCChHHHHHHHH
Q 009782 140 GLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHL 218 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 218 (526)
+++++|.++++..-+..+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998876666666778889999999999999999999987543 34566678888888999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG---NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 295 (526)
+..+.. +.|....+.++..+...|+.+++.++++... ..|...+..+..+|...|+.++|+..|++.... .|+
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~- 246 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD- 246 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--ccc-
Confidence 999875 4467788899999999999998777776554 356778899999999999999999999998774 232
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 296 VAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 296 ~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
|+.....+.+++...|+.++|..+.+++.
T Consensus 247 ------------------------------d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 ------------------------------DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -------------------------------HHHHHHHHHHHT----------------
T ss_pred ------------------------------ccccccccccccccccccccccccccccc
Confidence 44555677888888888888888877643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.8e-12 Score=120.78 Aligned_cols=426 Identities=14% Similarity=0.065 Sum_probs=252.4
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC
Q 009782 77 QDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT 156 (526)
Q Consensus 77 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 156 (526)
.++-.+...|+.|+..||..+|..||..|+.+.|- +|..|.-...+.+..+++.++.+....++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 45677888999999999999999999999999999 9999988888888899999999988888877665 3
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHH-HHH-------cCCCCCcchHHHHHH--------------HHhccCChHHHH
Q 009782 157 AFAFPWNSLISGYAELGEYEDAIALYFQ-MEE-------EGVEPDQFTFPRVLK--------------ACAGLGLIRVGE 214 (526)
Q Consensus 157 ~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~-------~~~~p~~~t~~~ll~--------------~~~~~g~~~~a~ 214 (526)
|.+.+|..|..+|.+.||... ++..++ |.. .|+.--..-+-..++ ...-.|-++.+.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 444889999999999999765 222222 222 222111111111111 111122222222
Q ss_pred HHHHHHHHhCCCCchhHHHH---HHHHHHh-cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 215 KVHLDAVRFGFGFDGFVLNA---LVDMYAK-CGDIVKARTVFDRIGN-KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
+++.. .|....++. +++-+.. ...+++-....+...+ +++.+|.+++.+-...|+.+.|..++.+|.+.
T Consensus 160 kll~~------~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAK------VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhh------CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 22211 111111111 1222211 1234444444444444 78888888888888888888888888888888
Q ss_pred CCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhc-----------cC-----
Q 009782 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD-----------HM----- 353 (526)
Q Consensus 290 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------~~----- 353 (526)
|+..+.+-|..++.+.++...+..+..-|...|+.|+..|+.-.+-.+..+|....+.+..+ .+
T Consensus 234 gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred CCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 88888888888887778888888888888888888888887766655555333221111000 00
Q ss_pred -----------------CC-------CChhHHHHHHHh-c-CCch--------------------------HHHHHHHHH
Q 009782 354 -----------------PQ-------KDVVSWNSIIHA-H-SKDH--------------------------EALIYFEQM 381 (526)
Q Consensus 354 -----------------~~-------~~~~~~~~li~~-~-~~~~--------------------------~a~~~~~~m 381 (526)
++ .....|...+.. + |+.+ .+..+|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 00 011122211111 1 1111 122233332
Q ss_pred HHC----------C-------------------CCCCHH----------------------------HHHHHHHHHhccC
Q 009782 382 ERD----------G-------------------VLPDHL----------------------------TFVSLLSACAHLG 404 (526)
Q Consensus 382 ~~~----------~-------------------~~p~~~----------------------------~~~~ll~~~~~~~ 404 (526)
... | ..||.. .-+.++-.|++.-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 210 0 011111 1122333333333
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHhcCChHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-----FEASPVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~ 479 (526)
+..+++..-+..... -+ ...|..|++.+....+.+.|..+. +.+. ...+..-+..+.....+.+....+.
T Consensus 474 n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~-~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFV-DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhch-hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 333333332222211 11 156777888888888888888877 4432 2334466777788888888888888
Q ss_pred HHHHHHHcc---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 480 TAAQKLFEL---EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 480 ~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.+++++.+. .|.-..++..+.......|+.+...++.+-+...|+
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 888888762 233345566777777888888888888887777665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-11 Score=118.80 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=76.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCcch-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 009782 171 ELGEYEDAIALYFQMEEEGVEPDQFT-FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 171 ~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 249 (526)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.|.+.+.+..+....++....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 357777777777666553 344332 33334556667777777777777665432222223333466667777777777
Q ss_pred HHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 009782 250 TVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 250 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 292 (526)
..++.+.+ | +...+..+...+...|++++|.+.+..+.+.+..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 77777764 2 4456667777788888888888888888777543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=123.71 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=183.4
Q ss_pred CHHHHHHHHhhcCC--CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcC-C-CCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 244 DIVKARTVFDRIGN--KDL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNG-F-DPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 244 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+..+|...|...+. .|. .....+..+|...+++++|.++|+.+.+.. . .-+...|++.|-.+.+.
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---------- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---------- 403 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----------
Confidence 45677777777553 233 444567788888888999988888887642 1 12334454444322110
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc---CCchHHHHHHHHHHHCCCCC-CHHHHH
Q 009782 319 LRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH---SKDHEALIYFEQMERDGVLP-DHLTFV 394 (526)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~~~a~~~~~~m~~~~~~p-~~~~~~ 394 (526)
.-...| |..+.+. -...+.+|.++-.++ ++++.|++.|++.++ +.| ...+|+
T Consensus 404 ---------v~Ls~L------------aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayT 459 (638)
T KOG1126|consen 404 ---------VALSYL------------AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYT 459 (638)
T ss_pred ---------HHHHHH------------HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhh
Confidence 000011 1122222 234567888888774 667889999999988 677 557898
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhc
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLH 472 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 472 (526)
.+..-+.....+|.|...|+.+. ++.| +...|.-|+-.|.+.++++.|+-.|.+++.++|.. .....++..+.+.
T Consensus 460 LlGhE~~~~ee~d~a~~~fr~Al---~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 460 LLGHESIATEEFDKAMKSFRKAL---GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 (638)
T ss_pred hcCChhhhhHHHHhHHHHHHhhh---cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence 88888889999999999999987 4455 45566678889999999999999999999999965 7777788889999
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
|+.++|+++++++..++|.|+..-...+..+...+++++|.+.++++.+.
T Consensus 537 k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=111.10 Aligned_cols=288 Identities=13% Similarity=0.098 Sum_probs=203.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHH-----HH
Q 009782 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI-----SS 300 (526)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-----~~ 300 (526)
..|...+-...-.+-+.|....|++.|......-+..|.+.+...--.-+.+.+..+. . |...|...+ ..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~----~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV----V-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH----h-cCcccchHHHHHHHHH
Confidence 4454444444445556677777777777766654555555444333333333222221 1 111111111 11
Q ss_pred HHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC------CChhHHHHHHHhcCCchHH
Q 009782 301 ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ------KDVVSWNSIIHAHSKDHEA 374 (526)
Q Consensus 301 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~a 374 (526)
+...+...+++.+-.......|.+.+...-+....+.-...++++|+.+|+++.+ .|..+|+.++-.-.+..+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 1122255666666667777777777777777777788888999999999999986 3556777766654333221
Q ss_pred HHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 375 LIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 375 ~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
.-+-+.... .... +.|..++.+.|.-.++.++|..+|+.+.+ +.| ....|+.+.+-|...++...|++-|..+
T Consensus 316 s~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111111111 1233 35667777888888999999999999985 455 5678889999999999999999999999
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 453 MEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 453 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.+.| |-..|-.|+++|.-.+-..-|+-+|+++.+..|.|+..|..|+++|.+.++.++|.+.|++...-|
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999 559999999999999999999999999999999999999999999999999999999999876543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-11 Score=104.88 Aligned_cols=291 Identities=14% Similarity=0.082 Sum_probs=188.3
Q ss_pred HHHHHHh--cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 165 LISGYAE--LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 165 li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
+..+..+ .|+|.+|+++..+-.+.+-.| ...|..-.++.-+.|+.+.+-+++.+..+..-.++...+-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444433 578888888888776665333 3345556666777888888888888887764456666677777778888
Q ss_pred CCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009782 243 GDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319 (526)
Q Consensus 243 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 319 (526)
|+++.|..-.+.+.+ .++.......++|.+.|++.....++..|.+.|.--+...-..
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------- 227 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------- 227 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-------------------
Confidence 888888877765543 4566777888889999999999999999988876554432100
Q ss_pred HhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChh---HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH
Q 009782 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVV---SWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTF 393 (526)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 393 (526)
...+|+.+++-....+..+.-...++..+. .++. +|..-+--|++.++|.++..+..+++..|+
T Consensus 228 ------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---- 297 (400)
T COG3071 228 ------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---- 297 (400)
T ss_pred ------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----
Confidence 122334444444444444444445555542 1111 122222225555666666666666666655
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHG 473 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 473 (526)
...+-.+.+-++...-.+..+...+.++. ++..+.+|...|.+.+.|.+|.+.|+.+++..|+..+|.-+..++.+.|
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 22223455666777666666666664333 3466677777788888888888888777777788888888888888888
Q ss_pred ChHHHHHHHHHHHc
Q 009782 474 NVCMGETAAQKLFE 487 (526)
Q Consensus 474 ~~~~a~~~~~~~~~ 487 (526)
+..+|.+..++.+.
T Consensus 376 ~~~~A~~~r~e~L~ 389 (400)
T COG3071 376 EPEEAEQVRREALL 389 (400)
T ss_pred ChHHHHHHHHHHHH
Confidence 88888777777764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-10 Score=100.99 Aligned_cols=419 Identities=11% Similarity=0.042 Sum_probs=269.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~ 172 (526)
+-.-.+-=...+++..|..+|+..+... ..+...|...+.+=.++..+..|..+|++....-|.+ ..|.-.+-.=-..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3333333344566777777887777655 5566677777777777777888888887766554432 3355555555556
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 252 (526)
|++..|..+|++-.+ ..|+...|.+.++.-.+.+.++.|..+++...-. .|++..|-.....=.+.|....|..+|
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 778888888877765 4678888888888777777888888887776643 577777777777777778777777777
Q ss_pred hhcCC------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc-HHHHHHHH---HHhhhhHHHHHH--------
Q 009782 253 DRIGN------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD-PVAISSIL---ANASLLRIGAQV-------- 314 (526)
Q Consensus 253 ~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll---~~~~~~~~a~~~-------- 314 (526)
....+ .+...+.+....-.++..++.|.-+|+-.++.-.+-. ...|.... ..+|+.......
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 66553 1223444444444556667777777766665421111 12222222 222433222221
Q ss_pred HHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChh---HHHHHHHh-----------cCCchHHHHHH
Q 009782 315 HGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVV---SWNSIIHA-----------HSKDHEALIYF 378 (526)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~li~~-----------~~~~~~a~~~~ 378 (526)
++..++ .-+.|-.+|--.++.-...|+.+...++|+.... |... .|.--|-. ..+.+.+.+++
T Consensus 311 YE~~v~-~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVS-KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHH-hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 111122 2234556666677777778888888888887653 2211 11111111 24556677777
Q ss_pred HHHHHCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 379 EQMERDGVLPDHLTFVS----LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 379 ~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+..++. ++....||.- ...--.++.++..|.+++..+. |.-|-..+|...|..=.+.+.++.+..+|.+-+.
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777762 3333345443 2333346778888888888887 8888888888888888888888888888877788
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 455 FEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 455 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..|.. .+|......-...|+.+.|..+|+-++..... ....|...+..-...|.++.|..+++++.++
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 88854 88888877778888888888888888764321 1334666677777888888888888888765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-09 Score=94.71 Aligned_cols=413 Identities=13% Similarity=0.099 Sum_probs=269.4
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
..++++..|..+++.......+ +...+-.-+..=.+...+..|..+++.....- +.-...|-..+.+=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 3566777888888888766533 56666667777778888888999998887753 222344555555556678889999
Q ss_pred HHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh-CC
Q 009782 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF-GF 225 (526)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~ 225 (526)
++|++-.+..|+..+|++.|..=.+-+.++.|..++++..- +.|+..+|.-..+.-.+.|+...+..+|....+. |-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99988888888888899999888888889999999988876 4588888887777777888888888888776653 21
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhhc----CC----------------------------------------C--
Q 009782 226 -GFDGFVLNALVDMYAKCGDIVKARTVFDRI----GN----------------------------------------K-- 258 (526)
Q Consensus 226 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~----------------------------------------~-- 258 (526)
..+...+.++...=.++..++.|.-+|+-. ++ .
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 112233444444334445555555444322 11 1
Q ss_pred -CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH-----HHHHHH--HHh------hhhHHHHHHHHHHHHhCCC
Q 009782 259 -DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV-----AISSIL--ANA------SLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 259 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll--~~~------~~~~~a~~~~~~~~~~~~~ 324 (526)
|-.+|-..++.--..|+.+...++|++.... ++|-.. -|.-+- -+| .+.+.+.+++...++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 3345666666666778888888888887664 344221 111111 111 677777888877777 334
Q ss_pred CchhHHhH----HHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCC-CHHHHH
Q 009782 325 WDLCIANS----LIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLP-DHLTFV 394 (526)
Q Consensus 325 ~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p-~~~~~~ 394 (526)
...+++.- ....-.++.++..|.+++-...- |...+|..-|.. ++.++....+++..++ ..| |..+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 34444443 33444567788888888765542 555555555544 6777778888888777 344 445777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH----
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY---- 470 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~---- 470 (526)
.....=...|+.+.|..+|.-+.....+.-....|...|+.=...|.+++|..+|.+.+...+...+|.++...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7776667778888888888887765333333445566666666778888888888666666666666666654332
Q ss_pred -hcC-----------ChHHHHHHHHHHHc
Q 009782 471 -LHG-----------NVCMGETAAQKLFE 487 (526)
Q Consensus 471 -~~g-----------~~~~a~~~~~~~~~ 487 (526)
+.+ +...|..+|+++..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 233 45567777777654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-11 Score=114.90 Aligned_cols=274 Identities=12% Similarity=-0.064 Sum_probs=136.1
Q ss_pred ccCChHHHHHHHHHHhhhccCCCh-hHHHHHHHHHHhcCChhHHHHHHhccccCCCCcc--cHHHHHHHHHhcCChHHHH
Q 009782 103 QLKAVEHGIKLHRLIPTNLLRKNK-GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAF--PWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~ 179 (526)
..|+++.|.+.+....+.. |+. ..+-....+....|+.+.|.+.+++..+..|+.. ..-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455666666555544432 222 2222333444555666666666655544333321 1222345555556666666
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH-------HHHHHHHHHhcCCHHHHHHHH
Q 009782 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFV-------LNALVDMYAKCGDIVKARTVF 252 (526)
Q Consensus 180 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~~~g~~~~A~~~~ 252 (526)
+.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.++.++... +..++..-......+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666655543 22333455555555666666666666666655543222211 111111111122233444444
Q ss_pred hhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH--HHHH--HHHh--hhhHHHHHHHHHHHHhCC
Q 009782 253 DRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA--ISSI--LANA--SLLRIGAQVHGWVLRRGV 323 (526)
Q Consensus 253 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l--l~~~--~~~~~a~~~~~~~~~~~~ 323 (526)
+..++ .+...+..+...+...|+.++|.+.+++..+.. ||... +..+ +..+ ++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 44443 255566666666666666666666666666542 33221 0111 1111 44455555555554432
Q ss_pred CCch--hHHhHHHHHHHhcCChHHHHHHhc--cCC--CCChhHHHHHHHh---cCCchHHHHHHHHHH
Q 009782 324 EWDL--CIANSLIVVYSKDGKLDQACWLFD--HMP--QKDVVSWNSIIHA---HSKDHEALIYFEQME 382 (526)
Q Consensus 324 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~--~~~~~~~~~li~~---~~~~~~a~~~~~~m~ 382 (526)
+-|+ ....++...+.+.|++++|.+.|+ ... .|+...+..+... .|+.++|.+++++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233 455677777777888888888777 332 3655554443333 577777777777643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-11 Score=101.33 Aligned_cols=284 Identities=15% Similarity=0.127 Sum_probs=192.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCc--hhHHHHHHHHHHhcCCHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFD--GFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~A 248 (526)
+++.++|.++|-+|.+.. +-+..+..+|.+.|.+.|..|.|+++++.+.+..- +.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567888888888888742 22334556677888888889999988888876431 111 23445677788899999999
Q ss_pred HHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC
Q 009782 249 RTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 249 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 325 (526)
+++|..+.+.+. .....|+..|-...+|++|+++-+++.+.+-.+...-..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-------------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-------------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH--------------------------
Confidence 999988887433 456668889999999999999998888765444433321
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCCh--hHHHHHHH----hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV--VSWNSIIH----AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
..|.-+...+....+++.|..++.+..+.|. +--++++. ..|++++|.+.++...+.+..--..+...|..+
T Consensus 181 --qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 --QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred --HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2234455555555666666666665554222 21122211 146666677777777776555555678889999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCChH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL---HGNVC 476 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~ 476 (526)
|.+.|+.++....+..+.+. .++...-..+.+.-....-.+.|...+.+.+..+|+...+..++..-.. .|...
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k 335 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAK 335 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchh
Confidence 99999999999999998864 4444444555555556666777877777888889999888888876543 33455
Q ss_pred HHHHHHHHHHc
Q 009782 477 MGETAAQKLFE 487 (526)
Q Consensus 477 ~a~~~~~~~~~ 487 (526)
+....++++..
T Consensus 336 ~sL~~lr~mvg 346 (389)
T COG2956 336 ESLDLLRDMVG 346 (389)
T ss_pred hhHHHHHHHHH
Confidence 55566666653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-10 Score=103.15 Aligned_cols=330 Identities=13% Similarity=0.065 Sum_probs=209.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFD-GFVLNALVDMY 239 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 239 (526)
+-...+-|.++|++++|++.|.+..+ ..|| ..-|.....+|...|+++++.+--...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 33445567778888888888888876 4577 566677777777888888877766666554 333 34555666667
Q ss_pred HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHH--------HHH-c--CCCCcHHHHHHHHHHh-h-
Q 009782 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG--------MIL-N--GFDPDPVAISSILANA-S- 306 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~-~--~~~p~~~~~~~ll~~~-~- 306 (526)
-..|++++|+.=. |-..+...+....-..-+.+++++ -.. . .+-|+.....+.++.+ .
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7777777765321 112222222222222222222222 111 1 2446665555555444 0
Q ss_pred -------hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC-------C---CChh----HHHHHH
Q 009782 307 -------LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP-------Q---KDVV----SWNSII 365 (526)
Q Consensus 307 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~---~~~~----~~~~li 365 (526)
..+++........+.-..... ..+..|...+.+-. . -|.. .-..++
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~-------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLE-------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCc-------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 111111111111110000000 01222222221110 0 0110 112222
Q ss_pred Hh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhc
Q 009782 366 HA-----HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRA 439 (526)
Q Consensus 366 ~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 439 (526)
.+ .|+.-.|..-|+..+.....++.. |.-+...|....+.++..+.|.++.+ +.| |+.+|..-.+.+.-.
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHH
Confidence 33 577788999999998854444332 76777779999999999999999975 445 677777777788888
Q ss_pred CChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 440 GLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 440 g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+++++|..-|.+.+.+.|+. ..|..+..+..+.++++++...|++..+..|.-+..|+..+.++...+++++|.+.|+.
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999999999999999965 77888888888999999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 009782 519 LVD 521 (526)
Q Consensus 519 m~~ 521 (526)
..+
T Consensus 488 ai~ 490 (606)
T KOG0547|consen 488 AIE 490 (606)
T ss_pred HHh
Confidence 765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-08 Score=95.16 Aligned_cols=433 Identities=13% Similarity=0.095 Sum_probs=259.6
Q ss_pred CCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHH--hcC
Q 009782 63 AFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYA--TFG 140 (526)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g 140 (526)
+..+.+.+++++|++...++...+ +-+...+..-+-++.+.+.+++|+++.+.-... ..+...+ +=.+|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 344567899999999999999887 336777777788889999999999655432211 1111111 345554 688
Q ss_pred ChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH-hccCChHHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC-AGLGLIRVGEKVHLD 219 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~ 219 (526)
+.|+|+..++.....++ .....-...+-+.|++++|+++|+.+.+.+. + .+..-+++- ...+-.-.+ +.
T Consensus 94 k~Dealk~~~~~~~~~~--~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-d---d~d~~~r~nl~a~~a~l~~----~~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDD--KLLELRAQVLYRLERYDEALDIYQHLAKNNS-D---DQDEERRANLLAVAAALQV----QL 163 (652)
T ss_pred cHHHHHHHHhcccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-c---hHHHHHHHHHHHHHHhhhH----HH
Confidence 99999999995554444 3455566778899999999999999987643 2 222222211 111110111 12
Q ss_pred HHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHhhcC--------CCCc----------ccHHHHHHHHHhCCChHH
Q 009782 220 AVRFGFGFDGFVLNAL---VDMYAKCGDIVKARTVFDRIG--------NKDL----------ISYNSMLTGYIHHGLLVE 278 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~g~~~~ 278 (526)
+......| ..+|..+ .-.++..|++.+|+++++... ..|. ..--.|.-.+-..|+..+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33333333 2233333 345667899999999998772 2211 122335557788999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHH---HHHh---hhhH--HHHHHHH-----------HHHHhCCCCchhHHhHHHHHHHh
Q 009782 279 AFDIFRGMILNGFDPDPVAISSI---LANA---SLLR--IGAQVHG-----------WVLRRGVEWDLCIANSLIVVYSK 339 (526)
Q Consensus 279 a~~~~~~m~~~~~~p~~~~~~~l---l~~~---~~~~--~a~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~ 339 (526)
|..++...+... .+|....... |-+. .++- .....++ .+....-.-....-+.++..|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999998875 2333222221 1111 1100 0111111 1111111111111223344443
Q ss_pred cCChHHHHHHhccCCCC-ChhHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009782 340 DGKLDQACWLFDHMPQK-DVVSWNSIIHAH-----SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 413 (526)
+.-+.+.++....... ....+.+++... ..+.++.+++...-+....-...+....+......|+++.|.+++
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4556677777666642 233444444442 234567777777665432223446666677788899999999999
Q ss_pred H--------HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCCCH-HHHHHHHHHHHhcCChHH
Q 009782 414 S--------VMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEASP-VVWGALLYACYLHGNVCM 477 (526)
Q Consensus 414 ~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~ 477 (526)
. .+.+- +..|. +...+...+.+.++-+.|.+++.+++ ...+.. .++.-+...-.+.|+.++
T Consensus 400 ~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 9 54443 44444 44566677777777666666664444 223322 344444445567899999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
|...++++++.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999999999999885 45666555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-10 Score=103.27 Aligned_cols=256 Identities=13% Similarity=0.029 Sum_probs=180.1
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
+.........-+...+++.+..++.+...+. +..++...+ -|..+ |+...-..+-..+++. .+..+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~--~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPL--HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHH--HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 3444555566677788888888888887765 333333222 22222 4433333333344433 345677888888
Q ss_pred HHHHhcCChHHHHHHhccCCCCCh------hHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 009782 335 VVYSKDGKLDQACWLFDHMPQKDV------VSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 408 (526)
-.|.-.|+.++|.+.|.+...-|. ..|..-...-+..++|+..+...-+. ++-...-+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 888888999999999987664222 23333333456778888888776552 11111223334445777899999
Q ss_pred HHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 009782 409 GERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEA-SPVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~ 479 (526)
|.++|.++. ++.| |+..++-+.-.....+.+.+|..+|...+ ...+ -..+++.|+.+|.+.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999987 5666 67777777777777889999999985555 1122 3367899999999999999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 480 TAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+++++.+.|.+..++..++-+|...|+++.|.+.|.+...
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-10 Score=99.53 Aligned_cols=278 Identities=13% Similarity=-0.002 Sum_probs=160.5
Q ss_pred cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC--CCCcccHHHHHHHHHhcCChHHHHHH
Q 009782 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR--TAFAFPWNSLISGYAELGEYEDAIAL 181 (526)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 181 (526)
.|++.+|+++...-.+.+-.| ...|..-..+-...|+.+.+-.++.+..+. +++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666666655554222 223333344445566666666666666555 33334455555666666666666666
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 182 YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-------FVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 182 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
+.++.+.+ +-.........++|.+.|++.....++..+.+.|+-.|. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666543 223345555666666666666666666666666643332 3456666666555666666666666
Q ss_pred cCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--hhhHHHHHHHHHHHH-hCCCCchh
Q 009782 255 IGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA--SLLRIGAQVHGWVLR-RGVEWDLC 328 (526)
Q Consensus 255 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~a~~~~~~~~~-~~~~~~~~ 328 (526)
.+. .++..-..++.-+.+.|+.++|.++..+..+.+..|+..+ ++... ++.+.-.+..+...+ .+.. +.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LIPRLRPGDPEPLIKAAEKWLKQHPED--PL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HHhhcCCCCchHHHHHHHHHHHhCCCC--hh
Confidence 653 4566666777788888888888888888887776666222 22222 333333333333322 2222 25
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 408 (526)
.+.+|...|.+.+.|.+|...|+... ...|+..+|+.+.+++.+.|+..+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl------------------------------~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAAL------------------------------KLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH------------------------------hcCCChhhHHHHHHHHHHcCChHH
Confidence 55666666666666666666665322 145666666666666666666666
Q ss_pred HHHHHHHHHH
Q 009782 409 GERLFSVMVE 418 (526)
Q Consensus 409 a~~~~~~~~~ 418 (526)
|.+..++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-09 Score=100.67 Aligned_cols=421 Identities=11% Similarity=-0.001 Sum_probs=233.2
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--C
Q 009782 80 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--A 157 (526)
Q Consensus 80 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~ 157 (526)
.++....++.++..|..+.-++.+.|+++.+.+.|++....- ......|..+-..|..+|.-..|..+++.-.... |
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 333334455566677777767777777777777776665432 2334566666666666777777777776654443 2
Q ss_pred Cc-ccHHHHHHHHHh-cCChHHHHHHHHHHHHc--CC--CCCcchHHHHHHHHhcc----C-------ChHHHHHHHHHH
Q 009782 158 FA-FPWNSLISGYAE-LGEYEDAIALYFQMEEE--GV--EPDQFTFPRVLKACAGL----G-------LIRVGEKVHLDA 220 (526)
Q Consensus 158 ~~-~~~~~li~~~~~-~~~~~~a~~~~~~m~~~--~~--~p~~~t~~~ll~~~~~~----g-------~~~~a~~~~~~~ 220 (526)
+. ..+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|... . ...++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 21 222222223332 35555555555554441 11 11222333333333211 1 123455555555
Q ss_pred HHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCc
Q 009782 221 VRFGF-GFDGFVLNALVDMYAKCGDIVKARTVFDRIG----NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPD 294 (526)
Q Consensus 221 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~ 294 (526)
.+.+. .|++..| +.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+..... |....
T Consensus 471 v~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 471 VQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 55442 2333222 3334555666666666655443 245566777777777777777777776655443 21000
Q ss_pred HHHHHHHH-HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHH------hcCChHHHHHHhccCC---C---CChhHH
Q 009782 295 PVAISSIL-ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS------KDGKLDQACWLFDHMP---Q---KDVVSW 361 (526)
Q Consensus 295 ~~~~~~ll-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~---~---~~~~~~ 361 (526)
......=| ..+++.+++......+. ..+- ..|+-....+....+. . ..+.++
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L---------------~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKL---------------ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHH---------------HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 00000000 00133332222222211 1111 1111122222222221 0 111122
Q ss_pred HHHHHhc-CCchHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009782 362 NSIIHAH-SKDHEALIYFEQMERDGVLP--D------HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432 (526)
Q Consensus 362 ~~li~~~-~~~~~a~~~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (526)
..+..-. .+...+..-.. |...-+.| + ...|......+.+.+..++|...+.++.. -.+.....|...
T Consensus 614 r~ls~l~a~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred HHHHHHHHhhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 2111110 11111000000 11111122 2 22455666778888999999988888864 233467777778
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHH--HHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGET--AAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
...+...|.+++|.+.|..++..+|+. ....++...+.+.|+...|.. ++..+++++|.++.+|..++.++.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 888999999999999999999999965 888999999999999888887 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009782 510 DDVERVERMLVD 521 (526)
Q Consensus 510 ~~A~~~~~~m~~ 521 (526)
++|.+.|+....
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-11 Score=115.70 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 009782 181 LYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL 260 (526)
Q Consensus 181 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 260 (526)
++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+..+.++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4445555566666666666666666666666655 5555555555555555666666555555555444 4455
Q ss_pred ccHHHHHHHHHhCCChHH
Q 009782 261 ISYNSMLTGYIHHGLLVE 278 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~ 278 (526)
.+|+.|..+|..+||...
T Consensus 84 Dtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hHHHHHHHHHHhccchHH
Confidence 566666666666665443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-10 Score=109.70 Aligned_cols=241 Identities=20% Similarity=0.227 Sum_probs=166.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC----------CCcc-cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN----------KDLI-SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS 300 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 300 (526)
...+...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++...
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i----------- 270 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI----------- 270 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------
Confidence 33355555555555555555543322 1121 2234666788888888888888887652
Q ss_pred HHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHH
Q 009782 301 ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQ 380 (526)
Q Consensus 301 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~ 380 (526)
.+.......+.-..+++.|..+|.+.|++++|...++ .|+++++.
T Consensus 271 --------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e---------------------~Al~I~~~ 315 (508)
T KOG1840|consen 271 --------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE---------------------RALEIYEK 315 (508)
T ss_pred --------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH---------------------HHHHHHHH
Confidence 1111111111123456778889999999999999887 46666666
Q ss_pred HHHCCCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCc----hhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 381 MERDGVL-PDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYG--ISPR----VEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 381 m~~~~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
. .|.. |... .++.+...|...+++++|..+++...+.+. +.++ ..+++.|...|...|++++|.++++++
T Consensus 316 ~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 316 L--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred h--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 2 2222 2332 466777778889999999999998876543 2222 467899999999999999999999766
Q ss_pred c--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CcchHHHHHHHHHhcCChHHHHHHH
Q 009782 453 M--------EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFEL----EPD---NEHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 453 ~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
+ +..+. ...++.+...|.+.+++.+|.++|.+...+ .|+ ...+|..|+.+|.+.|++++|.++.
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6 22333 367888999999999999999999887663 344 4556889999999999999999998
Q ss_pred HHHH
Q 009782 517 RMLV 520 (526)
Q Consensus 517 ~~m~ 520 (526)
+.+.
T Consensus 474 ~~~~ 477 (508)
T KOG1840|consen 474 EKVL 477 (508)
T ss_pred HHHH
Confidence 8775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-07 Score=89.21 Aligned_cols=277 Identities=11% Similarity=0.117 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc-------cHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----------
Q 009782 231 VLNALVDMYAKCGDIVKARTVFDRIGNKDLI-------SYNSMLTGYIHHGLLVEAFDIFRGMILNGFD----------- 292 (526)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------- 292 (526)
.|..+.+.|-..|+++.|..+|++..+-+-. +|......-.++.+++.|++++++...-.-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 4556677777888888888888877764333 4444445555667777777777665432111
Q ss_pred CcHHH---------HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC----CChh
Q 009782 293 PDPVA---------ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ----KDVV 359 (526)
Q Consensus 293 p~~~~---------~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 359 (526)
+.... |.-+..++|-++....+++.+.+..+.....+.| ....+-...-+++++++|++-.. |++.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 11111 2222344577788888888888776653333332 33344455567888888887654 5543
Q ss_pred -HHHHHHHh----cCC--chHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHhcCCCCc--hhH
Q 009782 360 -SWNSIIHA----HSK--DHEALIYFEQMERDGVLPDHLTFVSLLS--ACAHLGSVKVGERLFSVMVEKYGISPR--VEH 428 (526)
Q Consensus 360 -~~~~li~~----~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~ 428 (526)
.|+.-+.- ||. .+.|..+|++..+ |.+|...-+.-|+- .=.+.|....|+.+++++.. ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 45443332 433 3778888888888 56665543222222 22345788888888888765 56653 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY---ACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIKIY 503 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 503 (526)
|+..|.--...=-+.....+|++++..-|+...-...+. .-.+.|..+.|..+|...-++-++ +...|...-..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 676665444444445556667777776677654444433 346788888888888877775433 344466666666
Q ss_pred HhcCChHH
Q 009782 504 GNAGRLDD 511 (526)
Q Consensus 504 ~~~g~~~~ 511 (526)
.+-|+-+-
T Consensus 705 vrHGnedT 712 (835)
T KOG2047|consen 705 VRHGNEDT 712 (835)
T ss_pred HhcCCHHH
Confidence 67777433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.6e-10 Score=95.57 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=201.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCc------ccHHHHHHHHHhCCChHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-KDL------ISYNSMLTGYIHHGLLVEA 279 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~a 279 (526)
.++.|+|.++|-+|.+.. +-+..+.-+|.+.|-+.|..|+|+++-+.+.+ ||. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 478899999999998753 44556677888999999999999999987765 443 2334566778888999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChh
Q 009782 280 FDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359 (526)
Q Consensus 280 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 359 (526)
+.+|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+..
T Consensus 127 E~~f~~L~de~ef---------------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 127 EDIFNQLVDEGEF---------------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHhcchhh---------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 9999888775311 1122345677777777888887777766654444
Q ss_pred HHHHHHHh-----------cCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh
Q 009782 360 SWNSIIHA-----------HSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE 427 (526)
Q Consensus 360 ~~~~li~~-----------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 427 (526)
.|+..|.- -.+.+.|..++++..+. .|+.. .-..+.+.....|+++.|.+.++...+. +..--..
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~e 250 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSE 250 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHH
Confidence 44433332 24557789999988773 44443 4445667788999999999999999876 4333467
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH---
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG--- 504 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--- 504 (526)
+...|..+|...|+.++....+.+.+...+....-..+...-....-.+.|...+.+-+...|.--. +..++..-.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~da 329 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccc
Confidence 7788999999999999999999888888888877777777766677778888888888888888444 566665543
Q ss_pred hcCChHHHHHHHHHHHhC
Q 009782 505 NAGRLDDVERVERMLVDR 522 (526)
Q Consensus 505 ~~g~~~~A~~~~~~m~~~ 522 (526)
..|+..+-..+++.|+..
T Consensus 330 eeg~~k~sL~~lr~mvge 347 (389)
T COG2956 330 EEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cccchhhhHHHHHHHHHH
Confidence 244567777777777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-10 Score=101.10 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=156.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (526)
..+..+...+...|++++|.+.+++..+.. |+ +...+..+...|...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-------------------------------~~~~~~~la~~~~~~ 78 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-------------------------------DYLAYLALALYYQQL 78 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-------------------------------cHHHHHHHHHHHHHc
Confidence 456667777888888888888888776542 22 233445677788888
Q ss_pred CChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 009782 341 GKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420 (526)
Q Consensus 341 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 420 (526)
|++++|.+.+++.. +. .+.+...+..+...+...|++++|.+.++.+.+..
T Consensus 79 ~~~~~A~~~~~~al----------------------------~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 79 GELEKAEDSFRRAL----------------------------TL-NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred CCHHHHHHHHHHHH----------------------------hh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 88888888776543 21 12244567777888889999999999999998642
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
........+..+...+...|++++|...+.+.+...|+ ...+..+...+...|++++|...++++.+..|.++..+..+
T Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (234)
T TIGR02521 130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG 209 (234)
T ss_pred ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22334567778888999999999999999888887775 46788888999999999999999999999888888888899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++...|+.++|..+++.+...
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-08 Score=93.56 Aligned_cols=415 Identities=15% Similarity=0.082 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 148 (526)
.+++..-+.+.+...+. .+-...|....--.+...|+-++|.+..+...+.. ..+...|..+.-.+-...++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45666666666666663 22244555444445566788888888877776643 23334555555555556788888888
Q ss_pred HhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhC-C
Q 009782 149 FDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFG-F 225 (526)
Q Consensus 149 ~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~ 225 (526)
|......+++- ..|.-+.-.-++.|+++.......++.+. .|+ ...|.....++.-.|+...|..++++..+.. -
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88877766543 55666666667778888887777777764 233 3456677777777888888888888877654 2
Q ss_pred CCchhHHHHHH------HHHHhcCCHHHHHHHHhhcCCC--Cc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 226 GFDGFVLNALV------DMYAKCGDIVKARTVFDRIGNK--DL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 226 ~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
.|+...+.... ....+.|..++|.+.+..-... |- ..-..-...+.+.++.++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 45554443322 3345667777777777665432 22 22234455677788888888888888776 46666
Q ss_pred HHHHHHHHh-hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------CChhHHHHHHHhc
Q 009782 297 AISSILANA-SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------KDVVSWNSIIHAH 368 (526)
Q Consensus 297 ~~~~ll~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~ 368 (526)
-|...+..+ |.+... .+....+|....+ |--... .++.+-
T Consensus 254 ~Yy~~l~~~lgk~~d~-------------------------------~~~lk~ly~~ls~~y~r~e~p~Rlpl-svl~~e 301 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDM-------------------------------LEALKALYAILSEKYPRHECPRRLPL-SVLNGE 301 (700)
T ss_pred HHHHHHHHHHHHHhhh-------------------------------HHHHHHHHHHHhhcCcccccchhccH-HHhCcc
Confidence 665444332 311111 1111122222211 000000 111111
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcC----------CCCchh--HHHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE---KYG----------ISPRVE--HYACMV 433 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~----------~~p~~~--~~~~l~ 433 (526)
.-.+...+++..+.+.|+.+-...+.+|-. .-...+-.+++.-.+.. ..| -+|... ++..++
T Consensus 302 el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred hhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 111345566677777777654433333322 11111111111111111 000 134443 345677
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
..|-+.|+++.|...+..+++..|+. ..|..=.+.+...|+.++|...++++.+++..|..+-..-+.-..++++.++|
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHH
Confidence 88889999999999998889888876 66767777888899999999999999999877777555777888889999999
Q ss_pred HHHHHHHHhCCC
Q 009782 513 ERVERMLVDRGL 524 (526)
Q Consensus 513 ~~~~~~m~~~g~ 524 (526)
.++.-...+.|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 988887776653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-09 Score=104.68 Aligned_cols=245 Identities=16% Similarity=0.160 Sum_probs=176.6
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHh-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC-
Q 009782 195 FTFPRVLKACAGLGLIRVGEKVHLDAVRF-----G-FGFDGF-VLNALVDMYAKCGDIVKARTVFDRIGN-------KD- 259 (526)
Q Consensus 195 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~- 259 (526)
.|...+...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++++|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46677888999999999999999887764 2 133333 334477788899999999999987753 22
Q ss_pred ---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCc-hhHHhHHHH
Q 009782 260 ---LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWD-LCIANSLIV 335 (526)
Q Consensus 260 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 335 (526)
..+++.|..+|.+.|++++|...+++..+- ++..... ..+. ...++.+..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-------------------------~~~~~~~-~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-------------------------YEKLLGA-SHPEVAAQLSELAA 333 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------------------HHHhhcc-ChHHHHHHHHHHHH
Confidence 256788888999999999999998876542 1110000 0111 123456777
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFS 414 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 414 (526)
.++..+++++|..+++. +.+++...... ..|+ ..+++.|...|...|++++|.++++
T Consensus 334 ~~~~~~~~Eea~~l~q~---------------------al~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQK---------------------ALKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred HHHHhcchhHHHHHHHH---------------------HHHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 88889999999988873 33333311111 1112 3489999999999999999999999
Q ss_pred HHHHhc----C-CCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcC-------CCCCH-HHHHHHHHHHHhcCChHHHHH
Q 009782 415 VMVEKY----G-ISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKME-------FEASP-VVWGALLYACYLHGNVCMGET 480 (526)
Q Consensus 415 ~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~ 480 (526)
++.... | ..+ ....++.|...|.+.++..+|.++|.+..+ ..|+. .+|..|...|...|+++.|++
T Consensus 392 ~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 392 KAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 987652 1 122 245678889999999999999999966552 24554 889999999999999999999
Q ss_pred HHHHHHc
Q 009782 481 AAQKLFE 487 (526)
Q Consensus 481 ~~~~~~~ 487 (526)
+.+.+..
T Consensus 472 ~~~~~~~ 478 (508)
T KOG1840|consen 472 LEEKVLN 478 (508)
T ss_pred HHHHHHH
Confidence 9998874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-10 Score=111.36 Aligned_cols=213 Identities=13% Similarity=0.028 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH---------ccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC
Q 009782 70 QALDSIIQDLESSVQNGITVQTETFASLLETCY---------QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140 (526)
Q Consensus 70 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 140 (526)
+.+++|+.++++..+..+. +...|..+..++. ..+++++|...++...+.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 4455666666666544322 2333333332222 1123555666666555543 344455555555555566
Q ss_pred ChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHL 218 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 218 (526)
++++|...|++....+|+. ..|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 6666666666655555432 34555555566666666666666665553 23321 22222333444555666666665
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
++.+...+.+...+..+..++...|+.++|...+.++...+. ...+.+...|+..| ++|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 555443122233344455555556666666666655443211 22333334444444 355554544443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-07 Score=88.62 Aligned_cols=438 Identities=11% Similarity=0.109 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
++.++.++.++.+| +..+-.-++.+...+++......|+..+. ..+.-...+|...+......|-++-+..
T Consensus 88 n~c~er~lv~mHkm--------pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~r 159 (835)
T KOG2047|consen 88 NNCFERCLVFMHKM--------PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIR 159 (835)
T ss_pred HHHHHHHHHHHhcC--------CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHH
Confidence 35566777776666 33466666677788888888888887765 3344456788888888888899999999
Q ss_pred HHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCcchHHHHHHHHhccCCh---HHHHHHHH
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG------VEPDQFTFPRVLKACAGLGLI---RVGEKVHL 218 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~ 218 (526)
++++...-.| ..-+-.|..+++.+++++|.+.+....... .+.+-..|..+....++.-+. -.+..+++
T Consensus 160 vyrRYLk~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 160 VYRRYLKVAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHHHhcCH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 9999888877 567788888999999999999888775431 233444555555555443322 22333444
Q ss_pred HHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhC----------------C----
Q 009782 219 DAVRFGFGFD--GFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHH----------------G---- 274 (526)
Q Consensus 219 ~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----------------g---- 274 (526)
.+... -+| ...|.+|.+.|++.|.+++|.++|++..+ ..+.-|+.+-++|++- |
T Consensus 238 ~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 238 GGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred hhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence 43332 233 35789999999999999999999987664 2333344444444331 1
Q ss_pred --ChHHHHHHHHHHHHcC-C----------CCcHHHHHHHHHHh-hhhHHHHHHHHHHHHhC-----CCCchhHHhHHHH
Q 009782 275 --LLVEAFDIFRGMILNG-F----------DPDPVAISSILANA-SLLRIGAQVHGWVLRRG-----VEWDLCIANSLIV 335 (526)
Q Consensus 275 --~~~~a~~~~~~m~~~~-~----------~p~~~~~~~ll~~~-~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 335 (526)
+++-.+.-|+.+...+ + ..+..++..-...+ |+..+....+.++++.- +..-...|..+.+
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 1222233333333321 0 00111111111122 45556666666665531 1123456788999
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHH---HHHH-------hcCCchHHHHHHHHHHHCCC----------CC-------
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWN---SIIH-------AHSKDHEALIYFEQMERDGV----------LP------- 388 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~-------~~~~~~~a~~~~~~m~~~~~----------~p------- 388 (526)
.|-+.|+++.|..+|++..+-+-.+-+ .+-. -+.+++.|+++++.....-- .|
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 999999999999999998873222211 1111 14555667777766543111 11
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGAL 465 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l 465 (526)
+...|...++.-...|-++....+++.+.+..-..|- .-......+-...-++++.++|++.+..-+-+ ..|+..
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 2234566666666778899999999999886222333 22233344556677899999998888765433 667776
Q ss_pred HHHHHh---cCChHHHHHHHHHHHccCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 466 LYACYL---HGNVCMGETAAQKLFELEPDNEH--NFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 466 ~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+.-+.+ ..+.+.|..+|+++++.-|+... .|-.....--+-|.-..|..++++..
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 665543 33689999999999997775322 23333333345688888888888864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-08 Score=85.75 Aligned_cols=260 Identities=10% Similarity=0.031 Sum_probs=128.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 009782 225 FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN---SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 301 (526)
++.|+.....+.+.+...|+.++|+..|+....-|+.+.. ...-.+.+.|+.+....+...+...
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------------ 295 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK------------ 295 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh------------
Confidence 3445555556666666666666666666555443332221 1122334455555555544444332
Q ss_pred HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhH------HHHHHHhcCCchHHH
Q 009782 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS------WNSIIHAHSKDHEAL 375 (526)
Q Consensus 302 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~~~a~ 375 (526)
.- -....|-.-.......++++.|+.+-++..+.+... -..++...++.++|.
T Consensus 296 --------------------~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 296 --------------------VK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred --------------------hh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 10 011111122223334445555555555444322111 112233345555555
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHH-HHHH-hcCChHHHHHHHHhh
Q 009782 376 IYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMV-NLYG-RAGLIDEAYSMIVEK 452 (526)
Q Consensus 376 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~ 452 (526)
-.|+.... +.| +...|.-|+.+|...|...+|.-.-+.... -++.+..+...+. ..+. .-.--++|..++++.
T Consensus 355 IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 355 IAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 55555444 343 334666666666666666666655555443 2333444443332 2221 112235666666666
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 453 MEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 453 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++|+- ...+.+...|...|..++++.++++.+...|++ .....|++.+...+.+++|.+.|......
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6666654 445555555666666666666666666666653 33666666666666666666666555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-08 Score=95.97 Aligned_cols=280 Identities=16% Similarity=0.092 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc-----CC
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF-----GL 141 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~ 141 (526)
...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ +.|..-|..+..+.+-. .+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 3558888888888775433 34345566677778888888899999888888876 55555566666665322 24
Q ss_pred hhHHHHHHhccccCCCCcccHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHH
Q 009782 142 IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE-DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDA 220 (526)
Q Consensus 142 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 220 (526)
.+...++++++....|...+...+.-.+.....+. .+...+..+...|+++ +|+.|-..|......+-..+++...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHH
Confidence 66777888877666654333333322233223333 3445556677777643 4555666666555555555555554
Q ss_pred HHh----C----------CCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cccHHHHHHHHHhCCChHHHHH
Q 009782 221 VRF----G----------FGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGNKD---LISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 221 ~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~ 281 (526)
... | -+|+. .++.-+...|-..|++++|++.+++..+.+ +..|..-.+.+-+.|++++|.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 432 1 12333 344555667777888888888887776532 3456667777778888888888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHh----hhhHHHHHHHHHHHHhCCCCchhHH--------hHHHHHHHhcCChHHHHHH
Q 009782 282 IFRGMILNGFDPDPVAISSILANA----SLLRIGAQVHGWVLRRGVEWDLCIA--------NSLIVVYSKDGKLDQACWL 349 (526)
Q Consensus 282 ~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~ 349 (526)
.++..... .+.+.-.|+-...+ |+++.|..++....+.+..|-.... .....+|.+.|++..|+..
T Consensus 250 ~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 250 AMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 87776653 33333333333222 6666666666666555543222111 2345566666766666665
Q ss_pred hccC
Q 009782 350 FDHM 353 (526)
Q Consensus 350 ~~~~ 353 (526)
|..+
T Consensus 328 ~~~v 331 (517)
T PF12569_consen 328 FHAV 331 (517)
T ss_pred HHHH
Confidence 5543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-12 Score=80.94 Aligned_cols=48 Identities=31% Similarity=0.740 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 009782 158 FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205 (526)
Q Consensus 158 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 205 (526)
+..+||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 345555555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-12 Score=79.93 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 009782 192 PDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241 (526)
Q Consensus 192 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 241 (526)
||..+|+++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-07 Score=88.78 Aligned_cols=408 Identities=12% Similarity=0.068 Sum_probs=238.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHH--HHHHH--Hh
Q 009782 96 SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS--LISGY--AE 171 (526)
Q Consensus 96 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--li~~~--~~ 171 (526)
+=+..+...+++++|.+....++..+ +.+...+..=+-+.+..+++++|+.+.+.-..... ++. +=.+| .+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~----~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV----INSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh----cchhhHHHHHHHHH
Confidence 33455667889999999999999877 66777777778888999999999977665443221 222 23344 46
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHH
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 249 (526)
.+..++|+..++ |..++.. +...-...+-+.|++++|..+|+.+.+++.+. |...-..++ ..+..-.+.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~----a~~a~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL----AVAAALQVQ 162 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH----HHHHhhhHH
Confidence 899999999988 3334433 66666677889999999999999998876432 111111121 112222222
Q ss_pred HHHhhcCCCCcccH---HHHHHHHHhCCChHHHHHHHHHHHHcC--------CC---------CcHHHHHHHHHHhhhhH
Q 009782 250 TVFDRIGNKDLISY---NSMLTGYIHHGLLVEAFDIFRGMILNG--------FD---------PDPVAISSILANASLLR 309 (526)
Q Consensus 250 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~---------p~~~~~~~ll~~~~~~~ 309 (526)
+.+........+| ......++..|++.+|++++....+.+ .. |-..-...++...|+.+
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 3444443223333 344567788999999999998883221 11 01111222333448899
Q ss_pred HHHHHHHHHHHhCCCCch---hHHhHHHHHHHhcCChH-HHHHHhccCCC---------------CChhHHHHHHHhc-C
Q 009782 310 IGAQVHGWVLRRGVEWDL---CIANSLIVVYSKDGKLD-QACWLFDHMPQ---------------KDVVSWNSIIHAH-S 369 (526)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~---------------~~~~~~~~li~~~-~ 369 (526)
++..++..+++....-.+ ...|.++..-....-++ .++..++.... .....-+.++..+ +
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999988888877643221 22222222211111111 12222221111 0111111222222 2
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHH
Q 009782 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAH--LGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 370 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 446 (526)
..+++.++....- +..|.. .+.+++..+.+ ...+.++.+++....+ +.+-+ ....-.+++.....|+++.|.
T Consensus 322 k~~q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 2233433333221 223333 34444444432 2257788888888766 34433 455567788889999999999
Q ss_pred HHHH--------hhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCC---CcchHHHHHHHHHhcCChHH
Q 009782 447 SMIV--------EKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFE----LEPD---NEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 447 ~~~~--------~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~ 511 (526)
+++. ......-.+.+...+...+.+.++.+.|..++..+.. ..+. -..++..++..-.+.|+-++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 9994 2223344456667777778888887777777777654 2222 22334445555567899999
Q ss_pred HHHHHHHHHhCC
Q 009782 512 VERVERMLVDRG 523 (526)
Q Consensus 512 A~~~~~~m~~~g 523 (526)
|..+++++.+.+
T Consensus 477 a~s~leel~k~n 488 (652)
T KOG2376|consen 477 ASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHHhC
Confidence 999999998743
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-08 Score=86.09 Aligned_cols=293 Identities=9% Similarity=0.006 Sum_probs=157.8
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHH
Q 009782 172 LGEYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDG-FVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~ 249 (526)
.++...|...+-.+... -++-|......+.+.+...|+.+.|...|+.....+ |+. .......-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 44444444444333332 245566677788888888888888888888776543 221 11122222345667777766
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC
Q 009782 250 TVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF--DPDPVAISSILANASLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 250 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 324 (526)
.+...+-.. ....|-.-.......+++..|+.+-++.++.+- .|-...-..++...++.++|.-.|+...... +
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 665555432 233444445556667788888888777665421 1112222233444466666665565554432 2
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-c
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLL-SACA-H 402 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~ 402 (526)
.+...|.-|+..|...|++.+|.-+-+...+ . +.-+..+...+. ..|. .
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~-----------~------------------~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIR-----------L------------------FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHH-----------H------------------hhcchhhhhhhcceeeccC
Confidence 3566777777777777777776654432211 1 111222222221 1111 1
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
...-++|..+++... .+.|+ ....+.+...+...|+.++++.++++.+...||....+.|...+...+.+.+|...
T Consensus 417 p~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 122355555555544 23443 33344555556666666666666655666666666666666666666666666666
Q ss_pred HHHHHccCCCCcchHHHH
Q 009782 482 AQKLFELEPDNEHNFELL 499 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l 499 (526)
|..++.++|.+..+...|
T Consensus 494 y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHhcCccchHHHHHH
Confidence 666666666655544433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-10 Score=95.56 Aligned_cols=222 Identities=11% Similarity=0.058 Sum_probs=175.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (526)
+.+.++|.+.|.+.+|.+.|+.-+..- |-+.+|..|-++|.+..+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~----------------------------------~~~dTfllLskvY~ridQP 272 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF----------------------------------PHPDTFLLLSKVYQRIDQP 272 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC----------------------------------CchhHHHHHHHHHHHhccH
Confidence 678899999999999999998877652 3344455677788888888
Q ss_pred HHHHHHhccCCC--CChhHHHHHH----HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009782 344 DQACWLFDHMPQ--KDVVSWNSII----HAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMV 417 (526)
Q Consensus 344 ~~A~~~~~~~~~--~~~~~~~~li----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 417 (526)
+.|+.++.+..+ |..+||-.=+ .+.++.++|.+++++..+.. ..+.....++...|.-.++++-|+.+++++.
T Consensus 273 ~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 273 ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 888888887765 6556654322 23677788888888887732 2244566667777888899999999999998
Q ss_pred HhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC--CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 418 EKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--EASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 418 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
+- |+. ++..|..+.-+|.-.+++|-++.-|.+++.. .|+. ..|..+.......||+..|.+.|+.++..+|++.
T Consensus 352 qm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 86 665 6778888888888899999999988776642 3443 7888888888899999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 494 HNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+++.|+..-.+.|+.++|..++......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999877654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-09 Score=94.59 Aligned_cols=196 Identities=15% Similarity=0.045 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~ 169 (526)
...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.+++.....|. ...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555666666777777777777666543 344556666666777777777777777766555432 24556666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 248 (526)
...|++++|.+.+++.......+ ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766532111 22344555566666777777777777666553 23345566666666667777777
Q ss_pred HHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 249 RTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 249 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
...+++..+ .+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666665432 2334445555666666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-09 Score=105.71 Aligned_cols=243 Identities=13% Similarity=0.018 Sum_probs=148.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCCh
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYA---------KCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLL 276 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 276 (526)
++++|...+++..+.. +.+...|..+..+|. ..+++++|...+++..+- +...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4567777777776653 223344544444433 223456666666665542 344555666666667777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC
Q 009782 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQK 356 (526)
Q Consensus 277 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 356 (526)
++|...|++..+.+ |+ +...+..+..++...|++++|...+++..
T Consensus 355 ~~A~~~~~~Al~l~--P~-------------------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-- 399 (553)
T PRK12370 355 IVGSLLFKQANLLS--PI-------------------------------SADIKYYYGWNLFMAGQLEEALQTINECL-- 399 (553)
T ss_pred HHHHHHHHHHHHhC--CC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 77777776666542 22 23344556667777777777777776544
Q ss_pred ChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHH
Q 009782 357 DVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVN 434 (526)
Q Consensus 357 ~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 434 (526)
+ ..|+.. .+..++..+...|++++|...++++.+. .+| +...+..+..
T Consensus 400 --------------------------~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~ 449 (553)
T PRK12370 400 --------------------------K--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVM 449 (553)
T ss_pred --------------------------h--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHH
Confidence 2 334322 2233344456678889999998888764 234 4555677888
Q ss_pred HHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCCcchHHHHHHHHHhcCChH
Q 009782 435 LYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE---PDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 510 (526)
+|...|+.++|.+.+.+.....|+. ...+.+...|...| +.|...++++++.. |.++. .+..+|.-.|+-+
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~ 524 (553)
T PRK12370 450 FLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAI 524 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhH
Confidence 8888999999999986666666665 44455555667666 47777777776633 43333 2555666667777
Q ss_pred HHHHHHHHHHhCC
Q 009782 511 DVERVERMLVDRG 523 (526)
Q Consensus 511 ~A~~~~~~m~~~g 523 (526)
.+..+ +++.+.|
T Consensus 525 ~~~~~-~~~~~~~ 536 (553)
T PRK12370 525 AEKMW-NKFKNED 536 (553)
T ss_pred HHHHH-HHhhccc
Confidence 66665 7776554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-08 Score=90.08 Aligned_cols=282 Identities=12% Similarity=0.042 Sum_probs=185.8
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
...-.-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=..+.+.- +....+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 44445556666777888888888777765 34555566666667777777766666666666552 45566777777777
Q ss_pred HhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc--CC-CCcHHHHHHHH-HHhhhhHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILN--GF-DPDPVAISSIL-ANASLLRIGA 312 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~ll-~~~~~~~~a~ 312 (526)
.-.|+..+|.+.|.+...-|. ..|-.....|+-.|..++|+..+...-+. |. .|. .|..+= ...++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHHHHHHHHhccHHHHH
Confidence 777888888888877665443 56777778888888888888777666543 21 121 111111 1114555555
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~ 392 (526)
+.|....... +.|+.+.+-+.-.....+.+.+|..+|+... ...+....... --..+
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l---------------------~~ik~~~~e~~-~w~p~ 457 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL---------------------EVIKSVLNEKI-FWEPT 457 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH---------------------HHhhhcccccc-chhHH
Confidence 5555444332 2345555555555556666666666665322 11111111111 13457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 470 (526)
++.|..+|.+.+.+++|+..++.... -.+-+..++.++.-.|...|+++.|.+.|.+++.++|+..+-..++..+.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88899999999999999999999986 34558899999999999999999999999999999999877766666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-07 Score=81.33 Aligned_cols=414 Identities=13% Similarity=0.070 Sum_probs=236.8
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHH-
Q 009782 86 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNS- 164 (526)
Q Consensus 86 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 164 (526)
|+....-.+.+++..+.+..+++.|.+++....+.. +.+....+.|..+|-+..++..|-..++.+....|...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444444456777777777788888888887776654 345666777777888888888888888888777664333332
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC--AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
-...+-+.+.+.+|+++...|... |+...-..-+.+. -..+++..+..+.++.-..| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 245566778888888888877642 2222222222222 24567777776666654322 333444444455677
Q ss_pred CCHHHHHHHHhhcCCC----CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHh--hhhHHHHHHH
Q 009782 243 GDIVKARTVFDRIGNK----DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA-ISSILANA--SLLRIGAQVH 315 (526)
Q Consensus 243 g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~--~~~~~a~~~~ 315 (526)
|+++.|.+-|+...+- ....||. .-+..+.|+++.|++...++.++|++..+.. ........ ..+.....+.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 8888888888776652 2244544 3345566788888888888887775422110 00000000 0000000000
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-----CChhHHH--HHHHhcCCchHHHHHHHHHHHCCCCC
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVVSWN--SIIHAHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~--~li~~~~~~~~a~~~~~~m~~~~~~p 388 (526)
... -+..+|.-...+.+.|+++.|.+-+.+|+- .|++|.. ++..+-++..+..+-+.-+...+.-
T Consensus 237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPf- 308 (459)
T KOG4340|consen 237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPF- 308 (459)
T ss_pred HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCC-
Confidence 000 012334445567788999999999999984 4555554 3444467777777777777664332
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHH-hcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS-PRVEHYACMVNLYG-RAGLIDEAYSMIVEKMEFEASPVVWGALL 466 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 466 (526)
...||..++-.||+..-++.|..++.+-... ... .+...|+ |++++. ..-..++|.+-+ +.+........-...+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL-~~La~~l~~kLRklAi 385 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKL-DGLAGMLTEKLRKLAI 385 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3458888888999998888888887654322 111 1333343 334433 344666776655 3221111111111111
Q ss_pred HH--HHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 467 YA--CYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 467 ~~--~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.. -...++ ...|++-|++.+++.-+ ....-.+.|++..++..+.++|+.-.+
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11 111111 22344445555554422 356677889999999999999886543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.3e-07 Score=78.13 Aligned_cols=272 Identities=11% Similarity=-0.014 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
...+++..|+.+++.-...+-.-...+-..+...+.+.|++++|...+..+.... .++...+..|.-.+.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3445666777766665543333222223333344556677777777777666543 444455555554445556677776
Q ss_pred HHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 009782 147 QVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226 (526)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 226 (526)
.+-....+.. ..-..|....-+.++-++-..+-+.+... ..--.++.+..-..-.+.+|.+++......+
T Consensus 112 ~~~~ka~k~p---L~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 112 SIAEKAPKTP---LCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHhhCCCCh---HHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6665553321 22333444444555555555444444321 1111223333333334566666666655432
Q ss_pred CchhHHHH-HHHHHHhcCCHHHHHHHHhhcCC--CC-cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHH-H
Q 009782 227 FDGFVLNA-LVDMYAKCGDIVKARTVFDRIGN--KD-LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISS-I 301 (526)
Q Consensus 227 ~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-l 301 (526)
|+-...|. +.-+|.+..-++-+.++++--.+ || ....|..+....+.-+-..|+.-.+++.+.+-. . ..+.. +
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~-~~f~~~l 259 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E-YPFIEYL 259 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c-chhHHHH
Confidence 22222222 23344555555555555543322 22 233333333333332223333333333332111 0 11111 1
Q ss_pred HHH----hhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC
Q 009782 302 LAN----ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 302 l~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
++. +.+-+.|.+++--+.+.- +..--.++-.|.+.+++.+|..+.+++.-
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~P 313 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDP 313 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCC
Confidence 111 023333444333332211 11223455678888888888888887764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-08 Score=95.46 Aligned_cols=256 Identities=16% Similarity=0.155 Sum_probs=168.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh-hhhHHHH
Q 009782 237 DMYAKCGDIVKARTVFDRIGN--KDL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA-SLLRIGA 312 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~a~ 312 (526)
..+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++.+ |+...|-..+..+ |...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc---
Confidence 345667888888888766544 233 345566778888888888888888888863 6666554433322 1000
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhcCCc----hHHHHHHHHHHHCCC
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKD----HEALIYFEQMERDGV 386 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----~~a~~~~~~m~~~~~ 386 (526)
+ ......+...++++++.+ |.......+.-.+... ..+..++..+..+|+
T Consensus 87 ---------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 87 ---------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred ---------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0 000122333333333322 1111111111111111 346677777888887
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-------------CCCCch--hHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY-------------GISPRV--EHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
++ +|+.|-..|......+-..+++....... .-+|.. .++..+.+.|-..|++++|++++.+
T Consensus 143 Ps---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 PS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred ch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 64 34444444555555555556666554321 112333 3446678889999999999999988
Q ss_pred hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 452 KMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 452 ~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
++...|.. ..|..-...+-+.|++.+|.+.++.+.++++.|..+-+-.+..+.+.|+.++|.+++......+.
T Consensus 220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999975 88888899999999999999999999999999999889999999999999999999988776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=91.87 Aligned_cols=231 Identities=12% Similarity=0.056 Sum_probs=179.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 009782 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILAN 304 (526)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 304 (526)
.|-..-+.+.++|.+.|.+.+|++.|+...+ +-+.||-.|-+.|.+..++..|+.++.+-.+. .|-.+||..
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~---- 294 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL---- 294 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----
Confidence 3445557789999999999999999987654 67789999999999999999999999987764 576666633
Q ss_pred hhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCC---hhHHHHHHHh--c-CCchHHHHHH
Q 009782 305 ASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKD---VVSWNSIIHA--H-SKDHEALIYF 378 (526)
Q Consensus 305 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~--~-~~~~~a~~~~ 378 (526)
-+...+-..++.++|.++|+...+.+ +....++-.. | ++.+-|+.++
T Consensus 295 ---------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 295 ---------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ---------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 23345555566666666666655422 2222222222 2 3446688888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 379 EQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 379 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
+++.+.|+. +...|+.+.-+|.-.+++|-++..|+++... .-.|+ ...|..+.......|++..|.+.|.-.+..+
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 888888876 6778888888899999999999999998875 34454 5678888888999999999999996677777
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 457 ASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 457 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
|+. ..++.|...-.+.|++++|..++..+..+.|+-
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 765 899999999999999999999999999998873
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-06 Score=82.55 Aligned_cols=428 Identities=16% Similarity=0.145 Sum_probs=264.9
Q ss_pred CCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChh
Q 009782 64 FPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLID 143 (526)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 143 (526)
..+...|+-++|.+....-.+..+. +.+-|..+--......++++|.+-|......+ +.|..++.-+.-.-+..|+++
T Consensus 49 L~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 49 LTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred chhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 3455678888999888877766554 56667777666777789999999999999876 667777776666667778888
Q ss_pred HHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCcchHHHHHH------HHhccCChHHHHH
Q 009782 144 EAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLK------ACAGLGLIRVGEK 215 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~------~~~~~g~~~~a~~ 215 (526)
..........+..|.. ..|..+..++--.|+...|..++++..+.. -.|+...|..... .....|..+.|.+
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 8888887777766654 678999999999999999999999998764 2466666544332 2346788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHH-HHHHhCCChHHHH-HHHHHHHHc--
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSML-TGYIHHGLLVEAF-DIFRGMILN-- 289 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~-- 289 (526)
.+..-... +......-.+-...+.+.+++++|..++..+.. ||...|+... .++.+-.+.-+++ .+|....+.
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 77655433 122222334556778899999999999999876 4445555444 4444344444444 566655443
Q ss_pred -CCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhc
Q 009782 290 -GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAH 368 (526)
Q Consensus 290 -~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 368 (526)
.-.|-.... .++..-.-.+....++....+.|+++ ++..+...|-.-...+ ++++ .+..|...+.+.
T Consensus 286 r~e~p~Rlpl-svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~----Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 286 RHECPRRLPL-SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEK----LVTSYQHSLSGT 353 (700)
T ss_pred ccccchhccH-HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHH----HHHHHHhhcccc
Confidence 111221111 12222344455666667777777654 3333333332222111 1111 112222222221
Q ss_pred CCc--hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChH
Q 009782 369 SKD--HEALIYFEQMERDGVLPDHL--TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLID 443 (526)
Q Consensus 369 ~~~--~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 443 (526)
+.+ .+.- .--.|+.. ++-.+...+-+.|+++.|..+++.+. +..|+ +..|..=.+.+...|.++
T Consensus 354 ~~f~~~D~~--------~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 354 GMFNFLDDG--------KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred cCCCccccc--------ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChH
Confidence 111 0000 00144443 45566777788888888888888887 44665 445555567778888888
Q ss_pred HHHHHHHhhcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHccCCC-------CcchHHHH--HHHHHhcCChHHHH
Q 009782 444 EAYSMIVEKMEFEASPVVWG-ALLYACYLHGNVCMGETAAQKLFELEPD-------NEHNFELL--IKIYGNAGRLDDVE 513 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l--~~~~~~~g~~~~A~ 513 (526)
+|..++.++-+.+......| -...-..+.++.++|.++.....+-+.+ -...|..+ +.+|.++|++-+|+
T Consensus 423 eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 423 EAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 88888866655544333333 5556667788888888877776553321 11223332 56788888887776
Q ss_pred HHHH
Q 009782 514 RVER 517 (526)
Q Consensus 514 ~~~~ 517 (526)
+=|.
T Consensus 503 Kkfh 506 (700)
T KOG1156|consen 503 KKFH 506 (700)
T ss_pred HHHh
Confidence 5443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-06 Score=85.06 Aligned_cols=416 Identities=12% Similarity=0.133 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhh-----------ccCCChhHHHHHHHHHHhc
Q 009782 71 ALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-----------LLRKNKGISSKLLRLYATF 139 (526)
Q Consensus 71 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~ 139 (526)
.++.+++.++.|...+++.|..+.-.+..-|...=-.+...++|+...+. ++.-|+.+.-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 35667777777777777777776666666666655666777777766541 3456777778889999999
Q ss_pred CChhHHHHHHhccccCC-----------------CC--------------------------------------ccc---
Q 009782 140 GLIDEAHQVFDQMSNRT-----------------AF--------------------------------------AFP--- 161 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~-----------------~~--------------------------------------~~~--- 161 (526)
|++.+.+++.++-.--+ |- +.+
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGA 817 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhh
Confidence 99999888865431000 10 000
Q ss_pred -----------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-hHHHHH--
Q 009782 162 -----------------------WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEK-- 215 (526)
Q Consensus 162 -----------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~-- 215 (526)
-+-|+.-.-+.++.+--+..++.....|. .|..|||++.+.|...++ ++.-++
T Consensus 818 LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN 896 (1666)
T KOG0985|consen 818 LLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKEN 896 (1666)
T ss_pred hhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccC
Confidence 00011111222333334445555566664 478888888888775543 221111
Q ss_pred -HHHHH------H-----------HhC--------CCCchhHHHHHHHHHHhcCC---HHHH--------HHHHhhcCC-
Q 009782 216 -VHLDA------V-----------RFG--------FGFDGFVLNALVDMYAKCGD---IVKA--------RTVFDRIGN- 257 (526)
Q Consensus 216 -~~~~~------~-----------~~g--------~~~~~~~~~~li~~~~~~g~---~~~A--------~~~~~~~~~- 257 (526)
.++.. . ++| +...-..|....+.+.+..| |.+. ..+.+.+.+
T Consensus 897 ~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~t 976 (1666)
T KOG0985|consen 897 PYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQT 976 (1666)
T ss_pred CcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHh
Confidence 01100 0 001 00011112222233333332 1222 123333221
Q ss_pred -----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------------CC--Cc-HHHHHHHHHHh-------
Q 009782 258 -----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNG-----------------FD--PD-PVAISSILANA------- 305 (526)
Q Consensus 258 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------------~~--p~-~~~~~~ll~~~------- 305 (526)
.|+...+.-+.++...+-+.+-.++++++.-.+ ++ |+ ...|..-+..+
T Consensus 977 al~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~ 1056 (1666)
T KOG0985|consen 977 ALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAE 1056 (1666)
T ss_pred cCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHH
Confidence 344445555566666666666666666554221 11 11 11244444333
Q ss_pred -----hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHH
Q 009782 306 -----SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIY 377 (526)
Q Consensus 306 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~ 377 (526)
+-.++|..+|+.. ..+....+.|+. .-+..+.|.++-++..+|. .|+.+-.+ -+...+|.+-
T Consensus 1057 iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHH
Confidence 3345555555443 223333333332 3466777777777666553 46666665 2444555554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 378 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
|-+ .-|+..|..+++.+.+.|.+++-..++..+.++ .-.|.+.+ .|+-+|++.++..+-.+++ ..|
T Consensus 1127 yik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi-----~gp 1192 (1666)
T KOG0985|consen 1127 YIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI-----AGP 1192 (1666)
T ss_pred HHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh-----cCC
Confidence 432 226678999999999999999999999988876 66776664 7899999999999988877 478
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+..-...++.-|...|.++.|.-+|.. ...|..|...+...|+|..|...-++.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888889999999999999999877763 566888888999999988887665554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-09 Score=86.07 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=117.7
Q ss_pred hHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHH
Q 009782 331 NSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVG 409 (526)
Q Consensus 331 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a 409 (526)
..|.-.|...|+...|..-+++..+ ..|+. .++..+...|.+.|..+.|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~------------------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A 88 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALE------------------------------HDPSYYLAHLVRAHYYQKLGENDLA 88 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH------------------------------hCcccHHHHHHHHHHHHHcCChhhH
Confidence 3466678888888888887776553 33443 3677777777888888888
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 009782 410 ERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
.+.|+.+.. +.| +..+.|.....+|..|++++|...|.+++. .|. ..+|..++.+..+.|+.+.|...+++
T Consensus 89 ~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 89 DESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred HHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 888888774 344 566777777778888888888888866664 332 26777777777788888888888888
Q ss_pred HHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 485 LFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 485 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.++++|+.+.+...+.......|++-.|..+++.....|
T Consensus 165 aL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 165 ALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 888888888888888888888888888888877776554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-07 Score=87.45 Aligned_cols=224 Identities=13% Similarity=0.005 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHHHHHhhCCC-CC--ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 68 KLQALDSIIQDLESSVQNGI-TV--QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.....+.++.-+.++..... .| ....|...-..+.+.|+.++|...|+...+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34677888888888876432 22 23457777778889999999999999999875 5678899999999999999999
Q ss_pred HHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 145 AHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 145 a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
|...|++..+.+|+. .+|..+...+...|++++|++.|+...+. .|+..........+...++.++|...+......
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999998887753 67888888899999999999999999875 455443333333445678899999999776543
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHH--HHHHHhhcCC-------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVK--ARTVFDRIGN-------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 294 (526)
. .++...+ .+...+ .|+... +.+.+..-.+ ....+|..+...+.+.|++++|...|++..+.+ .||
T Consensus 195 ~-~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 195 L-DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred C-CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2 3333322 233333 455433 3333332222 123578899999999999999999999998764 335
Q ss_pred HHHHH
Q 009782 295 PVAIS 299 (526)
Q Consensus 295 ~~~~~ 299 (526)
...+.
T Consensus 270 ~~e~~ 274 (296)
T PRK11189 270 FVEHR 274 (296)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-06 Score=82.88 Aligned_cols=384 Identities=16% Similarity=0.090 Sum_probs=218.9
Q ss_pred HhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc
Q 009782 117 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195 (526)
Q Consensus 117 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 195 (526)
+....+..+..+|..+.-+..++|+++.+.+.|++....-. ....|+.+-..+.-.|.-..|..+++.-....-.|+..
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33345567889999999999999999999999998754422 22679999999999999999999998776543334444
Q ss_pred -hHHHHHHHHh-ccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHH
Q 009782 196 -TFPRVLKACA-GLGLIRVGEKVHLDAVRF--GF--GFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTG 269 (526)
Q Consensus 196 -t~~~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 269 (526)
.+-..-+.|. +.+..+++..+..++.+. |. ......|-.+.-+|...-. +.+..+
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s------- 454 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS------- 454 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH-------
Confidence 3433344443 556777777776666652 11 1122233333333321100 000000
Q ss_pred HHhCCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHh-hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH
Q 009782 270 YIHHGLLVEAFDIFRGMILN-GFDPDPVAISSILANA-SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 347 (526)
-+.....++++.+++..+. +..|+...|.++-.+. ++++.|.+...+..+.+-..+...|..+.-++.-.+++.+|+
T Consensus 455 -eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 455 -ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 0011123444445544443 2334444444444333 555555555555555555555556666666666666666666
Q ss_pred HHhccCCCCChhHHHHHH-----H-hcCCchHHHHHHHHHHH---------------------CCC-----CC--CHHHH
Q 009782 348 WLFDHMPQKDVVSWNSII-----H-AHSKDHEALIYFEQMER---------------------DGV-----LP--DHLTF 393 (526)
Q Consensus 348 ~~~~~~~~~~~~~~~~li-----~-~~~~~~~a~~~~~~m~~---------------------~~~-----~p--~~~~~ 393 (526)
.+.+...+.-...|+.+. . .+++.++++.....+.. .|. .| ...++
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 655543321111111100 0 03333333333322221 000 11 01122
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHH
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPR--------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGA 464 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 464 (526)
..+..-....+....-... +.. ....|. ...|......+.+.++.++|...+.++-+..|-. ..|..
T Consensus 614 r~ls~l~a~~~~~~~se~~---Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK---LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred HHHHHHHHhhhhhcccccc---cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 2222111111100000000 111 122232 2345556677888899999988887888888854 77787
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHH--HHHHHHhCCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER--VERMLVDRGL 524 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~ 524 (526)
.+..+...|..++|.+.|..++.++|++..+...++.++.+.|+-.-|.. ++..+.+.+.
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 78888999999999999999999999999999999999999998777777 8888887664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=82.56 Aligned_cols=381 Identities=16% Similarity=0.122 Sum_probs=197.0
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
+-+.|++++|+..+..+.+..-. +....-.+.-...-.|.+.+|..+-....+ ++--...+...-.+.++-++-
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~-~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDA-PAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCC-CcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHH
Confidence 34789999999999998876543 444444444444457788888876654422 222222333444455665555
Q ss_pred HHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHH-HHhccCChHHHHHHHHHHHHhC
Q 009782 146 HQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLK-ACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~g 224 (526)
..+-+.+.+... ---+|.+..-..-.+.+|++++.+....+ |+-...|.-+. +|.+..-++.+.++++...+.
T Consensus 141 ~~fh~~LqD~~E---dqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 141 LTFHSSLQDTLE---DQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHhhhHH---HHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 555444433211 11233333333445677777777766542 34444444333 344556666666666655543
Q ss_pred CCCchhHHHHHHHHHHhc--CCH---------------------------------HHHHHHHhhcCCCCcccHHHHHHH
Q 009782 225 FGFDGFVLNALVDMYAKC--GDI---------------------------------VKARTVFDRIGNKDLISYNSMLTG 269 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~~--g~~---------------------------------~~A~~~~~~~~~~~~~~~~~li~~ 269 (526)
++.+....|.......+. |+. +.|++++-.+.+.=+..--.|+--
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheee
Confidence 233334444333333222 222 222222211111111222334445
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--------hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 009782 270 YIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA--------SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341 (526)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (526)
|.+.++..+|..+.+++.- ..|-......+..+. ..+.-|.+.|..+-+.+...|..
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI------------- 359 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI------------- 359 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc-------------
Confidence 6667777777766655422 233333332222211 12223333333332222222111
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 009782 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYG 421 (526)
Q Consensus 342 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 421 (526)
|...+-.+-+-.+.++++++-+++.+..--..-|... -.+..+++..|++.+|+++|-.+... .
T Consensus 360 --------------pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~-~ 423 (557)
T KOG3785|consen 360 --------------PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGP-E 423 (557)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcCh-h
Confidence 1111222222223445555656665555323333333 34677888889999999998877532 3
Q ss_pred CCCchhHH-HHHHHHHHhcCChHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 422 ISPRVEHY-ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVV-WGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 422 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
++ |..+| ..|.++|.++++++.|++++ -.+....+..+ +..+...|.+.+.+--|-+.|..+-.++|.
T Consensus 424 ik-n~~~Y~s~LArCyi~nkkP~lAW~~~-lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 424 IK-NKILYKSMLARCYIRNKKPQLAWDMM-LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hh-hhHHHHHHHHHHHHhcCCchHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 33 44444 56778889999999999888 33432223333 344445688888888888888888777776
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-07 Score=81.50 Aligned_cols=286 Identities=12% Similarity=0.013 Sum_probs=196.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHH-HHHHHHhc
Q 009782 61 QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSK-LLRLYATF 139 (526)
Q Consensus 61 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~ 139 (526)
.++..+++..++++|++++..-.+..++ +....+.+-.+|.+..++..|-.-++++-.. .|...-|.. -...+-+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3444567889999999999988877654 7778888888899999999999999988765 344333321 23455677
Q ss_pred CChhHHHHHHhccccCCCCcccHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 140 GLIDEAHQVFDQMSNRTAFAFPWNSLI--SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 140 g~~~~a~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
+.+..|+++...|.+. +....-..-+ ...-..+++..+..++++....| +..+.+.......+.|+.+.|.+-|
T Consensus 92 ~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 8899999999888765 2111111112 22335688888888888876432 4444444444455889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------CCc---------------ccHHH
Q 009782 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-----------------KDL---------------ISYNS 265 (526)
Q Consensus 218 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------~~~---------------~~~~~ 265 (526)
+...+.+---....||.-+ +..+.|+++.|++...++.+ +|+ ..+|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 9888755333455666444 45577899999988877643 122 12344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHHHHHH-HHHh-hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVAISSI-LANA-SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l-l~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (526)
-...+.+.|+++.|.+.+.+|--+ ....|++|...+ +... +++.....-+..++.... ....|+..++-.||+..-
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 444567889999999988888543 345677776543 3333 667777777777776644 567788899999999999
Q ss_pred hHHHHHHhccCCC
Q 009782 343 LDQACWLFDHMPQ 355 (526)
Q Consensus 343 ~~~A~~~~~~~~~ 355 (526)
++-|-.++.+-..
T Consensus 326 f~lAADvLAEn~~ 338 (459)
T KOG4340|consen 326 FDLAADVLAENAH 338 (459)
T ss_pred HhHHHHHHhhCcc
Confidence 9999998876553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.9e-08 Score=87.79 Aligned_cols=213 Identities=10% Similarity=-0.060 Sum_probs=119.8
Q ss_pred hCCChHHHHHHHHHHHHcC-CCCcHH--HHHH---HHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 272 HHGLLVEAFDIFRGMILNG-FDPDPV--AISS---ILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
..+..+.++.-+.+++... ..|+.. .+.. +....|+.+.|...++...+... .+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHH
Confidence 3466777888888777642 233321 1111 12223778888888887777643 356778888888888888888
Q ss_pred HHHHhccCCC--CC-hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 346 ACWLFDHMPQ--KD-VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 346 A~~~~~~~~~--~~-~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
|...|+...+ |+ ...|..+... .|+.++|.+.++...+ ..|+..........+...++.++|...+++...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 8888877754 32 2333332222 4777777777777766 344432212222223345667777777766543
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHH--HHHHHHhhcCCCC----C-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 420 YGISPRVEHYACMVNLYGRAGLIDE--AYSMIVEKMEFEA----S-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 420 ~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
...|+...+ .+.. ...|+... +.+.+.+.....| + ...|..+...+.+.|++++|+..|+++++.+|.+
T Consensus 194 -~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 233332222 2222 22344433 3333322222222 1 2467777777777777777777777777777643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-07 Score=85.91 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=94.7
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCHHH
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA----HLGSVKV 408 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~ 408 (526)
.+...|++++|++++.... +.......+.. .+|.+.|.+.++.|.+ +..|. +...+..++. ..+.+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~~--~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKGG--SLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTTT--CHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHccC--cccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHH
Confidence 3444555555555555431 12222222222 3455555555556554 33333 3333343332 3346889
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNV-CMGETAAQKLF 486 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 486 (526)
|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+++...|+ +.++..++......|+. +.+.+++.++.
T Consensus 186 A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999876 45678888888888999999999999999888888884 47777788888888877 66778888888
Q ss_pred ccCCCCcc
Q 009782 487 ELEPDNEH 494 (526)
Q Consensus 487 ~~~p~~~~ 494 (526)
...|.++.
T Consensus 264 ~~~p~h~~ 271 (290)
T PF04733_consen 264 QSNPNHPL 271 (290)
T ss_dssp HHTTTSHH
T ss_pred HhCCCChH
Confidence 88888654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-06 Score=80.97 Aligned_cols=234 Identities=11% Similarity=0.038 Sum_probs=142.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh----hhhHHHHHHHHHHHHhCCCC------chhHHhH
Q 009782 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA----SLLRIGAQVHGWVLRRGVEW------DLCIANS 332 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~a~~~~~~~~~~~~~~------~~~~~~~ 332 (526)
.-.+.++..+..+++.|.+-+....+.. ...+|...+.+. +....+...-....+.|-.. =...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456666777777888888777776643 455555544433 33333333222222222110 0111222
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHH
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 411 (526)
+..+|.+.++++.|...|++...+... .-++..+...++++.......- +.|... -...-...+.+.|++..|..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT--PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC--HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 445777788899999888875431100 1122223333444444444333 333332 12222555677889999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.+.+++++ .+-|...|....-+|.+.|.+..|++-....+..+|+. ..|..=..++....+++.|.+.|++.++.+|
T Consensus 380 ~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 380 HYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99988875 34478888888888899999998888887777777765 5565556666677788899999999999998
Q ss_pred CCcchHHHHHHHHHh
Q 009782 491 DNEHNFELLIKIYGN 505 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~ 505 (526)
.+......+.+++..
T Consensus 458 ~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVEA 472 (539)
T ss_pred hhHHHHHHHHHHHHH
Confidence 877766666665553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-06 Score=75.31 Aligned_cols=315 Identities=12% Similarity=0.104 Sum_probs=179.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCcchH-HHH
Q 009782 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLI---SGYAELGEYEDAIALYFQMEEEGVEPDQFTF-PRV 200 (526)
Q Consensus 125 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~l 200 (526)
++.-..-+.+.+...|++..|+..|....+.+| ..|.++. ..|...|+...|+.=+....+ .+||-..- ..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHh
Confidence 344445566667777888888888888888877 4455543 467777888888888877776 46764322 112
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHH
Q 009782 201 LKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAF 280 (526)
Q Consensus 201 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 280 (526)
...+.++|.++.|..-|+..++.. |+.. ....++.+.--.++-+.+ ...+..+...|+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAI 175 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHH
Confidence 234557777777777777777653 2211 111122211111111111 12233455567777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CC
Q 009782 281 DIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KD 357 (526)
Q Consensus 281 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 357 (526)
.....+++. . +.+...+..-..+|...|++..|+.=++...+ .+
T Consensus 176 ~~i~~llEi--~-------------------------------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 176 EMITHLLEI--Q-------------------------------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHHHhc--C-------------------------------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 777766653 1 23555566667788888888888776665543 22
Q ss_pred hhH-H--HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH----HHHH---HHH------hccCCHHHHHHHHHHHHHhcC
Q 009782 358 VVS-W--NSIIHAHSKDHEALIYFEQMERDGVLPDHLTF----VSLL---SAC------AHLGSVKVGERLFSVMVEKYG 421 (526)
Q Consensus 358 ~~~-~--~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll---~~~------~~~~~~~~a~~~~~~~~~~~~ 421 (526)
..+ | +.|+-..|+.+.++...++-.+ +.||.... -.|- ..+ ...+++.++.+..+...+.
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~-- 298 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-- 298 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 222 2 2233335666666666666665 66776422 1111 111 1223444444444444432
Q ss_pred CCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 422 ISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 422 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.|. ...+..+-.++...|++.+|++...+.+...|+ ..++..-..+|.-...++.|+.-|+.+.+.+++|..+
T Consensus 299 -ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 299 -EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred -CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 232 233444555566667777777777666677775 4666666666766677777777777777777776554
Q ss_pred HHH
Q 009782 496 FEL 498 (526)
Q Consensus 496 ~~~ 498 (526)
-..
T Consensus 378 reG 380 (504)
T KOG0624|consen 378 REG 380 (504)
T ss_pred HHH
Confidence 433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-07 Score=76.35 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=106.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 009782 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341 (526)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (526)
+...|.-.|...|+...|..-+++.++. .|+ +..++..+...|-+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs-------------------------------~~~a~~~~A~~Yq~~G 83 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPS-------------------------------YYLAHLVRAHYYQKLG 83 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc-------------------------------cHHHHHHHHHHHHHcC
Confidence 4556778899999999999999998875 333 3345566777888888
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 009782 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKY 420 (526)
Q Consensus 342 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 420 (526)
..+.|.+.|++..+ +.|+ ..+.|....-+|..|.+++|.+.|+.+....
T Consensus 84 e~~~A~e~YrkAls------------------------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 84 ENDLADESYRKALS------------------------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred ChhhHHHHHHHHHh------------------------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 88888888876553 1221 2233444444445555555555555554432
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 421 GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
...--..+|..++-+..+.|+++.|.+.|.+.+...|+. .+...+.....+.|++..|..++++...-.+.+.......
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~ 213 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLG 213 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHH
Confidence 222234444455544455555555555555555444433 4444444455555555555555555544444444444444
Q ss_pred HHHHHhcCChHHHHHH
Q 009782 500 IKIYGNAGRLDDVERV 515 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~ 515 (526)
+++-.+.|+-+.|.+.
T Consensus 214 iriak~~gd~~~a~~Y 229 (250)
T COG3063 214 IRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhccHHHHHHH
Confidence 4444455554444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-08 Score=89.96 Aligned_cols=193 Identities=11% Similarity=0.040 Sum_probs=130.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---c---CCchHHHHHHHHHHHCCCC--------CCHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---H---SKDHEALIYFEQMERDGVL--------PDHL 391 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~---~~~~~a~~~~~~m~~~~~~--------p~~~ 391 (526)
+...|.-|.......++-..|+..+++..+.|+.-..+|+.. | |.-.+|+..++.-+....+ ++..
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 344455555555555555555555555554333333333322 2 2224455555554432110 0000
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 470 (526)
.-.. ..+.....+....++|-++....+..+|+..+..|.-.|--.|.+++|+..|..++..+|+. .+||.|+..++
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 12233334556666776766654655788888899999999999999999998899999955 89999999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...+.++|+..|.+++++.|.-..+...|+-.|...|.|+||.+.|-...
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999988889999999999999999998776554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-08 Score=78.14 Aligned_cols=126 Identities=13% Similarity=-0.035 Sum_probs=94.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 374 ALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 374 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
-..++++..+ +.|+. +..+..++...|++++|...|+.+... -+.+...|..+..++.+.|++++|...|.+.+
T Consensus 12 ~~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 12 PEDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456666655 45553 445667777888888888888888742 23367777888888888888888888887788
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
...|+ ...+..+..++...|+.++|+..+++++++.|+++..+.....+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77774 47778888888888888888888888888888888877766666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-05 Score=75.34 Aligned_cols=402 Identities=14% Similarity=0.101 Sum_probs=232.8
Q ss_pred HHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHH
Q 009782 99 ETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYED 177 (526)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 177 (526)
.+....|+++.|...|...+... ++|...|.....+|+..|++++|++=-.+-.+..|+ +..|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 35567899999999999998876 558888999999999999999998877777666664 3679999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHH-HH------HHHHHHhC---CCCchhHHHHHHHHH--------
Q 009782 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE-KV------HLDAVRFG---FGFDGFVLNALVDMY-------- 239 (526)
Q Consensus 178 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~-~~------~~~~~~~g---~~~~~~~~~~li~~~-------- 239 (526)
|+.-|.+-++.. +-+...++-+..++. .+.+. +. +..+.... .......|..++..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999887742 233345566666551 11111 00 00000000 000001111222111
Q ss_pred --HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHH-hCCCh----HHHHHHHHHHHHc-CCCCcHHHHHHHHHHh---hhh
Q 009782 240 --AKCGDIVKARTVFDRIGNKDLISYNSMLTGYI-HHGLL----VEAFDIFRGMILN-GFDPDPVAISSILANA---SLL 308 (526)
Q Consensus 240 --~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~----~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~---~~~ 308 (526)
.....+..|.-.+...... .+...-.... ....+ ........++.+. ...--..-...+..+. .++
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred cccccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111111222111111100 0000000000 00000 0000000000000 0000000111222222 455
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCh---hHHHHHHHhc----------CCchHHH
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDV---VSWNSIIHAH----------SKDHEAL 375 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----------~~~~~a~ 375 (526)
..+.+-+....... .+..-++....+|...|.+..+....+...+... .-|+.+-.++ ++++.+.
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 55666666655554 4566677788889999998888877766544211 2233322222 3335566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 376 IYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 376 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
..|.+.......|+.. .+....+++....+... -+.|... -...=...+.+.|++..|+..|.+++.
T Consensus 319 ~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 6666655433333221 12222333333333222 3344321 122236677899999999999999999
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 455 FEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 455 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+|+. ..|..-.-+|.+.|++..|+.-.+..++++|+....|..=+.++....+|++|.+.|++.++..
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99955 8899999999999999999999999999999999999999999999999999999999987654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-05 Score=85.47 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-----HHHHHHHHhcCChHHHHHHHHhhcCCCCCH-----HH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-----ACMVNLYGRAGLIDEAYSMIVEKMEFEASP-----VV 461 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~ 461 (526)
.+..+.......|+.+.|.+.++.+............+ ...+..+...|+.+.|.+.+.+.....+.. ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 34445555666777777777776664321111110001 111233445677777777763333211111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELE------PDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..+..++...|+.++|...+++++... +....++..++.+|.+.|+.++|...+.+..+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345556677777777777777776531 11223455667777777777777777776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8e-08 Score=81.87 Aligned_cols=153 Identities=11% Similarity=0.112 Sum_probs=71.0
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009782 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 413 (526)
+..|...|+++.+....+.+..+. ..|+ ...+.+++...++...+.. +.|...|..+...|...|++++|...+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~~~~----~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~ 96 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-HQFA----SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAY 96 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-cccc----CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456777888777544332221110 0000 0122233444444433321 223345555555555555555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHH-HhcCC--hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 414 SVMVEKYGISPRVEHYACMVNLY-GRAGL--IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
++..+. .+.+...+..+..++ ...|+ .++|.+++.+.+...|+. ..+..+...+...|++++|+..++++++..
T Consensus 97 ~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 97 RQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555432 122444444444432 34444 355555555555555532 444555555555555555555555555555
Q ss_pred CCCcc
Q 009782 490 PDNEH 494 (526)
Q Consensus 490 p~~~~ 494 (526)
|++..
T Consensus 175 ~~~~~ 179 (198)
T PRK10370 175 SPRVN 179 (198)
T ss_pred CCCcc
Confidence 54443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=76.40 Aligned_cols=109 Identities=7% Similarity=-0.098 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
+.++++..+ +.|+ .+..+...+...|++++|...|.+.+...|+ ...|..+..++...|++++|...|++++++
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345666653 4555 3556788899999999999999888999995 488899999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+|+++.++..++.++...|++++|.+.+++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-05 Score=74.36 Aligned_cols=301 Identities=10% Similarity=-0.079 Sum_probs=154.6
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT---FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA-- 234 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-- 234 (526)
..|..+...+...|+.+.+...+....+.. +++... .......+...|++++|.+.+++..+.. +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 345555555555666666555555544321 112111 1111223445677777777777766653 333333331
Q ss_pred -HHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHH
Q 009782 235 -LVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRI 310 (526)
Q Consensus 235 -li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 310 (526)
........|..+.+.+.+......+. .....+...+...|++++|.+.+++..+.. |+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~---------------- 146 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD---------------- 146 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----------------
Confidence 11111223445555555544222222 223344556777788888888887777642 22
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 009782 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDH 390 (526)
Q Consensus 311 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~ 390 (526)
+...+..+..+|...|++++|...+++..+... ..|+.
T Consensus 147 ---------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~---------------------------~~~~~ 184 (355)
T cd05804 147 ---------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD---------------------------CSSML 184 (355)
T ss_pred ---------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC---------------------------CCcch
Confidence 233445667778888888888887776542110 01222
Q ss_pred --HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-H--HHHHHHHhcCChHHHHHH--HHhhc-CCCCC---H
Q 009782 391 --LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-A--CMVNLYGRAGLIDEAYSM--IVEKM-EFEAS---P 459 (526)
Q Consensus 391 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~~-~~~p~---~ 459 (526)
..|..+...+...|++++|..+++++.......+..... . .++.-+...|....+.++ ..... ...|. .
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~ 264 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLA 264 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccch
Confidence 234556667777788888888887765321111111111 1 222333334433222222 10111 10011 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccC-C---C-----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELE-P---D-----NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
........++...|+.+.|...++.+.... . . ..........++...|++++|.+++.+....
T Consensus 265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111245556677888888888887775522 1 1 2333445566777899999999988877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-07 Score=93.43 Aligned_cols=197 Identities=11% Similarity=0.141 Sum_probs=167.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--------CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--------KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFV 394 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~ 394 (526)
+...|-..|......++.++|.++++++.. .-...|.++++. ||.-+...++|++..+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 456788888899999999999999988764 122355555554 88778899999998873 32345789
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHh
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYL 471 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~ 471 (526)
.|...|.+.+..++|.++++.|.++++ -....|..++..+.+..+-+.|.+++.+++..-|.. ......+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999999766 677889999999999999999999999999888863 455666667789
Q ss_pred cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 472 HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
.|+.+.+..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999988864
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-05 Score=70.19 Aligned_cols=308 Identities=14% Similarity=0.058 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHH---HHH
Q 009782 92 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL---ISG 168 (526)
Q Consensus 92 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l---i~~ 168 (526)
.-.--+-..+...|.+..|+.-|....+.. +.+-.++-.....|...|+-..|+.-|.+..+..|+ .+.+- ...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD--F~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD--FMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc--HHHHHHHhchh
Confidence 333445555666677777777777666532 112222233345666777777777777777777663 22222 245
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCcch----------------HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQFT----------------FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t----------------~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
+.+.|.+++|..=|+...+.. |+..+ ....+..+...|+...|+.....+++.. +-|...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 677888888888888877653 32211 1122233445667777777776666653 4566667
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhH
Q 009782 233 NALVDMYAKCGDIVKARTVFDRI---GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLR 309 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 309 (526)
..-..+|...|+...|+.-++.. ...+..++..+-..+...|+.+.++...++-++. .||....-.... .+.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK---klk 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK---KLK 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH---HHH
Confidence 77777777777777776555433 3455566666666677777777777777666553 455433211111 111
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 009782 310 IGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD 389 (526)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~ 389 (526)
+....++. +....+.++|.++.+ -.+...+ ..|.
T Consensus 268 Kv~K~les----------------~e~~ie~~~~t~cle----------------------------~ge~vlk--~ep~ 301 (504)
T KOG0624|consen 268 KVVKSLES----------------AEQAIEEKHWTECLE----------------------------AGEKVLK--NEPE 301 (504)
T ss_pred HHHHHHHH----------------HHHHHhhhhHHHHHH----------------------------HHHHHHh--cCCc
Confidence 11111111 111223333333333 3333333 2333
Q ss_pred --HH---HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH
Q 009782 390 --HL---TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 390 --~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
.. .+..+-.++...+++.+|++...+.. .+.|+ +.++.--..+|.-...+++|+.-|+.+...+++.
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 22 34455666777889999999999988 46664 8888888899999999999999998888888765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-06 Score=84.39 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
.+++.++.+.|+.-.+. .+.-..+|-.+.-+..+.+++..|.+.|.......|+. ..|+.+-.+|.+.|+..+|...
T Consensus 498 ~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 45555555555554432 11134455555555555555555555555555555544 5555555555555555555555
Q ss_pred HHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
++++++-+-.+...|...+-+....|.+++|.+.+.++.+
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5555555544455555555555555555555555555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-07 Score=91.29 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=118.5
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHH
Q 009782 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWG 463 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~ 463 (526)
...+...+..|.......|..++|+.+++...+ +.|+ ......+...+.+.+++++|+..+.+.+...|+. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 555688899999999999999999999999985 5674 6667788899999999999999998899999976 6677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+..++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788889999999999999999998999999999999999999999999999998864
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00012 Score=73.50 Aligned_cols=373 Identities=10% Similarity=0.089 Sum_probs=217.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhh--hccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPT--NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 167 (526)
|+...+..++++...+-+.+-.++++++.- ..+..+....|.|+-...+. +.....+..+++..-+.+ .+..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-----~ia~ 1056 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-----DIAE 1056 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-----hHHH
Confidence 555566666666666666666666666542 11222333444444443333 344555566655544321 1233
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
....++-+++|..+|+..- .+......++. .-+.+|.|.+.-+.. -...+|+.+..+-.+.|.+.+
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHH
Confidence 4445566777777776643 23333344443 235566665554432 234567778888888888888
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCC
Q 009782 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 248 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~ 324 (526)
|.+-|-+. .|+..|..++....+.|.|++-.+++....+..-.|...+ .++-++ +++.+..++ -..
T Consensus 1123 AieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~f-------i~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEF-------IAG 1191 (1666)
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHH-------hcC
Confidence 88777554 3555788888888888888888888777666665665443 233333 222222221 234
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
||......+.+-|...|.++.|.-+|..+. .|.-|-.. +|.+..|.+.-++ .-+..||..+-.+|.
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-----N~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNVS-----NFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACV 1260 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHh
Confidence 566666667777777777777777776433 33333322 3444444443332 224568888888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGIS--PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a 478 (526)
..+.+..|. |. |+. ....-..-|+..|...|-+++.+.+++..+|..-.. ..|+.|.-.|++- +.++.
T Consensus 1261 d~~EFrlAQ-----iC---GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km 1331 (1666)
T KOG0985|consen 1261 DKEEFRLAQ-----IC---GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKM 1331 (1666)
T ss_pred chhhhhHHH-----hc---CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHH
Confidence 776655442 22 433 345566788899999999999999997778876543 6666666666654 34555
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
.+.++-.+..- ..--++++...+.-|.|..=++.+
T Consensus 1332 ~EHl~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1332 MEHLKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544311 122356777777777777666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-06 Score=79.34 Aligned_cols=215 Identities=14% Similarity=0.032 Sum_probs=117.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChH
Q 009782 268 TGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLD 344 (526)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (526)
.+-.....|.+|+.+++.++..... ...|..+-..+ |+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 3444455555555555555443211 11122222222 4444444444321 22456788999999999
Q ss_pred HHHHHhccCCCCChhHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 345 QACWLFDHMPQKDVVSWNSIIHA-----HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 345 ~A~~~~~~~~~~~~~~~~~li~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
+|.++-++...|....-..+-.+ +|++.+|.++|-.+. .|+ ..|..|-+.|..+...++.++-.-.
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 99999888776654443333333 677777777664332 233 2355677778777777766543211
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 420 YGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 420 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
.-..|...+..-|-..|+...|.+-|.++- -|.+-+..|..++-+++|-++.+ .-...|..-....
T Consensus 880 ----~l~dt~~~f~~e~e~~g~lkaae~~flea~-------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~f 945 (1636)
T KOG3616|consen 880 ----HLHDTHKHFAKELEAEGDLKAAEEHFLEAG-------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAF 945 (1636)
T ss_pred ----hhhHHHHHHHHHHHhccChhHHHHHHHhhh-------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHH
Confidence 123455566777778888888887774433 24555566666666666544433 2333333333444
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 009782 500 IKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~ 518 (526)
+++-+-.| +.|.+++.+
T Consensus 946 lwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 946 LWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHhhCc--HHHHHHHHh
Confidence 44433333 456666554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=57.74 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 224 GFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 224 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-06 Score=78.94 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=95.5
Q ss_pred cCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHL 218 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 218 (526)
..++.+|+.+++.+.+++....-|-.+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+++.|.++-.
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHH
Confidence 334444444444444443333334444555555555555555543321 13334445555555555554433
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHH
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAI 298 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 298 (526)
+. .|.+.....|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-+.|..+..+++..+--...+.-+...+
T Consensus 816 e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f 888 (1636)
T KOG3616|consen 816 EC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHF 888 (1636)
T ss_pred Hh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHH
Confidence 32 22233333444444444455555555555555554442 245555666666665555543222222333344
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccC
Q 009782 299 SSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHM 353 (526)
Q Consensus 299 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 353 (526)
..-+.+-|++..|..-|-+.. -|.+.+++|...+-|++|.++-+.-
T Consensus 889 ~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 889 AKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred HHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 444555577777766554432 2456677888888888888776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-07 Score=79.50 Aligned_cols=132 Identities=14% Similarity=0.009 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHhc--------CChHHHHHHHHhhcCCCCCHH-H
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYGRA--------GLIDEAYSMIVEKMEFEASPV-V 461 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~-~ 461 (526)
.+..+..++...|++++|...++.+.+.+.-.|.. ..+..+..++... |+.++|.+.+.+.+...|+.. .
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 45566667777777777777777777542211211 1344444555443 667777777766666666542 1
Q ss_pred H-----------------HHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 462 W-----------------GALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 462 ~-----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+ ..+...+.+.|++++|+..++++++..|++ +.++..++.+|.+.|++++|..+++.+..
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 134556788999999999999999987765 46799999999999999999999998876
Q ss_pred CC
Q 009782 522 RG 523 (526)
Q Consensus 522 ~g 523 (526)
+.
T Consensus 232 ~~ 233 (235)
T TIGR03302 232 NY 233 (235)
T ss_pred hC
Confidence 54
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00013 Score=71.74 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred ChhhHHHHHH--HHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC-----------C
Q 009782 90 QTETFASLLE--TCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR-----------T 156 (526)
Q Consensus 90 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------~ 156 (526)
|..|-..+++ .|.-.|+.+.|.+-.+.+. +..+|..+.++|.+.+++|-|.-.+-.|... +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555554 3445677887776655554 3457888888888888888887777666432 1
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 009782 157 AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236 (526)
Q Consensus 157 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 236 (526)
++ ..-.-..-.....|..++|+.+|.+-+. |..+=+.|-..|.+++|.++-+.--+..+ ..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1111122223456777777777777765 44455566677778777776543221111 12444445
Q ss_pred HHHHhcCCHHHHHHHHhhcCC
Q 009782 237 DMYAKCGDIVKARTVFDRIGN 257 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~ 257 (526)
..+-..+|.+.|++.|++...
T Consensus 866 ~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC
Confidence 555566777777777776543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00019 Score=67.42 Aligned_cols=147 Identities=10% Similarity=0.131 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 009782 372 HEALIYFEQMERD-GVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 372 ~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
+.....++++... ...|+ .+|..+++.-.+...++.|..+|.++.+. +..+ ++..+.+++..|| .++.+-|.++|
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 4455566665542 23333 46777788778888888899999998887 6666 6777788887765 56778888888
Q ss_pred HhhcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHcc--CCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 450 VEKMEFEASPVVW-GALLYACYLHGNVCMGETAAQKLFEL--EPD-NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 450 ~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+-.+...+|...| ...+.-+...|+-..+..+|++++.. .|+ ...+|..++.--+.-|+...+.++-+++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6677666766444 66677778888888888899988875 222 345688888888888988888888777643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=79.08 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=128.6
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHhccCC-CCCh--hHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 009782 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMP-QKDV--VSWNSIIHA-----HSKDHEALIYFEQMERDGVLPDHLTFVS 395 (526)
Q Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~li~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 395 (526)
.|.......+...+...++-+.+..-+++.. ++.. ..+..++.+ .|+.++|+++++.- -+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3444444445544444455566665554433 3211 112223333 37778888887642 35667778
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCC-CCCHHHHHHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEF-EASPVVWGALLYACY 470 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 470 (526)
.+..+.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.+|..+|.+.... .+++.+++.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 88999999999999999999973 44443 34445554432 34799999999554443 357788899999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL-DDVERVERMLVDR 522 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 522 (526)
..|++++|.+.++++++.+|.++.+...++.+....|+. +.+.+++.++.+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998 6677888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-07 Score=83.69 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=113.6
Q ss_pred HHHHHHH-HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 375 LIYFEQM-ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 375 ~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
.++|-++ ...+..+|......|.-.|.-.|++++|...|+.+.. +.| |...|+.|.-.++...+.++|++.|.++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3344443 3455457777777888888999999999999999984 566 7889999999999999999999999999
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----------CcchHHHHHHHHHhcCChHHHHHH
Q 009782 453 MEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD----------NEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 453 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
+.+.|.- .....|.-.|...|.+++|.+.|-.++.+.+. +..+|..|-.++...++.|-+.+.
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 9999986 77788999999999999999999999886543 124788888888888888855443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-05 Score=72.31 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=15.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVE 418 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~ 418 (526)
....++...|+.+.|...++.+..
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 455556667777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-06 Score=70.90 Aligned_cols=148 Identities=13% Similarity=0.112 Sum_probs=121.6
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 447 (526)
.|+.++...+....... ..-|......++....+.|++..|...++++.. .-++|...|+.+.-+|.+.|+++.|..
T Consensus 79 ~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 79 RGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred cccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHH
Confidence 34555555555443321 222344556688888999999999999999986 567789999999999999999999999
Q ss_pred HHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 448 MIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 448 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
-|.+.+...|+ +..++.+...+.-.|+.+.|..++.......+.+...-..|..+....|++++|..+...
T Consensus 156 ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 156 AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999998885 488899999999999999999999999998888888899999999999999999887543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00032 Score=69.16 Aligned_cols=205 Identities=12% Similarity=0.119 Sum_probs=119.7
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh---------hccCCChhHHHHHHHHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPT---------NLLRKNKGISSKLLRLY 136 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~ll~~~ 136 (526)
+...|+.+.|.+.++... +...|..+...|.+.++++-|.--+..|.. ....++ .+-.......
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445678888887777664 456677788888887777776655555432 111121 2222233334
Q ss_pred HhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHH
Q 009782 137 ATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV 216 (526)
Q Consensus 137 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 216 (526)
...|-+++|+.++.+... |..|=..|-..|.+++|+++-+.=-.-. =..||..-..-+...++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 566788888888877643 3444455666777777777654422211 123555555555666677777666
Q ss_pred HHHHH----------HhC---------CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------------------
Q 009782 217 HLDAV----------RFG---------FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-------------------- 257 (526)
Q Consensus 217 ~~~~~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------- 257 (526)
|++.. ... -..|...|.-....+-..|+++.|+.+|.....
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 65321 111 012334444444455566777777777765542
Q ss_pred ----CCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 258 ----KDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 258 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
.|......+.+.|-..|++.+|...|.+.+
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 244556667777777777777777776653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.8e-05 Score=74.84 Aligned_cols=395 Identities=12% Similarity=-0.006 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQM 185 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 185 (526)
...|...|-...+.. +.-...|..|...|....+...|.+.|+...+.++. ..++..+.+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555554444432 222457888999999888999999999999888664 478899999999999999999984332
Q ss_pred HHcC-CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHH
Q 009782 186 EEEG-VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYN 264 (526)
Q Consensus 186 ~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (526)
-+.. ...-...|..+.-.+...++...+..-|+...+.. +.|...|..+..+|.++|.+..|.++|++...-++..+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 2211 00011123333345678899999999999888765 568889999999999999999999999887764443322
Q ss_pred ---HHHHHHHhCCChHHHHHHHHHHHHcC------CCCcHHHHHHHHHHh---h-------hhHHHHHHHHHHHHhCCCC
Q 009782 265 ---SMLTGYIHHGLLVEAFDIFRGMILNG------FDPDPVAISSILANA---S-------LLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 265 ---~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~---~-------~~~~a~~~~~~~~~~~~~~ 325 (526)
......+..|.+.+|+..+......- ..--..++....... | -.+.+.+.+..........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 23334577899999999888776531 000111111111110 2 2333344444333333333
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCC--CCChhHHHHHHHh-----cCCchH----HHHHHHHHHHCCCCCCHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVSWNSIIHA-----HSKDHE----ALIYFEQMERDGVLPDHLTFV 394 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~-----~~~~~~----a~~~~~~m~~~~~~p~~~~~~ 394 (526)
+...|-.+.++| .+|-... .|+.....++..- .+...+ +.+.+-.-.. ...+..+|.
T Consensus 712 ~~~~Wi~asdac----------~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~Wy 779 (1238)
T KOG1127|consen 712 DRLQWIVASDAC----------YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWY 779 (1238)
T ss_pred hHHHHHHHhHHH----------HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHH
Confidence 333443333322 2333222 1222222222221 111112 1111111111 111233343
Q ss_pred HHHHHHhc----c----CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHH
Q 009782 395 SLLSACAH----L----GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGAL 465 (526)
Q Consensus 395 ~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l 465 (526)
.|...|.+ . .+...|...++..++. -.-+..+|+.|.-. ...|++.-|...|-+..-..|.. .+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 34333332 1 2334677777777753 23356666666554 66688888888887777777754 889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
...+.+..|++-|.+.+.+...+.|.|...|-....+....|+.-++..+|..
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888888888888988888887765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.7e-08 Score=55.32 Aligned_cols=34 Identities=47% Similarity=0.648 Sum_probs=31.3
Q ss_pred hCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 321 RGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
.|+.||..+|+++|.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778999999999999999999999999999984
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00057 Score=74.04 Aligned_cols=161 Identities=12% Similarity=0.012 Sum_probs=88.1
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCC------CChhH--HHH---HHHhcCCchHHHHHHHHHHHC----CCCCCHHHH-
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQ------KDVVS--WNS---IIHAHSKDHEALIYFEQMERD----GVLPDHLTF- 393 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~--~~~---li~~~~~~~~a~~~~~~m~~~----~~~p~~~~~- 393 (526)
+..+...+...|++++|...+++... +.... +.. +....|+.++|...+.+.... +........
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 33444555666777777666665432 11111 111 111156666676666665431 111000000
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHhhcC------CCCCH-HHH
Q 009782 394 -VSLLSACAHLGSVKVGERLFSVMVEKYGISPR---VEHYACMVNLYGRAGLIDEAYSMIVEKME------FEASP-VVW 462 (526)
Q Consensus 394 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~-~~~ 462 (526)
...+..+...|+.+.|.+.+...... ..... ...+..+..++...|+.++|...+.+.+. ..++. .+.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11223344578888888887665431 11111 11134567778888999998888855542 22222 455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..+..++...|+.++|...+.+++++...
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66667788899999999999998886543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-06 Score=82.00 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=155.0
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
.+|-...-..+...+...|-...|..+|++.. .|.-.|.+ .|+.++|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445555678889999999999999999765 33334444 3677889998888777 57888999999888
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 478 (526)
.....-+++|.++.+....+ .-..+.....+.++++++.+.++..+.++|- ..+|-.+..+..+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88777788888888876543 2233334445689999999999999999994 59999999999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
.+.|.....++|++..+|+.+..+|.+.|+..+|...+++..+.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=68.54 Aligned_cols=120 Identities=12% Similarity=0.090 Sum_probs=105.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHH-HhcCC--hHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYAC-YLHGN--VCM 477 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~-~~~g~--~~~ 477 (526)
..++.+++...++...+. -+.|...|..+...|...|++++|...|.+.+...|+. ..+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 467778888888888763 45589999999999999999999999999999999955 7778888764 67777 599
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|.++++++++.+|++..++..++.++.+.|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999997653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=69.72 Aligned_cols=114 Identities=10% Similarity=0.028 Sum_probs=78.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC
Q 009782 377 YFEQMERDGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 377 ~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (526)
.+++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|...+.+.+..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 34433 34556666677777888888887777653 2336667777777777778888888777666666
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 456 EAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 456 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.|+ ...+..+...+...|+++.|.+.+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 664 366666777777778888888888888877777655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-06 Score=70.96 Aligned_cols=136 Identities=18% Similarity=0.090 Sum_probs=114.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHH
Q 009782 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGA 464 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 464 (526)
..|+......+-.++...|+-+....+...... ..+.|......++....+.|++..|+..+.+.....| |...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345433335666777788888888888877653 3344666777799999999999999999988888777 5599999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+..+|.+.|+++.|...|.+++++.|.++..++.|+-.|.-.|+++.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998876544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=68.55 Aligned_cols=98 Identities=9% Similarity=-0.047 Sum_probs=85.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+....-.+...+...|++++|.++|.-.....|.. .-|-.|.-.+...|++++|+..|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555567777889999999999996666778855 77888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009782 504 GNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (526)
...|+.++|.+-|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999877643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=79.27 Aligned_cols=124 Identities=14% Similarity=0.086 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 469 (526)
.....|+..+...++++.|.++++++.+. .|+ ....+++.+...++-.+|++++.+.+...| +...+......+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556777777889999999999999875 355 445688888889999999999999998788 446777777788
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+.++++.|+++.+++.+..|++-.+|..|+.+|...|++++|+..+.-+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999888765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-05 Score=73.14 Aligned_cols=196 Identities=8% Similarity=0.058 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHhccCCC---CChhHHHH---HHHhcCCc--hHHHH
Q 009782 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG-KLDQACWLFDHMPQ---KDVVSWNS---IIHAHSKD--HEALI 376 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~---li~~~~~~--~~a~~ 376 (526)
+..++|..+.+.++..... +..+|+....++...| ++++++..++++.+ .+..+|+. ++...++. ++++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 5556666666665554321 3334444444445555 45666666655543 12223331 22223432 44555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc---CCh----HHHHHHH
Q 009782 377 YFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA---GLI----DEAYSMI 449 (526)
Q Consensus 377 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~ 449 (526)
+++++.+... -|..+|.....++...|+++++++.++++.+. . .-|...|+.....+.+. |.. +++++..
T Consensus 130 ~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 6656555321 13445665555566666666666666666653 1 22444444444443332 212 3444444
Q ss_pred HhhcCCCCCH-HHHHHHHHHHHhc----CChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 450 VEKMEFEASP-VVWGALLYACYLH----GNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 450 ~~~~~~~p~~-~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
.+++...|+. ..|+.+...+... ++..+|.+.+.++.+.+|.++.++..|+.+|+.
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5556666633 5555555555542 233446666666666666666666666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00022 Score=71.71 Aligned_cols=369 Identities=14% Similarity=0.022 Sum_probs=228.3
Q ss_pred ChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
+...|...|-+....+++ ...|..|...|...-+...|...|+...+.. .-|..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 366666666665555554 3679999999998889999999999988754 23555678888999999999999988333
Q ss_pred HHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcH
Q 009782 220 AVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDP 295 (526)
Q Consensus 220 ~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 295 (526)
.-+.. ...-..-|-...-.|.+.++...|..-|+...+ .|...|..+..+|...|++..|.++|.+...- +|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 22211 000111222244456778889999998887765 46678899999999999999999999987764 5554
Q ss_pred H--HHHHHHHHh--hhhHHHHHHHHHHHHhC------CCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHH-HHH
Q 009782 296 V--AISSILANA--SLLRIGAQVHGWVLRRG------VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW-NSI 364 (526)
Q Consensus 296 ~--~~~~ll~~~--~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l 364 (526)
. .|-..+..| |...++...+..+.... ...-..++-.+...+.-.|-..+|..++++-. ..+ .++
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l 705 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHH
Confidence 3 222222222 88888887777765431 11112222222233333333344444443322 111 112
Q ss_pred HHhcCCc-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH---H---HHHHHHHHHHHhcCCCCchhHHHH
Q 009782 365 IHAHSKD-------HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSV---K---VGERLFSVMVEKYGISPRVEHYAC 431 (526)
Q Consensus 365 i~~~~~~-------~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~p~~~~~~~ 431 (526)
+...... .+|..+|-... .. .|+......+..-....+.. + .+.+.+-.-. .+..++.+|..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyN 780 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYN 780 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHH
Confidence 2221111 34555555544 11 33333333333323333322 2 1222222211 22334566666
Q ss_pred HHHHHHh----c----CChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 432 MVNLYGR----A----GLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 432 l~~~~~~----~----g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
|+..|.+ . .+...|+..+.+.++..-+. .+|+.|... ...|++.-|...|-+....+|.....|..++..
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVL 859 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecccee
Confidence 6655544 1 23346788887888766655 777777666 667889999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 009782 503 YGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~~ 522 (526)
+....+++-|...|.+.+.-
T Consensus 860 ~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred EEecccHHHhhHHHHhhhhc
Confidence 99999999999999887643
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-05 Score=65.07 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=106.0
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--CCh----hHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQ--KDV----VSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 405 (526)
.++-+....|+.+.|...++.+.. |+. ..+..++.+.++.++|+++++.+.+.+ +-|..++-.=+...-..|.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 344445555666666666655442 221 234555666777777888887777754 2244455555555555676
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh---cCChHHHHHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYL---HGNVCMGETA 481 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~a~~~ 481 (526)
.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.+++.+=..|- +..+..+...+.- ..+.+.|.++
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6677777777776 46778888888888888888888888888777777774 4555556555433 3366778888
Q ss_pred HHHHHccCCCCcchH
Q 009782 482 AQKLFELEPDNEHNF 496 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~ 496 (526)
|.+++++.|.+...+
T Consensus 214 y~~alkl~~~~~ral 228 (289)
T KOG3060|consen 214 YERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHhChHhHHHH
Confidence 888888888554433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-05 Score=69.64 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=132.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHH----HHHHHhh-hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAIS----SILANAS-LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (526)
+-..+...+..++|+.+..++++. .|+..|.- .++...+ .++++...++.+.+...+ +..+|+....++.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 334455677889999999988874 56655432 2344455 578888888888877543 455677665556666
Q ss_pred CCh--HHHHHHhccCCC---CChhHHHH---HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCH---
Q 009782 341 GKL--DQACWLFDHMPQ---KDVVSWNS---IIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHL---GSV--- 406 (526)
Q Consensus 341 g~~--~~A~~~~~~~~~---~~~~~~~~---li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~--- 406 (526)
|+. +++..+++.+.+ .|..+|+. ++..+++.+++++.++++++.+.. |...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 653 677888877765 34455553 344478889999999999986544 445666665555444 222
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc----CChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh
Q 009782 407 -KVGERLFSVMVEKYGISPRVEHYACMVNLYGRA----GLIDEAYSMIVEKMEFEAS-PVVWGALLYACYL 471 (526)
Q Consensus 407 -~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 471 (526)
+...++...+... .+-|...|+.+...+... ++..+|.+.+.+.+...|. ...+..|+..|+.
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 4567777666652 344788888888888773 3456688888777776664 4667777777764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=64.63 Aligned_cols=127 Identities=18% Similarity=0.127 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGAL 465 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l 465 (526)
..|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|...|...+...|++ .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47888999999999987633221 23444456678889999999999997777666655 344556
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
...+...|++++|+..++.. .-.+-.+..+...+.+|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888999999999999763 233335667888999999999999999999864
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-05 Score=70.60 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=63.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGET 480 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 480 (526)
..|+.+.|+..++.+.. ..+-|+..+....+.+.+.++.++|.+.+++++...|+. .....+..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34556666666666554 233344444555555666666666666665555555653 444555555666666666666
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 009782 481 AAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
++++...-+|+|+..|..|.++|...|+..+|..-
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 66666666666666666666655555555554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7e-05 Score=77.76 Aligned_cols=206 Identities=14% Similarity=0.109 Sum_probs=165.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhh-ccC---CChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLR---KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSL 165 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 165 (526)
+...|-..|.-....++.+.|.++.++.+.. ++. --..+|.++++.-..-|.-+...++|++..+---.-..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4556777777788899999999999998763 111 123578888888888888899999999987653223568999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCC
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG-FDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~ 244 (526)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+.-.. --.....-.+..-.+.||
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999876 3456778999999999999999999999988875321 134455666777789999
Q ss_pred HHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHH
Q 009782 245 IVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPV 296 (526)
Q Consensus 245 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 296 (526)
.+++..+|+..... -...|+..|+.-.++|+.+.+..+|++....++.|-..
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 99999999988753 35789999999999999999999999999988876543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.7e-06 Score=64.96 Aligned_cols=109 Identities=13% Similarity=0.184 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 412 LFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 412 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
.++.+. ...| +......+...+...|++++|.+.+.+.....| +...+..+...+...|++++|...++++.+..
T Consensus 5 ~~~~~l---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLL---GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHH---cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555 3455 455667788889999999999999977777777 45888888999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0032 Score=63.16 Aligned_cols=434 Identities=12% Similarity=0.115 Sum_probs=248.5
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH--HccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETC--YQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
...+++++|+....++.+.. |+ ..|..++.++ .+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 35688999999999988764 22 3455566654 5789999999999888776634 88899999999999999999
Q ss_pred HHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC-C---------hHHHH
Q 009782 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG-L---------IRVGE 214 (526)
Q Consensus 145 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~---------~~~a~ 214 (526)
|..+|++.....|+-.-...+..+|++.+++.+-.+.--+|-+. ++-+...|=++++...+.- . +.-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999999999887555667778888888877655544444432 3334455555555544221 1 23455
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhh-c----CCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 215 KVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDR-I----GNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 215 ~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+..+.+.+.+ ..-+..-.-.-...+-..|++++|.+++.. . ...+...-+.-+..+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5666665543 111222222233445678999999999832 2 223334445567778888999999998888888
Q ss_pred cCCCCcH-HH-----HHHHHHHh-----------hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHH---hcCChHHHHH
Q 009782 289 NGFDPDP-VA-----ISSILANA-----------SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYS---KDGKLDQACW 348 (526)
Q Consensus 289 ~~~~p~~-~~-----~~~ll~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~ 348 (526)
.| +|. .+ +..+-... +..+...+......... ..+ .|-+-+.++. .-|+.+++..
T Consensus 255 k~--~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rg--p~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 255 KG--NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRG--PYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred hC--CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccC--cHHHHHHHHHHhcccCChHHHHH
Confidence 75 332 11 11121111 12222222222222221 111 2222233332 3366666543
Q ss_pred Hh-ccCCC-------------------------------CChh---------HHHHHHHh-cCCc-----hHHHHHHHHH
Q 009782 349 LF-DHMPQ-------------------------------KDVV---------SWNSIIHA-HSKD-----HEALIYFEQM 381 (526)
Q Consensus 349 ~~-~~~~~-------------------------------~~~~---------~~~~li~~-~~~~-----~~a~~~~~~m 381 (526)
.| ++.-. ++.. +....+.. +|.+ +....++.+.
T Consensus 330 ~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl 409 (932)
T KOG2053|consen 330 YYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKL 409 (932)
T ss_pred HHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 32 21111 1111 11111111 3433 3344444333
Q ss_pred H---HCC------CCCCHH---------HHHHHHHHHhccCCHHH---HHHHHHHHHHhcCCCC-chhHHHHHHHHHHhc
Q 009782 382 E---RDG------VLPDHL---------TFVSLLSACAHLGSVKV---GERLFSVMVEKYGISP-RVEHYACMVNLYGRA 439 (526)
Q Consensus 382 ~---~~~------~~p~~~---------~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 439 (526)
. ++| .-|+.. +.+.|++.+.+.++... |+-+++.-.. ..| |..+--.+++.|.-.
T Consensus 410 ~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 410 KLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHh
Confidence 2 233 223322 34577788888887664 3444444332 233 455556788999999
Q ss_pred CChHHHHHHHHhhcCCCC-CHHHHHHHH-HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHH
Q 009782 440 GLIDEAYSMIVEKMEFEA-SPVVWGALL-YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 440 g~~~~A~~~~~~~~~~~p-~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
|-+..|.++| +.+.++- ...|...++ ..+...|.+..+...+...++..-++..--..++..-.+.|.|.+..+
T Consensus 487 Ga~p~a~~~y-~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~e 562 (932)
T KOG2053|consen 487 GAFPDAYELY-KTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPE 562 (932)
T ss_pred cCChhHHHHH-HhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHH
Confidence 9999999999 7776543 224443333 345667788888888777777543332222233333345566655544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00023 Score=60.77 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=127.9
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCCCCCCHH
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDGVLPDHL 391 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~~~p~~~ 391 (526)
.+.+++.......+......-...|++.|++++|++.......-+....+.-|.. ..+.+-|...+++|.+- . +..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--d-ed~ 170 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI--D-EDA 170 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c-hHH
Confidence 4444444444444444444556789999999999999988554444444433333 45668899999999872 2 445
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHH
Q 009782 392 TFVSLLSACAH----LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALL 466 (526)
Q Consensus 392 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 466 (526)
|.+.|..++.+ .+.+..|.-+|++|.+ ..+|+..+.+-...++...|++++|..++++++...+ ++.++..++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 67767666653 4578999999999986 4789999999999999999999999999988887766 567887777
Q ss_pred HHHHhcCCh-HHHHHHHHHHHccCCCCcc
Q 009782 467 YACYLHGNV-CMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 467 ~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 494 (526)
..-...|.. +...+...++....|..+.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 777667765 4455677777777777554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-05 Score=65.03 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=126.3
Q ss_pred cCChHHHHHHhccCCC--------CChhH-HHH-HHHh--cCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCH
Q 009782 340 DGKLDQACWLFDHMPQ--------KDVVS-WNS-IIHA--HSKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSV 406 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~--------~~~~~-~~~-li~~--~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~ 406 (526)
..+.++..+++.++.. ++..+ |.- +|.+ +++.+.|..+++++..+ + |.+. .-..-.--+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4567778777776652 22211 221 2223 68888899999988775 3 4443 222222224456888
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 407 KVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKL 485 (526)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 485 (526)
++|+++++.+.+. -+.|..++-.=+-.....|+.-+|++-+.+-+..-| |...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998874 244666776666666677877788887766665555 6788999999999999999999999999
Q ss_pred HccCCCCcchHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 009782 486 FELEPDNEHNFELLIKIYGNAG---RLDDVERVERMLVDRG 523 (526)
Q Consensus 486 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g 523 (526)
+=++|-++..+..++..+.-.| +++-|.+++.+..+.+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999998888888888877666 4556788888777654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.5e-05 Score=68.54 Aligned_cols=179 Identities=14% Similarity=0.042 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCCh---hHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-c---cH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNK---GISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-F---PW 162 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~ 162 (526)
....+-.....+...|+++.|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+..|+. . ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455555566667777777777777776643 2222 345566677777777777777777776555432 1 23
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 009782 163 NSLISGYAEL--------GEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN 233 (526)
Q Consensus 163 ~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 233 (526)
..+..++... |++++|.+.|+.+... .|+.. .+..+..... .. .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 3444444433 5677777777777654 34332 2211111100 00 0000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGN--KD----LISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
.+...|.+.|++++|...+++... |+ ...+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678888888888888887754 22 256778888888899999998888887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=75.19 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHH
Q 009782 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIAL 181 (526)
Q Consensus 125 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~ 181 (526)
+...+..|+..+...+++++|.++.+......|+. ..|-.+...+.+.++..++..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh
Confidence 44566677777777777777777777665555543 3333333355555554444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.9e-06 Score=71.27 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=88.6
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCM 477 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 477 (526)
..+.+++.+|...|.++.+ +.| |...|..=..+|.+.|.++.|++-.+.++.++|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 5677899999999999884 555 67777777889999999999999888888888876 899999999999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (526)
|++.|+++++++|++......|-.+--+.+.-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999998876666666655544433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00016 Score=67.18 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=104.9
Q ss_pred cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEA 445 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 445 (526)
.++.++|+..++.+... .|+ ........+.+.+.++.++|.+.++.+.. ..|+ ....-.+.++|.+.|++.+|
T Consensus 319 ~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 319 AGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHH
Confidence 47788999999998874 454 45666677778999999999999999985 4665 56667888999999999999
Q ss_pred HHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 446 YSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 446 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.++.+.....| |+..|..|..+|...|+..++... ....|.-.|++++|...+....++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999988887788 559999999999999998777544 445666667777776666665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=62.49 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALL 466 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 466 (526)
++..+...+...|++++|.+.++.+.+.+.-.+ ....+..+..++.+.|++++|.+.+.+.+...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566667777788888888777765421111 1345556777777777888887777656655554 24566666
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHH
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
..+...|+.++|.+.++++++..|++..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777777777777777777777777665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=59.96 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
+..+...+...|++++|...+.+.+...|+. ..+..+...+...|++++|.+.+++..+..|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4566777788888899988887777777754 667777778888889999999999988888888878888889999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 009782 508 RLDDVERVERMLVDRG 523 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g 523 (526)
++++|...+++..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999998888876543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-06 Score=49.94 Aligned_cols=34 Identities=41% Similarity=0.780 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ 194 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 194 (526)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888888877763
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.7e-05 Score=71.32 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=73.8
Q ss_pred HHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh
Q 009782 131 KLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 210 (526)
Q Consensus 131 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 210 (526)
+|+..+...++++.|..+|+++...+| .....++..+...++..+|.+++++..+. .+-|......-...+...++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP--EVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 444445556667777777777766666 44555666666666666677776666643 222333444444556666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 211 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
+.|+++.+++.+.. +.+..+|..|..+|...|+++.|+-.++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777666666552 3334466666666666666666666666665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0087 Score=60.17 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCh---HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 461 VWGALLYACYLHGNV---CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+.+.|+..|.+.++. -+|+-+++..+...|.|...--.++++|+-.|-+..|.++++.|--+.|
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 446777888888875 5677888888889999999888899999999999999999988754443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.3e-05 Score=75.09 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=122.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHH
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLI 166 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li 166 (526)
..++..+..|..+..+.|.+++|..+++...+.. +.+......+...+.+.+++++|+..+++....+|+. ...+.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3468899999999999999999999999999875 5667788889999999999999999999999988865 5677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 009782 167 SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235 (526)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 235 (526)
.++.+.|++++|.++|++....+ +-+..++..+..++...|+.++|...|+...+.- .+....|+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 89999999999999999999832 3346788899999999999999999999988753 3444554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=62.27 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 009782 439 AGLIDEAYSMIVEKMEFEA---SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
.|+++.|+.++.+.+...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4666777777755555555 234444566777777777777777777 556666555566667778888888888877
Q ss_pred HHH
Q 009782 516 ERM 518 (526)
Q Consensus 516 ~~~ 518 (526)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=74.80 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=89.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN 474 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 474 (526)
-...+...|+++.|.+.|+++.+. -+.+...|..+..+|...|++++|+..+.+++...|+ ...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566779999999999999863 3336778888889999999999999999888888885 4788888889999999
Q ss_pred hHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
+++|+..+++++++.|+++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999888666665554443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.4e-05 Score=58.98 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELL 499 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 499 (526)
.++..++..+.+.|++++|.+.|.+.+...|+. ..+..+...+.+.|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888899999999999997777666653 466678888999999999999999999988775 4568889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+.++.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999877643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-06 Score=48.50 Aligned_cols=34 Identities=32% Similarity=0.809 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPD 294 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 294 (526)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=70.14 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=81.9
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (526)
..-+.+.+++.+|+..|.+++.+.|.. +.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445668899999999999999999955 7777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 009782 512 VERVERMLVDR 522 (526)
Q Consensus 512 A~~~~~~m~~~ 522 (526)
|.+.|++..+-
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999987654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.9e-05 Score=64.21 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
..+..+...+...|++++|...|.+.+...|+ ...+..+...+.+.|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555555666666666666555543332 13455555566666666666666666666666666666666666
Q ss_pred HHhcCC
Q 009782 503 YGNAGR 508 (526)
Q Consensus 503 ~~~~g~ 508 (526)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 655555
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-06 Score=47.83 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEP 192 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 192 (526)
.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0012 Score=56.48 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=109.6
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDE 444 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 444 (526)
+++++|++.++... +......=...+.+..+.+.|.+.++.|.+- .+..+.+.|..++.+ .+...+
T Consensus 122 ~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 122 GDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred CChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhh
Confidence 66788888877622 2223333344466778899999999999752 355677777777654 457889
Q ss_pred HHHHHHhhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHHhC
Q 009782 445 AYSMIVEKME-FEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDR 522 (526)
Q Consensus 445 A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~ 522 (526)
|.-+|++.-+ ..|++.+.+-...++...|++++|..+++.++..+++++.+...++.+-...|+-.++ .+.+.++...
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999955555 6778899999999999999999999999999999999999999999888888887766 4466665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.3e-06 Score=47.57 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDP 293 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 293 (526)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=55.76 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG-RLDDVERVERMLVDR 522 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 522 (526)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34667778888888888888888888888888888888888888888888 688888888887653
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=54.72 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=40.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+...+...|++++|+..++++++..|.++.++..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777777777777777776553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.01 Score=55.09 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=115.7
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCC--CCChhH----------HHHHHHh----cCCchHHHHHHHHHHHCCCCCCH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMP--QKDVVS----------WNSIIHA----HSKDHEALIYFEQMERDGVLPDH 390 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~----------~~~li~~----~~~~~~a~~~~~~m~~~~~~p~~ 390 (526)
..++..++....+.++...|...+.-+. +|+... ...++.. +.+..+-+.+|++....++ |.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--Dr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cH
Confidence 3456777888888888888887776544 343321 1111111 3334556777777766444 33
Q ss_pred H-HHHHHHHH---HhccCC-HHHHHHHHHHHHHhcCCCC-chhHHHHHH----HHHHhcC---ChHHH---HHHHHhhcC
Q 009782 391 L-TFVSLLSA---CAHLGS-VKVGERLFSVMVEKYGISP-RVEHYACMV----NLYGRAG---LIDEA---YSMIVEKME 454 (526)
Q Consensus 391 ~-~~~~ll~~---~~~~~~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~~g---~~~~A---~~~~~~~~~ 454 (526)
. ....|+.+ +-+.|. -++|.++++.+.+ +.| |...-+... .+|.++= .+..- ... .+..|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f-i~e~g 451 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF-ITEVG 451 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHhcC
Confidence 2 22233332 344555 8889999998874 455 333322222 2222211 11111 112 24446
Q ss_pred CCCC----HHHHHHHHHH--HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 455 FEAS----PVVWGALLYA--CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 455 ~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+.|- ...-|.|..+ +..+|++.++.-.-..+.++.| ++.+|..++-++....+|++|..++.++
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6662 2555666665 5679999999999999999999 6888999999999999999999998865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=63.84 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCCcchHHH
Q 009782 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG---NVCMGETAAQKLFELEPDNEHNFEL 498 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (526)
+-|...|..|...|.+.|+.+.|..-|.++....|+. ..+..+..++..+. ...++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4477888888888888888888888887777777744 66666666544322 3567778888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 499 LIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|+..+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888888888888888888887653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=9e-05 Score=69.75 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 447 (526)
+++++|+++|++.++. .| +...|..+..+|...|++++|...++.+.+. -+.+...|..+..+|...|++++|..
T Consensus 16 ~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 16 DDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555555555542 22 2334444444555555555555555555432 11134444455555555555555555
Q ss_pred HHHhhcCCCCCH
Q 009782 448 MIVEKMEFEASP 459 (526)
Q Consensus 448 ~~~~~~~~~p~~ 459 (526)
.|.+.+...|+.
T Consensus 92 ~~~~al~l~P~~ 103 (356)
T PLN03088 92 ALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHhCCCC
Confidence 554455555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.4e-05 Score=62.68 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
....|..++..+...|++++|...|.+.+...|+. .++..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777777888889999998887776655542 47788888888999999999999999998888888788888
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 009782 501 KIYG-------NAGRLDDVERVERM 518 (526)
Q Consensus 501 ~~~~-------~~g~~~~A~~~~~~ 518 (526)
.+|. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8887 77887766555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0028 Score=65.51 Aligned_cols=221 Identities=11% Similarity=0.093 Sum_probs=147.2
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 169 (526)
+...+..++..+...+++++|.++.+...+.. +-....|-.+...+...++.+.+..+ .++..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv---------------~~l~~~ 93 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL---------------NLIDSF 93 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh---------------hhhhhc
Confidence 56778889999989999999999999776653 33334444444466666665555444 233334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 249 (526)
....++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++.+.. +-|..+.|.+...|... ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 4444554444444555543 2344577788889999999999999999999887 66888899999999988 999999
Q ss_pred HHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh-CCCCchh
Q 009782 250 TVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR-GVEWDLC 328 (526)
Q Consensus 250 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~-~~~~~~~ 328 (526)
+++.+.. ..+...+++.++.++|.++... .|+...+- ..+.+.+... |...-..
T Consensus 170 ~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f------------~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 170 TYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFF------------LRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHH------------HHHHHHHHhhhccchhHH
Confidence 8877643 3477777888899999888875 34433321 1122222221 2223344
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCC
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
++-.+-..|...++|+++..+++.+.+
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 455566677777777777777776664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=59.86 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-c-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-R-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
..+..+...+...|++++|...|++..+. .-.+ + ...+..+...+.+.|++++|...+.+.+...|+. ..+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35677777888899999999999998864 2222 1 4678888899999999999999998888888854 66667777
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 468 ACYLHGN--------------VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 468 ~~~~~g~--------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.+...|+ +++|.+.++++++.+|++ |..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7777776 567777788888888886 5666666665554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=52.88 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=52.6
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
+...+.+.|++++|.+.|.+.+...|+. ..+..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667889999999999998888888855 8888888999999999999999999999999874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.015 Score=55.18 Aligned_cols=417 Identities=10% Similarity=0.105 Sum_probs=230.2
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 168 (526)
-|..+|..+|+-+... ..+++.+.++++... ++.....|..-+..-.+..+++..+++|.+......+..-|..-|+-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3888999999876555 889999999988764 35566788888888888999999999999877665555667766664
Q ss_pred HHh-cCChHH----HHHHHHHH-HHcCCCCCcc-hHHHHHH---HH------hccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 169 YAE-LGEYED----AIALYFQM-EEEGVEPDQF-TFPRVLK---AC------AGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 169 ~~~-~~~~~~----a~~~~~~m-~~~~~~p~~~-t~~~ll~---~~------~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
--+ .++... ....|+-. .+.|+.+-.. .|+.-+. .. ....+++...++++++....+.-=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 433 233322 22233332 3335333322 2333332 22 2233556677777777643322111122
Q ss_pred HH------HHHHH-------HhcCCHHHHHHHHhhcCC---------CCc------------ccHHHHHHHHHhCC----
Q 009782 233 NA------LVDMY-------AKCGDIVKARTVFDRIGN---------KDL------------ISYNSMLTGYIHHG---- 274 (526)
Q Consensus 233 ~~------li~~~-------~~~g~~~~A~~~~~~~~~---------~~~------------~~~~~li~~~~~~g---- 274 (526)
+- =|+.. -+...+..|.++++++.. +.+ ..|-.+|.---..+
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 11 11110 122334555555554431 000 11222222111110
Q ss_pred --Ch--HHHHHHHHH-HHHcCCCCcHHH-HHHHHHHh-------hh-------hHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 275 --LL--VEAFDIFRG-MILNGFDPDPVA-ISSILANA-------SL-------LRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 275 --~~--~~a~~~~~~-m~~~~~~p~~~~-~~~ll~~~-------~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
.. ....-.++. |.--+..|+... ++..+... |+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000011111 111123333211 11111111 11 344555555544443333444444433
Q ss_pred HHHHhcC---ChHHHHHHhccCCC----CChhHHHHHHHhcCC---chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 009782 335 VVYSKDG---KLDQACWLFDHMPQ----KDVVSWNSIIHAHSK---DHEALIYFEQMERDGVLP-DHLTFVSLLSACAHL 403 (526)
Q Consensus 335 ~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 403 (526)
+.--..- ..+.....++++.. .-..+|...+..-.+ ...|..+|.+..+.+..+ ....+++++..+|.
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 3221111 23444444444432 122344444444322 256889999999988887 66788889988775
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC--CCCH--HHHHHHHHHHHhcCChHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--EASP--VVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~--~~~~~l~~~~~~~g~~~~a~ 479 (526)
++.+.|.++|+.-.+++|-. ..--...++-+...++-..|..+|++.+.. .|+. ..|..++.--..-|+...+.
T Consensus 415 kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 88899999999988864433 333356778888899999999999666654 4443 89999999999999999999
Q ss_pred HHHHHHHccCCCCc----chHHHHHHHHHhcCChH
Q 009782 480 TAAQKLFELEPDNE----HNFELLIKIYGNAGRLD 510 (526)
Q Consensus 480 ~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~ 510 (526)
++-++.....|.+. ..-..++.-|.-.+.+.
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 99888877665221 12344555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.9e-05 Score=53.56 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG-NVCMGETAAQKLFELEP 490 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 490 (526)
+...|..+...+...|++++|+..|.+.+...|+. ..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888999999999999999999999888865 88888889999999 79999999999998887
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=53.19 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=79.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYL 471 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~ 471 (526)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+.+.+...|.. ..+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 455666778889999999999998763 23345677888899999999999999997777777755 578888889999
Q ss_pred cCChHHHHHHHHHHHccCCC
Q 009782 472 HGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~ 491 (526)
.|+.+.|...++++.+..|+
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999999887763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0019 Score=52.14 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HH
Q 009782 386 VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI-SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VV 461 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~ 461 (526)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++..|...+++.+...|+. .+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 577887778889999999999999999999887 54 4477888888999999999999999996666655533 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
...+.+.+...|+.++|+..|+.+..-.|+ +.........+.++|+.++|..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566778899999999999999999998887 455777788889999888876544443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00089 Score=54.15 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=81.6
Q ss_pred CCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHH
Q 009782 369 SKDHEALIYFEQMERDGVLP--DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDE 444 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 444 (526)
++...+...++.+......- .......+...+...|++++|...|+.+... .-.|+ ......|...+...|++++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44455666666666642111 1234455667788899999999999999886 42232 2344557888999999999
Q ss_pred HHHHHHhhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 445 AYSMIVEKMEFE-ASPVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 445 A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
|+..+ +..... ..+..+...+..+.+.|+.++|...|++++
T Consensus 104 Al~~L-~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATL-QQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHH-HhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999 544323 344667777888999999999999998763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00051 Score=67.59 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 009782 372 HEALIYFEQMERDGVLPDHL-TFVSLLSACAHL--------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI 442 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 442 (526)
.+|..+|++..+ ..|+.. .|..+..++... .+...+.+..+..........+...|..+.-.....|++
T Consensus 359 ~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 359 NKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 457777777776 556643 343333333211 123344444444333212334567788777777778999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
++|...+.+++..+|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 437 ~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999998888999999999999999999999999999998775
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.7e-05 Score=43.72 Aligned_cols=29 Identities=45% Similarity=0.960 Sum_probs=18.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEG 189 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 189 (526)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0035 Score=60.42 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhc
Q 009782 277 VEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFD 351 (526)
Q Consensus 277 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 351 (526)
-+..--++++++.|-.|+.......+.-.|++.+|.++|.+- |.. |..+..|.....++.|.+++.
T Consensus 617 L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhh
Confidence 344455677788888888877776666557777777776542 221 233444444444555544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00056 Score=57.03 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
...+..+...+...|++++|...|+.......-++ ...++..+...|...|++++|+..+.+.+...|+. ..+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34667777778888999999999999975411111 23578889999999999999999998888877754 56666666
Q ss_pred HHH-------hcCChH-------HHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 468 ACY-------LHGNVC-------MGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 468 ~~~-------~~g~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
.+. ..|+++ +|..++++++...|++ +......+...|++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 666 777776 4455555566667764 34445555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.9e-05 Score=53.38 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=28.2
Q ss_pred hcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 438 RAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..|++++|++.|.+.+...| +...+..+..+|.+.|++++|.+.++++....|+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 34555555555544444444 2244444555555555555555555555555555433
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00025 Score=52.15 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGV-EPDQFTFPRVLKACAGLG--------LIRVGEKVHLDAVRFGFGFDGFVLN 233 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~~ 233 (526)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++...++.. ++-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999877543 2446778899999999999999999
Q ss_pred HHHHHHHh
Q 009782 234 ALVDMYAK 241 (526)
Q Consensus 234 ~li~~~~~ 241 (526)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00065 Score=64.14 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=101.1
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcch
Q 009782 121 LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT----AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196 (526)
Q Consensus 121 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 196 (526)
+.+.+......+++.+....+++.+..++-+..... ..+.+..++++.|.+.|..+.++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345566667777888777788889999888876552 2236678999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 197 FPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 197 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
++.||..+...|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777777777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=51.25 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=30.1
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.|.+.++++.|.+.++++++++|+++..+...+.+|.+.|++++|.+.+++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-05 Score=42.90 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGF 291 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 291 (526)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0022 Score=58.48 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=59.6
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-----RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG 473 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 473 (526)
..+.|++..|.+.+.+.. ++.| +...|.....+..+.|+..+|+.-..+++.++|.. ..+..-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 356677888888887776 4444 35556666666777788888888776676666543 44444445566677
Q ss_pred ChHHHHHHHHHHHccCCC
Q 009782 474 NVCMGETAAQKLFELEPD 491 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~ 491 (526)
++++|.+.++++.+...+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 788888888887775544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00064 Score=54.33 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 431 CMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
....-+...|++++|..+|.-..-.+| +...|..|...+...+++++|+..|..+..+.++|+..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 344445678888888888833334455 4566677777788888889999888888888888888888889999999999
Q ss_pred HHHHHHHHHHHh
Q 009782 510 DDVERVERMLVD 521 (526)
Q Consensus 510 ~~A~~~~~~m~~ 521 (526)
++|.+.|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 998888877665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00052 Score=61.09 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALL 466 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 466 (526)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|.+.+...|+ +..+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555555666888888888888876521111 1346667778888888888888888666655554 24555556
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..+...|+.+.|...|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677788888888888888888887654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=51.42 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
.|+++.|..+++++.+.....++...+..+..+|.+.|++++|.+++.+ .+..|.. ...-.+..++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677888888888876522122444555577888888888888888844 5555544 4444556677788888888887
Q ss_pred HHHH
Q 009782 482 AQKL 485 (526)
Q Consensus 482 ~~~~ 485 (526)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=6e-05 Score=51.81 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=25.7
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
..|++++|++.++++++..|++..++..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555554443
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00091 Score=60.72 Aligned_cols=136 Identities=10% Similarity=0.119 Sum_probs=92.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 408 (526)
+|-.++....+.+..+.|..+|.+..+.. ..........+++..+ ..++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---------------------------~~~~~vy~~~A~~E~~-~~~d~~~ 54 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK---------------------------RCTYHVYVAYALMEYY-CNKDPKR 54 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------CS-THHHHHHHHHHHH-TCS-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHH-hCCCHHH
Confidence 45556666666666666666665443211 1233333444444433 3467777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWGALLYACYLHGNVCMGETAAQK 484 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 484 (526)
|..+|+...+. +..+...|...++.+...|+.+.|..+|++.+..-|... .|...+..-.+.|+.+...++.++
T Consensus 55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999885 555777788888999999999999999988887666554 888888888999999999999999
Q ss_pred HHccCCCCcc
Q 009782 485 LFELEPDNEH 494 (526)
Q Consensus 485 ~~~~~p~~~~ 494 (526)
+.+..|.+..
T Consensus 133 ~~~~~~~~~~ 142 (280)
T PF05843_consen 133 AEELFPEDNS 142 (280)
T ss_dssp HHHHTTTS-H
T ss_pred HHHHhhhhhH
Confidence 8888777443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0015 Score=50.08 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC---HHHHH-HHHHHHHh
Q 009782 398 SACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS---PVVWG-ALLYACYL 471 (526)
Q Consensus 398 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~-~l~~~~~~ 471 (526)
.++-..|+.++|..+|++..+. |.... ...+-.+...|...|++++|..++.+.+...|+ ..... .+.-++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444555555555555555554 44432 223344455555555555555555444444444 21111 11223444
Q ss_pred cCChHHHHHHHHH
Q 009782 472 HGNVCMGETAAQK 484 (526)
Q Consensus 472 ~g~~~~a~~~~~~ 484 (526)
.|+.++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 5555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.016 Score=52.96 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----chh-HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH------
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-----RVE-HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP------ 459 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------ 459 (526)
.+..+...+.+.|++++|.++|++.... .... +.. .|-..+-++...|+...|.+.+.+.....|.-
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 5566777788888888888888887654 2211 121 22333445666788888888886666555522
Q ss_pred HHHHHHHHHHH
Q 009782 460 VVWGALLYACY 470 (526)
Q Consensus 460 ~~~~~l~~~~~ 470 (526)
.....|+.++-
T Consensus 236 ~~~~~l~~A~~ 246 (282)
T PF14938_consen 236 KFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.082 Score=51.96 Aligned_cols=174 Identities=12% Similarity=0.101 Sum_probs=90.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccC--------CChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLR--------KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF 158 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 158 (526)
.|.+..|..+.......-.++.|...|-.... .|+. .+.....+=+.+| -|++++|++++-.+..++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 45666777776666555566666665543322 1111 1111112222222 4777888877777766554
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 009782 159 AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD----QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA 234 (526)
Q Consensus 159 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 234 (526)
.|..+.+.|++-...++++. -|-..| ...++.+...++....++.|.+.+..-... ..
T Consensus 766 ------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 34555666666555554432 111111 124566666666666666666665543211 23
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIF 283 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 283 (526)
.+.++.+..++++.+.+-..+++ |......+...+...|.-++|.+.+
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 55566666666665555555544 2334445566666666666666554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0036 Score=61.80 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 009782 385 GVLPDHLTFVSLLSACAHL-----GSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRA--------GLIDEAYSMIV 450 (526)
Q Consensus 385 ~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 450 (526)
+.+.|...|...+++.... ++...|..+|+++.+ ..|+ ...|..+..++... .++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3556778888888875432 237789999999986 4675 45555544444332 12334444443
Q ss_pred hhcCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 451 EKMEF--EA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 451 ~~~~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
+.... .| ++..+..+.......|++++|...++++++++|. ..+|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43332 33 4477777777777889999999999999999995 77899999999999999999999998876543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=59.92 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL-YGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYA 468 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 468 (526)
.+|..+++...+.+..+.|..+|+++.+. -..+...|...... |...++.+.|..+|+..++.-| +...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999853 22244455444444 3335677779999988887666 45788888899
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNE---HNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+...|+.+.|..+|++++...|.+. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999776644 5799999999999999999999988865
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0019 Score=51.42 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=78.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.-.+...+...|++++|..+|+.+.. +.| +..-|-.|.-++-..|++++|+..|..+....|+ +..+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 33445556788999999999999885 455 6677788999999999999999999888888885 488888999999
Q ss_pred hcCChHHHHHHHHHHHccC
Q 009782 471 LHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~ 489 (526)
..|+.+.|.+.|+.++..-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999888754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0018 Score=61.23 Aligned_cols=123 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhh--ccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCC--CCcc
Q 009782 85 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN--LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT--AFAF 160 (526)
Q Consensus 85 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 160 (526)
.+.+.+...+..++..+....+++.+..++...... ....-..+..++++.|.+.|..++++.+++.=..-| |+..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 455567888888999998888899999988877654 223334566799999999999999999998776665 4568
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 207 (526)
++|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887777888887777776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0017 Score=54.24 Aligned_cols=113 Identities=21% Similarity=0.183 Sum_probs=81.0
Q ss_pred CCCcchHHHHHHHHh-----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHH
Q 009782 191 EPDQFTFPRVLKACA-----GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNS 265 (526)
Q Consensus 191 ~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (526)
..|..+|..++..+. +.|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+ +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------A 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------H
Confidence 456778888888776 457888888999999999999999999999988754 3221 011111 1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+-.. .-.+-+-|++++++|...|+.||..|+..++..+|....+..-+.+|
T Consensus 111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 1111 12345668999999999999999999999999997765555444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0026 Score=46.91 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhCCCCchhHHh
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANA-----------SLLRIGAQVHGWVLRRGVEWDLCIAN 331 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 331 (526)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+. +++-....+++.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445566666889999999999999999 89999999988776 34556778888888889999999999
Q ss_pred HHHHHHHh
Q 009782 332 SLIVVYSK 339 (526)
Q Consensus 332 ~l~~~~~~ 339 (526)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=60.33 Aligned_cols=130 Identities=11% Similarity=-0.003 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH---HHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhc------CC-CCCH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVM---VEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKM------EF-EASP 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-~p~~ 459 (526)
..|..|...|.-.|+++.|....+.- .+.+|-.. ....+..+..++.-.|+++.|.+.|+..+ +. ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35677777777889999988766542 22334332 35667788899999999999999985544 21 2234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELE------PDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
....+|...|.-..+++.|+.++.+-+.+. -....++.+|+.+|...|..++|..+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888888889999999888766532 2234578999999999999999988766543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=41.73 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=30.7
Q ss_pred HHHHHccCCCCcchHHHHHHHHHhcCChHHHHH
Q 009782 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00062 Score=47.47 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
..|.+.+++++|.+++.+.+...|+. ..+......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 56778888888888887788888854 6677778888888888888888888888888776543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0084 Score=54.71 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC-------CCH
Q 009782 392 TFVSLLSACAHL-GSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE-------ASP 459 (526)
Q Consensus 392 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~ 459 (526)
.+..+...|... |+++.|.+.|+++.+-+..... ...+..+...+.+.|++++|.++|.+..... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566677777 8999999999988765332222 3456677888999999999999995443211 111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc-----hHHHHHHHHHh--cCChHHHHHHHHHH
Q 009782 460 -VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-----NFELLIKIYGN--AGRLDDVERVERML 519 (526)
Q Consensus 460 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m 519 (526)
..+-..+-.+...||...|.+.+++.....|.-.. ....|+.++-. ...+++|..-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 23333444667789999999999999998875322 34556677654 33455665555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0032 Score=56.08 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc---chHHHHH
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE---HNFELLI 500 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 500 (526)
.|...+..+.+.|++++|...|.+.+...|+. ..+-.+...|...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444566789999999997777777764 4677788888999999999999999998877754 4455667
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 009782 501 KIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+|...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.11 Score=47.50 Aligned_cols=269 Identities=17% Similarity=0.142 Sum_probs=164.0
Q ss_pred cCCHHHHHHHHhhcC---CCCcccHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCcHHHH--HH-HHHH--hhhhHHH
Q 009782 242 CGDIVKARTVFDRIG---NKDLISYNSMLTG--YIHHGLLVEAFDIFRGMILNGFDPDPVAI--SS-ILAN--ASLLRIG 311 (526)
Q Consensus 242 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~-ll~~--~~~~~~a 311 (526)
.||-..|.+.-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |..... .. .|.+ .|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555554443332 2333333333332 23356777777777777652 222111 11 1111 1666666
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-----CChh--HHHHHHHh------cCCchHHHHHH
Q 009782 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVV--SWNSIIHA------HSKDHEALIYF 378 (526)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~------~~~~~~a~~~~ 378 (526)
..+-+..-..... -.-...+.+...|..|+|+.|+++++.-.. +++. .-..|+.+ -.+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6665555444322 234567888999999999999999986543 4432 12233333 23333444444
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH-HHHHhhcCCC
Q 009782 379 EQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY-SMIVEKMEFE 456 (526)
Q Consensus 379 ~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 456 (526)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+..... +-..+.-..+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC
Confidence 44333 677764 4455667889999999999999999864 666665433 3345666543221 1111233557
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 009782 457 ASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA-GRLDDVERVERMLVDR 522 (526)
Q Consensus 457 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 522 (526)
|+. .....+..+....|++..|..-.+.+....|. ...|-.|.++-... |+-.++.+.+-+.++.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 765 77777888889999999999999999999998 45588888887654 9999999988777654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.13 Score=47.57 Aligned_cols=284 Identities=13% Similarity=-0.035 Sum_probs=130.7
Q ss_pred HHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHH
Q 009782 101 CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAI 179 (526)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~ 179 (526)
+.+..++..|+..+...++.. +.+..-|..-...+...|++++|.--.+.-...++. +..+.-.-.++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 344556777777777777765 444566666666666677777776655444333221 122222223333333333343
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHH-HHHHHhcCCHHHHHHHHhhcCC
Q 009782 180 ALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFDGFVLNAL-VDMYAKCGDIVKARTVFDRIGN 257 (526)
Q Consensus 180 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~ 257 (526)
+.++ |...| ....++..++....... +|.-..+..+ ..++.-.|+.++|.+.--.+.+
T Consensus 138 ~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 138 EKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 3333 11111 00111111111111111 1323333322 2344556666666665544444
Q ss_pred CCc-ccHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHH
Q 009782 258 KDL-ISYNSMLT--GYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLI 334 (526)
Q Consensus 258 ~~~-~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 334 (526)
-|. ..+..+++ ++.-.++.+.|...|.+.+.. .|+...-...-. ....++.+... .
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~-------~~k~le~~k~~------------g 256 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASM-------MPKKLEVKKER------------G 256 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhh-------hHHHHHHHHhh------------h
Confidence 322 22222232 333456677777777766553 354433222111 11111222222 2
Q ss_pred HHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 009782 335 VVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFS 414 (526)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 414 (526)
.-..+.|++..|.+.|.+....|+. ++.|+...|.....+..+.|+.++|+.--+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~-------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPS-------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCcc-------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 3456778888888888776642221 244455555555555556666666665555
Q ss_pred HHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 415 VMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 415 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+..+ +.|. +..|..-..++...++|++|++-+.+.+.
T Consensus 312 ~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 312 EALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5442 2221 22222223344445556666665555553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00097 Score=62.42 Aligned_cols=98 Identities=7% Similarity=0.006 Sum_probs=75.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
.+...+..+..+|...|++++|+..|.+++..+|+.. +|..+..+|...|+.++|+..+++++++.+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 3678889999999999999999999988999999763 4889999999999999999999999997422 13322
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhCCC
Q 009782 500 IK--IYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 500 ~~--~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.. .+....+.++..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 11 12233445577788888887775
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.13 Score=47.45 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACY 470 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 470 (526)
.+.+..+.-|...|+...|.++-++. .+ |+...|..-+.+|+..++|++-.++. .. +-.+.-|..++.+|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa-~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFA-KS---KKSPIGYEPFVEACL 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHH-hC---CCCCCChHHHHHHHH
Confidence 35666677778889988887775554 45 78899999999999999999988866 33 234577889999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+.|+..+|..+..+ ..+..-+..|.+.|+|.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988887 2246678888999999998776443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0078 Score=53.10 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHHhhcCCCCCH-HHHH
Q 009782 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG---LIDEAYSMIVEKMEFEASP-VVWG 463 (526)
Q Consensus 388 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~-~~~~ 463 (526)
-|...|..|..+|...|+.+.|...|....+. -.++...+..+..++.... ...++.+++.+.+..+|+. .+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 36679999999999999999999999999864 3446666777777665433 5678899999999999965 6677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (526)
-|...+...|++.+|...++.+++..|.+.. +..++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHHH
Confidence 7777899999999999999999999888665 444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.18 Score=47.14 Aligned_cols=364 Identities=14% Similarity=0.070 Sum_probs=174.2
Q ss_pred chHHHHHHHHHHHHHHhhC--CCCC---Ch--------hh-HHHHHHHHHccCChHHHHHHHHHHhhhcc----CCChhH
Q 009782 67 TKLQALDSIIQDLESSVQN--GITV---QT--------ET-FASLLETCYQLKAVEHGIKLHRLIPTNLL----RKNKGI 128 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~--~~~~---~~--------~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 128 (526)
-+.+.+++|++.+..+..+ +-.+ |. .. =+..++.+...|++.++..+++.+...-+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3778999999999998876 3222 11 11 23456677889999999999998876444 488999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccccC-CCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 129 SSKLLRLYATFGLIDEAHQVFDQMSNR-TAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 129 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
|+.++-.+++. .|-++.+. ..+. ..|.-++-.|.+.=. .++.-.=..+.|.......++....-
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 99988777653 23222111 1111 224444444443211 11110001122333333333332221
Q ss_pred --cCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhhcC--------CCCcccHHHHHHHHHhCCC
Q 009782 207 --LGLIRVGEKVHLDAVRFGFGFDGF-VLNALVDMYAKCGDIVKARTVFDRIG--------NKDLISYNSMLTGYIHHGL 275 (526)
Q Consensus 207 --~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~ 275 (526)
.....--.+++..-...-+.|+-. +...+..-+.. +.+++..+-+.+. +.=+.++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222233333333333444432 23333333333 3344433333222 2334578888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCcHH----------HHHHHHH----HhhhhHHHHHHHHHHHHhCCCCchhHHhHHH---HHHH
Q 009782 276 LVEAFDIFRGMILNGFDPDPV----------AISSILA----NASLLRIGAQVHGWVLRRGVEWDLCIANSLI---VVYS 338 (526)
Q Consensus 276 ~~~a~~~~~~m~~~~~~p~~~----------~~~~ll~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~ 338 (526)
...|.+.+.-+.-- .|+.. ++-.++. .+.+...-..+++.+...++....-+ .-++ .-+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv-h~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV-HYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHHHHH
Confidence 98888888776543 33332 1111111 11344455555655555554432211 1121 2223
Q ss_pred hcCC-hHHHHHHhccCCC---CChhHHHHHHHh----cCC------chHHHHHHHHHHHCCCCCCHH----HHHHHHHH-
Q 009782 339 KDGK-LDQACWLFDHMPQ---KDVVSWNSIIHA----HSK------DHEALIYFEQMERDGVLPDHL----TFVSLLSA- 399 (526)
Q Consensus 339 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~----~~~------~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~- 399 (526)
+.|. -++|.++++.+.+ -|...-|.+..- |.+ ...-..+-+-+.+.|+.|-.. .-|.|.+|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3333 5666666665543 233222222211 110 022223333333445544322 23333333
Q ss_pred -HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 400 -CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 400 -~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
+..+|++.++.-+-.-+. .+.|++.+|..++-++....++++|.+++ ..+
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l-~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYL-QKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHH-HhC
Confidence 234555555554433333 35566666666665556666666666666 444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00071 Score=41.47 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (526)
.++..+...|...|++++|++.++++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788889999999999999999999999999988877764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0005 Score=48.67 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFEL----EPD---NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777753 222 244678888888999999999888887654
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0058 Score=51.17 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCCcccHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh-------------------hhhHHHH
Q 009782 257 NKDLISYNSMLTGYIH-----HGLLVEAFDIFRGMILNGFDPDPVAISSILANA-------------------SLLRIGA 312 (526)
Q Consensus 257 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------------------~~~~~a~ 312 (526)
..|..+|..++..|.+ .|+.+-....++.|.+-|+.-|..+|+.+|..+ .+-+-+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555666666666654 366777777788888888888888888888765 3456777
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGK 342 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (526)
.++++|...|+.||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888887765544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.037 Score=44.97 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=80.7
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC---CcccHH
Q 009782 87 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA---FAFPWN 163 (526)
Q Consensus 87 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 163 (526)
.-|+...--.+..++.+.|+..+|...|++....-+-.|......+.++....+++..|...++.+-+-+| ++.+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555566677777777777777777777665666776666777777777777777777776654433 224455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 164 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
.+...+...|++.+|...|+..... -|+...-..-...+.++|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 5666677777777777777777663 344443333334445556555554433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.042 Score=48.64 Aligned_cols=150 Identities=9% Similarity=0.100 Sum_probs=89.3
Q ss_pred CCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH--hc---
Q 009782 369 SKDHEALIYFEQMERDGVLPDHL----TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYG--RA--- 439 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~--- 439 (526)
|++++|.+.|+++... .|+.. ..-.+..++.+.++++.|...+++..+.+.-.|+.. +...+.+++ ..
T Consensus 46 g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 46 GNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGLTNMALDDS 122 (243)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHHhhhhcchh
Confidence 4444455555555442 22221 123455666777777777777777776544444332 112222221 11
Q ss_pred ------------CC---hHHHHHHHHhhcCCCCCHHH------------------HHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 440 ------------GL---IDEAYSMIVEKMEFEASPVV------------------WGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 440 ------------g~---~~~A~~~~~~~~~~~p~~~~------------------~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
.+ ..+|.+.|.+.+..-|+... --.+..-|.+.|++..|..-++.++
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 11 23455555455554554311 0123355888999999999999999
Q ss_pred ccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 487 ELEPDNE---HNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 487 ~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..|+.+ .+...++.+|...|..++|.+....+..
T Consensus 203 ~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 203 RDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9887754 4577888999999999999998776643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.017 Score=44.37 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=44.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHh
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPD--QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG--FDGFVLNALVDMYAK 241 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~ 241 (526)
..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444555666666666666666554333 123444455555666666666666655543211 011111222234455
Q ss_pred cCCHHHHHHHHhhcC
Q 009782 242 CGDIVKARTVFDRIG 256 (526)
Q Consensus 242 ~g~~~~A~~~~~~~~ 256 (526)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666665554433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.031 Score=42.56 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
+....+..+.....+|+-+.-.+++..+.+.+..++.....++.+|.+.|+..++.+++.+.-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44555666778888999999999999988766667888999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.014 Score=53.63 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=95.9
Q ss_pred HHhccCCHHHHHHHHHHHHHhcC----CC---------CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYG----IS---------PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGA 464 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~----~~---------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 464 (526)
.+.+.|++..|..-|+++..-.. .+ .-..++..|.-+|.+.+++..|+....+.+...|+. ..+-.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 45666777777776666543211 11 123466778888999999999999998888888854 77777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHHhC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVDR 522 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~ 522 (526)
-..++...|+++.|+..|+++++++|.|..+-..|+.+--+..++.+. .++|..|...
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999999999999999988888888888777776665 7788888654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.086 Score=51.35 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=53.2
Q ss_pred CCCccccccCCCCchHHHHHHHHHHH---------HHHhhCCCCCChhhHHHHHHHHHccCChHHHH--HHHHHHhhhcc
Q 009782 54 PTPLLTNQKAFPKTKLQALDSIIQDL---------ESSVQNGITVQTETFASLLETCYQLKAVEHGI--KLHRLIPTNLL 122 (526)
Q Consensus 54 p~~~~~~~~~~~~~~~~~~~~a~~~~---------~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~ 122 (526)
|.+..+..-+..+...|.+++|.++- +.+... ..+.-.++..=++|.+.++..--. --++++.++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444455555566777777776431 111111 012334555556666666644332 23456667776
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHhccc
Q 009782 123 RKNKGISSKLLRLYATFGLIDEAHQVFDQMS 153 (526)
Q Consensus 123 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 153 (526)
.|+... +...++-.|++.+|-++|.+-.
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcC
Confidence 677643 3455667789999999887653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0055 Score=57.54 Aligned_cols=64 Identities=16% Similarity=0.028 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhhcCC
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV----EHYACMVNLYGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (526)
+...++.+..+|.+.|++++|...|++..+ +.|+. ..|..+..+|...|+.++|++.+.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999885 56763 35899999999999999999999888875
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0037 Score=50.65 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++|+++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455667778889999999999999999999999999999999999999999999998874
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.32 Score=45.53 Aligned_cols=130 Identities=14% Similarity=0.203 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHH-HHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYG-ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW-GALLY 467 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~ 467 (526)
...|...+.+..+...++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-.+...||...| .-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677777777888888999999998877 6 6678888888888665 577888899997777777877555 55666
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDN--EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+..-++-+.|..+|+...+.-.++ ..+|..++.--..-|+...|..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778888888988888766532222 34588888888888888777766666543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.21 Score=43.25 Aligned_cols=127 Identities=10% Similarity=0.074 Sum_probs=91.4
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc----CCCCchhHHHHHHHHHHhcCCh
Q 009782 367 AHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY----GISPRVEHYACMVNLYGRAGLI 442 (526)
Q Consensus 367 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~ 442 (526)
+++.+.-.+..+++.++...+-++.....|.+.-.+.||.+.|..+|+...+.. ++.-+..........|.-.+++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 355666677888888887666677888889999999999999999999766541 2233333334444556677889
Q ss_pred HHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 443 DEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
..|...+.+.+..+|.. ...|.-.-...-.|+..+|++.++.+++..|...
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99998886666666643 4444444455567899999999999999998843
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.48 Score=47.36 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=85.4
Q ss_pred hCCCCCChhhHHH-----HHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC---ChhHHHHHHhccccC
Q 009782 84 QNGITVQTETFAS-----LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG---LIDEAHQVFDQMSNR 155 (526)
Q Consensus 84 ~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~ 155 (526)
.-|++.+..-|.. ++..+...+.+..|.++-..+...-... ..++.....-+.+.. +.+.+..+=+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4477777666654 5666777888999998887775432222 567777777777653 233334444444443
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 156 TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG----VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 156 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
-....+|..+.......|+.+-|..+++.=...+ +-.+..-+...+.-+...|+.+....++-.+..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2233788888888888999999988876432221 111233355556666677777777776666554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0082 Score=54.87 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHh---cCC-CCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-------CCCCHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEK---YGI-SPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-------FEASPV 460 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~ 460 (526)
.+..+..++.-.|+++.|.+.++..... .|- .....+..+|...|.-...+++|+.++.+-+. ......
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5566667777777777777777654321 011 12345566777777777778888877744331 112335
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.+-+|..++...|..+.|+.+.+..++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666777888888888888777776655
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.28 Score=43.47 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=32.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCcc----cHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGN--KDLI----SYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
....+...|++++|.+.|+.+.. |+.. ..-.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444566777777777766654 2221 1133455666677777777777766664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.17 Score=43.74 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=103.1
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH-----
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL----- 235 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l----- 235 (526)
+-+.++..+.-.|.+.-..+++.+..+...+.+......+++...+.||.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 356677777778889889999999988766667777888888888999999999999987765434444444433
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 009782 236 VDMYAKCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 301 (526)
...|.-.+++..|...|+++... |+..-|.-.-+..-.|+..+|++.++.|+.. .|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34566778889999999888764 4455666666677788999999999999875 4555444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0025 Score=45.07 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcC----C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKME----F---EAS-PVVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
.+|+.+...|...|++++|++.|.+.+. . .|+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566666777777777777777655441 1 122 256677777777777777777777776653
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.051 Score=46.77 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=75.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHH-
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACY- 470 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~- 470 (526)
...+...|++.+|.+.|+.+...+...| -....-.++.++.+.|++++|...+.+-+...|+. ..+-.++.++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566888888888888877643333 23444566777788888888888775555444433 12222222211
Q ss_pred ----------hcCChHHHHHHHHHHHccCCCCcchH-----------------HHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 471 ----------LHGNVCMGETAAQKLFELEPDNEHNF-----------------ELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 471 ----------~~g~~~~a~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..+....|...++.+++..|+++.+- ..+++.|.+.|.+..|..-++.+.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 12234577888888888888876542 23578899999999999888887653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.034 Score=52.50 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhcc---------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 009782 372 HEALIYFEQMER-DGVLPDHL-TFVSLLSACAHL---------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440 (526)
Q Consensus 372 ~~a~~~~~~m~~-~~~~p~~~-~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 440 (526)
+.|+.+|.+... +.+.|+.. .|..+..++... .+..+|.+.-+...+. -+-|......+..++.-.+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhc
Confidence 568888998872 33677654 566666555432 2345666666666652 2337788888888888888
Q ss_pred ChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch--HHHHHHHHHhcCChHHHHHHHH
Q 009782 441 LIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN--FELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
+++.|..+|+++...+|+. .+|......+.-.|+.++|.+.+++++++.|....+ ....+..|+. ...++|.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence 8999999999999999976 777777777888999999999999999999985443 3334445655 45677777765
Q ss_pred H
Q 009782 518 M 518 (526)
Q Consensus 518 ~ 518 (526)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 4
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.82 Score=46.81 Aligned_cols=265 Identities=12% Similarity=0.046 Sum_probs=142.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHH
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQ 313 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~ 313 (526)
..+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..|-.. .+.+..
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~--------------p~~cd~ 168 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL--------------PNACDK 168 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--------------ChHHHH
Confidence 3444555667777777633222 2344445566667777777777766666665544221 122333
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH-
Q 009782 314 VHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT- 392 (526)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~- 392 (526)
+++...+.|.-.+..++.- +......|+...|..+...+..........++....+...+..++.. +.|+...
T Consensus 169 l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~ 242 (644)
T PRK11619 169 LFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTR 242 (644)
T ss_pred HHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhH
Confidence 4444444444333333332 44555667777777777666322222334444444555444443332 2223211
Q ss_pred --HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009782 393 --FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV--EHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468 (526)
Q Consensus 393 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 468 (526)
....+.-+ ...+.+.|...+.......++.+.. ..+..+.......+...+|...+........+......-+..
T Consensus 243 ~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~ 321 (644)
T PRK11619 243 QMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRM 321 (644)
T ss_pred HHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHH
Confidence 11222222 2346688888888775543444432 233444444444433566777773333333344455555556
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
....++++.+...+..+-........-..=+++++...|+.++|...|+++.
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5678888877777776543222334446677888777888888888888764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.23 Score=46.29 Aligned_cols=158 Identities=18% Similarity=0.103 Sum_probs=98.7
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCC-Ch--h-------HHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQK-DV--V-------SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~-------~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 398 (526)
.++-.|....+++...++++.+... +. . .|..-+.- -|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888887753 11 0 12222222 3666888888888766667778888887777
Q ss_pred HHhc---------cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH----HHH---Hhhc------CCC
Q 009782 399 ACAH---------LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY----SMI---VEKM------EFE 456 (526)
Q Consensus 399 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~----~~~---~~~~------~~~ 456 (526)
.|-. ....++|...|.+.. .+.||..+=-.++..+...|...+.. ++- ...+ +..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6632 224677777777765 34565444333444444444322221 111 1111 223
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 457 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
.+-..+.+++.++.-.|+.+.|.+.+++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344677888899999999999999999999988773
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.027 Score=50.25 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=111.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH----HHHHHHHH
Q 009782 362 NSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY----ACMVNLYG 437 (526)
Q Consensus 362 ~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~ 437 (526)
.+++-+-|+..+|-..++++.+. .+-|...+...=++|...|+.+.-...++++... -.||...| ..+.-++.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHH
Confidence 34555678888888888888774 4556677777888888888888888888887652 35555433 34445567
Q ss_pred hcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCChHHH
Q 009782 438 RAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 512 (526)
.+|-+++|.+.-.+++.++| |...-.++...+.-.|+..++.+++++--..-.. -...|-...-.+...+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 88999999998888888888 4477788888888888898888887764332111 123466666777778899999
Q ss_pred HHHHHHH
Q 009782 513 ERVERML 519 (526)
Q Consensus 513 ~~~~~~m 519 (526)
.++|++=
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 9988764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.071 Score=41.84 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=53.3
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--HHHHHHHHHH--HhcCC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVWGALLYAC--YLHGN 474 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~--~~~g~ 474 (526)
..+.|++++|.+.|+.+..++-..| ....--.|+.+|.+.|++++|...+.+-+...|+. .-|-..+.++ .....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 4455777777777777766544333 23444556677777777777777775555555533 2222222222 22221
Q ss_pred ---------------hHHHHHHHHHHHccCCCCcc
Q 009782 475 ---------------VCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 475 ---------------~~~a~~~~~~~~~~~p~~~~ 494 (526)
...|...|+++++..|++..
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 45666666666666666543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.021 Score=43.36 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcC
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-----VVWGALLYACYLHG 473 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g 473 (526)
+....|+.+.|++.|.+.... .+.....||.-.+++.-.|+.++|++-+.+++....+. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345556666666666666531 23355666666666666666666666665555332211 22333333455666
Q ss_pred ChHHHHHHHHHHHccCCC
Q 009782 474 NVCMGETAAQKLFELEPD 491 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~ 491 (526)
+.+.|..-|+.+-++..+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 666666666666555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0098 Score=54.59 Aligned_cols=91 Identities=13% Similarity=0.029 Sum_probs=75.5
Q ss_pred HHHHHhcCChHHHHHHHHhhcC-------CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 433 VNLYGRAGLIDEAYSMIVEKME-------FEA---------SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~-------~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
.+.|.+.|++..|...|.+++. ..+ -..++..+.-.+.+.+++..|++...++++++|+|..+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 4567788888888888744441 111 224567788889999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..-+.+|...|+++.|+..|+++.+..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999997643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.16 Score=48.20 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=92.6
Q ss_pred ChHHHHHHhccCC---CCC---hhHHHHHHHh------cCCc------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 009782 342 KLDQACWLFDHMP---QKD---VVSWNSIIHA------HSKD------HEALIYFEQMERDGVLPDHLTFVSLLSACAHL 403 (526)
Q Consensus 342 ~~~~A~~~~~~~~---~~~---~~~~~~li~~------~~~~------~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 403 (526)
..+.|..+|.+.. +-| ...|..+-.+ +|.. .+|.++-+...+.+ .-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898877 433 2333333222 2222 34667777777643 23566777777777777
Q ss_pred CCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~ 479 (526)
++.+.|...|+++. .+.|| ...|........-+|+.++|.+.+.+++..+|.. ......+..|+. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 88999999999997 46775 5566666666777899999999998889999965 333444445554 3467777
Q ss_pred HHHHHHH
Q 009782 480 TAAQKLF 486 (526)
Q Consensus 480 ~~~~~~~ 486 (526)
++|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7766533
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.069 Score=41.91 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=65.1
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch-HHHHHHH--HH
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEA----SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN-FELLIKI--YG 504 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~--~~ 504 (526)
-.....+.|++++|.+.|++....-| ....-..++.+|.+.|++++|...+++.+++.|.++.+ |.....+ +.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34555688999999999944444444 23666778999999999999999999999999987653 3333444 44
Q ss_pred hcCC---------------hHHHHHHHHHHHhC
Q 009782 505 NAGR---------------LDDVERVERMLVDR 522 (526)
Q Consensus 505 ~~g~---------------~~~A~~~~~~m~~~ 522 (526)
+... ..+|..-|++++++
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 4443 56677777776643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1 Score=44.78 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=40.6
Q ss_pred cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC---cccHHHHHHHHHhcCChHHHHH
Q 009782 104 LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF---AFPWNSLISGYAELGEYEDAIA 180 (526)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~ 180 (526)
-|++++|.++|-++.++. .-+..+.+.|++-...++++.-.....+ ..+|+.+...+.....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788887776655432 2355556667777666666553322211 1446666655555555555555
Q ss_pred HHHH
Q 009782 181 LYFQ 184 (526)
Q Consensus 181 ~~~~ 184 (526)
.|..
T Consensus 818 yY~~ 821 (1189)
T KOG2041|consen 818 YYSY 821 (1189)
T ss_pred HHHh
Confidence 5543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.71 Score=42.57 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=153.2
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCchhH--HHHH
Q 009782 162 WNSLISGYAE--LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC--AGLGLIRVGEKVHLDAVRFGFGFDGFV--LNAL 235 (526)
Q Consensus 162 ~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l 235 (526)
|..|-.+++- .|+-..|.++-.+-.+. +.-|......++.+- .-.|+.+.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555555544 35555555555443321 233444444444433 2457777777777777642 22221 1222
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCcHHH--HHHHHHHh----
Q 009782 236 VDMYAKCGDIVKARTVFDRIGN--K-DLISYNSMLTGYIHHGLLVEAFDIFRGMILN-GFDPDPVA--ISSILANA---- 305 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~--~~~ll~~~---- 305 (526)
.-.--+.|+.+.|..+-++.-. | -...+...+...+..|+|+.|+++++.-... -+.++..- -..++.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 2233456777777776665543 2 2245677778888888888888888766554 23444432 22333322
Q ss_pred --hhhHHHHHHHHHHHHhCCCCchhHH-hHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhcCCchHHHHHHHH
Q 009782 306 --SLLRIGAQVHGWVLRRGVEWDLCIA-NSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKDHEALIYFEQ 380 (526)
Q Consensus 306 --~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~a~~~~~~ 380 (526)
.+...+...-.+..+ +.|+..-- -.-..++.+.|+..++-.+++.+.+ |....+...+.+-+ .+-++.-++.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~-gdta~dRlkR 317 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARS-GDTALDRLKR 317 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcC-CCcHHHHHHH
Confidence 233334333333332 33433222 2235778888999988888888775 44444444444311 1222332322
Q ss_pred HHH-CCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCChHHHHHHHHhhcC
Q 009782 381 MER-DGVLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-AGLIDEAYSMIVEKME 454 (526)
Q Consensus 381 m~~-~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 454 (526)
... ..++||. .+...+.++....|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+.+.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222 1245544 356666677777777777776655554 356777777777665543 4777777777766663
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.031 Score=48.77 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGAL 465 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l 465 (526)
..|+..+..+ +.|++..|...|....+.|.-.+ ....+-.|.+++...|++++|..+|....+..|+ +..+--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3677777654 55779999999999988532211 3455667899999999999999999665544442 3677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
.....+.|+.++|...|+++.+-.|+.+.+-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 8888899999999999999999999876643
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.051 Score=42.21 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=74.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 405 (526)
|..++.+++.++++.|+.+....+++..-..++.. ...... --......|+..+..+++.+|+..|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~------~~~~spl~Pt~~lL~AIv~sf~~n~~ 67 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD------YPPSSPLYPTSRLLIAIVHSFGYNGD 67 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc------cCCCCCCCCCHHHHHHHHHHHHhccc
Confidence 34577889999999999999998887654321100 000000 01134578999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYG 437 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 437 (526)
+..|.++++...+.|+++-+..+|..|++-..
T Consensus 68 i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 68 IFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999998889999998887543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.085 Score=46.14 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=49.5
Q ss_pred hcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChH
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~ 510 (526)
+.|++.+|...|.+-+..-|+. ..+--|+.++...|++++|...|..+.+-.|++ +.++.-|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 4555666666665544444432 334445666666666666666666666654443 334555666666666666
Q ss_pred HHHHHHHHHHh
Q 009782 511 DVERVERMLVD 521 (526)
Q Consensus 511 ~A~~~~~~m~~ 521 (526)
+|...|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.99 Score=42.47 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCChHHHHHHH
Q 009782 372 HEALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 372 ~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~ 449 (526)
+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... -||...| ...+..+.+.++-+.|..+|
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 44666666666666 55667777777776654 6777778887776653 2343333 45566667777777788777
Q ss_pred HhhcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 450 VEKME-FEAS--PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 450 ~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
+..+. +..+ ...|..++.--..-|+...+..+-+++.++.|.
T Consensus 490 etsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 490 ETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 54442 1122 367777777777777777777776776666654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.031 Score=45.99 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=68.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACY 470 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 470 (526)
..-+.+.|++++|..-|..+.+. +++. ...|..-.-++.+.+.++.|++-..+++.+.|.. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34456678888888888887763 4443 2234444456677788888888777777777754 44444455677
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
+..++++|+.-|+++++..|....+-...++.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 77788888888888888888765544444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.14 Score=44.15 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHH-----------hcCChHHHHHHHHhhcCCCCCH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYG-----------RAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
....++.++.+.|+++.|...++...+.+.-.|.. ..+-.++.++. ..+...+|...|.+.+..-|+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 45566777788888888888888887765444432 11111122211 1223446666665555444543
Q ss_pred HH------------------HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChHHHHH
Q 009782 460 VV------------------WGALLYACYLHGNVCMGETAAQKLFELEPDNEH---NFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 460 ~~------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 514 (526)
.- --.+...|.+.|.+..|...++.+++..|+... +...++.+|.+.|..+.|..
T Consensus 124 ~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 124 EYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 10 012345688999999999999999999998654 46778999999999986543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.47 Score=43.17 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=55.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccC
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP--DHLTFVSLLSACAHLG 404 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~ 404 (526)
..++-.|...|.+..++++|.-+..+.. ++.+...-.++.. -....-.+.-++...|
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~---------------------~lv~s~~l~d~~~kyr~~~lyhmaValR~~G 220 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAA---------------------ELVNSYGLKDWSLKYRAMSLYHMAVALRLLG 220 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHH---------------------HHHHhcCcCchhHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888888888766554322 1111110000000 0011122333455556
Q ss_pred CHHHHHHHHHHHHHhc---CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 405 SVKVGERLFSVMVEKY---GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
....|.+.-++..+.. |-.+ .......+.+.|...|+.+.|..-|+++|+
T Consensus 221 ~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 221 RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 6666666655554321 2222 233345667777778888888777766664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.96 Score=42.34 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccccCCC-C----cccHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCcchHH
Q 009782 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTA-F----AFPWNSLISGYAE---LGEYEDAIALYFQMEEEGVEPDQFTFP 198 (526)
Q Consensus 127 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~ 198 (526)
.+...++-.|-...+++...++.+.+..... + +..-....-++.+ .|+.++|++++..+....-.++..||.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3444556668888999999999999876621 1 1122234455566 899999999999976666788889999
Q ss_pred HHHHHHhcc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH----HHHHHH---hh-cC-----
Q 009782 199 RVLKACAGL---------GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV----KARTVF---DR-IG----- 256 (526)
Q Consensus 199 ~ll~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~~----- 256 (526)
.+.+.|... ..+++|...|.+.-+. .||...--.++..+...|... +..++- .. ..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 988877521 2356677666655443 344332222222233333311 222222 11 10
Q ss_pred --CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 257 --NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 257 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..|-..+.+++.+..-.|+.++|.+..++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 123345667778888888888888888888765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.6 Score=42.84 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=117.4
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChh------HHHHHHHhcCCchHHHHHHHHHHHCCC--CCCHHHHHHH
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVV------SWNSIIHAHSKDHEALIYFEQMERDGV--LPDHLTFVSL 396 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 396 (526)
++..+|+..++.-.+.|+.+.+.-+|+...-|-.. -|.-.+...|+.+-|..++..-.+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888889999999999999877654221 233344445666666666655444222 2333333333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHhcCChHHHH---HHHHhhcCCCCCHHHHHHHH----H-
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYGRAGLIDEAY---SMIVEKMEFEASPVVWGALL----Y- 467 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~l~----~- 467 (526)
+ +-..|+.+.|..+++.+.+. . |+. ..-..-+....+.|+.+.+. +++.......-+..+...+. +
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 34568999999999999885 4 553 23233455567888888888 55533333233333333332 2
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
.+.-.++.+.|..++.++.+..|++...|..++......+..
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 234578999999999999999999998899888887766633
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.9 Score=43.65 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.1
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCChh
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVV 359 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 359 (526)
...|+..|...++++.|+.++-...++++.
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 345889999999999999999988876554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.3 Score=43.84 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=81.1
Q ss_pred cCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHhccCCHHHH
Q 009782 340 DGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHL--TF--VSLLSACAHLGSVKVG 409 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~--~~--~~ll~~~~~~~~~~~a 409 (526)
.|+.-+|...++++.+ .|...+.-.-.+ .|+.+.-...++++... ..||.. +| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 233333322222 25555555555555542 233332 22 2233334466777777
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HH--HHHHHHHHHhcCChHHHHHHH
Q 009782 410 ERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VV--WGALLYACYLHGNVCMGETAA 482 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~--~~~l~~~~~~~g~~~~a~~~~ 482 (526)
++.-++..+ +.+ |.-...+....+--.|++.++.++. ..-.-.-+. .. |-...-.+...+.++.|+++|
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM-~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFM-YKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHH-HhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 776666653 333 4455556666666777777777766 222111111 11 111112233456777777777
Q ss_pred HHHH--ccCCCCcchHH---HHHHHHHhcCChHHHHHHH
Q 009782 483 QKLF--ELEPDNEHNFE---LLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 483 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 516 (526)
++-. +++.+|..+.. .+-.+..+...|.+..++-
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 5532 35566554322 2333344444444444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.46 Score=42.13 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=58.2
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHH---HHHHHHhcCChH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGA---LLYACYLHGNVC 476 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 476 (526)
....|+..+|...|+..... .+-+...--.|..+|...|+.+.|..++ ..+...-...-+.. -+..+.+..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAIL-AALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556666666666666543 2223444455666666666666666666 55433322222222 122222222222
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 477 MGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+. ..+++-+.-+|+|...-..+...|...|+.++|.+.+=.+.
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 12233344556666666666666666666666665544443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.31 Score=47.27 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHH-HHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 69 LQALDSIIQDLE-SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 69 ~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
.++++++.+.++ .-.-. ..+....+.++.-+-+.|-++.|+++.. |+ ..-.....++|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHH
Confidence 455666555543 11111 1235557777777788888888887543 32 233455677888888888
Q ss_pred HHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 227 (526)
+.++... +..|..|.....+.|+++-|.+.|.+... |..|+-.|...|+.+...++.+.....|-
T Consensus 340 ~a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 340 IAKELDD----PEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HCCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 8776652 26788999999999999998888888653 56666677778888888777777776651
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 228 DGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
+|....++.-.|+.++..+++.+.
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555556667777777766554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.25 Score=39.81 Aligned_cols=91 Identities=7% Similarity=-0.040 Sum_probs=64.4
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 477 (526)
.+...|++++|..+|+-+..- + .-+..-+..|..++-..+++++|+..|.-+.-..+ |+..+-.....+...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 345678999999998888753 1 22555667788888888889999888844443333 34445556778888899999
Q ss_pred HHHHHHHHHccCCCC
Q 009782 478 GETAAQKLFELEPDN 492 (526)
Q Consensus 478 a~~~~~~~~~~~p~~ 492 (526)
|...|+.+.+ .|.+
T Consensus 124 A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 124 ARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHh-Ccch
Confidence 9888888877 3443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.068 Score=43.20 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH-------HhhcCCCCCHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-------VEKMEFEASPV 460 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~~p~~~ 460 (526)
....++..+...|+++.|..+.+.+... -+-+...|..+|.+|...|+..+|.+.| .+.+|..|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4455666666777777777777777753 3336677777777777777777777776 22336666653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.032 Score=31.57 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
.+..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.32 Score=40.31 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
..-+.+.|++++|..-|.+++..-|.. ..|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 344567888888888887777665543 34444555677888888888888888888888777777778888888
Q ss_pred CChHHHHHHHHHHHhCC
Q 009782 507 GRLDDVERVERMLVDRG 523 (526)
Q Consensus 507 g~~~~A~~~~~~m~~~g 523 (526)
.++++|++-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888877654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.2 Score=38.79 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=64.7
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---CH--HHHHHHHHHHHh---
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---SP--VVWGALLYACYL--- 471 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~--~~~~~l~~~~~~--- 471 (526)
.+.|++++|...|+.+..++...| ...+.-.++.++.+.+++++|+..+.+-+...| +. ..|...+.-+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 345677777777777766544444 344445556666677777777666644443333 32 222222222211
Q ss_pred -cCC---hHHHHHHHHHHHccCCCCcch-----------------HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 472 -HGN---VCMGETAAQKLFELEPDNEHN-----------------FELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 472 -~g~---~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..| ...|...++.++...|++..+ =...++-|.+.|.+..|..-+++|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 112 234445555555666665432 113456677777777777777776654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.028 Score=31.89 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
+|..++..+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566667777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.44 E-value=1 Score=35.90 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=48.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcC
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 173 (526)
...++..+...+.+......++.+...+ ..+...++.++..|++.+ ..+..+.++. . .+......++..|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K--SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--cccCCHHHHHHHHHHcC
Confidence 4455666666666777777777776665 356667777777777653 3344444442 1 11133344566666666
Q ss_pred ChHHHHHHHHHH
Q 009782 174 EYEDAIALYFQM 185 (526)
Q Consensus 174 ~~~~a~~~~~~m 185 (526)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.5 Score=41.66 Aligned_cols=326 Identities=12% Similarity=0.060 Sum_probs=185.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL--IRVGEKVHLDAVRFGFGFDGFVLNALVDMYA 240 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 240 (526)
..+|+-+...+.+..|+.+-..+...-..- ...|.....-+.+..+ -+.+.+.+++=.+... .+...|..+.....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 456777888888888888877765322121 4566666666655432 2233333322222222 34456777777777
Q ss_pred hcCCHHHHHHHHhhcCCC--------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHH
Q 009782 241 KCGDIVKARTVFDRIGNK--------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGA 312 (526)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~ 312 (526)
.+|+.+-|.++++.=+.. +..-+..-+.-....|+.+-...++-.+... - +-+.+.....+.-.|.
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~---~~s~l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---L---NRSSLFMTLRNQPLAL 592 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---H---HHHHHHHHHHhchhhh
Confidence 889999999888764432 2234455566667777777777777666553 1 1112222223334444
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHh-ccC------CC--CChhH-HHHHHHh---------cCCchH
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF-DHM------PQ--KDVVS-WNSIIHA---------HSKDHE 373 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~------~~--~~~~~-~~~li~~---------~~~~~~ 373 (526)
.++....+..-. ..+-+.|-...+...+-.+. +.. .. |+..+ ++..-.. +.+..+
T Consensus 593 ~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 593 SLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 444444432111 01112222222222111111 110 00 11111 1111111 111122
Q ss_pred HHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhh
Q 009782 374 ALIYFEQMER-DGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEK 452 (526)
Q Consensus 374 a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (526)
-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||...|..=+.+++..++|++-+++- +.
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA-ks 740 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA-KS 740 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH-hc
Confidence 3333333332 2333344456666677778899999998866653 478888888899999999999988776 44
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 453 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+ .+.-|..+..+|.+.|+.++|.+++-+.-. +...+.+|.+.|++.+|.++--+-
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 33 255677889999999999999888765322 236789999999999998875443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.24 Score=38.51 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=54.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh--hcCCCCcccHHHHHHHH
Q 009782 193 DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD--RIGNKDLISYNSMLTGY 270 (526)
Q Consensus 193 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~ 270 (526)
|..++..++.++++.|+++....+++.. -|+.++... ..+. +. .-..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 3456667777777777777666666432 122222110 0000 10 01126667778888888
Q ss_pred HhCCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHH
Q 009782 271 IHHGLLVEAFDIFRGMILN-GFDPDPVAISSILAN 304 (526)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~ 304 (526)
+..|++..|+++++...+. +++.+..++..++.-
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8888888888888877664 666566666555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.4 Score=39.28 Aligned_cols=82 Identities=18% Similarity=0.046 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009782 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLY 467 (526)
Q Consensus 388 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 467 (526)
|+..-|..-+.+++..+++++-.++-.. +-.+..|..++.+|.+.|+..+|..++ ..+. +..-+.
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~~~eA~~yI-~k~~-------~~~rv~ 270 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGNKKEASKYI-PKIP-------DEERVE 270 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCCHHHHHHHH-HhCC-------hHHHHH
Confidence 6777888888999999998877765322 124577888888888999988888888 4322 244566
Q ss_pred HHHhcCChHHHHHHHHH
Q 009782 468 ACYLHGNVCMGETAAQK 484 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~ 484 (526)
.|.+.|++.+|.+..-+
T Consensus 271 ~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 271 MYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888888888766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.7 Score=37.51 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=90.7
Q ss_pred cCCchHHHHHHHHHHH---CCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHh
Q 009782 368 HSKDHEALIYFEQMER---DGVLPDHLT--FVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGR 438 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~---~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~ 438 (526)
..+..++..++++... ..-.|+... ..-..+ .....+++.|++++++........- -...+....+.|.+
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 4445555555555322 122344332 222222 2345678888888887765311111 13455667778888
Q ss_pred cCChHHHHHHHHhhcC------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCCCcchHHHHHHHHHhcC
Q 009782 439 AGLIDEAYSMIVEKME------FEASP-VVWGALLYACYLHGNVCMGETAAQKLFE----LEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g 507 (526)
..++++|-..+.+..+ .-|+. ..+...|-.+....|+..|+..++.--+ ..|.+..+...|+.+|- .|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cC
Confidence 8888888777744432 23333 4566666677778899999999988655 34667778888988874 57
Q ss_pred ChHHHHHHH
Q 009782 508 RLDDVERVE 516 (526)
Q Consensus 508 ~~~~A~~~~ 516 (526)
+.+++.+++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 888877664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.77 Score=39.47 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA 170 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 170 (526)
...|.....+|....++++|..-+.+..+. .+.+...|.+ ..-.+.|.-+.+++...+--..-|+--...|.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455667777788888888888866665532 2333332222 22345555555555444332344666677788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhcCCH
Q 009782 171 ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-----GFDGFVLNALVDMYAKCGDI 245 (526)
Q Consensus 171 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~~ 245 (526)
.+|..+.|-..+++.-+. ....+++.|+++|++....-. ..-...+...-..+++...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 888877777666654331 122344555555554432110 11122344455566677777
Q ss_pred HHHHHHHhhcCC--------CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCcHHHHHHHHHHh--hhhHHH
Q 009782 246 VKARTVFDRIGN--------KDL-ISYNSMLTGYIHHGLLVEAFDIFRGMILNG---FDPDPVAISSILANA--SLLRIG 311 (526)
Q Consensus 246 ~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~--~~~~~a 311 (526)
++|-..|.+-.. ++. ..|-..|-.+.-..++..|.+.+++--+.+ -.-+..+...+|.++ |+.+.+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 777666554332 111 234455556666778888888887754432 122344566666666 555555
Q ss_pred HHHH
Q 009782 312 AQVH 315 (526)
Q Consensus 312 ~~~~ 315 (526)
..+.
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.56 Score=45.70 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009782 336 VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSV 415 (526)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 415 (526)
...-.|+++.|..++..+.++.......++...+-.++|++ +.+|...- .....+.|+++.|.++..+
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~---------~s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALE---------LSTDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred HHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhh---------cCCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 34456788888887777776554444455555555555554 33443322 2223567888888877655
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 416 MVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 416 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.. +..-|..|.++..+.|++..|.+.|.++.. |..|+-.+...|+.+....+.....+....
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---- 724 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN---- 724 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhccc----
Confidence 43 456788888888888998888888855553 455666666667666544444444443333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 009782 496 FELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+...-+|...|+++++.+++..
T Consensus 725 -N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 -NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -chHHHHHHHcCCHHHHHHHHHh
Confidence 3334566667777777766544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.14 Score=45.55 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.++..++..+...|+.+.+.+.+.+.+...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444455555555555555555544444444 335555555555555555555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.8 Score=41.76 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=79.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc------CCCCCH--
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM------EFEASP-- 459 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~p~~-- 459 (526)
...++..++...+.++++++.|+.+..-..-.. ....+..|...|.+..++++|.-+..++. +.+--.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 344566677777788888888887765311111 24567788888888888888765553333 222211
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHcc--CCCCc----chHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 460 ---VVWGALLYACYLHGNVCMGETAAQKLFEL--EPDNE----HNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 460 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.....+..++...|....|.+.-+++.++ .-.|. .....++++|...|+.+.|..-|++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22334455677788888888877777653 22222 33456788888888888877666553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.55 Score=46.21 Aligned_cols=148 Identities=12% Similarity=0.103 Sum_probs=86.1
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----------ccCCHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA----------HLGSVKVGERLFSVMVEKYGISPRVEHYA-CMVNLY 436 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----------~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~ 436 (526)
-|+.+.+++++.+-.+.+---.+..-..|+..+. ...+.+.+.++++.+.++ -|+...|. .-.+.+
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLFFEGRLE 277 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 4677778888777655221112222222332221 234667788888888764 46655543 334556
Q ss_pred HhcCChHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH-HHHHHhcCChH
Q 009782 437 GRAGLIDEAYSMIVEKMEFEAS-----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL-IKIYGNAGRLD 510 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~ 510 (526)
...|++++|++.|.+.+..... ...+--+...+...+++++|...+.++.+...-+...|..+ +.+|...|+.+
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence 6788888888888655532221 13344455667778888888888888888665544444433 34455667665
Q ss_pred HHHHHHHH
Q 009782 511 DVERVERM 518 (526)
Q Consensus 511 ~A~~~~~~ 518 (526)
.+.+.-++
T Consensus 358 ~~~~~~~~ 365 (468)
T PF10300_consen 358 EAKEHKKE 365 (468)
T ss_pred hhhhhHHH
Confidence 55444443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.31 Score=40.93 Aligned_cols=150 Identities=18% Similarity=0.112 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHL-TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 446 (526)
|-..-|.-=|.+... +.|+.. .||-|.-.+...|+++.|.+.|+...+ +.|. ..+...-.-++.--|++.-|.
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCchHhhH
Confidence 333444444454444 778754 788888888899999999999999875 4553 122211122333568888887
Q ss_pred HHHHhhcCCCCCH---HHHHHH--------------HHHHHhcCChH-------------HHHHHHHHHHccCCCC----
Q 009782 447 SMIVEKMEFEASP---VVWGAL--------------LYACYLHGNVC-------------MGETAAQKLFELEPDN---- 492 (526)
Q Consensus 447 ~~~~~~~~~~p~~---~~~~~l--------------~~~~~~~g~~~-------------~a~~~~~~~~~~~p~~---- 492 (526)
+-+.+--..+|+. ..|--+ ...+....+-. ..+.+++++..-..++
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~A 233 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLA 233 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHH
Confidence 7663333333322 222222 22222221110 0112233333322222
Q ss_pred ---cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 493 ---EHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 493 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..+|..|++-|...|+.++|..+|+-....+
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3468889999999999999999998776544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.9 Score=41.32 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=93.6
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCC-CCh---------hHHHHHHHh-cCC------chHHHHHHHHHHHCCCCCCHH
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQ-KDV---------VSWNSIIHA-HSK------DHEALIYFEQMERDGVLPDHL 391 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~li~~-~~~------~~~a~~~~~~m~~~~~~p~~~ 391 (526)
.+..++....-.|+-+.+++.+.+..+ .+. ..|...+.. ++. .+.|.++++.+.+ .-|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 345677777788999999998887665 222 234444443 232 1568999999887 467776
Q ss_pred HHHHH-HHHHhccCCHHHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 392 TFVSL-LSACAHLGSVKVGERLFSVMVEKY-GIS-PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 392 ~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
.|... .+.+...|++++|.+.|+...... ..+ .....+--++..+.-.++|++|.+.|.+....+.-. .+|.-+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 344567899999999999765420 111 123445566777888999999999996666555544 44444444
Q ss_pred H-HHhcCCh
Q 009782 468 A-CYLHGNV 475 (526)
Q Consensus 468 ~-~~~~g~~ 475 (526)
+ +...|+.
T Consensus 348 ~c~~~l~~~ 356 (468)
T PF10300_consen 348 ACLLMLGRE 356 (468)
T ss_pred HHHHhhccc
Confidence 3 3456766
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.4 Score=35.44 Aligned_cols=109 Identities=18% Similarity=0.101 Sum_probs=62.4
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 477 (526)
.-...++.+.+..++..+. -+.|..... ..-...+.+.|+|.+|..++.+.....|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456778888888888886 456643332 233455678889999999995555555555555666665554333222
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
=..+.+++++..++ +. -..+++.+....+...|
T Consensus 96 Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PD-ARALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccch
Confidence 23344445555443 33 34455555544444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.07 Score=30.77 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+|..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888743
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.25 Score=43.24 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC----------------ChHHHHHHHH
Q 009782 160 FPWNSLISGYAEL-----GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG----------------LIRVGEKVHL 218 (526)
Q Consensus 160 ~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----------------~~~~a~~~~~ 218 (526)
.+|-+.+..+... +.++=....++.|.+-|+.-|..+|+.|++.+=+-. +-+-+.++++
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 3444444444332 344555556677888888888888888887764321 2356888999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhcC
Q 009782 219 DAVRFGFGFDGFVLNALVDMYAKCGD-IVKARTVFDRIG 256 (526)
Q Consensus 219 ~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 256 (526)
+|...|+-||-.+-..|++++.+.+- ..+..++.-.|+
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999988775 334444444444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.3 Score=37.85 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=57.2
Q ss_pred hHHHHHHhccCCC-------CChhHHHHHHHhcCCc-----hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--H
Q 009782 343 LDQACWLFDHMPQ-------KDVVSWNSIIHAHSKD-----HEALIYFEQMERDGVLPDHL--TFVSLLSACAHLGS--V 406 (526)
Q Consensus 343 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~-----~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~ 406 (526)
..+|..+|+.|++ ++...+..|+..-... +.+..+|+.+...|+..+.. ....++..+..... .
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v 198 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKV 198 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHH
Confidence 3456667777764 4445566665553222 55778888888878776544 34444443333322 3
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 407 KVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
..+.++++.+.+. |+++....|..+.-.
T Consensus 199 ~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 199 ARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 4778888888887 888887777665443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.076 Score=47.61 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=76.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHG 473 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 473 (526)
-..-|.++|.+++|+..+.... .+.| |..++..-..+|.+..++..|..-...++..+-.- ..|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3456778899999999888876 4566 78888888888888888888887775665433221 44555555555677
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
+..+|.+-++.+++++|.+.. |-..|.+.....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 888888888999999988543 44444444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.69 E-value=5.1 Score=42.80 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=16.0
Q ss_pred HHHHHHhcCChHHHHHHhccCCC
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
.+..|++...|++|.++.....+
T Consensus 1032 av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHHhhHhHHHHHHHHHHhccc
Confidence 44567777778888887766554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.68 E-value=4 Score=38.63 Aligned_cols=117 Identities=10% Similarity=0.004 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---CC-----
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP---RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EA----- 457 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p----- 457 (526)
...++..+.+.+.+.|.++.|...+..+... +... .+...-.-.+.+...|+..+|+..+.+.+.. .+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3446777777788888888888888777653 2111 2333444566677777777777766333320 00
Q ss_pred --------------------CH-------HHHHHHHHHHHhc------CChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 458 --------------------SP-------VVWGALLYACYLH------GNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 458 --------------------~~-------~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
+. ..+..+..-+... ++.+++.+.|+.+.++.|....+|..++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 00 1222222223334 77888999999999999998888888877776
Q ss_pred hc
Q 009782 505 NA 506 (526)
Q Consensus 505 ~~ 506 (526)
+.
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 54
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.61 E-value=4.5 Score=39.03 Aligned_cols=101 Identities=11% Similarity=0.183 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-C-CCCH--HHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-F-EASP--VVWGALL 466 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~p~~--~~~~~l~ 466 (526)
.+-..|..++-+.|+.++|.+.++++.+.+...-+......|+.++...+.+.++..++ .... . -|.. ..|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL-~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL-AKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH-HHhccccCCchHHHHHHHHH
Confidence 33344666666778888888888888764222223456677888888888888888877 3332 1 2332 5555554
Q ss_pred HHHHhcCC---------------hHHHHHHHHHHHccCCCC
Q 009782 467 YACYLHGN---------------VCMGETAAQKLFELEPDN 492 (526)
Q Consensus 467 ~~~~~~g~---------------~~~a~~~~~~~~~~~p~~ 492 (526)
-.+...++ -..|.+.+.++.+.+|.-
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 43333332 123557777777766653
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.51 Score=36.13 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=59.0
Q ss_pred HHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc----chHHHHHHHHHhcCCh
Q 009782 435 LYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE----HNFELLIKIYGNAGRL 509 (526)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 509 (526)
++...|+.+.|++.|.+.+..-| ....||.-..++.-+|+.++|+.-+++++++..+.. .+|.--+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45567777777777777776666 346777777777777777777777777777543211 2345556667777777
Q ss_pred HHHHHHHHHHHhCC
Q 009782 510 DDVERVERMLVDRG 523 (526)
Q Consensus 510 ~~A~~~~~~m~~~g 523 (526)
+.|..-|+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777666665544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.077 Score=32.31 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
++..+...|.+.|++++|.++|.+.+...|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777776666666644
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.46 Score=41.69 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=70.1
Q ss_pred HHHHhhcC--CCCcccHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh----------------
Q 009782 249 RTVFDRIG--NKDLISYNSMLTGYIH-----HGLLVEAFDIFRGMILNGFDPDPVAISSILANA---------------- 305 (526)
Q Consensus 249 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---------------- 305 (526)
++.|.... +.|..+|-+.+..+.. .++.+-....++.|.+-|+.-|..+|..+|.-+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 4555666666665543 355666667788888888888888888888655
Q ss_pred ---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh
Q 009782 306 ---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKL 343 (526)
Q Consensus 306 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (526)
.+-+-+..++++|...|+.||-.+-..+++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 33457888999999999999999999999999887754
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=3.2 Score=36.07 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=58.3
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhc
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS--PVVWGALLYACYLH 472 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 472 (526)
.+...|+++.+...++.... ..| ....+......+...++.+.|...+.+.+...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 44555555555555555532 111 2222222333344455555555555555544444 24455555555555
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++++.|...+.......|.....+..+...+...|.++++...+.+..
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555533334444444444445555555554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.8 Score=42.16 Aligned_cols=158 Identities=10% Similarity=0.086 Sum_probs=80.0
Q ss_pred HHHhcCChHHHHHHHH--HHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 009782 168 GYAELGEYEDAIALYF--QMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI 245 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~--~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 245 (526)
...-.++++++.++.+ ++.. .+ | ..-.+.+++-+.+.|..+.|+++-.+ . ..-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 3444566666555554 1111 11 1 23356666666667777766665322 1 1233445566777
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC
Q 009782 246 VKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW 325 (526)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~ 325 (526)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. |......+....|+.+.-.++.+.....|.
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 77766665554 44467777777777777777777666542 223333333334666665555555554442
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
++....++.-.|++++..+++.+..
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3555556666777777777776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.2 Score=40.99 Aligned_cols=60 Identities=12% Similarity=-0.008 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP---VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
-..|..+..+.|+.++|++.+.+.++..|.. .....|+.++...+.+.++..++.+.-++
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3456666677788888888886666555532 45667777777788888777777775443
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.15 E-value=4.5 Score=37.01 Aligned_cols=129 Identities=11% Similarity=0.173 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHHHHh--c----CChhHHHHHHhccccCCCCc-----ccHHHHHHHHHhcCC-
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT--F----GLIDEAHQVFDQMSNRTAFA-----FPWNSLISGYAELGE- 174 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~- 174 (526)
++....+++.+.+.|+..+..++-+....... . .....|.++++.|++..|.. .++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788889999998888777664433333 1 23557889999998876532 345555444 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 009782 175 ---YEDAIALYFQMEEEGVEPDQF--TFPRVLKACAGLGL--IRVGEKVHLDAVRFGFGFDGFVLNALVD 237 (526)
Q Consensus 175 ---~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 237 (526)
.+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356677788888877765554 23333333332222 3467788888888888877776665543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.7 Score=34.36 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC--ChhHHHHHHh
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG--LIDEAHQVFD 150 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~ 150 (526)
.-.++.++.+.+.+++|+...+..+++.+.+.|.+....+ +.+.++-+|.......+-.+.... -.+-|.+.+.
T Consensus 11 ~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 11 AVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHH
Confidence 3456778888889999999999999999999998775444 445555555544444443332211 1334555555
Q ss_pred ccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 151 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
++. ..+..++..+...|++-+|+++.+.... .+......++.+....+|...-..+++-..+.+
T Consensus 87 RL~------~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 RLG------TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred Hhh------hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 553 2577888999999999999999877532 223334556777777777766666666655543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=3.9 Score=35.82 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-------cCChHH---HHHHHHhhcCCCCCH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-------AGLIDE---AYSMIVEKMEFEASP 459 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~~---A~~~~~~~~~~~p~~ 459 (526)
..+...++-++.+.++++.|...+++....++-.||+. |...+.++.. ..+... |..-|.+.+..-|+.
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 44666677777788888888888888887766666543 3333333332 123333 333333333333332
Q ss_pred ------HH-----------H-HHHHHHHHhcCChHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChHHHHHHHHH
Q 009782 460 ------VV-----------W-GALLYACYLHGNVCMGETAAQKLFELEPDNEH---NFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 460 ------~~-----------~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
.. + ..+.+-|.+.|.+..|..-++.+++.-|+... ++..+..+|.+.|-.++|.+.-+-
T Consensus 150 ~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 150 RYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 11 0 22345678899999999999999987666444 466678889999999998876554
Q ss_pred HH
Q 009782 519 LV 520 (526)
Q Consensus 519 m~ 520 (526)
+.
T Consensus 230 l~ 231 (254)
T COG4105 230 LG 231 (254)
T ss_pred HH
Confidence 43
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.81 E-value=4.7 Score=36.06 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
+...+++++.... +....+... ......+++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+
T Consensus 120 sqlr~~ld~~~~~---~~e~~~~~~-~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 120 SQLRQFLDKVLPA---EEEEALAEA-KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHHhcCh---HHHHHHHHh-hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3455555555422 333333333 34457788999999998888764 344566777888999999999999999998
Q ss_pred ccCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCc
Q 009782 153 SNRTAFA--FPWNSLISGYAELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFD 228 (526)
Q Consensus 153 ~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~ 228 (526)
+....+. .....-|..+.+.....+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+... .-|
T Consensus 195 P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 195 PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 7664321 1122334455555555555555444443 24 444445566666677777777766555544321 223
Q ss_pred hhHHHHHHHHHHhcC
Q 009782 229 GFVLNALVDMYAKCG 243 (526)
Q Consensus 229 ~~~~~~li~~~~~~g 243 (526)
...-..|+..+.-.|
T Consensus 272 ~~~Rk~lle~f~~~g 286 (304)
T COG3118 272 GEARKTLLELFEAFG 286 (304)
T ss_pred cHHHHHHHHHHHhcC
Confidence 334444555544444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=3.1 Score=33.88 Aligned_cols=130 Identities=13% Similarity=0.072 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChh-HHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHH----
Q 009782 92 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKG-ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLI---- 166 (526)
Q Consensus 92 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li---- 166 (526)
..|...++. ++.+..++|+.-|..+.+.|...-+. ..-.........|+...|...|+++....+.|....-+.
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 344444432 34555666666666666655332221 111222334456666666666666655544333322111
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 167 -SGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 167 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
-.+..+|.+++...-.+.+-..+-+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12344556666555555554433222222233333344455556666555555544
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.19 Score=42.90 Aligned_cols=85 Identities=11% Similarity=-0.030 Sum_probs=49.4
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCChHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEH-YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVW-GALLYACYLHGNVCM 477 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~ 477 (526)
|.....++.|...+.+.. -+.|+..+ |+.=+..+.+..+++.+..-..+++.+.|+..-- --+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455666666555554 45665533 3444555666677777766666666666666333 333344556666777
Q ss_pred HHHHHHHHHc
Q 009782 478 GETAAQKLFE 487 (526)
Q Consensus 478 a~~~~~~~~~ 487 (526)
|+..++++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.71 E-value=9.1 Score=39.05 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=77.4
Q ss_pred HHHHHhcCChhHHHHHHhccccCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC
Q 009782 133 LRLYATFGLIDEAHQVFDQMSNRTAF---AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 209 (526)
Q Consensus 133 l~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 209 (526)
++.+.+.+.+++|++.-+......+. ...+...|..+.-.|++++|-...-.|... +..-|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 55566777888888877766554432 245777788888888888887777666542 33334444444444443
Q ss_pred hHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------------------CCcccHHHHHH
Q 009782 210 IRVGEKVHLDAVRFG-FGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--------------------KDLISYNSMLT 268 (526)
Q Consensus 210 ~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~li~ 268 (526)
......++ -.| ...+...|..++..+.. .+...-.+...+-.. .+...-..|+.
T Consensus 439 l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 32221110 001 01223334444444433 222222222111110 12223344888
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 009782 269 GYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~ 288 (526)
.|...+++.+|..++-..++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 89999999999988876654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.69 E-value=12 Score=40.28 Aligned_cols=146 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh-------hhhHHHHHHH
Q 009782 243 GDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA-------SLLRIGAQVH 315 (526)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------~~~~~a~~~~ 315 (526)
++++.|+..+.++. ...|...++.--++|.+++|+.++ +|+...+..+..++ ..++.|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555555544 223344444444555566665554 24444443333333 2333333333
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhH------HHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVS------WNSIIHAHSKDHEALIYFEQMERDGVLPD 389 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~li~~~~~~~~a~~~~~~m~~~~~~p~ 389 (526)
+..-+. .-.+.+|..+|+|.+|+.+..++..+-... ....+...+++-+|-+++.+-.. |
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-----d 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-----D 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----C
Confidence 322111 234567888888888888888776532211 11122224555555555555433 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVM 416 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 416 (526)
..-.+..+++...+++|..+-...
T Consensus 1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 223344456666777777665544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.14 Score=28.91 Aligned_cols=30 Identities=20% Similarity=0.086 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
+|..+...+...|++++|...|++++++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666666555
|
... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.48 E-value=3.2 Score=33.06 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 207 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 207 (526)
...++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455666655566666666666665554 24444555555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.15 Score=29.32 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.6 Score=34.27 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=46.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhhcC-CCCCHHHHHHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRV----EHYACMVNLYGRAGLIDEAYSMIVEKME-FEASPVVWGALLYACY 470 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~ 470 (526)
+...+...+++++|+..++..... +.|. ..--.|.+.....|.+++|+..+ +... ..-.......-...+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L-~t~~~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTL-DTIKEESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hccccccHHHHHHHHhhhHHH
Confidence 334455666666666666655422 2221 11123344555666666666666 3332 1112222333345566
Q ss_pred hcCChHHHHHHHHHHHccC
Q 009782 471 LHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~ 489 (526)
..|+-++|...|+++++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6666666666666666655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.6 Score=32.59 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
.+..++.+...|+-++-.++++++.+. -++++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 455566677777777777777776643 256666666777777777777777777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.33 E-value=20 Score=41.81 Aligned_cols=363 Identities=13% Similarity=0.050 Sum_probs=181.3
Q ss_pred HHHHccCChHHHHHHHHHHhhhcc--CCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChH
Q 009782 99 ETCYQLKAVEHGIKLHRLIPTNLL--RKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 176 (526)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 176 (526)
.+--+.+.+..|...++.-..... ......+-.+...|+.-+++|...-+... ...++ +...-|......|++.
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc---cHHHHHHHHHhhccHH
Confidence 344456667777777766311100 11223333444478888888877766653 11122 2334455566778888
Q ss_pred HHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCCHHHHHHHHhh
Q 009782 177 DAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLN-ALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 177 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~ 254 (526)
.|...|+.+.+.+ |+ ..+++-+++.....|.++.+.-..+.....- .+....++ .=+.+-.+.++++.......
T Consensus 1467 da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 8888888888753 44 5677777777667777776666544443321 22222222 22344467777777777666
Q ss_pred cCCCCcccHHHH--HHHHHhCCChHH--HHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC-CchhH
Q 009782 255 IGNKDLISYNSM--LTGYIHHGLLVE--AFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE-WDLCI 329 (526)
Q Consensus 255 ~~~~~~~~~~~l--i~~~~~~g~~~~--a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 329 (526)
..+..+|... .....+...-|. -.+..+-+.+.-+.| +.+| +.. .=...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~----------------s~~~Sy~~~ 1596 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSAC----------------SIEGSYVRS 1596 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHh----------------hccchHHHH
Confidence 4445555443 222222221111 111222222210000 0000 000 00123
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCC-----CChhHHHHHHHh---cCCchH-HHHHHHHHHHC----CCCCC-HHHHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQ-----KDVVSWNSIIHA---HSKDHE-ALIYFEQMERD----GVLPD-HLTFVS 395 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~---~~~~~~-a~~~~~~m~~~----~~~p~-~~~~~~ 395 (526)
|..+++.+.-.. .+.-.+.+..... .+...|..-+.- +.+..+ .+..=+-+... +..-. ..+|..
T Consensus 1597 Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1597 YEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 344444433222 1222222222221 111223222222 222222 11211222221 22222 347888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC-CCCC--------HHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-FEAS--------PVVWGALL 466 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~--------~~~~~~l~ 466 (526)
..+...+.|.++.|...+-.+.+. + .|. .+--..+.+...|+...|+.++++.++ ..|+ +..-+.++
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~-r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i 1751 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKES-R-LPE--IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLI 1751 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhc-c-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhh
Confidence 888888899999999888887764 3 333 445667888999999999999966662 1222 22222222
Q ss_pred HH--------H-HhcCC--hHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 467 YA--------C-YLHGN--VCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 467 ~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
.. | ...|+ .+..++.|.++.++.|.....+..++
T Consensus 1752 ~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1752 FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 21 2 23444 34566788888888886555555555
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.38 Score=43.37 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=46.6
Q ss_pred cCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 446 (526)
.|++++|+++|..-.. +.| |..++..-..+|.+...+..|+.-...+... -..-...|..-+.+-...|+..+|.
T Consensus 110 QgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred ccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3566677777766554 445 6666666666777776666666555554432 0001222333333333344555555
Q ss_pred HHHHhhcCCCCCH
Q 009782 447 SMIVEKMEFEASP 459 (526)
Q Consensus 447 ~~~~~~~~~~p~~ 459 (526)
+-++..+...|+.
T Consensus 186 kD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 186 KDCETVLALEPKN 198 (536)
T ss_pred HhHHHHHhhCccc
Confidence 5555555666653
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.79 Score=37.54 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcC-----------ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 442 IDEAYSMIVEKMEFEASP-VVWGALLYACYLHG-----------NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 442 ~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
+++|+.-|++++.++|+. .++..+..++...+ .+++|...|+++...+|.|.. |..-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRKSLEMA------ 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHH------
Confidence 345555556666777865 66666666665433 256667777777778888766 55544443
Q ss_pred HHHHHHHHHHHhCCC
Q 009782 510 DDVERVERMLVDRGL 524 (526)
Q Consensus 510 ~~A~~~~~~m~~~g~ 524 (526)
++|-++..++.+.++
T Consensus 124 ~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 AKAPELHMEIHKQGL 138 (186)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HhhHHHHHHHHHHHh
Confidence 346666666665553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.3 Score=35.98 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=17.1
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCC
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
-.+|.-+-.+.|++.+|...|..+.
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHH
Confidence 3456666667778877777777655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.15 E-value=6.6 Score=35.73 Aligned_cols=160 Identities=13% Similarity=0.044 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-------ccC-ChHHHHHHHHHHhhh--------ccCCCh----
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCY-------QLK-AVEHGIKLHRLIPTN--------LLRKNK---- 126 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 126 (526)
.+.|+++.|..++.+........++.....+...|. ..+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 466788888888877765432223333333333222 234 666666665554332 111222
Q ss_pred -hHHHHHHHHHHhcCChh---HHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009782 127 -GISSKLLRLYATFGLID---EAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 201 (526)
Q Consensus 127 -~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 201 (526)
.++..++.+|...+..+ +|.++++.+....++ +..+-.-+..+.+.++.+.+.+.+.+|... +......+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 34555666666655443 455555555444443 355556666666677777788888777764 222334455555
Q ss_pred HHHhc--cCChHHHHHHHHHHHHhCCCC
Q 009782 202 KACAG--LGLIRVGEKVHLDAVRFGFGF 227 (526)
Q Consensus 202 ~~~~~--~g~~~~a~~~~~~~~~~g~~~ 227 (526)
..+.. ......+...++.+....+.|
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCC
Confidence 44421 122344555555544433333
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.95 E-value=5.7 Score=34.43 Aligned_cols=219 Identities=18% Similarity=0.147 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHhhh-ccCCChhHHHHHHHHHHhcCChhHHH
Q 009782 69 LQALDSIIQDLESSVQNGITV-QTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAH 146 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~ 146 (526)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555443321 3456666667777777777777777766652 22444555666666666777777888
Q ss_pred HHHhccccCCCCc-ccHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----CcchHHHHHHHHhccCChHHHHHHHHHH
Q 009782 147 QVFDQMSNRTAFA-FPWNSLIS-GYAELGEYEDAIALYFQMEEEGVEP----DQFTFPRVLKACAGLGLIRVGEKVHLDA 220 (526)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 220 (526)
+.+.......+.. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 8877776654432 22233333 57777888888888877754 222 2222333333345667777777777777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 221 VRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 221 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
...........+..+...+...++++.|...+........ ..+..+...+...+..+.+...+.+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6653211355566666667777777777777766654332 23333333344555566666666665553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.012 Score=47.54 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHh
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFD 150 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 150 (526)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433445555555555555555555555555
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=8.6 Score=34.96 Aligned_cols=61 Identities=10% Similarity=-0.057 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
+..+-...+.++.+.|+ ..|+..+.+.++. ++ .....+.++...|+. +|...+.++.+..|
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444445555444 2333333344432 22 122344444555543 45555555555444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.26 E-value=1 Score=32.38 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
.-++.+-++.+......|++....+.+++|.|.+++..|.++++-+.... ..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34566677777778888899999999999999999999999988777432 224456666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.3 Score=32.26 Aligned_cols=61 Identities=11% Similarity=0.218 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 74 SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 74 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
++.+-++.+....+.|++....+.+++|.|.+++..|.++++-+...- ......|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 556666777777888888888888888888888888888888776542 2333367666643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.13 E-value=5.4 Score=32.25 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=25.7
Q ss_pred ccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC
Q 009782 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157 (526)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 157 (526)
+.++.+++..++..+.-.. +.....-..-...+...|++.+|..+|+++....+
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 4455666666665554421 11111112222334555666666666666655544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.31 Score=27.35 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 494 HNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 358899999999999999999999987643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.4 Score=39.20 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHH
Q 009782 475 VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR----LDDVERVERML 519 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m 519 (526)
+++|+.-|++++.++|+...++..++.+|...+. ..+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777888888999999999999999987653 33455555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.19 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCC
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 458 (526)
.|..+...|...|++++|+..|.+++.+.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666677777777777777666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.1 Score=29.58 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=15.5
Q ss_pred hhcCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 009782 451 EKMEFEAS-PVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 451 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 479 (526)
+++...|+ ...|..+...+...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44444553 355555555555666555553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.99 E-value=17 Score=37.62 Aligned_cols=177 Identities=11% Similarity=0.112 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH----HhcCChhHHHHHHhcc-ccCCCCcccHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY----ATFGLIDEAHQVFDQM-SNRTAFAFPWNSL 165 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~-~~~~~~~~~~~~l 165 (526)
......-+..+.+...++-|..+-.. . ..+..+...+...| -+.|++++|...+-+- .-.+| ..+
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~V 403 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEV 403 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHH
Confidence 44555666666676677777665432 2 33444444444444 4578899888776544 33344 346
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCC
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF-GFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~ 244 (526)
|.-|....+...--..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|. ..| ....+..+-+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 66777777777888888888888764 44555678888998888887776665543 221 112 2344555566666
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 009782 245 IVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286 (526)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (526)
.++|..+-..... +.. .+--.+-..|++++|++++..+
T Consensus 479 l~~a~~LA~k~~~-he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 6666655544443 222 2222344567788888877765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.2 Score=39.74 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCcchHHH
Q 009782 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEE-----EGVEPDQFTFPR 199 (526)
Q Consensus 126 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~~ 199 (526)
..++..++..+..+|+.+.+.+.++++...+|-. ..|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3455667777777788888888888877776633 5677888888888888888888877655 366666655544
Q ss_pred HHHH
Q 009782 200 VLKA 203 (526)
Q Consensus 200 ll~~ 203 (526)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.21 E-value=5.1 Score=33.48 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=24.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 449 (526)
.+..+...|++.|+.+.|.+.+.++.+. ...+. ...+-.+++...-.+++..+...+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444444444444444444444444432 22221 223334444444444444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.5 Score=34.67 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=40.7
Q ss_pred hcCChHHHHHHHHhhc-CCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 438 RAGLIDEAYSMIVEKM-EFEASPVVWGA-LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
..++++++..++ +.+ -..|+..-... -...+...|++.+|.++++.+.+-.+..+..-..+..++.-.|+
T Consensus 22 ~~~d~~D~e~lL-dALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAML-DALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHH-HHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 467777777777 444 34554422222 23345677777777777777776666655444445555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.11 E-value=37 Score=39.85 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+|-...+...+.|+++.|....-.+.+..+ +.++-..++.+...|+...|..++++-.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7788888888999999999988888877663 3467888999999999999999998877544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.35 Score=25.33 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 009782 495 NFELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
+...++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.96 E-value=6.8 Score=31.14 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=41.2
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEH-YACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYAC 469 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 469 (526)
...++.+++..+++.+. -+.|+..- -..-...+...|+|++|.+++.+..+..+....-..|+..|
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34788999999999886 45664322 22334557789999999999944444343433333444333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.51 Score=27.98 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+++.|+.+|...|++++|.+++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 567777888888888888887777653
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.2 Score=45.15 Aligned_cols=85 Identities=9% Similarity=0.120 Sum_probs=42.1
Q ss_pred cCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 009782 439 AGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVER 517 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (526)
.|.++.|++.|..++...|.. ..|..=.+++.+.++...|++-+..+++++|+...-|-.-..+-...|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 344555555554555544443 3333333444455555555555555555555554444444445455555555555555
Q ss_pred HHHhCC
Q 009782 518 MLVDRG 523 (526)
Q Consensus 518 ~m~~~g 523 (526)
...+.+
T Consensus 207 ~a~kld 212 (377)
T KOG1308|consen 207 LACKLD 212 (377)
T ss_pred HHHhcc
Confidence 544443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.27 Score=39.52 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=22.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444444444333333444444445555444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.22 E-value=2 Score=41.91 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=76.5
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 477 (526)
...|+...|...+..+. ...|- ......|.+.+.+.|...+|-.++.+.+.+.- .+.++..+.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 45688888888887776 44552 33445667777788888888888877776553 44677888888999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
|++.+++++++.|+++..-+.|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998887777766554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.6 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=10.8
Q ss_pred HHHHhcCChHHHHHHHHHHHccCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.++.+.|+.++|.+.++++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444444444444444444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.95 E-value=3.5 Score=34.46 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=32.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ--FTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+++.....|++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3555566666666666666666665554322221 2344455555556666666555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.93 E-value=27 Score=36.28 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 128 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
....-+..+.+..-++-|..+-+.-...... ........+-+.+.|++++|...|-+-... +.| ..++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 3445667777777788888776544322111 122333445566789999999888776532 233 235666666
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc--cHHHHHHHHHhCCChHHHHHHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLI--SYNSMLTGYIHHGLLVEAFDIFR 284 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~ 284 (526)
...+..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.... ... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 66777777788888888865 444457799999999999999998888773 222 24556667777777777766544
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+... .......++...+++++|...+..+
T Consensus 488 k~~~-----he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 4322 4455666677777788877766553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.83 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+|..++.+|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999988753
|
... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.68 E-value=5.3 Score=29.12 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
-++|..+-+++...+.. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.. .|-.+++..-+.+|..+|
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 45555666665554432 222333345678899999999999999988999999888777 566676777777777665
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.65 E-value=23 Score=35.17 Aligned_cols=123 Identities=14% Similarity=0.037 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCC-CCHHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE-ASPVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~ 467 (526)
+..+|...+.--...|+.+.+.-.++.... .+..-...|-..+.-....|+.+-|..++.....+. |.......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 345788888888888888888888887754 233334556666666666688888887774444322 22222222222
Q ss_pred H-HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH
Q 009782 468 A-CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 468 ~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
+ +-..|++..|..+++++.+-.|.....-..-+....+.|+.+.+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 2 345678899999998888766776665555666777788887776
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.61 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998864
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.6 Score=38.72 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++.....|..+|.+.+|.++-++++.++|-+...+..|+..|...|+--+|.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455677888888888888888888888888888888888888888777777776664
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.85 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.+++.+...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777777665
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.96 E-value=8.7 Score=34.42 Aligned_cols=100 Identities=8% Similarity=0.096 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHhc-cC-CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC-CC--CHH
Q 009782 386 VLPDHLTFVSLLSACAH-LG-SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF-EA--SPV 460 (526)
Q Consensus 386 ~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p--~~~ 460 (526)
+--|..+...+++.... .+ ....-.++.+-+...++-.++..+....++.++..+++.+-.+++....+. .| |..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 34456666666666554 22 334445666666666677888888889999999999999999999555543 34 668
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKL 485 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~ 485 (526)
.|..++......||..-...+..+-
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 8999999999999987776666553
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.89 Score=27.53 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..|..+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788888888888888888887544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.64 E-value=3.4 Score=29.89 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
++.+-++.+....+-|++....+.+++|.+.+++..|.++|+....+ ...+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 45555666666778899999999999999999999999999888754 3324456666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.55 E-value=15 Score=36.50 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHH
Q 009782 136 YATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEK 215 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 215 (526)
..+.|+++.|.++..+.... .-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....
T Consensus 647 al~lgrl~iA~~la~e~~s~----~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEANSE----VKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhcCcHHHHHHHHHhhcch----HHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 34567777777666554333 4477777777777777777777766543 4455556666666665555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
+-....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555542 133334555667777777666543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.2 Score=28.37 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=24.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.+.-++.+.|+++.|.+..+.+++++|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567888999999999999999999998763
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.80 E-value=15 Score=30.77 Aligned_cols=129 Identities=9% Similarity=-0.037 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY--ACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGA 464 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ 464 (526)
..|..++.+.. .+.. +.....+.+...++ ......+ -.+...+..+|++++|...+...++...|. .+-..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~-~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG-KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 34555555443 2333 44444455544311 1111222 234566788999999999887777644343 22234
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|.+.....|.+++|+..++...+-.-. +.....-+++|...|+.++|+.-|++....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 556677888898888877754332211 1224456788999999999999888887764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.77 E-value=3.2 Score=30.36 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+.+..+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 34455556666778899999999999999999999999999998875 33333377766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.54 E-value=22 Score=32.34 Aligned_cols=18 Identities=11% Similarity=-0.140 Sum_probs=11.6
Q ss_pred HHhcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~ 486 (526)
+.+.++++.|.+.|+-.+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445667777777776543
|
It is also involved in sporulation []. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.34 E-value=9.4 Score=27.89 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346666666666554411 22222233455678999999999999999999998877654 466777777777878877
Q ss_pred cCCCCcHHHHHH
Q 009782 289 NGFDPDPVAISS 300 (526)
Q Consensus 289 ~~~~p~~~~~~~ 300 (526)
.| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 455555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.09 E-value=16 Score=37.72 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=33.4
Q ss_pred HHHHHhcCChHHHHHHhcc--CCCCChhHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---cCCHH
Q 009782 334 IVVYSKDGKLDQACWLFDH--MPQKDVVSWNSIIHAHSKDHEALIYFEQMERDG-VLPDHLTFVSLLSACAH---LGSVK 407 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~---~~~~~ 407 (526)
..++.-.|.+|.|.+.+-. ....+.+.+.+.+..+|-..-....-..+.... -.|...-+..||..|.+ ..+..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~ 344 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPR 344 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-HH
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHH
Confidence 4555566777777776665 223455555555555443322111112222210 01111445556665553 34666
Q ss_pred HHHHHHHHHH
Q 009782 408 VGERLFSVMV 417 (526)
Q Consensus 408 ~a~~~~~~~~ 417 (526)
+|.+++--+.
T Consensus 345 ~Al~Y~~li~ 354 (613)
T PF04097_consen 345 EALQYLYLIC 354 (613)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=3.5 Score=36.96 Aligned_cols=64 Identities=6% Similarity=-0.054 Sum_probs=31.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 431 CMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.+-.+|.+.++++.|+++.+..+...|+. .-+.--+-.|.+.|.+..|..-++..++.-|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 33344455555555555554444445532 33333444455555555555555555555555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.71 E-value=19 Score=30.77 Aligned_cols=178 Identities=13% Similarity=0.010 Sum_probs=100.8
Q ss_pred CChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH--HHhcCChHHHHHHH
Q 009782 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG--YAELGEYEDAIALY 182 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~ 182 (526)
|-+..|.-=|.+..... +.-+.++|-+.--+...|+++.|.+.|+...+.+|. .-|..+=++ +--.|+++-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHH
Confidence 33344444444444332 334678888888888999999999999999888873 223333322 23468888888877
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHhhcCCCC--
Q 009782 183 FQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNA-LVDMYAKCGDIVKARTVFDRIGNKD-- 259 (526)
Q Consensus 183 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~-- 259 (526)
...-+.. |+..--...+-.-...-++.+|..-+.+--+ ..|..-|.. ++..|...=..+.+.+-...-.+.+
T Consensus 157 ~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 157 LAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred HHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 7766543 3222222222222344466666554332211 223333333 3333333323333333333322222
Q ss_pred -----cccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 260 -----LISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 260 -----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..||--+...+...|+.++|..+|+-....
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 257778888899999999999999877654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.7 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.134 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
..+...+...|+++.|...+++.+++.|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444445555555555555444444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=86.38 E-value=29 Score=32.91 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPD-NEHNFELLIKIYG-NAGRLDDVERVERMLVD 521 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 521 (526)
.+..+.+.|-+..|.++.+-++.++|. |+...-..++.|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345678899999999999999999998 8877777777776 67778777777776543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.69 E-value=3.9 Score=34.71 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
|.+.-+..+.+.+...+|+....+.++.+|.. ..-..++..++-.|++++|...++-+-++.|.+.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455677788899999999998888888854 6777888899999999999999999888888744
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.31 E-value=0.79 Score=43.56 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=61.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCC
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPRVEHY-ACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGN 474 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 474 (526)
+..+...+.++.|..++.++.+ +.||-..| ..=..++.+.+++..|+.=..+++...|.. ..|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 3444556677777777777764 46654333 223366777777777777666777767654 444444556666677
Q ss_pred hHHHHHHHHHHHccCCCCcc
Q 009782 475 VCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~ 494 (526)
+.+|...|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 77777777777777777666
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.21 E-value=20 Score=29.50 Aligned_cols=135 Identities=13% Similarity=0.198 Sum_probs=81.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHHhh
Q 009782 375 LIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG--LIDEAYSMIVEK 452 (526)
Q Consensus 375 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 452 (526)
.++++-+.+.++.|+...+..+++.+.+.|......++++. ++-+|.......+-.+.... -..-|++++ +.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML-kR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDML-KR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHH-HH
Confidence 45666677788999999999999999999987665555432 56666555444333222211 123344444 33
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 453 MEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 453 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++ ..+..++..+...|++-+|.++.+.....+.- .-..+..+-.+.++..--..+++-..+++
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 33 13455667788899999998888776443322 13445566666666665555555554444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.15 E-value=30 Score=31.53 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=8.7
Q ss_pred CChhHHHHHHHHHHhcCC
Q 009782 124 KNKGISSKLLRLYATFGL 141 (526)
Q Consensus 124 ~~~~~~~~ll~~~~~~g~ 141 (526)
+|..+....+..+...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 444444445555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.65 E-value=36 Score=32.09 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=42.7
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCC---------CChh-HHHHHHHhcCCchHHHHHHHHHHHC
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---------KDVV-SWNSIIHAHSKDHEALIYFEQMERD 384 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~li~~~~~~~~a~~~~~~m~~~ 384 (526)
....++..+.+.+.+.|+++.|...+..+.+ |.+. .+.-++-.-|+..+|+..+++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677888999999999999988887765 1221 2344555567778888888887763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.24 E-value=6.9 Score=38.50 Aligned_cols=135 Identities=14% Similarity=0.050 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--HHH
Q 009782 387 LPDHLTFVSLLSACAHL--GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--VVW 462 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 462 (526)
-|+..+..+++.-...- ...+-+..++-.|. + .+.|--...+...-.+...|+...|...+..++...|.. ...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 45665555555443322 12233444444443 2 334433333322222345799999999998888888854 666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..|.....+.|-.-.|..++.+.+.+.-..+..+..++++|....+.+.|++.|++..+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 7788888888988899999999999887778889999999999999999999999987764
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.15 E-value=2.9 Score=30.24 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=46.0
Q ss_pred hhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHHHHHhcCChHHH
Q 009782 451 EKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 451 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A 512 (526)
+.+..+|+. ...-.+...+...|++++|++.+-.+++..++ +..+-..|+.++...|.-+..
T Consensus 13 ~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 13 AALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 555567754 77778888999999999999999999987755 577788999999998886543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.15 E-value=39 Score=35.90 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=23.6
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 009782 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK 241 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 241 (526)
+......+.+...++.+....-.++....+.++..|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44555666667777776665555566666666666654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=84.13 E-value=18 Score=28.28 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=46.4
Q ss_pred CCchhHHHHHHHHHHhcCChH---HHHHHHHhhcC-CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 423 SPRVEHYACMVNLYGRAGLID---EAYSMIVEKME-FEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.++..+--.+..++.+..+.+ +-+.++++..+ -.|+. ....-|.-++.+.++++.++++.+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555556667776665544 34556655553 34433 444556667778888888888888888888887663
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.60 E-value=14 Score=32.15 Aligned_cols=50 Identities=6% Similarity=-0.045 Sum_probs=25.0
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
...|++-++++.-..++...|.|..+|..-+++-...=+.++|..=|..+
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33445555555555555555555555555555544444444444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.45 E-value=6.7 Score=35.37 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC----cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc
Q 009782 120 NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF----AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF 195 (526)
Q Consensus 120 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 195 (526)
.|.+....+...++..-....+++.+...+-++....-- ..+-.+.+..+. .=+.++++.++..=.+-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 344555555555555555566777777777666544210 022223333333 345668888888878888888999
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 009782 196 TFPRVLKACAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 196 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 224 (526)
+++.+|..+.+.+++..|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999998888888888888877776554
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.24 E-value=4.4 Score=28.09 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=21.7
Q ss_pred hcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 009782 438 RAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
...+.++|+..|...+...+++ .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444333322 4445555555555555555444
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.02 E-value=5.3 Score=35.97 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=67.1
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------CChhHHHHHHHhc--CCchHHHHHHHHHHHCCCCCCHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------KDVVSWNSIIHAH--SKDHEALIYFEQMERDGVLPDHLT 392 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~--~~~~~a~~~~~~m~~~~~~p~~~~ 392 (526)
|......+...++..-....+++.+...+-++.. ++...+. .+..+ -+.++++.++..=++-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 4444455555566666666777777777665553 2222221 22222 233578888888888999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
++.+++.+.+.+++..|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999888777665
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=82.68 E-value=9.8 Score=32.91 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 495 NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
....++....+.|++++|.+.|.++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445556666666666666666666543
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=82.31 E-value=18 Score=26.87 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
..++|..+.+++...+. -...+--.-+..+.+.|++++|+..=.....||...|-+|-.. .|-.+++...+.++..+|
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 45667777777766654 2333334456678899999999666666666888888887776 566677777777665544
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.99 E-value=54 Score=32.14 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=106.3
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhc--CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAH--SKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
|....-+++..+....++.-.+.+..+|.. .+-..|-.++.+| ...++-..+|+++.+..+ |......-+..+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en~n~~l~~lWer~ve~df--nDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKENGNEQLYSLWERLVEYDF--NDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCchhhHHHHHHHHHhcc--hhHHHHHHHHHHH
Confidence 344445566666666666666666666553 3444555555553 233566777777777433 3333333333344
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHHhcCChHHHHHHH---HhhcCCCCCHHHHHHHHHHHHhc
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPR------VEHYACMVNLYGRAGLIDEAYSMI---VEKMEFEASPVVWGALLYACYLH 472 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~p~~~~~~~l~~~~~~~ 472 (526)
..++...+..+|.++..+ +-|. ...|..|...- ..+.+....+. ....|..--...+.-+-.-|...
T Consensus 143 Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 143 EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 447788888888888764 3331 23444444322 23455555554 22334444556667677778889
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
.++.+|++++..+++.+..|..+...++.-+..
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 999999999999999988888888888777654
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.77 E-value=4.3 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC
Q 009782 265 SMLTGYIHHGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (526)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888887654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.30 E-value=17 Score=30.78 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=49.6
Q ss_pred HHhcCChHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCCh
Q 009782 436 YGRAGLIDEAYSMIVEKMEFEA--SPVVWGALLYACYLHGNVCMGETAAQKLFELEPD----NEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 509 (526)
..+.|+ ++|.+.|.+.-+ .| +.......+..|....|.+++++++-+++++.++ |+..+..|+.+|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEG-TPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 566666634433 33 2233444444555577888888888888885432 567788889999988888
Q ss_pred HHHH
Q 009782 510 DDVE 513 (526)
Q Consensus 510 ~~A~ 513 (526)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8873
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.62 E-value=44 Score=30.19 Aligned_cols=115 Identities=10% Similarity=0.002 Sum_probs=69.2
Q ss_pred ChhHHHHHHhccccCC---CCcccHHHHHHHHHh-cC-ChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHhccCChHHHH
Q 009782 141 LIDEAHQVFDQMSNRT---AFAFPWNSLISGYAE-LG-EYEDAIALYFQMEEE-GVEPDQFTFPRVLKACAGLGLIRVGE 214 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~---~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~ 214 (526)
.+.+|+++|+...... .+..+-..++..... .+ ....-.++.+-+... |-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 4556666666332210 111344445555444 11 222223333333322 45677777778888888888888888
Q ss_pred HHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 215 KVHLDAVRF-GFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 215 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
++++..... +..-|...|..+|+.....||..-..++.++-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 887776655 55667778888888888888887777777543
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.48 E-value=4.3 Score=36.40 Aligned_cols=80 Identities=6% Similarity=0.043 Sum_probs=54.5
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 422 ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGA-LLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 422 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+..|+..|...+....+.|.+.+.-.+|.+.+...|.. ..|-. .-.-+...++++.+..++.+.++++|+++..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 44466666666665566677777777777777777744 55533 33446667888888888888888888888776654
Q ss_pred HH
Q 009782 500 IK 501 (526)
Q Consensus 500 ~~ 501 (526)
.+
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.31 E-value=35 Score=29.74 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhcCChHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLT-FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE-HYACMVNLYGRAGLIDEAYSM 448 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 448 (526)
++.|...|.+.+. +.|+..+ |..-+-++.+..+++.+.+--.... .+.||.. ...-+...+.....+++|+..
T Consensus 26 y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 26 YDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3556665555544 5666643 3444555556666666666555554 3455432 333444555566666666666
Q ss_pred HHhh
Q 009782 449 IVEK 452 (526)
Q Consensus 449 ~~~~ 452 (526)
+.++
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 6444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.16 E-value=11 Score=32.20 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLY 467 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~ 467 (526)
|.+.-++.+.+.+.+++++...+.-++. -+.|...-..+++.|+-.|+|++|..-++-.-...|+ ..+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455677788889999999998887763 3446777788999999999999999888333344553 366776665
Q ss_pred H
Q 009782 468 A 468 (526)
Q Consensus 468 ~ 468 (526)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.09 E-value=2.9 Score=22.19 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
.|..+...+...|++++|...+.+.+...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345566666677777777777766555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 5e-11
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 185 MEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244
+ P + R+L+ G + V + + L A
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 245 IVKARTVFDRIGNK-------DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297
+ A + + L YN+++ G+ G E + + G PD ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 298 ISSILA 303
++ L
Sbjct: 203 YAAALQ 208
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 1e-09
Identities = 27/238 (11%), Positives = 74/238 (31%), Gaps = 13/238 (5%)
Query: 23 KNKRSRKQRRQKQQQIS-RNRITTFSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLES 81
++ ++ ++ + Q++ + ++ S K+ L + K L+ +
Sbjct: 29 ILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPE 88
Query: 82 SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141
S E A LL+ +++ L + +
Sbjct: 89 SPWE------EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 142 IDEAHQVFDQMSNRTAFAFP-----WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFT 196
+ AH + + +N+++ G+A G +++ + + F +++ G+ PD +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 197 FPRVLKACAGLG-LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFD 253
+ L+ E+ + G L+ + + V
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 2e-08
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 12/126 (9%)
Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQK-------DVVSWNSIIHAHSKD---HEALIYFEQ 380
+ +L A L + + +N+++ ++ E +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 381 MERDGVLPDHLTFVSLLSACAHLG-SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA 439
++ G+ PD L++ + L ER M + G+ + A +++ RA
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRA 249
Query: 440 GLIDEA 445
++
Sbjct: 250 TVLKAV 255
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 1e-07
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYAC 431
H L+ + L + +++ A G+ K + ++ + G++P + YA
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205
Query: 432 MVNLYGRAGLIDEAYSMIVEKME 454
+ GR +E+M
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMS 228
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 2e-07
Identities = 29/212 (13%), Positives = 59/212 (27%), Gaps = 12/212 (5%)
Query: 118 PTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWN----SLISGYAELG 173
+ ++ + RL L+ + + R A PW L+
Sbjct: 47 KLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKL 106
Query: 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKV---HLDAVRFGFGFDGF 230
+ A Q + + Q K C + + + H +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 231 VLNALVDMYAKCGDIVKARTVFDRIGNK----DLISYNSMLTGYIHHGLLVEAF-DIFRG 285
+ NA++ +A+ G + V + + DL+SY + L
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 286 MILNGFDPDPVAISSILANASLLRIGAQVHGW 317
M G + + +L+ + VH
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 6e-05
Identities = 20/159 (12%), Positives = 42/159 (26%), Gaps = 11/159 (6%)
Query: 370 KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHY 429
A + + P LL S+ V + + +S + +
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH-SQAQLSGQQQRL 130
Query: 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGE-TAAQKLFE- 487
+ A+ ++V + +Y + G G +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 488 -----LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521
L PD ++ ++ G + D +ER L
Sbjct: 191 VKDAGLTPD-LLSYAAALQCMGRQDQ--DAGTIERCLEQ 226
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 9e-04
Identities = 63/425 (14%), Positives = 118/425 (27%), Gaps = 121/425 (28%)
Query: 38 ISRNR-ITTFSSYPKSSPTPLLTNQKAFPKTK-----LQALDSIIQDLESSVQNGITVQT 91
+R + +T F S ++ L + + L+ LD QDL V +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 92 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151
A + + N + I S L L E ++FD+
Sbjct: 331 SIIAESIR--------DGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDR 377
Query: 152 MSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTFPRVLKACAGLGLI 210
+S FP ++ I ++L F + + V V+ L+
Sbjct: 378 LS-----VFPPSAHIP--------TILLSLIWFDVIKSDVM-------VVVNKLHKYSLV 417
Query: 211 RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGY 270
EK L ++ K + Y
Sbjct: 418 ---EK---QPKESTISIPSIYL----ELKVKLENE------------------------Y 443
Query: 271 IHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIA 330
H +V+ ++I + + P L IG H + L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPY------LDQYFYSHIG--HHLKNIEHPERMTL--- 492
Query: 331 NSLIVVYSKDGKLDQACWLFDHMPQK---DVVSWNSIIHAHSKDHEALIYFEQMERDGVL 387
+V+ LD F + QK D +WN+ + + Y + +
Sbjct: 493 --FRMVF-----LD-----FRFLEQKIRHDSTAWNASGSILNTLQQLKFY-----KPYIC 535
Query: 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL---YGRAGLIDE 444
+ + L++A K+ E L S Y ++ + + +E
Sbjct: 536 DNDPKYERLVNAILDF-LPKIEENLI--------CSK----YTDLLRIALMAEDEAIFEE 582
Query: 445 AYSMI 449
A+ +
Sbjct: 583 AHKQV 587
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 526 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.97 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.92 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.85 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.85 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.69 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.69 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.69 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.66 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.6 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.57 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.38 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.38 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.35 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.24 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.21 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.03 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.82 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.78 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.75 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.64 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.52 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.5 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.44 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.31 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.25 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.09 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.74 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.41 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.36 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.28 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.13 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.74 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.61 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.33 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.26 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.27 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.16 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.68 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.66 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.07 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.35 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 91.58 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.28 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 90.62 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.55 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.29 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.03 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.96 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.85 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.83 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.45 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 89.04 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.32 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 88.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.24 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.83 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.97 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.11 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 84.27 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.06 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 82.1 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.94 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 80.72 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.13 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=328.92 Aligned_cols=427 Identities=9% Similarity=-0.021 Sum_probs=349.2
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH
Q 009782 89 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG 168 (526)
Q Consensus 89 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 168 (526)
++...|+.++..+.+.|++++|.++|+.+.+. .|+..++..++.+|.+.|++++|..+|+.+....+++.+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 46777788888888888888888888877753 4566777778888888888888888888775544555777888888
Q ss_pred HHhcCChHHHHHHHHHHHHc---------------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh---
Q 009782 169 YAELGEYEDAIALYFQMEEE---------------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGF--- 230 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--- 230 (526)
|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHH
Confidence 88888888888888742211 1233456778888888888888888888888776542 1222
Q ss_pred -----------------------------------HHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhC
Q 009782 231 -----------------------------------VLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHH 273 (526)
Q Consensus 231 -----------------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 273 (526)
+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 233446667788999999999999988 7899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHh
Q 009782 274 GLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLF 350 (526)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 350 (526)
|++++|.++|+++.+.+. .+..++..++..+ |+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999997652 2444555555554 99999999999998654 457889999999999999999999999
Q ss_pred ccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 009782 351 DHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP 424 (526)
Q Consensus 351 ~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 424 (526)
+++.+ .+..+|+.++.. .|+.++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+. .+.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 98763 457788888877 588999999999999853 336789999999999999999999999999875 345
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcC------CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKME------FEAS--PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
+..+|..++..|.+.|++++|.++|.+++. ..|+ ..+|..++.+|.+.|++++|++.++++++..|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 789999999999999999999999966654 3777 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
..++.+|.+.|++++|.+.++++.+..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=316.49 Aligned_cols=439 Identities=10% Similarity=-0.028 Sum_probs=376.7
Q ss_pred CCccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 55 TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
+...++.++..+.+.|++++|+.++++|.. ..|+..++..++.+|.+.|++++|.++|+.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 334566777777888999999999999985 4568889999999999999999999999988754 688899999999
Q ss_pred HHHhcCChhHHHHHHhccccCC-----------------CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-ch
Q 009782 135 LYATFGLIDEAHQVFDQMSNRT-----------------AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-FT 196 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t 196 (526)
+|.+.|++++|.++|+++.... .++.+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 236 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEA 236 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHH
Confidence 9999999999999999654332 134789999999999999999999999998864 433 23
Q ss_pred HHH--------------------------------------HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 197 FPR--------------------------------------VLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 197 ~~~--------------------------------------ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
+.. ++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222 244566788999999999998766 5889999999999
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHH
Q 009782 239 YAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGA 312 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~ 312 (526)
|.+.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|.++++++.+.. ..+..++..+...+ |++++|.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999998863 477899999999999999999999999998653 34566666665555 9999999
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCC
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGV 386 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~ 386 (526)
.+++.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|..+..+ .|+.++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998864 34678999999999999999999999998763 466788887776 588999999999999853
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCc--hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHH
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GISPR--VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPV 460 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 460 (526)
+.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.+.+.+...| +..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 3367899999999999999999999999998753 55777 78999999999999999999999988887778 569
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
+|..++..|.+.|++++|.+.+++++++.|+++.++..++.+|.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-28 Score=230.92 Aligned_cols=371 Identities=14% Similarity=0.139 Sum_probs=260.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
+.|++++|++.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|++++|+.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456667777766666655322 44455555556666667777776666666543 4556666666677777777777777
Q ss_pred HHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 148 VFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
.|+++...+|+. .+|..+..++.+.|++++|.+.|+++.+. .|+.. .+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 776665555432 45666666667777777777777666654 23333 44555556666667777777666666553
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 009782 226 GFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSIL 302 (526)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 302 (526)
+.+..+|..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..... |
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p--------- 234 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--P--------- 234 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--T---------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c---------
Confidence 33455666666666666666666666665543 233455566666666666666666666555431 1
Q ss_pred HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHH
Q 009782 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382 (526)
Q Consensus 303 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~ 382 (526)
.+..++..+..+|.+.|++++|...|++ +.
T Consensus 235 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------------------al 264 (388)
T 1w3b_A 235 ----------------------NHAVVHGNLACVYYEQGLIDLAIDTYRR----------------------------AI 264 (388)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------------HH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------HH
Confidence 1344556677777777777777666654 33
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HH
Q 009782 383 RDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PV 460 (526)
Q Consensus 383 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 460 (526)
+ ..| +..++..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.+.+.+...|+ ..
T Consensus 265 ~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 265 E--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp H--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred h--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 4 234 4568899999999999999999999999875 4567889999999999999999999999889988886 48
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
++..+...+.+.|++++|...+++++++.|+++.+|..++.+|...|+
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 899999999999999999999999999999999999999999988774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=247.73 Aligned_cols=212 Identities=13% Similarity=0.158 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 176 EDAIALYFQMEEEGVEPDQF-TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 176 ~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
..+..+.+++.+.+..+... .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34555666777666655443 57778888888888888888888888888888888888888888776643211
Q ss_pred cCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHh
Q 009782 255 IGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIAN 331 (526)
Q Consensus 255 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 331 (526)
.+.+..+.|.++|++|...|+.||..||+++|.+| |++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 12234455666666666666666666666666655 56666666666666666666666677
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 411 (526)
++|.+|++.|++++|.++|+ +|.+.|+.||..||++||.+|++.|++++|.+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~----------------------------~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDA----------------------------HMVESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------------------------HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH----------------------------HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 77778887777766555544 56677788888888888888888888888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHh
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGR 438 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~ 438 (526)
++++|.+. |..|+..||+.++..|..
T Consensus 197 ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 197 TLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 88888777 888888888888777765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=250.01 Aligned_cols=208 Identities=12% Similarity=0.029 Sum_probs=171.0
Q ss_pred HHHHHHHHHhhCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 74 SIIQDLESSVQNGITVQTE-TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 74 ~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
.+..+.+.+.+.+....+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455566777777666554 58889999999999999999999999999999999999999999887754321
Q ss_pred ccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 153 SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 153 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
.+.+.++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 123456889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 009782 233 NALVDMYAKCGDIVKARTVFDRIG----NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA 305 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 305 (526)
+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 999999999999999999999886 4788999999999999999999999999999999999999998888776
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-27 Score=225.59 Aligned_cols=357 Identities=14% Similarity=0.118 Sum_probs=297.1
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChH
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYE 176 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 176 (526)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++.....+|. +.+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455678899999999999888764 556677777888888999999999999888776654 467999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009782 177 DAIALYFQMEEEGVEPDQ-FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRI 255 (526)
Q Consensus 177 ~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 255 (526)
+|++.|+++.+. .|+. .+|..+..++...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999875 3544 478889999999999999999999988874 345567777888888899999999999877
Q ss_pred CC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhH
Q 009782 256 GN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANS 332 (526)
Q Consensus 256 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 332 (526)
.+ .+..+|..+...+...|++++|...|+++.+.+ |+ +...+..
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~ 208 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN-------------------------------FLDAYIN 208 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-------------------------------cHHHHHH
Confidence 54 345788888889999999999999998887742 22 3344566
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGER 411 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 411 (526)
+...+...|++++|...|++ ... ..| +..++..+...+...|++++|.+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~----------------------------al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLR----------------------------ALS--LSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHH----------------------------HHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH----------------------------HHh--hCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777778877777766653 333 344 46788899999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 412 LFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.++++.+. .+.+..+|..+...+.+.|++++|.+.|.+.+...| +..++..+...+...|++++|...++++++..|
T Consensus 259 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 259 TYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999863 333678899999999999999999999988887777 458899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++..++..++.+|.+.|++++|.+.++++.+..
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-23 Score=206.74 Aligned_cols=425 Identities=10% Similarity=-0.020 Sum_probs=266.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~ 169 (526)
...+......+.+.|++++|.+.|+.+.+.. |+..++..+..++.+.|++++|+..|+++...+|+. .+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3455666677888899999999999888875 678888888899999999999999998887766643 6788888899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCCHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV---DMYAKCGDIV 246 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li---~~~~~~g~~~ 246 (526)
.+.|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-. ..........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999888765 3444455555554443333333333332222221111111000000 0000011111
Q ss_pred HHHHHHhhcCC---------C-CcccHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCCCc-------H-HHHHH
Q 009782 247 KARTVFDRIGN---------K-DLISYNSMLTGYIH---HGLLVEAFDIFRGMIL-----NGFDPD-------P-VAISS 300 (526)
Q Consensus 247 ~A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~~p~-------~-~~~~~ 300 (526)
.+...+..... + +...+......+.. .|++++|...|+++.+ ....|+ . ..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111111 1 12233333333333 5666666666666665 211111 1 11111
Q ss_pred HHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCc
Q 009782 301 ILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKD 371 (526)
Q Consensus 301 ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~ 371 (526)
+...+ |+++.|...++.+.+.... ...+..+..+|...|++++|...++++.+ .+...+..+... .|+.
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 11111 6666666666666665544 66667777778888888888777776654 233344444333 5777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 372 HEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
++|...+++..+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+.+
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777422 23457777888888888888888888888764 233566777888888888888888888866
Q ss_pred hcCCCCCH-------HHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 452 KMEFEASP-------VVWGALLYACYL---HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 452 ~~~~~p~~-------~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.+...|+. ..+..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66544433 277788888888 88888888888888888888888888888888888888888888888765
Q ss_pred CC
Q 009782 522 RG 523 (526)
Q Consensus 522 ~g 523 (526)
.+
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 43
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=197.93 Aligned_cols=348 Identities=11% Similarity=0.034 Sum_probs=220.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISG 168 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~ 168 (526)
+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..++...|++++|...|+++...+|+ +.+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 56777778888888888888888888888764 556778888888888888888888888887766554 3677888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCc----chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEPDQ----FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+.+.|++++|.+.|+++.+. .|+. ..+..+...+.. ..+..+...+.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 88888888888888888764 3433 344444332100 011122333444555
Q ss_pred HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009782 245 IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321 (526)
Q Consensus 245 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 321 (526)
+++|...|+++.+ .+...+..+..+|.+.|++++|.+.|+++.+..
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 207 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------------- 207 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------
Confidence 5555555554432 234455555555555566666666555554421
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
+.+..++..+..+|...|++++|...|+++.+ |+.... ...+..+. ....+..+...
T Consensus 208 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------------~~~~~~~~------~~~~~~~~~~~ 266 (450)
T 2y4t_A 208 --NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC-------------FAHYKQVK------KLNKLIESAEE 266 (450)
T ss_dssp --CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------------HHHHHHHH------HHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH-------------HHHHHHHH------HHHHHHHHHHH
Confidence 11233444555555555555555555554331 111100 00000000 01122334667
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHG 473 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 473 (526)
+...|++++|...|+.+.+. .|+ ...+..++..+.+.|++++|++.+.+.+...| +...|..++.+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 77788888888888888764 343 34677778888888888888888877777667 4577888888888888
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHH------------HHhcC-----ChHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKI------------YGNAG-----RLDDVERVERM 518 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 518 (526)
++++|...+++++++.|+++.++..+..+ |...| +.+++.+.+++
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 88888888888888888888877777743 44444 55566666665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=201.10 Aligned_cols=397 Identities=9% Similarity=-0.013 Sum_probs=272.6
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHH
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEA 145 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 145 (526)
+.+.|++++|+..++.+.+.. |+...+..+..++...|++++|.+.++.+.+.. +.+..++..+..++.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 346789999999999999876 689999999999999999999999999999876 66778999999999999999999
Q ss_pred HHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------------------------------
Q 009782 146 HQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD------------------------------- 193 (526)
Q Consensus 146 ~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------------------------------- 193 (526)
...|+++...+|.. .....++..+........+.+.+..+...+..|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 93 MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 99999987776532 3444455544443333333333322211111111
Q ss_pred -------------cchHHHHHHHHh---ccCChHHHHHHHHHHHH-----hCC--------CCchhHHHHHHHHHHhcCC
Q 009782 194 -------------QFTFPRVLKACA---GLGLIRVGEKVHLDAVR-----FGF--------GFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 194 -------------~~t~~~ll~~~~---~~g~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~~g~ 244 (526)
...+......+. ..|++++|...++++.+ ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 112222222222 25666666666666655 200 1223455555666666666
Q ss_pred HHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhC
Q 009782 245 IVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRG 322 (526)
Q Consensus 245 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 322 (526)
+++|...|+++.+ |+...+..+...+...|++++|...++++....
T Consensus 253 ~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------- 300 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------------------------- 300 (514)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--------------------------------
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--------------------------------
Confidence 6666666655432 224455555666666666666666666655432
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 009782 323 VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSL 396 (526)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 396 (526)
+.+...+..+..+|...|++++|...++++.+ .+...+..+... .|+.++|...++++.+.. +.+...+..+
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 12344556677777777777777777776542 233444444444 466677888888877642 2245688889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHh---cCChHHHHHHHHhhcCCCCC-HHHHHHHHHH
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGR---AGLIDEAYSMIVEKMEFEAS-PVVWGALLYA 468 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 468 (526)
...+...|++++|...++.+.+...-.++ ...+..+...+.. .|++++|.+.+.+.+...|+ ..++..+...
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999999875222222 3388999999999 99999999999888877785 5788899999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+...|++++|...+++++++.|+++..+..+
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999988766655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-22 Score=192.69 Aligned_cols=298 Identities=11% Similarity=0.057 Sum_probs=201.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+...+..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344445555555555555555555554431 2234444445555555555555555555555443 22344444555555
Q ss_pred HhcCCHHHHHHHHhhcCCCCc------ccHHH------------HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDL------ISYNS------------MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSI 301 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~------~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 301 (526)
.+.|++++|.+.|+++.+.+. ..+.. +...+...|++++|...|+++.+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------- 173 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----------- 173 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 555555555555554433211 22222 2344666677777777777666531
Q ss_pred HHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHH
Q 009782 302 LANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQM 381 (526)
Q Consensus 302 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m 381 (526)
+.+..++..+..+|.+.|++++|...|+++.
T Consensus 174 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------- 204 (450)
T 2y4t_A 174 ----------------------VWDAELRELRAECFIKEGEPRKAISDLKAAS--------------------------- 204 (450)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH---------------------------
T ss_pred ----------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------------
Confidence 2245556777888888888888777776433
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHH------------HHHHHhcCChHHHHHHH
Q 009782 382 ERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM------------VNLYGRAGLIDEAYSMI 449 (526)
Q Consensus 382 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~ 449 (526)
+. .+.+..++..+...+...|++++|...++++.+. .+.+...+..+ +..+.+.|++++|.+.|
T Consensus 205 -~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 205 -KL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp -HH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 1235678889999999999999999999999864 22244445444 88999999999999999
Q ss_pred HhhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 450 VEKMEFEAS-----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 450 ~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+.+...|+ ...+..+...+.+.|++++|+..+++++++.|+++.+|..++.+|...|++++|.+.++++.+..
T Consensus 281 ~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 888887786 34788889999999999999999999999999999999999999999999999999999998754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-21 Score=193.07 Aligned_cols=419 Identities=11% Similarity=0.013 Sum_probs=284.5
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~ 169 (526)
...+..+...+.+.|++++|.+.|+.+.+.. +.+...+..+..+|.+.|++++|++.|+++...+|+ +.+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4566777778888999999999999998875 567888889999999999999999999988776664 36788888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFG--FGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
...|++++|+..|+.+. ..|+.. ...+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS---LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHh---cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996432 223322 122334444555677888887775431 01111112233444556666666
Q ss_pred HHHHHhhcCCCCcc---cHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCcHH--------HHHHHHHH---h
Q 009782 248 ARTVFDRIGNKDLI---SYNSMLTGYIH--------HGLLVEAFDIFRGMILNGFDPDPV--------AISSILAN---A 305 (526)
Q Consensus 248 A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~--------~~~~ll~~---~ 305 (526)
+...+......+.. ....+...+.. .|++++|..+++++.+.. |+.. .+..+-.. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhc
Confidence 66666655554432 22222222222 146777777777776643 3211 11111111 1
Q ss_pred hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHH
Q 009782 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFE 379 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~ 379 (526)
|+++.|...++.+.+... +...+..+...|...|++++|...++++.+ .+...|..+... .+++++|...++
T Consensus 257 ~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 677777777777777643 366777777888888888888888877653 233444444433 577788888888
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC
Q 009782 380 QMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 380 ~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 458 (526)
+..+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 88774 33 3467888888889999999999999998875 3445778888899999999999999999666644332
Q ss_pred H-------HHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 459 P-------VVWGALLYACYLH----------GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 459 ~-------~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
. ..+......+... |++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2 2244445667777 9999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 009782 522 RG 523 (526)
Q Consensus 522 ~g 523 (526)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-20 Score=188.13 Aligned_cols=422 Identities=8% Similarity=-0.021 Sum_probs=289.9
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 65 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.+.+.|++++|+..++.+.+..+. ++..+..+..++.+.|++++|.+.++.+.+.. +.+..++..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 345778899999999999987644 78899999999999999999999999999876 6678899999999999999999
Q ss_pred HHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 009782 145 AHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR 222 (526)
Q Consensus 145 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 222 (526)
|...|+.+ ...| ...+..+..+...+....|...++++.... ..+........+..+....+.+.+...+.....
T Consensus 112 A~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 112 AMFDLSVL-SLNG--DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHHH-hcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99999744 4444 223334555666666788999998886531 011111112233334444444444333222111
Q ss_pred hCCCCch-hHHHHHHHHHHh--------cCCHHHHHHHHhhcCCCCc----------ccHHHHHHHHHhCCChHHHHHHH
Q 009782 223 FGFGFDG-FVLNALVDMYAK--------CGDIVKARTVFDRIGNKDL----------ISYNSMLTGYIHHGLLVEAFDIF 283 (526)
Q Consensus 223 ~g~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~~~ 283 (526)
..+.. .....+...+.. .|++++|..+|+++.+.++ .++..+...+...|++++|...+
T Consensus 189 --~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 189 --YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp --SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11111 122222222221 2467888888877765322 24566667778888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--C-C
Q 009782 284 RGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-D 357 (526)
Q Consensus 284 ~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 357 (526)
++..+. .|+...+..+-..+ |+++.|...++.+.+... .+..++..+..++...|++++|...|+++.+ | +
T Consensus 267 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 267 QESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 888775 34544444444443 788888888888877653 3567788888999999999999999887764 2 3
Q ss_pred hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHH
Q 009782 358 VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYA 430 (526)
Q Consensus 358 ~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~ 430 (526)
...+..+... .|+.++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+...-.+ ....+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 3444444444 688899999999988752 22456888899999999999999999999876521111 122344
Q ss_pred HHHHHHHhc----------CChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHH
Q 009782 431 CMVNLYGRA----------GLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 431 ~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
.+...+.+. |++++|...+.+.+...|+ ...+..+...+...|++++|.+.+++++++.|.+.....
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 556777777 9999999999888888885 588899999999999999999999999999999776544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-19 Score=168.24 Aligned_cols=339 Identities=10% Similarity=0.009 Sum_probs=218.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISG 168 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~ 168 (526)
++..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+...|++++|...|+++...+|+ +..|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34556666677777788888888888777754 455677777777777888888888888777665553 3567777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC----CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 169 YAELGEYEDAIALYFQMEEEGVEP----DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 169 ~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
+...|++++|...|++..+. .| +...+..+.... . ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccC
Confidence 77778888888888777753 34 222222221000 0 0011223445555666
Q ss_pred HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009782 245 IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321 (526)
Q Consensus 245 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 321 (526)
+++|.+.|+++.+ .+...+..+...+...|++++|...+++..+.. |+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------------- 186 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SD--------------------------- 186 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SC---------------------------
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------------------
Confidence 6666666655432 234455566666666666666666666665531 11
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 322 GVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
+...+..+...|...|++++|...|++..+. ......+...+..+. .......+...+.
T Consensus 187 ----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----------~~~~~~~~~~~~~~~------~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 187 ----NTEAFYKISTLYYQLGDHELSLSEVRECLKL-----------DQDHKRCFAHYKQVK------KLNKLIESAEELI 245 (359)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CccchHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 2333445556666666666666665543310 000111111111111 1122334466788
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCc-h----hHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCh
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPR-V----EHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNV 475 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 475 (526)
..|++++|...++++.+. .|+ . ..+..+...+...|++++|.+.+.+.+...| +..++..+...+...|++
T Consensus 246 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 246 RDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH
Confidence 899999999999999875 233 2 3355678899999999999999988888788 558899999999999999
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
++|...+++++++.|++..++..+..++...+
T Consensus 323 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999998888888876544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-19 Score=166.16 Aligned_cols=313 Identities=11% Similarity=0.017 Sum_probs=196.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 009782 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG 206 (526)
Q Consensus 128 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 206 (526)
.+..+...+...|++++|...|+++...+|+ +.+|..+...+...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 3444444444455555555555444433332 2344444444444455555555544444431 1122344444444444
Q ss_pred cCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFG--FDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (526)
.|++++|...++.+.+.... .+...+..+...+. + ..+..+...+...|++++|.+.++
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~------------~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M------------QRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H------------HHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444433100 11111111111110 0 012223556677777777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSI 364 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 364 (526)
++.+.. +.+...+..+..++...|++++|...++++.
T Consensus 145 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---------- 181 (359)
T 3ieg_A 145 KILEVC---------------------------------VWDAELRELRAECFIKEGEPRKAISDLKAAS---------- 181 (359)
T ss_dssp HHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHhC---------------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH----------
Confidence 766532 1234455667778888888888777776543
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHH------------HH
Q 009782 365 IHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA------------CM 432 (526)
Q Consensus 365 i~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~------------~l 432 (526)
+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+. .+
T Consensus 182 ------------------~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 182 ------------------KL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp ------------------TT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHH
Confidence 21 1235668888999999999999999999999875 222333332 33
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASP-----VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
...+.+.|++++|.+.+.+.+...|+. ..+..+...+...|++++|...++++++..|+++.++..++.+|...|
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 677899999999999998888777764 234557788999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 009782 508 RLDDVERVERMLVDRGL 524 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g~ 524 (526)
++++|.+.++++.+...
T Consensus 321 ~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 321 MYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp CHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999999999987653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-18 Score=159.92 Aligned_cols=287 Identities=12% Similarity=-0.010 Sum_probs=208.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 556666666777777777777777766643 2344455556666677777777777777776654 34556667777777
Q ss_pred HhcC-CHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHH
Q 009782 240 AKCG-DIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVH 315 (526)
Q Consensus 240 ~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~ 315 (526)
...| ++++|...|++..+ .+...|..+...+...|++++|...+++..+.. |
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~---------------------- 156 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--K---------------------- 156 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--T----------------------
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--c----------------------
Confidence 7777 77777777776653 244567777778888888888888887776642 1
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 009782 316 GWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVS 395 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 395 (526)
.+...+..+...|...|++++|...++++.+ . .+.+...+..
T Consensus 157 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------------------~-~~~~~~~~~~ 198 (330)
T 3hym_B 157 ---------GCHLPMLYIGLEYGLTNNSKLAERFFSQALS----------------------------I-APEDPFVMHE 198 (330)
T ss_dssp ---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------------------------T-CTTCHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------------------------h-CCCChHHHHH
Confidence 1233344566777778887777777765432 1 1224567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYG-------ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+...|++++|...++++.+... .+.+...+..+...|...|++++|.+.+.+.+...|+ ...+..+..
T Consensus 199 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 278 (330)
T 3hym_B 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY 278 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 88888889999999999988876421 1334678889999999999999999999888877775 488889999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH-HhcCChH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY-GNAGRLD 510 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 510 (526)
.+...|++++|...+++++++.|+++.++..++.++ ...|+.+
T Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999988 4556544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-16 Score=157.37 Aligned_cols=406 Identities=10% Similarity=0.035 Sum_probs=259.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 169 (526)
+...+..++.. .+.|+++.|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++.....|++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 66667777763 56777777777777777653 55666777777777777777777777777777666555565555432
Q ss_pred -HhcCChHHHHH----HHHHHHHc-CCCCC-cchHHHHHHHHhc---------cCChHHHHHHHHHHHHhCCCCchhHHH
Q 009782 170 -AELGEYEDAIA----LYFQMEEE-GVEPD-QFTFPRVLKACAG---------LGLIRVGEKVHLDAVRFGFGFDGFVLN 233 (526)
Q Consensus 170 -~~~~~~~~a~~----~~~~m~~~-~~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~~~~~ 233 (526)
...|+.+.|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|+...+.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34566665554 55555432 44333 3345555544433 566777777777666521111112222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH------HcC---CCCcH--------H
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI------LNG---FDPDP--------V 296 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~~---~~p~~--------~ 296 (526)
.........|. ..+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 22211100110 01111111 02234555655555422 111 23331 2
Q ss_pred HHHHHHHHh-h------h----hHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh-------cCChH-------HHHHHhc
Q 009782 297 AISSILANA-S------L----LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK-------DGKLD-------QACWLFD 351 (526)
Q Consensus 297 ~~~~ll~~~-~------~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~ 351 (526)
.+...+.-. + + .+.+..++++.+... +.++..|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 222222111 1 1 135566777777653 3467788888888775 68887 8999998
Q ss_pred cCCC---CC-hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 009782 352 HMPQ---KD-VVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDH--LTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422 (526)
Q Consensus 352 ~~~~---~~-~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 422 (526)
+..+ |+ ...|..+... .|+.++|..+|++..+ +.|+. ..|..++..+.+.|++++|.++|+++.+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 8764 43 4455444443 6889999999999998 45652 47888888888999999999999999853
Q ss_pred CC-chhHHHHHHHH-HHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc----h
Q 009782 423 SP-RVEHYACMVNL-YGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH----N 495 (526)
Q Consensus 423 ~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~ 495 (526)
.| +...|...+.. +...|+.++|..+|.+.+...|+ +..|..++..+.+.|+.++|..+|++++...|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 34 33333332222 34689999999999888888885 588899999999999999999999999998776655 7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 496 FELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
|...+......|+.+.+.++.+++.+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888999999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-18 Score=157.87 Aligned_cols=269 Identities=10% Similarity=-0.026 Sum_probs=215.0
Q ss_pred CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHH
Q 009782 190 VEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSM 266 (526)
Q Consensus 190 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 266 (526)
.+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|...++++.+ .+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 45566777788888888899999999999888765 44556666777888888899988888887754 356678888
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 267 LTGYIHHG-LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 267 i~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
...+...| ++++|...|++..+.. | .+...+..+..++...|++++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~-------------------------------~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--K-------------------------------TYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--T-------------------------------TCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--C-------------------------------ccHHHHHHHHHHHHHccCHHH
Confidence 88888888 8888888888877642 2 134456677788888888888
Q ss_pred HHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR 425 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 425 (526)
|...++++. +.. +.+...+..+...+...|++++|.+.++++.+. .+.+
T Consensus 144 A~~~~~~a~----------------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~ 192 (330)
T 3hym_B 144 AMAAYFTAA----------------------------QLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APED 192 (330)
T ss_dssp HHHHHHHHH----------------------------HHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHH----------------------------Hhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCC
Confidence 877776433 211 123456777888999999999999999999863 3446
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC---------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE---------A-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
...+..+...+...|++++|...+.+.+... | ...++..+...+...|++++|+..++++++..|++..+
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 272 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHH
Confidence 7889999999999999999999997766432 3 34789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 496 FELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+..++.+|.+.|++++|.+.++++.+..
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-18 Score=163.39 Aligned_cols=295 Identities=11% Similarity=-0.045 Sum_probs=196.2
Q ss_pred cCChhHHHH-HHhccccCCC-----CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHH
Q 009782 139 FGLIDEAHQ-VFDQMSNRTA-----FAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212 (526)
Q Consensus 139 ~g~~~~a~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 212 (526)
.|++++|.+ .|++.....+ +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 467777777 7775543322 23557777778888888888888888877653 3345567777777777777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDL---ISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
|...++.+.+.. +.+..++..+...|...|++++|.+.|+++...+. ..+..+... ...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-----------------AGG 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-----------------hhh
Confidence 777777777664 33555666666666666666666666655432111 111000000 000
Q ss_pred CCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcC
Q 009782 290 GFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHS 369 (526)
Q Consensus 290 ~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 369 (526)
. . ....+..+...+ ..|++++|...|+
T Consensus 179 -~--------------------------------~-~~~~~~~~~~~~-~~~~~~~A~~~~~------------------ 205 (368)
T 1fch_A 179 -A--------------------------------G-LGPSKRILGSLL-SDSLFLEVKELFL------------------ 205 (368)
T ss_dssp -----------------------------------------CTTHHHH-HHHHHHHHHHHHH------------------
T ss_pred -h--------------------------------c-ccHHHHHHHHHh-hcccHHHHHHHHH------------------
Confidence 0 0 000011111222 4555555555444
Q ss_pred CchHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 009782 370 KDHEALIYFEQMERDGVLP---DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 370 ~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 446 (526)
++.+ ..| +..++..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.
T Consensus 206 ----------~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 206 ----------AAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp ----------HHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------HHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3333 223 4678888899999999999999999998874 3446788999999999999999999
Q ss_pred HHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------cchHHHHHHHHHhcCChHHHHH
Q 009782 447 SMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN-----------EHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 447 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
+.+.+.+...|+ ...+..+...+.+.|++++|...+++++++.|++ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999888887775 5888999999999999999999999999988877 7889999999999999999998
Q ss_pred HHHHH
Q 009782 515 VERML 519 (526)
Q Consensus 515 ~~~~m 519 (526)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-15 Score=150.38 Aligned_cols=360 Identities=12% Similarity=0.037 Sum_probs=245.2
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cCChhHHHH
Q 009782 76 IQDLESSVQNGITVQTETFASLLETCYQ----LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FGLIDEAHQ 147 (526)
Q Consensus 76 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~ 147 (526)
+..++...+.| ++..+..+-..+.. .+++++|.+.|+...+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455554444 66777777777776 788888888888887764 56677778888877 788888888
Q ss_pred HHhccccCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCChHHHHHHHHH
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLD 219 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~ 219 (526)
.|++..+.+ ++..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.|+.
T Consensus 101 ~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 101 WYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 888876654 23566677777777 778888888888887765 45566667777765 6788888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 009782 220 AVRFGFGFDGFVLNALVDMYAK----CGDIVKARTVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 290 (526)
..+.| +...+..+...|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|...|++..+.|
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 87765 56667777777777 7888888888876654 345566667777765 677888888887776654
Q ss_pred CCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCChHHHHHHhccCCCC-ChhHHHHHH
Q 009782 291 FDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK----DGKLDQACWLFDHMPQK-DVVSWNSII 365 (526)
Q Consensus 291 ~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li 365 (526)
. ...+..+...|.. .+++++|...|++..+. +...+..+-
T Consensus 254 ~-----------------------------------~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 298 (490)
T 2xm6_A 254 N-----------------------------------SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLA 298 (490)
T ss_dssp C-----------------------------------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C-----------------------------------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 2222333444444 56666666666654432 222222221
Q ss_pred Hh---c-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 366 HA---H-----SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG---SVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 366 ~~---~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
.. . ++.++|..++++..+.| +...+..+...+...| +.++|.+.|++..+. .+...+..|..
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~ 371 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGN 371 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 11 1 45566777777776654 3455666666666545 677888888887764 35667777777
Q ss_pred HHHh----cCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC
Q 009782 435 LYGR----AGLIDEAYSMIVEKMEFEASPVVWGALLYACYL----HGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 435 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 491 (526)
.|.. .+++++|.+.|.++... .++..+..+...|.. .++.++|...|+++.+..|+
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 7777 77888888888666653 356677777777777 78888888888888887765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=167.18 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=112.3
Q ss_pred hcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 009782 138 TFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVH 217 (526)
Q Consensus 138 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 217 (526)
+.|++++|.++++++... .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567788888888887332 56888888888888888888888542 56668888888888888888888877
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 218 LDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 218 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
+...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+.
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---------- 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------- 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------
Confidence 766653 44567777888888888888888777753 666788888888888888888888887651
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHH
Q 009782 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377 (526)
Q Consensus 298 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~ 377 (526)
.|..++.++.+.|++++|.+.++++.
T Consensus 150 -------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA~----------------------- 175 (449)
T 1b89_A 150 -------------------------------NFGRLASTLVHLGEYQAAVDGARKAN----------------------- 175 (449)
T ss_dssp -------------------------------CHHHHHHHHHTTTCHHHHHHHHHHHT-----------------------
T ss_pred -------------------------------hHHHHHHHHHHhccHHHHHHHHHHcC-----------------------
Confidence 24667777777777777777666432
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 378 FEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 378 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
+..+|..++.+|...|+++.|...... +..++.....++..|.+.|++++|..+++..++..+
T Consensus 176 -----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 176 -----------STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred -----------CchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 556777777777777777777443332 112333344577777777777777777777777665
Q ss_pred CH-HHHHHHHHHHHh--cCChHHHHHHHHHHHccCC-----CCcchHHHHHHHHHhcCChHHHHHH
Q 009782 458 SP-VVWGALLYACYL--HGNVCMGETAAQKLFELEP-----DNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 458 ~~-~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
.. ..|+-+.-+|++ -++..+.++.|.....+.| .+...|..++-.|.+-|+|+.|...
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 33 666666655554 3345555555554444445 5667777788888888888877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-18 Score=159.92 Aligned_cols=273 Identities=9% Similarity=-0.051 Sum_probs=180.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 457777777777777777777777777653 2345566666666666677777777666666553 22344444444444
Q ss_pred HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 319 (526)
.. .|++++|...++++.+. .|+.......+
T Consensus 144 ~~-------------------------------~g~~~~A~~~~~~al~~--~p~~~~~~~~~----------------- 173 (365)
T 4eqf_A 144 TN-------------------------------TSHQQDACEALKNWIKQ--NPKYKYLVKNK----------------- 173 (365)
T ss_dssp HH-------------------------------TTCHHHHHHHHHHHHHH--CHHHHCC---------------------
T ss_pred Hc-------------------------------cccHHHHHHHHHHHHHh--CccchHHHhhh-----------------
Confidence 44 44555555555544442 22221110000
Q ss_pred HhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 009782 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDG-VLPDHLTFVSLLS 398 (526)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~ 398 (526)
......+..+...+...|++++|...|+++ .+.. -.++..++..+..
T Consensus 174 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------------l~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 174 ----KGSPGLTRRMSKSPVDSSVLEGVKELYLEA----------------------------AHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHH----------------------------HHHSCSSCCHHHHHHHHH
T ss_pred ----ccchHHHHHHHHHHhhhhhHHHHHHHHHHH----------------------------HHhCcCccCHHHHHHHHH
Confidence 001122334555666666666666655533 2211 1125678888888
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 477 (526)
.+...|++++|...++++.+. .+.+..+|..+..+|...|++++|.+.|.+.+...|+ ..++..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 899999999999999998874 3446888999999999999999999999888888886 5888999999999999999
Q ss_pred HHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 478 GETAAQKLFELEPD------------NEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 478 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
|...+++++++.|+ +..+|..++.++...|+.+.|.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988766 366799999999999999999887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-17 Score=149.45 Aligned_cols=269 Identities=10% Similarity=-0.015 Sum_probs=180.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHH
Q 009782 204 CAGLGLIRVGEKVHLDAVRFGFGFDG--FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 281 (526)
....|++..|+...+..... .|+. .....+..+|...|+++.|...++....++..++..+...+...|+.++|.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34456666666655543322 2222 2334456677777777777776665444455566666777777777777777
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHH
Q 009782 282 IFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361 (526)
Q Consensus 282 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 361 (526)
.++++...+..|+.. ..+..+..++...|++++|++.+++ ..+...+
T Consensus 87 ~l~~ll~~~~~P~~~-------------------------------~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~ 133 (291)
T 3mkr_A 87 ELDREMSRSVDVTNT-------------------------------TFLLMAASIYFYDQNPDAALRTLHQ--GDSLECM 133 (291)
T ss_dssp HHHHHHHSCCCCSCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHH
T ss_pred HHHHHHhcccCCCCH-------------------------------HHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHH
Confidence 777776655445432 2334455677777777777777776 2334444
Q ss_pred HHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 362 NSIIHA---HSKDHEALIYFEQMERDGVLPDHLTF---VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 362 ~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
..+... .|+.++|.+.++++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 443333 46777777777777774 4554311 22334445568999999999999875 45678888999999
Q ss_pred HHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHH-HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH
Q 009782 436 YGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCM-GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
+.+.|++++|.+.+.+.+...|+ +.++..++..+...|+.++ +.+++++++++.|+++.+. ....+.+.++++.
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLV 285 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHH
Confidence 99999999999999888888884 5788889999999998865 5788899999999987643 3455555666655
Q ss_pred HH
Q 009782 514 RV 515 (526)
Q Consensus 514 ~~ 515 (526)
.-
T Consensus 286 ~~ 287 (291)
T 3mkr_A 286 LQ 287 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-15 Score=150.49 Aligned_cols=366 Identities=13% Similarity=0.057 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cC
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQ----LKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FG 140 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g 140 (526)
.+++++|+..++...+.| ++..+..+-..+.. .+++++|.+.|+...+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 578899999999998875 67788888888888 899999999999998865 66777888888888 78
Q ss_pred ChhHHHHHHhccccCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCChHH
Q 009782 141 LIDEAHQVFDQMSNRTAFAFPWNSLISGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----LGLIRV 212 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~ 212 (526)
++++|.+.|++..+.+ ++.++..|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++
T Consensus 130 ~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 9999999999987664 23677888888887 789999999999998865 66778888888877 899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHH
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAK----CGDIVKARTVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIF 283 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 283 (526)
|.+.|+...+.| +...+..+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|...|
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 999999998876 55677778888886 8999999999988765 456677778888888 89999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc-----CChHHHHHHhccCCC-CC
Q 009782 284 RGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD-----GKLDQACWLFDHMPQ-KD 357 (526)
Q Consensus 284 ~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~ 357 (526)
++..+.|.. + .+..+...|... +++++|...|++..+ .+
T Consensus 283 ~~a~~~~~~-~----------------------------------a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~ 327 (490)
T 2xm6_A 283 RKSAEQGNS-D----------------------------------GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD 327 (490)
T ss_dssp HHHHTTTCH-H----------------------------------HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCH-H----------------------------------HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence 998776421 1 122233333333 455555555544332 12
Q ss_pred hhHHHHHHHhc---C---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCchh
Q 009782 358 VVSWNSIIHAH---S---KDHEALIYFEQMERDGVLPDHLTFVSLLSACAH----LGSVKVGERLFSVMVEKYGISPRVE 427 (526)
Q Consensus 358 ~~~~~~li~~~---~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 427 (526)
...+..+-..+ + +.++|..+|++..+.| +...+..|...|.. .+++++|.+.|++..+. + +..
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~ 400 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSA 400 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHH
Confidence 22222221111 1 3466777777777753 56788888888888 89999999999999875 4 567
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 428 HYACMVNLYGR----AGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 428 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
.+..|...|.. .++.++|...|.+++...|+ ......+...+. .+.+.+.+..++.++..|+
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHH
Confidence 78889999988 89999999999888876643 233333333322 2345555555555555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-18 Score=156.84 Aligned_cols=221 Identities=11% Similarity=0.070 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
+.|++++|.++++++ +++.+|..+..++.+.|++++|.+.|.. .+|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445666777777666 2334666777777777777777777643 2455566677777777777777777
Q ss_pred HHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 009782 148 VFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF 227 (526)
Q Consensus 148 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 227 (526)
.++...+..+++.+.+.|+.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 666665544444566677777777777777666663 255567777777777777777777777654
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhh
Q 009782 228 DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASL 307 (526)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 307 (526)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------------------- 204 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------- 204 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT--------------------
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH--------------------
Confidence 356677777777777777777777662 56677777777777777777743332211
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC
Q 009782 308 LRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ 355 (526)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 355 (526)
..+.-...++..|.+.|++++|..+++....
T Consensus 205 -----------------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 205 -----------------VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp -----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -----------------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 1122223577788888888888888876553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=144.35 Aligned_cols=275 Identities=12% Similarity=-0.001 Sum_probs=194.5
Q ss_pred HHhcCChhHHHHHHhccccCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHH
Q 009782 136 YATFGLIDEAHQVFDQMSNRTAFA--FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 213 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 213 (526)
....|+++.|+..++.....+|.. .....+..+|...|+++.|+..++.. -+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345678888888777766655532 24455677788888888877755441 345666777777788888888888
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 009782 214 EKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD 292 (526)
Q Consensus 214 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 292 (526)
.+.++++...+..| +...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 88888887766434 455666777888899999999999988 4567788889999999999999999999988753
Q ss_pred CcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCch
Q 009782 293 PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDH 372 (526)
Q Consensus 293 p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 372 (526)
|+..... .....+..+...|++++|.
T Consensus 161 p~~~~~~-----------------------------l~~a~~~l~~~~~~~~eA~------------------------- 186 (291)
T 3mkr_A 161 EDATLTQ-----------------------------LATAWVSLAAGGEKLQDAY------------------------- 186 (291)
T ss_dssp TTCHHHH-----------------------------HHHHHHHHHHCTTHHHHHH-------------------------
T ss_pred cCcHHHH-----------------------------HHHHHHHHHhCchHHHHHH-------------------------
Confidence 4322110 0011222333335555554
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH-HHHHHHh
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE-AYSMIVE 451 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 451 (526)
.+|+++.+. .+.+...++.+..++.+.|++++|...++++.+. -+-+..++..++..+...|+.++ +.+++.+
T Consensus 187 ---~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 187 ---YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp ---HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ---HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445555554 3457789999999999999999999999999875 34478889999999999999976 5688878
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009782 452 KMEFEASPVVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 452 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
.+...|+..... ....+.+.++++..-
T Consensus 261 ~~~~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 261 LKDAHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHH---HHHHHHHHHHHHHHH
Confidence 888888764332 234455555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-16 Score=152.22 Aligned_cols=380 Identities=9% Similarity=-0.045 Sum_probs=242.2
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhh-----c---cCCChhHHHHHHHHHHhcCChhHHHHHHhccccC----
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-----L---LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR---- 155 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 155 (526)
......|+.+...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334667899999999999999999999887642 1 1233567889999999999999999998876321
Q ss_pred ----CCC-cccHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCcc-hHHHHHHH---HhccCChHHHHHHHHHHHHhC
Q 009782 156 ----TAF-AFPWNSLISGYAEL--GEYEDAIALYFQMEEEGVEPDQF-TFPRVLKA---CAGLGLIRVGEKVHLDAVRFG 224 (526)
Q Consensus 156 ----~~~-~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g 224 (526)
++. +.+|..+..++... +++++|++.|++..+. .|+.. .+..+..+ +...++.++|.+.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 111 24565555555554 5789999999999875 45543 34444433 345678888999999888775
Q ss_pred CCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 225 FGFDGFVLNALVDMYAK----CGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 225 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
+.+..++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|...+++..+. .|+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~- 281 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA- 281 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH-
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH-
Confidence 4455666666555544 4677889998887643 45567888999999999999999999998875 33322
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHH
Q 009782 298 ISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIY 377 (526)
Q Consensus 298 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~ 377 (526)
.++..+..+|...+....+...... ..........++|...
T Consensus 282 ------------------------------~~~~~lg~~y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 282 ------------------------------YLHCQIGCCYRAKVFQVMNLRENGM---------YGKRKLLELIGHAVAH 322 (472)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhhhHHHHHH---------HHHHHHHhhHHHHHHH
Confidence 2222222233211111000000000 0000011223567777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch--hHHHHHHH-HHHhcCChHHHHHHHHhhc
Q 009782 378 FEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV--EHYACMVN-LYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 378 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 453 (526)
+++..+. .|+ ..++..+...+...|++++|.+.|+++.+. ...+.. ..+..+.. .+...|+.++|++.|.+++
T Consensus 323 ~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 323 LKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7776663 333 357888889999999999999999999864 332221 12333332 2357899999999998999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 454 EFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 454 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.+.|+...... ....+.+++++.++.+|+++.+|..|+.+|...|++++|.+.|++..+.|-
T Consensus 400 ~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 400 KINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred hcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88887643332 234456778888899999999999999999999999999999999887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-14 Score=147.14 Aligned_cols=377 Identities=10% Similarity=0.080 Sum_probs=285.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhc--cCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNL--LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLIS 167 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 167 (526)
++.-....+++|...|.+.+|.++++.+.-.+ +..+....+.++.+..+. +..+..++.++..... ..-+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-----~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-----APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-----HHHHHH
Confidence 56666778888999999999999999988432 224556777788777777 5577777776665222 345778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 009782 168 GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK 247 (526)
Q Consensus 168 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 247 (526)
.+...|.+++|..+|++... .....+.++ ...|++++|.++.++. -+..+|..+..++...|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 88889999999999999621 111222232 2678899999988754 356788899999999999999
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCC
Q 009782 248 ARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVE 324 (526)
Q Consensus 248 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~ 324 (526)
|.+.|.+. .|...|..++.++.+.|++++|.+.|....+..-.|...+ .+.-++ ++++....+ . -.
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~f----I---~~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEF----I---NG 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHH----H---hC
Confidence 99999775 6777888999999999999999999998776542222222 233333 444432222 2 13
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 009782 325 WDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA 401 (526)
Q Consensus 325 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 401 (526)
++...+..+...|...|++++|..+|... ..|..+... +|++++|.+.+++. -+..+|..+-.+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45566777999999999999999999985 367666666 58889999999876 35689999999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh--cCChHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYL--HGNVCMG 478 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~--~g~~~~a 478 (526)
..|++..|...... +..++..+..++..|.+.|.+++|+++++..++.+|.. ..|..+...+++ -++..++
T Consensus 1262 e~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999876553 23356677799999999999999999998899988754 677777777665 4567777
Q ss_pred HHHHHHHHccCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 009782 479 ETAAQKLFELEP-----DNEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 479 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
.+.|..-..+.| .+...|..++-.|.+.|+|+.|..
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 777777666655 578889999999999999999984
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=149.63 Aligned_cols=273 Identities=10% Similarity=-0.075 Sum_probs=178.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 456666667777777777777777776643 2344556666666667777777777777666653 33444555555555
Q ss_pred HhcCCHHHHHHHHhhcCCCC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKD---LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG 316 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~ 316 (526)
...|++++|.+.++++.+.+ ...+..+... .|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~----------------------- 134 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DV----------------------- 134 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HH-----------------------
Confidence 55555555555555443211 1111111000 00
Q ss_pred HHHHhCCCCchhHHhHHHH--HHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 009782 317 WVLRRGVEWDLCIANSLIV--VYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFV 394 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 394 (526)
+......+.. .+...|++++|...+ +++.+.. +.+...+.
T Consensus 135 ---------~~~~~~~~~~~~~~~~~~~~~~A~~~~----------------------------~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 135 ---------DIDDLNVQSEDFFFAAPNEYRECRTLL----------------------------HAALEMN-PNDAQLHA 176 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHH----------------------------HHHHHHS-TTCHHHHH
T ss_pred ---------HHHHHHHHHHhHHHHHcccHHHHHHHH----------------------------HHHHhhC-CCCHHHHH
Confidence 0000001101 133334444444443 3333321 22566788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHG 473 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 473 (526)
.+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 8888888889999999999988864 3346778888999999999999999999787877775 578888999999999
Q ss_pred ChHHHHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPD------------NEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
++++|.+.++++++..|. +..++..++.+|.+.|++++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999888 6788999999999999999999887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-15 Score=146.79 Aligned_cols=398 Identities=9% Similarity=0.014 Sum_probs=237.6
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHH-
Q 009782 58 LTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLY- 136 (526)
Q Consensus 58 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~- 136 (526)
.+..++. +...|++++|..+++.+.+..+. +...+...+..+.+.|+++.|.++|+...+.. |+...|...+...
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Confidence 3333343 35578999999999999977533 77889999999999999999999999999864 5777887777543
Q ss_pred HhcCChhHHHH----HHhccccC---CC-CcccHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCc---ch
Q 009782 137 ATFGLIDEAHQ----VFDQMSNR---TA-FAFPWNSLISGYAE---------LGEYEDAIALYFQMEEEGVEPDQ---FT 196 (526)
Q Consensus 137 ~~~g~~~~a~~----~~~~~~~~---~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~---~t 196 (526)
...|+.++|.+ +|+..... ++ +...|...+....+ .|+++.|..+|++..+. |+. ..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~ 167 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQL 167 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHH
Confidence 45677777665 66665321 22 23567777776655 68899999999999872 432 22
Q ss_pred HHHHHHHHh-------------ccCChHHHHHHHHHHHHh--C-------CCCc--------hhHHHHHHHHHHhc----
Q 009782 197 FPRVLKACA-------------GLGLIRVGEKVHLDAVRF--G-------FGFD--------GFVLNALVDMYAKC---- 242 (526)
Q Consensus 197 ~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~--g-------~~~~--------~~~~~~li~~~~~~---- 242 (526)
|........ ..++++.|..++...... + ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 322222110 122334444444332110 0 1221 12222222211111
Q ss_pred CCH----HHHHHHHhhcCC---CCcccHHHHHHHHHh-------CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 243 GDI----VKARTVFDRIGN---KDLISYNSMLTGYIH-------HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 243 g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
++. +++..+|++... .+...|..++..+.+ .|+++.|.. ..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~-------------------------~~ 302 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL-------------------------FS 302 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH-------------------------HH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh-------------------------hh
Confidence 111 233334433332 123344444444433 344430000 00
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-h-hHHHHHHHh---cCCchHHHHHHHHH
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-V-VSWNSIIHA---HSKDHEALIYFEQM 381 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~---~~~~~~a~~~~~~m 381 (526)
+.|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...... .|+.++|..+|++.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 14444444444321223455556666666666666666666665543 22 1 234433332 34556666666666
Q ss_pred HHCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-
Q 009782 382 ERDGVLPD-HLTFVSLLSA-CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS- 458 (526)
Q Consensus 382 ~~~~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 458 (526)
.+. .|+ ...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|.+.+...|.
T Consensus 383 l~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 383 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred Hhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 653 232 2223222222 335899999999999998752 346788999999999999999999999888765442
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 459 ----PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 459 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
...|...+......|+.+.+..+.+++.+..|+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 247888888888999999999999999998874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-14 Score=148.15 Aligned_cols=410 Identities=10% Similarity=0.089 Sum_probs=293.1
Q ss_pred CCccccccCCCCchHHHHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHH
Q 009782 55 TPLLTNQKAFPKTKLQALDSIIQDLESSVQNGI--TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKL 132 (526)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 132 (526)
+|.-.+.....+...|.+.+|++++++..-.+- .-+...-+.++....+. +.....+..+.+.. .+ ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHH
Confidence 333345556666788999999999999984421 12344555566555555 55655555555442 11 3346
Q ss_pred HHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChH
Q 009782 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYA-ELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIR 211 (526)
Q Consensus 133 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 211 (526)
...+...|.+++|..+|++... +...+..+. ..+++++|.++.++. -+..+|..+..++...|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 7788889999999999999741 222223333 678899999998865 24678889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 212 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
+|.+.|.+. .|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 999998663 4777888899999999999999999977654 34444556999999999988644442 2
Q ss_pred CCCCcHHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHH
Q 009782 290 GFDPDPVAISSILANA---SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIH 366 (526)
Q Consensus 290 ~~~p~~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 366 (526)
.++...+..+-..| |+++.|..+|..+ ..|..+..+|++.|++++|.+.+++.. +..+|..+-.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCF 1258 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHH
Confidence 23444444443333 8999999999885 478899999999999999999999875 4567766665
Q ss_pred hc---CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhc--C
Q 009782 367 AH---SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRA--G 440 (526)
Q Consensus 367 ~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g 440 (526)
+| +++..|...... +..+...+..++..|.+.|.+++|..+++... ++.+ ....|+-|..+|.+- +
T Consensus 1259 acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHH
Confidence 54 444455554432 34466778899999999999999999998877 4444 456677777777654 5
Q ss_pred ChHHHHHHHHhhcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc------------cCCCCcchHHHHHHH
Q 009782 441 LIDEAYSMIVEKMEFEA------SPVVWGALLYACYLHGNVCMGETAAQKLFE------------LEPDNEHNFELLIKI 502 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~ 502 (526)
+..++.+.|...+.+.| +...|..+...|.+.|+++.|...+-.-.. ..+.|+..|...+.-
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 77788888867776555 347799999999999999998843322211 246677777777777
Q ss_pred HHhcC---------------ChHHHHHHHH
Q 009782 503 YGNAG---------------RLDDVERVER 517 (526)
Q Consensus 503 ~~~~g---------------~~~~A~~~~~ 517 (526)
|...+ +++.+.++++
T Consensus 1411 yl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1411 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77666 7777777766
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-16 Score=148.37 Aligned_cols=239 Identities=10% Similarity=-0.023 Sum_probs=168.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
+..+...+.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|+++.+.. |
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p--------------- 130 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--P--------------- 130 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C---------------
Confidence 33344444444444444444444332 234456667777777777888888887776642 2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p 388 (526)
.+...+..+..+|...|++++|...|+++.+.+....... .....
T Consensus 131 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------------~~~~~ 175 (365)
T 4eqf_A 131 ----------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV-------------------KNKKG 175 (365)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------
T ss_pred ----------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH-------------------hhhcc
Confidence 2345567788899999999999998886553111000000 00001
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
....+..+...+...|++++|.++++++.+...-.++...+..+...|...|++++|.+.+.+.+...|+ ..+|..+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 255 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA 255 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2234556678899999999999999999986222226889999999999999999999999888888885 589999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.|...|++++|+..+++++++.|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998753
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-16 Score=145.92 Aligned_cols=282 Identities=13% Similarity=-0.021 Sum_probs=209.7
Q ss_pred CchHHHHHHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCC
Q 009782 66 KTKLQALDSIIQ-DLESSVQNGI---TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL 141 (526)
Q Consensus 66 ~~~~~~~~~a~~-~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 141 (526)
+...+++++|++ .+++...... ..+...+..+...+.+.|++++|.+.++.+.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 345578888888 7776554322 2245678888889999999999999999998865 5677889999999999999
Q ss_pred hhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-hHHH---------------HHHHH
Q 009782 142 IDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQF-TFPR---------------VLKAC 204 (526)
Q Consensus 142 ~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~---------------ll~~~ 204 (526)
+++|.+.|+++...+|+ +.+|..+...+...|++++|++.++++.+.. |+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999988776653 4778899999999999999999999998854 3322 2221 23334
Q ss_pred hccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHH
Q 009782 205 AGLGLIRVGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAF 280 (526)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 280 (526)
...|++++|...++.+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48899999999999998875221 578889999999999999999999988753 35678899999999999999999
Q ss_pred HHHHHHHHcCCCCc-HHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCC----------chhHHhHHHHHHHhcCChHHH
Q 009782 281 DIFRGMILNGFDPD-PVAISSILANA---SLLRIGAQVHGWVLRRGVEW----------DLCIANSLIVVYSKDGKLDQA 346 (526)
Q Consensus 281 ~~~~~m~~~~~~p~-~~~~~~ll~~~---~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A 346 (526)
..|+++.+.. |+ ...+..+-..+ |++++|...++.+....... ...+|..+..+|...|++++|
T Consensus 272 ~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 272 AAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999988753 33 33333333333 88888888888887653322 267888888999999999998
Q ss_pred HHHhcc
Q 009782 347 CWLFDH 352 (526)
Q Consensus 347 ~~~~~~ 352 (526)
..+++.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 888774
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-18 Score=171.48 Aligned_cols=150 Identities=11% Similarity=0.176 Sum_probs=123.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHhcccc-----CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHH
Q 009782 125 NKGISSKLLRLYATFGLIDEAHQVFDQMSN-----RTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPR 199 (526)
Q Consensus 125 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 199 (526)
-..+||++|++|++.|++++|.++|++|.. ..|++++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988753 267889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcccHHHHHHHHHhC
Q 009782 200 VLKACAGLGLI-RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-----DLISYNSMLTGYIHH 273 (526)
Q Consensus 200 ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 273 (526)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.-+ .+.+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999998777765444444443333221 133444455556554
Q ss_pred C
Q 009782 274 G 274 (526)
Q Consensus 274 g 274 (526)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-18 Score=168.70 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=111.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEE---EGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALV 236 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 236 (526)
.+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 6799999999999999999999988764 5789999999999999999999999999999999999999998888888
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHH
Q 009782 237 DMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHG 316 (526)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~ 316 (526)
+++++.|+. .++|.++|++|.+.|+.||..+|+.++.+.+.- ...+..+
T Consensus 208 ~glcK~G~~------------------------------~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-~vL~~Vr 256 (1134)
T 3spa_A 208 QCMGRQDQD------------------------------AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-TVLKAVH 256 (1134)
T ss_dssp HHHHHHTCC------------------------------HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-HHHHHHG
T ss_pred HHHHhCCCc------------------------------HHHHHHHHHHHHHcCCCCChhhcccccChhhHH-HHHHHHH
Confidence 877766542 345667777788888888888888776554322 2222222
Q ss_pred HHHHhCCCCc------hhHHhHHHHHHHhcC
Q 009782 317 WVLRRGVEWD------LCIANSLIVVYSKDG 341 (526)
Q Consensus 317 ~~~~~~~~~~------~~~~~~l~~~~~~~g 341 (526)
.+ ..+..|+ ..+...|.+.|.+.+
T Consensus 257 kv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 257 KV-KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GG-CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred Hh-CcccCCCCCCcccccchHHHHHHHccCC
Confidence 22 2233333 344455666666555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8e-15 Score=136.64 Aligned_cols=254 Identities=13% Similarity=-0.039 Sum_probs=142.1
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhH
Q 009782 65 PKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDE 144 (526)
Q Consensus 65 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 144 (526)
.+...|++++|+.+++.+.+..+. +...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 334555666666666666554332 45555555556666666666666666665543 3345555556666666666666
Q ss_pred HHHHHhccccCCCCc-ccHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 009782 145 AHQVFDQMSNRTAFA-FPWNSL--------------IS-GYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 208 (526)
Q Consensus 145 a~~~~~~~~~~~~~~-~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 208 (526)
|.+.++++....|.. ..+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...+...|
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhc
Confidence 666666655444322 222222 11 2444555555666555555432 223445555555555556
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHH
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRG 285 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 285 (526)
++++|.+.++.+.+.. +.+..++..+...+...|++++|...|+++.+ .+..++..+...+...|++++|.+.+++
T Consensus 187 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 187 NYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6666666555555543 33344555555555555555555555554432 2334555555555555555555555555
Q ss_pred HHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCC-----------chhHHhHHHHHHHhcCChHHHHHHhccCC
Q 009782 286 MILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEW-----------DLCIANSLIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 286 m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
... ..... +...+..+..++.+.|++++|..++++..
T Consensus 266 a~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 266 AIY--------------------------------MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHH--------------------------------HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHH--------------------------------hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 544 22221 45677889999999999999999998765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-14 Score=141.72 Aligned_cols=391 Identities=9% Similarity=-0.037 Sum_probs=235.1
Q ss_pred CCCccccccCCCCchHHHHHHHHHHHHHHhhC-----C---CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhc----
Q 009782 54 PTPLLTNQKAFPKTKLQALDSIIQDLESSVQN-----G---ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL---- 121 (526)
Q Consensus 54 p~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 121 (526)
.....|+.+...+...|++++|++.+++..+. + ......+|+.+..++...|++++|...++...+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34456777777777889999999999887542 1 12245678899999999999999999999876531
Q ss_pred ---cCCChhHHHHHHHHHHhc--CChhHHHHHHhccccCCCCc-ccHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCC
Q 009782 122 ---LRKNKGISSKLLRLYATF--GLIDEAHQVFDQMSNRTAFA-FPWNSLISG---YAELGEYEDAIALYFQMEEEGVEP 192 (526)
Q Consensus 122 ---~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p 192 (526)
......++..+..++... +++++|++.|++....+|+. ..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 012345666666566554 46899999999988776643 444444444 345678889999999888753 23
Q ss_pred CcchHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcccHHH
Q 009782 193 DQFTFPRVLKACA----GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--K-DLISYNS 265 (526)
Q Consensus 193 ~~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 265 (526)
+..++..+...+. ..|+.++|.+.+++..... +.+..++..+...|...|++++|...|++..+ | +..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 3445555544443 4567889999999988875 55677889999999999999999999988764 3 3455666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
+..+|...+.... ... ...........+..+.+...++...+... .+...+..+...|...|++++
T Consensus 287 lg~~y~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NLR----ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHHHHHH---------HC----------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhh---------hHH----HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHH
Confidence 6555533211111 000 00000111122445666677776666543 345566778888888888888
Q ss_pred HHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHHHHhcCC
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL--TFVSLLS-ACAHLGSVKVGERLFSVMVEKYGI 422 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~ 422 (526)
|...|++.. +....|... .+..+.. .....|+.++|...+++..+ +
T Consensus 353 A~~~~~kaL----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i 401 (472)
T 4g1t_A 353 AEYYFQKEF----------------------------SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---I 401 (472)
T ss_dssp HHHHHHHHH----------------------------HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---S
T ss_pred HHHHHHHHH----------------------------hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c
Confidence 888776533 211111111 1222222 23467899999999998875 4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
.|+....... ...+.+++.+.+...|+ ..+|..++..|...|++++|++.|++++++.|.++.+...++
T Consensus 402 ~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 402 NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 5654332222 23445556566666774 588999999999999999999999999999988877665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=129.41 Aligned_cols=109 Identities=7% Similarity=-0.070 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 469 (526)
..+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+.+.+...|+ ...+..+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45666666777777777777777777654 2335666777777777777777777777666666664 46666677777
Q ss_pred HhcCChHHHHHHHHHHHccC------CCCcchHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELE------PDNEHNFELLIK 501 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 501 (526)
...|++++|...+++++++. |.+..++..+..
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 77777777777777777766 665555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-14 Score=126.56 Aligned_cols=245 Identities=10% Similarity=0.005 Sum_probs=163.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcc----cHHHHHHHHHh
Q 009782 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN--KDLI----SYNSMLTGYIH 272 (526)
Q Consensus 199 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~ 272 (526)
.....+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+ ++.. +|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444455555555555555555442 22333455555555556666666655554433 1222 36677777778
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhcc
Q 009782 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDH 352 (526)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 352 (526)
.|++++|...|++..+.. +.+..++..+..+|...|++++|...|++
T Consensus 87 ~~~~~~A~~~~~~a~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHHhcC---------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887776632 12345667888899999999999999988
Q ss_pred CCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 009782 353 MPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACM 432 (526)
Q Consensus 353 ~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (526)
..+.+ +.+...+..+...+...+++++|.+.++++.+. .+.+...+..+
T Consensus 134 al~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~ 182 (272)
T 3u4t_A 134 QIRPT-----------------------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWR 182 (272)
T ss_dssp GCCSS-----------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HhhcC-----------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHH
Confidence 76421 123445656662444456999999999999874 23357777888
Q ss_pred HHHHHhcCC---hHHHHHHHHhhcCC---CCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 433 VNLYGRAGL---IDEAYSMIVEKMEF---EASP------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 433 ~~~~~~~g~---~~~A~~~~~~~~~~---~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
...+...|+ +++|...+.+.+.. .|+. ..|..+...|...|++++|.+.++++++++|+++.++..+.
T Consensus 183 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 888888888 88888888666533 2542 57788889999999999999999999999999999888888
Q ss_pred HHHHhcCC
Q 009782 501 KIYGNAGR 508 (526)
Q Consensus 501 ~~~~~~g~ 508 (526)
......+.
T Consensus 263 ~~~~~~~~ 270 (272)
T 3u4t_A 263 MKLEHHHH 270 (272)
T ss_dssp --------
T ss_pred hhhccccc
Confidence 77665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-13 Score=132.60 Aligned_cols=341 Identities=12% Similarity=0.008 Sum_probs=188.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCCh---hHHHHHHhccccCCCCcccHHHHHHHHHhcC
Q 009782 97 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLI---DEAHQVFDQMSNRTAFAFPWNSLISGYAELG 173 (526)
Q Consensus 97 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 173 (526)
+...+.+.|++++|.++|+...+.| +...+..|...|...|+. ++|...|++..+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCC
Confidence 4556677889999999999998876 334455566666777877 8999999988766 4477777777566655
Q ss_pred -----ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--
Q 009782 174 -----EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI---RVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCG-- 243 (526)
Q Consensus 174 -----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 243 (526)
++++|+..|++..+.|. ...+..+...|...+.. ..+.+.+......| +......+...|...+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 77899999999988663 33666677777655543 34555555555555 3455666777777777
Q ss_pred --CHHHHHHHHhhcCCCCcccHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHH
Q 009782 244 --DIVKARTVFDRIGNKDLISYNSMLTGYIHHG---LLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318 (526)
Q Consensus 244 --~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~ 318 (526)
+.+.+..+++.....+...+..|...|...| +.++|++.|++..+.|......
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~---------------------- 215 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR---------------------- 215 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHH----------------------
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHH----------------------
Confidence 5666777778777777789999999999999 8999999999988876433221
Q ss_pred HHhCCCCchhHHhHHHHHHHhc----CChHHHHHHhccCCCCChhHHHHHHH------hcCCchHHHHHHHHHHHCCCCC
Q 009782 319 LRRGVEWDLCIANSLIVVYSKD----GKLDQACWLFDHMPQKDVVSWNSIIH------AHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~------~~~~~~~a~~~~~~m~~~~~~p 388 (526)
+..+...|... +++++|...|++....+...+..|-. ..++.++|..+|++..+.|
T Consensus 216 -----------~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 216 -----------VDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp -----------HHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred -----------HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 12233333222 45555555554433111111111110 1233444555555555544
Q ss_pred CHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCCCCCH
Q 009782 389 DHLTFVSLLSACAHLG-----SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 459 (526)
+...+..|...|. .| ++++|.+.|++.. +-+...+..|...|.. ..++++|...|.+... ..++
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g~~ 354 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NGQN 354 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TTCT
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hChH
Confidence 3444555555554 34 6666666666553 2244555555555544 2366666666655443 2233
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC
Q 009782 460 VVWGALLYACYL----HGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 460 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 491 (526)
.....|...|.. ..|.++|...++++.+..+.
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 444445555543 34666666666666665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=128.46 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=35.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 161 PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 161 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
.|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|.+.++.+.+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 45555556666666666666666665554 45555555666666666666666666555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-14 Score=127.87 Aligned_cols=218 Identities=11% Similarity=-0.082 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 306 (526)
.++..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...|++..+.. |
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~------------- 108 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--P------------- 108 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--c-------------
Confidence 3444444455555555555555544432 234455555566666666666666666655431 1
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~ 386 (526)
.+...+..+..+|...|++++|...|+++. + .
T Consensus 109 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----------------------------~--~ 140 (275)
T 1xnf_A 109 ------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFY----------------------------Q--D 140 (275)
T ss_dssp ------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------H--H
T ss_pred ------------------cccHHHHHHHHHHHHhccHHHHHHHHHHHH----------------------------H--h
Confidence 123344555666666666666666555332 1 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-----HHH
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-----PVV 461 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~ 461 (526)
.|+.......+..+...|++++|...++..... .+++...+ .++..+...++.++|.+.+.+.+...|. ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 233333333334445668888888888877764 34444444 4667777888888899988777776663 477
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVE 516 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (526)
+..+...+...|++++|...++++++..|++.. ....++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 888889999999999999999999999987644 4467888899999988765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=126.07 Aligned_cols=193 Identities=15% Similarity=0.049 Sum_probs=147.7
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCC-HHHHHHH
Q 009782 324 EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD-HLTFVSL 396 (526)
Q Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 396 (526)
+++...+..+...+.+.|++++|...|++..+ | +...+..+-.. .|+.++|...+++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 34566777888888899999999999887764 3 33344333333 6888899999999888 3454 5688888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHH
Q 009782 397 LSACAHL-----------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGAL 465 (526)
Q Consensus 397 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 465 (526)
...+... |++++|...+++..+. -+-+...+..+...|...|++++|+..|.+.+....++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8899999 9999999999999874 23367888999999999999999999998877655666889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...+...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-13 Score=121.60 Aligned_cols=221 Identities=11% Similarity=-0.021 Sum_probs=185.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC
Q 009782 64 FPKTKLQALDSIIQDLESSVQNGIT---VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140 (526)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 140 (526)
......+++++|+..++.+.+.... .+..++..+...+...|++++|.+.|+.+.+.. +.+..++..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 3455679999999999999987432 256778888899999999999999999999875 567889999999999999
Q ss_pred ChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
++++|.+.|++....+|+ +.+|..+...+.+.|++++|...|+++.+. .|+.......+..+...|++++|...++.
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998876553 478999999999999999999999999885 46666666666666788999999999988
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------cccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKD-------LISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..... +++...+. ++..+...++.++|...++.....+ ...|..+...|...|++++|...|++....
T Consensus 170 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 170 HFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88764 44444444 7777888899999999999887643 467888999999999999999999999875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-14 Score=135.48 Aligned_cols=209 Identities=11% Similarity=-0.014 Sum_probs=145.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFD-PDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (526)
.++..+...|...|++++|...+++..+.... .+. .....++..+...|..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR----------------------------LSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch----------------------------HHHHHHHHHHHHHHHH
Confidence 35566666777777777777777765542000 000 0123345667778888
Q ss_pred cCC-----------------hHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 009782 340 DGK-----------------LDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACA 401 (526)
Q Consensus 340 ~g~-----------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 401 (526)
.|+ +++|...+++ ++++.... +-.+ ...++..+...+.
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~---------------------al~~~~~~---~~~~~~~~~~~~la~~~~ 234 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQE---------------------NLKLMRDL---GDRGAQGRACGNLGNTYY 234 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHH---------------------HHHHHHHH---TCHHHHHHHHHHHHHHHH
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHH---------------------HHHHHHHc---CCHHHHHHHHHHHHHHHH
Confidence 888 6666665542 33333322 1112 2347788888899
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------PVVWGALLYACY 470 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~ 470 (526)
..|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+.+.+...|. ..++..+...+.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 235 LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999988764211112 237788899999999999999999766643332 367788888999
Q ss_pred hcCChHHHHHHHHHHHccCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 471 LHGNVCMGETAAQKLFELEPD------NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..|++++|...+++++++.+. ...++..++.+|...|++++|.+.+++..+
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999886433 234788899999999999999999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-14 Score=133.52 Aligned_cols=268 Identities=16% Similarity=0.035 Sum_probs=147.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----CcccHHHH
Q 009782 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFD----GFVLNALVDMYAKCGDIVKARTVFDRIGN-----K----DLISYNSM 266 (526)
Q Consensus 200 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l 266 (526)
....+...|++++|...++.+.+.+. .+ ..++..+...|...|++++|...+++... . ...++..+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33344444444444444444444321 11 12344444455555555555554443321 0 12355666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC---
Q 009782 267 LTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGK--- 342 (526)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 342 (526)
...+...|++++|...+++..+... .++.. ....++..+...|...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------~~~~~~~~l~~~~~~~g~~~~ 145 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKV----------------------------GEARALYNLGNVYHAKGKSFG 145 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------HHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccccc----------------------------chHHHHHHHHHHHHHcCCccc
Confidence 7777777777777777776654210 00000 012345566777777777
Q ss_pred -----------------hHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 009782 343 -----------------LDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLG 404 (526)
Q Consensus 343 -----------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 404 (526)
+++|...+++. ..++... +..|. ..++..+...+...|
T Consensus 146 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a---------------------l~~~~~~---~~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 146 CPGPQDVGEFPEEVRDALQAAVDFYEEN---------------------LSLVTAL---GDRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHH---------------------HHHHHHT---TCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHhc---cCcHHHHHHHHHHHHHHHHcc
Confidence 66666555432 2222211 11111 235666666777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---C----HHHHHHHHHHHHhcC
Q 009782 405 SVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---S----PVVWGALLYACYLHG 473 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g 473 (526)
++++|...++++.+...-.++ ...+..+...|...|++++|...+.+.+...| + ..++..+...+...|
T Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 777777777776643111111 23566677777777777777777755553222 1 245666677777777
Q ss_pred ChHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 474 NVCMGETAAQKLFELEPDN------EHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
++++|...+++++++.+.. ..++..++.+|...|++++|.+.+++..
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777653322 3456677777777777777777777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.8e-14 Score=129.92 Aligned_cols=132 Identities=12% Similarity=-0.010 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---C----H
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---S----P 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~ 459 (526)
.++..+...+...|++++|...++++.+...-.++ ...+..+...+...|++++|.+.+.+.+...+ + .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 46788888899999999999999988754111111 34778889999999999999999966663322 1 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDN------EHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+.+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 677888889999999999999999998865432 346888999999999999999999998764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=119.37 Aligned_cols=195 Identities=17% Similarity=0.081 Sum_probs=141.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHH
Q 009782 88 TVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLI 166 (526)
Q Consensus 88 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li 166 (526)
+++...+..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++....+|+. ..|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3466677777778888888888888888888765 5667788888888888888888888888887766643 5677788
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 009782 167 SGYAEL-----------GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNAL 235 (526)
Q Consensus 167 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 235 (526)
..+... |++++|+..|++..+.. +-+...+..+..++...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888888 88888888888887753 2244567777788888888888888888888877 677778888
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 009782 236 VDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGM 286 (526)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (526)
..+|...|++++|...|++..+ .+...+..+...+...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888887753 34567777888888888888888887764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-12 Score=116.33 Aligned_cols=161 Identities=14% Similarity=0.046 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHH
Q 009782 128 ISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ--FTFPRVLKAC 204 (526)
Q Consensus 128 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~ 204 (526)
.+......+...|++++|+..|++....+|+. ..|..+...+...|++++|+..+++..+.+..|+. .+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34455666777788888888887776665543 46777777888888888888888887763322222 1267777778
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChHHHHH
Q 009782 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK---DLISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~ 281 (526)
...|++++|.+.++...+.. +.+..++..+...|...|++++|.+.|++..+. +...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877764 445567777888888888888888888777652 33445555523334447777777
Q ss_pred HHHHHHHc
Q 009782 282 IFRGMILN 289 (526)
Q Consensus 282 ~~~~m~~~ 289 (526)
.|++..+.
T Consensus 164 ~~~~a~~~ 171 (272)
T 3u4t_A 164 SFVKVLEL 171 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=133.32 Aligned_cols=295 Identities=13% Similarity=0.031 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhH
Q 009782 162 WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKACAGLGLIRVGEKVHLDAVRF----GFG-FDGFV 231 (526)
Q Consensus 162 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~ 231 (526)
+......+...|++++|...|++..+.+ |+. ..+..+...+...|++++|...+++..+. +.. ....+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344445555555666666555555532 221 24445555555566666666655554432 111 12334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCC--------------------hHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGL--------------------LVEAFDI 282 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 282 (526)
+..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55566666666666666666655432 11 2356666667777777 6666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC-CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHH
Q 009782 283 FRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSW 361 (526)
Q Consensus 283 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 361 (526)
+.+.... .. ..+. .....++..+...|...|++++|...+++..
T Consensus 170 ~~~al~~-------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------- 214 (406)
T 3sf4_A 170 YEENLSL-------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL------- 214 (406)
T ss_dssp HHHHHHH-------------------------HH---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH-------
T ss_pred HHHHHHH-------------------------HH---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-------
Confidence 6554331 00 0000 0113456777888999999999988887433
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHH
Q 009782 362 NSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLY 436 (526)
Q Consensus 362 ~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 436 (526)
++... .+..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|
T Consensus 215 --------------~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 215 --------------LIAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp --------------HHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 22221 11111 1237788888899999999999999988753211111 56778889999
Q ss_pred HhcCChHHHHHHHHhhcCCCC---C----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC------CCCcchHHHHHHHH
Q 009782 437 GRAGLIDEAYSMIVEKMEFEA---S----PVVWGALLYACYLHGNVCMGETAAQKLFELE------PDNEHNFELLIKIY 503 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 503 (526)
...|++++|.+.+.+.+...+ + ..++..+...+...|++++|.+.+++++++. +....++..++.+|
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 999999999999966663321 1 3677888889999999999999999998853 22355688888999
Q ss_pred HhcCChH
Q 009782 504 GNAGRLD 510 (526)
Q Consensus 504 ~~~g~~~ 510 (526)
...|+..
T Consensus 358 ~~~g~~~ 364 (406)
T 3sf4_A 358 MVLGLSY 364 (406)
T ss_dssp HHHHTTS
T ss_pred HHhhHhH
Confidence 8888763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-13 Score=113.10 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=142.4
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLG 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 404 (526)
+..+|..+...|...|++++|+..|++.. + +.| +...+..+..++...|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al----------------------------~--~~p~~~~~~~~la~~~~~~~ 53 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVL----------------------------K--ADPNNVETLLKLGKTYMDIG 53 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------------H--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------H--hCCCCHHHHHHHHHHHHHCC
Confidence 45677888888988998888888877533 2 234 4568888999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQ 483 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 483 (526)
++++|...++.+... .+.+...+..+...+...++++.|.+.+.+.+...|+ ...+..+...+.+.|++++|++.++
T Consensus 54 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 54 LPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 999999999999874 3446777888889999999999999999888888885 4788889999999999999999999
Q ss_pred HHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 484 KLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
++++++|.++.+|..++.+|.+.|++++|.+.|++..+..
T Consensus 132 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999987653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=120.09 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANAS 306 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 306 (526)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...+++..+.. |
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~------------- 88 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--S------------- 88 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-------------
Confidence 3444444455555555555555554432 233455555666666666666666666655431 1
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGV 386 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~ 386 (526)
.+...+..+...|...|++++|...++++. +. .
T Consensus 89 ------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----------------------------~~-~ 121 (243)
T 2q7f_A 89 ------------------SAATAYYGAGNVYVVKEMYKEAKDMFEKAL----------------------------RA-G 121 (243)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------HH-T
T ss_pred ------------------cchHHHHHHHHHHHHhccHHHHHHHHHHHH----------------------------Hh-C
Confidence 123334455566666666666666555322 11 1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHH
Q 009782 387 LPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGAL 465 (526)
Q Consensus 387 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 465 (526)
+.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.+.+.+...|+ ..++..+
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 224556777777888888888888888888764 3346777888888899999999999999777776664 5778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 466 LYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 466 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
...+...|++++|...++++++..|+++.++..+.......
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 88999999999999999999999999888777666554433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=115.01 Aligned_cols=197 Identities=13% Similarity=-0.013 Sum_probs=168.6
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGY 169 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~ 169 (526)
...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++....|. ...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4567778888889999999999999998875 557788999999999999999999999998766553 46788899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEP-DQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKA 248 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 248 (526)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733344 44577888889999999999999999998875 45678888999999999999999
Q ss_pred HHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 249 RTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 249 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
...|+++.+ .+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999988765 34567888888999999999999999999875
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=116.90 Aligned_cols=195 Identities=9% Similarity=-0.049 Sum_probs=150.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
...+..+...+...|++++|...|+++.+ .+...+..+... .++.++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455666666777777777777666543 233333333332 466677777777776642 22567888888899
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 478 (526)
...|++++|.++++++.+. +..| +...+..+...|...|++++|.+.+.+.+...|+ ...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998762 3455 5677888889999999999999999888877774 57888888999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
...++++++..|++...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999889999999999999999999999887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-12 Score=113.69 Aligned_cols=127 Identities=12% Similarity=-0.061 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCCCCCHHH
Q 009782 390 HLTFVSLLSACAH----LGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEFEASPVV 461 (526)
Q Consensus 390 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~ 461 (526)
...+..+...|.. .+++++|.+.+++..+. + +...+..+...|.. .+++++|.+.|.+.+.. .+...
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a 184 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPG 184 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHH
Confidence 3344444444444 45555555555555443 2 33344444444544 55555555555444432 12344
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 009782 462 WGALLYACYL----HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVERMLVDRG 523 (526)
Q Consensus 462 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 523 (526)
+..+...|.. .+++++|+..++++.+..| +.++..++.+|.. .|++++|.+.+++..+.|
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4445555555 5555555555555555443 3345555555555 555555555555554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-12 Score=122.42 Aligned_cols=131 Identities=10% Similarity=0.049 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCChHHH-----HHHHHhhcCCCCCH-HH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-AGLIDEA-----YSMIVEKMEFEASP-VV 461 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~p~~-~~ 461 (526)
+...|..+..++...|++++|+..++++.+. -+-+...|+.+..+|.+ .|..++| ++.|.+++...|+. ..
T Consensus 199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a 276 (382)
T 2h6f_A 199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 3456666777777778888888888888764 23367777888888877 5555777 47777888888854 77
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC---------ChHHHHHHHHHH-HhC
Q 009782 462 WGALLYACYLHG--NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG---------RLDDVERVERML-VDR 522 (526)
Q Consensus 462 ~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~ 522 (526)
|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.| .+++|.++++++ .+.
T Consensus 277 ~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 277 WNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 888888888877 688899988888 888999999999999998874 258899999988 543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-12 Score=112.61 Aligned_cols=195 Identities=13% Similarity=0.008 Sum_probs=150.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ---KDVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
...+..+...+...|++++|...|+++.+ .+...+..+... .++.++|...+++..+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555666666777777777776665543 223334333333 466677777777776632 23566888889999
Q ss_pred hcc-CCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 009782 401 AHL-GSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 401 ~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 477 (526)
... |++++|...++.+.+. +..| +...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 999 9999999999999862 3444 4677888999999999999999999888877775 5788889999999999999
Q ss_pred HHHHHHHHHccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 478 GETAAQKLFELEP-DNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 478 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|...++++++..| .+...+..++..+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999 888889889999999999999999999886543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-13 Score=118.80 Aligned_cols=195 Identities=9% Similarity=0.032 Sum_probs=146.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
....+..+...+...|++++|...|+++.+ | +...+..+... .++.++|...+++..+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677777788888888877776654 2 33344433333 577788888888877742 2356788899999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 478 (526)
+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999875 3447788899999999999999999999888877774 58888999999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 479 ETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+..++++++..|.+..++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-12 Score=121.84 Aligned_cols=234 Identities=12% Similarity=-0.023 Sum_probs=161.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCc-HHHHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPD-PVAISSILA 303 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll~ 303 (526)
....+...|++++|...|++..+ ++ ..++..+...|...|++++|...+.+..+.-. .++ ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI------- 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-------
Confidence 55567788888888888877654 22 25678888888999999999988887765310 011 00
Q ss_pred HhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHH
Q 009782 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383 (526)
Q Consensus 304 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~ 383 (526)
....+++.+..+|...|++++|...|++. +++....
T Consensus 182 ---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------l~~~~~~-- 217 (383)
T 3ulq_A 182 ---------------------RLLQCHSLFATNFLDLKQYEDAISHFQKA---------------------YSMAEAE-- 217 (383)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHT--
T ss_pred ---------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHc--
Confidence 01345677888999999999999888743 2332221
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CC-CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC---
Q 009782 384 DGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GI-SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--- 455 (526)
Q Consensus 384 ~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 455 (526)
+-.+ ...++..+...|...|++++|.+.+++..+.. +. +....++..+...|.+.|++++|.+.+.+.+..
T Consensus 218 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 218 -KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1111 12367778888888999999998888877621 12 224667788888899999999999888766643
Q ss_pred --CCCH-HHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 456 --EASP-VVWGALLYACYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 456 --~p~~-~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.|.. ..+..+...+...|+ +++|+..+++. ...|....++..++.+|...|++++|.+.+++..+
T Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2222 335667777788888 77777777765 23344455678889999999999999998888754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-12 Score=109.44 Aligned_cols=198 Identities=11% Similarity=-0.060 Sum_probs=160.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISG 168 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~ 168 (526)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|++.....|+ ..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 56677788888889999999999999988865 556778888899999999999999999988766553 3678888889
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 009782 169 YAEL-GEYEDAIALYFQMEEEGVEPD-QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIV 246 (526)
Q Consensus 169 ~~~~-~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 246 (526)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999887322333 4567788888889999999999999988775 445778888889999999999
Q ss_pred HHHHHHhhcCC----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 247 KARTVFDRIGN----KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 247 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
+|...++++.+ .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999887653 45566777777888899999999988888754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=125.71 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=164.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhHHHH
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKACAGLGLIRVGEKVHLDAVRFG-----FGFDGFVLNA 234 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~ 234 (526)
+...+...|++++|+..|++..+.+ |+. ..+..+...+...|++++|...+++..+.. .+.....+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3334444455555555554444431 221 234444444445555555555554443321 0122344555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---------CcccHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGNK---------DLISYNSMLTGYIHHGL-----------------LVEAFDIFRGMIL 288 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~ 288 (526)
+...|...|++++|...|++..+- ...++..+...|...|+ +++|.+.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 555666666666666655544320 12355666666777777 5666655555432
Q ss_pred cCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC-CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh
Q 009782 289 NGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA 367 (526)
Q Consensus 289 ~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 367 (526)
. ... .+. ......+..+...|...|++++|...+++..
T Consensus 212 ~-------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------- 250 (411)
T 4a1s_A 212 L-------------------------MRD---LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL------------- 250 (411)
T ss_dssp H-------------------------HHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred H-------------------------HHH---cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------
Confidence 1 000 000 0123456778889999999999999887433
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCChH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAGLID 443 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~ 443 (526)
++..... .......++..+...+...|++++|...++++.+...-.. ....+..+...|...|+++
T Consensus 251 --------~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 251 --------RIAREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp --------HHHHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --------HHHHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2222210 0001123778888899999999999999998876421111 2567788999999999999
Q ss_pred HHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 444 EAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
+|.+.+.+.+...++ ..++..+...+...|++++|.+.+++++++.+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999766643221 257788889999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-12 Score=120.74 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=169.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CCchhHHH
Q 009782 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKACAGLGLIRVGEKVHLDAVRF----GF-GFDGFVLN 233 (526)
Q Consensus 164 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~ 233 (526)
.....+...|++++|...|++..+.. |+. ..+..+...+...|++++|.+.+++..+. +. +....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445555666666666666665542 222 34555555666666666666666655432 11 11234555
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCC--------------------hHHHHHHHH
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGL--------------------LVEAFDIFR 284 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~ 284 (526)
.+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666666777776666655432 11 1255556666666666 555555555
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC-CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHH
Q 009782 285 GMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS 363 (526)
Q Consensus 285 ~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 363 (526)
+.... . ...+. ......+..+...+...|++++|...+++..
T Consensus 168 ~a~~~-------------------------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------- 210 (338)
T 3ro2_A 168 ENLSL-------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL--------- 210 (338)
T ss_dssp HHHHH-------------------------H---HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------
T ss_pred HHHHH-------------------------H---HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------
Confidence 44321 0 00010 1123456677888999999999998887432
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhc
Q 009782 364 IIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRA 439 (526)
Q Consensus 364 li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 439 (526)
++..... .......++..+...+...|++++|...+++..+...-.++ ..++..+...|...
T Consensus 211 ------------~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 211 ------------LIAKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp ------------HHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 2222210 00111337788888899999999999999988754211112 56778889999999
Q ss_pred CChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 440 GLIDEAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 440 g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
|++++|...+.+.+...+. ..++..+...+...|++++|...+++++++.+.
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999666643221 257788889999999999999999999987654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=120.56 Aligned_cols=342 Identities=11% Similarity=-0.012 Sum_probs=227.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI---RVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 346677888999999999999998876 344555666777778888 8999999988854 445566666655
Q ss_pred HhcC-----CHHHHHHHHhhcCCC-CcccHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHH
Q 009782 240 AKCG-----DIVKARTVFDRIGNK-DLISYNSMLTGYIHHGLLV---EAFDIFRGMILNGFDPDPVAISSILANASLLRI 310 (526)
Q Consensus 240 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 310 (526)
...| +.++|.+.|++..++ +...+..|...|...+..+ ++.+.+......|.......+..+...-+.++.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 5555 789999999887654 5568888888888876544 455566666666654444444444433344444
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---ChHHHHHHhccCCC---CChhHHHHHHHhc-------CCchHHHHH
Q 009782 311 GAQVHGWVLRRGVEWDLCIANSLIVVYSKDG---KLDQACWLFDHMPQ---KDVVSWNSIIHAH-------SKDHEALIY 377 (526)
Q Consensus 311 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~-------~~~~~a~~~ 377 (526)
+......+.+.....++..+..+...|...| +.++|+..|++..+ ++...+..+-..+ .+.++|..+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4443444444434445558888999999999 99999999987754 3333323333332 456899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-----ChHHHHHHH
Q 009782 378 FEQMERDGVLPDHLTFVSLLSA-C--AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG-----LIDEAYSMI 449 (526)
Q Consensus 378 ~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~ 449 (526)
|++.. .| +...+..|... + ...++.++|.+.|++..+. | +...+..|...|. .| ++++|.+.|
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99987 33 34455555555 3 5689999999999999875 4 6677778888887 55 999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 009782 450 VEKMEFEASPVVWGALLYACYL----HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVERMLVD 521 (526)
Q Consensus 450 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 521 (526)
.++. ..++..+..|...|.. ..+.++|...|+++.+. .++.+...|+.+|.. ..+.++|...+++..+
T Consensus 311 ~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 311 EKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7777 5566788888877776 34999999999998875 456678999999986 5589999999999988
Q ss_pred CCC
Q 009782 522 RGL 524 (526)
Q Consensus 522 ~g~ 524 (526)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-12 Score=117.71 Aligned_cols=127 Identities=9% Similarity=-0.092 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-IRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
..|+.+...+.+.|++++|++.+++..+.. +-+...|+.+..++...|+ +++|+..++++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 446666666666677777777777666542 2233455666666666664 666666666666654 3345555555555
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 239 YAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+...|++++|+..|+++.+ .+...|..+..++.+.|++++|+..++++++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5555555555555554432 2334555555555555566666666655554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-09 Score=109.74 Aligned_cols=414 Identities=10% Similarity=0.034 Sum_probs=238.6
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCC---hhHHHHHHhc
Q 009782 75 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL---IDEAHQVFDQ 151 (526)
Q Consensus 75 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~ 151 (526)
.+..++..+...+ -|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+..+|++
T Consensus 51 ~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444455555554 39999999999999999999999999999987 47788899999999888888 9999999999
Q ss_pred cccCC---CCcccHHHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCCc-chHHHHHHHHh---------ccC
Q 009782 152 MSNRT---AFAFPWNSLISGYAELGEY--------EDAIALYFQMEE-EGV-EPDQ-FTFPRVLKACA---------GLG 208 (526)
Q Consensus 152 ~~~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~t~~~ll~~~~---------~~g 208 (526)
..... +++..|...+....+.++. +...++|+.... .|. .|+. ..|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 88776 6667788877766665554 334477776554 365 5544 45666665433 234
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHH---HHHHHH----------hcCCHHHHHHHHhhc-------CC--CC-------
Q 009782 209 LIRVGEKVHLDAVRFGFGFDGFVLNA---LVDMYA----------KCGDIVKARTVFDRI-------GN--KD------- 259 (526)
Q Consensus 209 ~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~----------~~g~~~~A~~~~~~~-------~~--~~------- 259 (526)
+++.+.++|+.++......-..+|.. +...+. ...+++.|...+.++ .+ |.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 56788889988875322212233322 211110 011233344444331 11 00
Q ss_pred -------------cccHHHHHHHHHhCC-------ChHHHHHHHHHHHHcC-CCCcH-HHHHHHHHHhhhhHHHH-HHHH
Q 009782 260 -------------LISYNSMLTGYIHHG-------LLVEAFDIFRGMILNG-FDPDP-VAISSILANASLLRIGA-QVHG 316 (526)
Q Consensus 260 -------------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~-~~p~~-~~~~~ll~~~~~~~~a~-~~~~ 316 (526)
...|...+..--..+ ..+.+..+|++.+... ..|+. ..|..++...|+.+.|. .+++
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 012333333222221 0122344566555531 11111 12233333336666775 7777
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC-------------CC------------hhHHHHHHHh---c
Q 009782 317 WVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ-------------KD------------VVSWNSIIHA---H 368 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~---~ 368 (526)
..... .+.+...+-..+....+.|++++|..+|+.+.+ |+ ...|...+.. .
T Consensus 369 rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 77653 344566666777777778888888888776653 11 1123333332 3
Q ss_pred CCchHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 009782 369 SKDHEALIYFEQMERD-G-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAY 446 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 446 (526)
+..+.|..+|.+..+. + ..+......+.+.-.+ .++.+.|..+|+...+. ++-+...+...++.....|+.+.|.
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 4456677777776654 1 1122222222222111 24467777777777664 2234445556666666667777777
Q ss_pred HHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 447 SMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 447 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
.+|++++...|+ ...|...+..-.+.|+.+.+.++.+++.+..|+++.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 777666665552 255666666666677777777777777777766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=128.64 Aligned_cols=190 Identities=11% Similarity=0.006 Sum_probs=152.5
Q ss_pred chhHHhHHHHHHHhcCCh-HHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKL-DQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLS 398 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 398 (526)
+...+..+..+|...|++ ++|++.|++..+ | +...|..+-.. .|++++|...|++..+ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 445555666666666666 666666665543 2 23344433333 4666677777777776 4677788999999
Q ss_pred HHhcc---------CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc--------CChHHHHHHHHhhcCCCC----
Q 009782 399 ACAHL---------GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA--------GLIDEAYSMIVEKMEFEA---- 457 (526)
Q Consensus 399 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p---- 457 (526)
.+... |++++|.+.++++.+. .+.+...|..+..+|... |++++|++.|.+++...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999875 334688899999999998 999999999988888888
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
+...|..+...|...|++++|++.+++++++.|++..++..+..++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55889999999999999999999999999999999999999999999999999999765543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-11 Score=107.86 Aligned_cols=191 Identities=15% Similarity=0.068 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cCChhHHHHHHhccccCCCCcccHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FGLIDEAHQVFDQMSNRTAFAFPWNSL 165 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l 165 (526)
++.++..+-..+...|++++|.+.|+...+. .+...+..+...|.. .+++++|...|++..+.+ ++.++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 4556666677777778888888888877773 345667777777777 788888888888776554 34667777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 009782 166 ISGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLDAVRFGFGFDGFVLNALVD 237 (526)
Q Consensus 166 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 237 (526)
...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777 788888888888877754 55667777777777 788888888888877765 4556666777
Q ss_pred HHHh----cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 009782 238 MYAK----CGDIVKARTVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 238 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 290 (526)
.|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 7776 7788888888776654 345566777777777 778888888887777653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=114.35 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=129.9
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 009782 261 ISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD 340 (526)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (526)
.++..+...+...|++++|..+++++.+.. ........+.....+..+...|...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------------------------~~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDL-------------------------EKTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------HHHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------HHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 466777788888888888888888776520 0000000111234567788889999
Q ss_pred CChHHHHHHhccCCC-------C-C---hhHHHHHHHh---cCCchHHHHHHHHHHHC------CCCCC-HHHHHHHHHH
Q 009782 341 GKLDQACWLFDHMPQ-------K-D---VVSWNSIIHA---HSKDHEALIYFEQMERD------GVLPD-HLTFVSLLSA 399 (526)
Q Consensus 341 g~~~~A~~~~~~~~~-------~-~---~~~~~~li~~---~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~ 399 (526)
|++++|...+++..+ + + ...+..+... .+++++|...+++..+. +-.|+ ...+..+...
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999988876542 0 1 1122222222 35556666666665542 12222 2345556666
Q ss_pred HhccCCHHHHHHHHHHHHHhc-----CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---------CCCH-----
Q 009782 400 CAHLGSVKVGERLFSVMVEKY-----GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---------EASP----- 459 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p~~----- 459 (526)
+...|++++|.++++++.+.. +..| ....+..+...|...|++++|.+.+.+.+.. .+..
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 666666666666666665421 0012 2345556666666666666666666444421 1111
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 460 --VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 460 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+..+...+...+.+.++...++.+....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122222233344445555555555556677788899999999999999999999998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=129.92 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=144.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLG 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 404 (526)
+...++.+..+|.+.|++++|++.|++.. + +.|+ ...+..+..++.+.|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl----------------------------~--l~P~~~~a~~nLg~~l~~~g 57 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKAL----------------------------E--VFPEFAAAHSNLASVLQQQG 57 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------H--HCSCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------H--hCCCCHHHHHHHHHHHHHcC
Confidence 35677888888888888888888777433 2 3454 568899999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAA 482 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 482 (526)
++++|++.|+++.+. .| +...|..+..+|.+.|++++|++.|.+++..+|+. ..|..+...+...|++++|++.|
T Consensus 58 ~~~eA~~~~~~Al~l---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 58 KLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999874 45 58899999999999999999999999999999964 89999999999999999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 483 QKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+++++++|+++.++..++.+|...|++++|.+.++++.+
T Consensus 135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-11 Score=101.29 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=137.3
Q ss_pred hHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 009782 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK 407 (526)
Q Consensus 328 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 407 (526)
..+..+...+...|++++|...++++.+.+ +.+...+..+...+...|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 59 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----------------------------AFDVDVALHLGIAYVKTGAVD 59 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----------------------------SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------------ccChHHHHHHHHHHHHcCCHH
Confidence 455677888999999999999999877421 224567788888888999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
+|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...| +...+..+...+...|++++|...+++++
T Consensus 60 ~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 60 RGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 999999998874 344677888889999999999999999977777666 45778888889999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 487 ELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 487 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..|.++.++..++.+|...|++++|.+.++++.+
T Consensus 138 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 138 GLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=120.79 Aligned_cols=211 Identities=9% Similarity=-0.054 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 009782 70 QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAV-EHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQV 148 (526)
Q Consensus 70 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 148 (526)
+.+++++..++....... .+...+..+..++...|++ ++|.+.|+...+.. +.+...+..+...|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 335555555555443322 2455555555666666666 66666666666543 33455666666666666666666666
Q ss_pred HhccccCCCCcccHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc--------CChH
Q 009782 149 FDQMSNRTAFAFPWNSLISGYAEL---------GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL--------GLIR 211 (526)
Q Consensus 149 ~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------g~~~ 211 (526)
|++....+|+...|..+...+... |++++|+..|++..+.. +-+...|..+..++... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666655555545555556666665 66666666666665542 22344555555555555 5666
Q ss_pred HHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHH
Q 009782 212 VGEKVHLDAVRFGFG--FDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIF 283 (526)
Q Consensus 212 ~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 283 (526)
+|.+.|++..+.... .+...|..+..+|...|++++|.+.|++..+ .+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666554310 3455556666666666666666666655432 23344555555555555555555544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-09 Score=107.32 Aligned_cols=413 Identities=9% Similarity=-0.017 Sum_probs=276.9
Q ss_pred hHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCc-ccHHHHHHHHHhcCC---hHHHHHHH
Q 009782 107 VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFA-FPWNSLISGYAELGE---YEDAIALY 182 (526)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~---~~~a~~~~ 182 (526)
..+....++..+... +.|...|..++..+.+.+.++.+..+|+++...-|.. ..|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455556666555 6799999999999999999999999999998876643 568888888888888 99999999
Q ss_pred HHHHHcC-CCCCcchHHHHHHHHhccCCh--------HHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHH---------h
Q 009782 183 FQMEEEG-VEPDQFTFPRVLKACAGLGLI--------RVGEKVHLDAVR-FGF-GFD-GFVLNALVDMYA---------K 241 (526)
Q Consensus 183 ~~m~~~~-~~p~~~t~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~---------~ 241 (526)
++..... ..|+...|..-+....+.++. +.+.++|+.... .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 137877777777655554443 344577776654 466 554 467777776543 2
Q ss_pred cCCHHHHHHHHhhcCC-CCc---ccHH---HHHHHH----------HhCCChHHHHHHHHHHHHc--CCC----------
Q 009782 242 CGDIVKARTVFDRIGN-KDL---ISYN---SMLTGY----------IHHGLLVEAFDIFRGMILN--GFD---------- 292 (526)
Q Consensus 242 ~g~~~~A~~~~~~~~~-~~~---~~~~---~li~~~----------~~~g~~~~a~~~~~~m~~~--~~~---------- 292 (526)
.++++.+.++|++... |.. .+|. .+...+ -...+++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457889999988875 211 1222 111111 0012334455555544321 221
Q ss_pred -----C-----cHH---HHHHHHHHh-h---------hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH-H
Q 009782 293 -----P-----DPV---AISSILANA-S---------LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC-W 348 (526)
Q Consensus 293 -----p-----~~~---~~~~ll~~~-~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 348 (526)
| +.. .|...+.-- . ..+.+..++++.+..- +....+|-..+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 111 122222111 1 1234556777777653 447788888888899999999996 9
Q ss_pred HhccCCC--CCh-hHHH---HHHHhcCCchHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHh
Q 009782 349 LFDHMPQ--KDV-VSWN---SIIHAHSKDHEALIYFEQMERDG---------VLPD------------HLTFVSLLSACA 401 (526)
Q Consensus 349 ~~~~~~~--~~~-~~~~---~li~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~ 401 (526)
+|+.... |.. ..|- .+....++.++|.++|+.+.... -.|+ ...|...++...
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9987764 433 2232 23333788999999999987631 0142 236888888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc-CChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA-GLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 479 (526)
+.|+.+.|..+|..+.+. .-.+....|...+..-.+. ++.+.|..+|.+.+...|+ ...|...+......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 889999999999999864 0111233443333333344 4589999999888877774 466678888888899999999
Q ss_pred HHHHHHHccCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 480 TAAQKLFELEPD---NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 480 ~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999998873 4566888888888999999999999999764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.5e-12 Score=116.90 Aligned_cols=257 Identities=14% Similarity=0.075 Sum_probs=142.2
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEE-------GVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVL 232 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 232 (526)
.++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++++.+..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 44666666666667777777666666542 111122344445555555555555555555444321
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhc--C--CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 233 NALVDMYAKCGDIVKARTVFDRI--G--NKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
+.. . .....++..+...|...|++++|...+++..+..
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------ 141 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------------ 141 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH------------------
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH------------------
Confidence 000 0 0012345566666677777777777776655420
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 009782 309 RIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP 388 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p 388 (526)
........+.....+..+...|...|++++|...++++. ++++.... +..|
T Consensus 142 -------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~---------------------~~~~~~~~-~~~~ 192 (311)
T 3nf1_A 142 -------EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL---------------------EIYQTKLG-PDDP 192 (311)
T ss_dssp -------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------------------HHHHHTSC-TTCH
T ss_pred -------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HHHHHHhC-CCCH
Confidence 000000001123456678888999999999998887432 22222110 1123
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc------CCCCc-------hhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 389 D-HLTFVSLLSACAHLGSVKVGERLFSVMVEKY------GISPR-------VEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 389 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+ ..++..+...+...|++++|.+.++++.+.. ...+. ...+..+...+...+.+.+|...+.+...
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 2 3478888999999999999999999988631 11111 12223333344455666667777755555
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 455 FEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 455 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..|+. .++..+...|...|++++|.+.+++++++.|.
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 56644 78899999999999999999999999987764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=107.12 Aligned_cols=214 Identities=8% Similarity=0.020 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHH-------ccCCh-------HHHHHHHHHHhhhccCCChhHHHHHHHHHHh
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCY-------QLKAV-------EHGIKLHRLIPTNLLRKNKGISSKLLRLYAT 138 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 138 (526)
++|+..+++.....+. ++..|......+. +.|++ ++|..+|+...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6888888888876433 6777777777665 35776 8899999998883225566788999999999
Q ss_pred cCChhHHHHHHhccccCCCCc-c-cHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH-hccCChHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNRTAFA-F-PWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC-AGLGLIRVGEK 215 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~~~~~-~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~g~~~~a~~ 215 (526)
.|++++|..+|++.....|.. . .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988776643 3 78888999999999999999999988753 23334444333222 23689999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 216 VHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-------DLISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.... ....|..++..+.+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888764 446778888888888899999999999877541 234678888888888999999988888876
Q ss_pred c
Q 009782 289 N 289 (526)
Q Consensus 289 ~ 289 (526)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-11 Score=112.85 Aligned_cols=235 Identities=11% Similarity=0.012 Sum_probs=155.2
Q ss_pred HHHhccCChHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----cccHHHH
Q 009782 202 KACAGLGLIRVGEKVHLDAVRF----GFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD-----LISYNSM 266 (526)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 266 (526)
..+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555566665555555442 1011 224555566666666666666666554432 11 2467777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 267 LTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
...|...|++++|...+++..+... .++... ...++..+..+|...|++++
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL----------------------------MGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH----------------------------HHHHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887765310 011111 12355678889999999999
Q ss_pred HHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC---
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYG--- 421 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 421 (526)
|...+++ |+++.+ ..+..|+ ..++..+...+...|++++|...+++..+...
T Consensus 243 A~~~~~~---------------------al~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 243 AIPYFKR---------------------AIAVFE---ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp HHHHHHH---------------------HHHHHH---HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH---------------------HHHHHH---hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 9988874 333322 2223233 45788899999999999999999998876411
Q ss_pred CCCchhHHHHHHHHHHhcCC---hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 422 ISPRVEHYACMVNLYGRAGL---IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 422 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
-+.....+..+...|...|+ +++|+.++ +..+..|+. ..+..+...|...|++++|...+++++++.
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL-ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11123345778888999999 89999999 555555544 677888999999999999999999998743
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-09 Score=103.95 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=121.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCC--C-chhHHhHHHHHHHh
Q 009782 263 YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVE--W-DLCIANSLIVVYSK 339 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~ 339 (526)
+..+...+...|++++|...+++..... ...+.. | ....+..+...+..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLI----------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 4556667777888888888777765421 001111 1 12344567778888
Q ss_pred cCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 340 DGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
.|++++|...+++..+ +. ...|......++..+...+...|++++|...+++....
T Consensus 148 ~g~~~~A~~~~~~al~---------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 148 WARLDEAEASARSGIE---------------------VL---SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp TTCHHHHHHHHHHHHH---------------------HT---TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH---------------------Hh---hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999988888775331 00 00111112345666677777778888888877777653
Q ss_pred cCCCCchhHHH-----HHHHHHHhcCChHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 420 YGISPRVEHYA-----CMVNLYGRAGLIDEAYSMIVEKMEFEAS-----PVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 420 ~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
..-......+. ..+..+...|++++|...+.+.....|. ...+..+...+...|++++|...++++.+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 204 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11111111111 2234466778888888877666554432 1244566667777788888888877776643
Q ss_pred CC-----C-cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 490 PD-----N-EHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 490 p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+. + ..++..++.+|...|++++|.+.+++..
T Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 284 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 21 1 1245666777778888888877777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.2e-11 Score=111.54 Aligned_cols=235 Identities=9% Similarity=-0.030 Sum_probs=160.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCc-HHHHHHHH
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPD-PVAISSIL 302 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll 302 (526)
.....+...|++++|...|++..+ ++ ..++..+...|...|+++.|...+.+..+... .++ ..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------ 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh------
Confidence 344556678888888888876653 22 24677788888889999999888887765310 010 00
Q ss_pred HHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHH
Q 009782 303 ANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQME 382 (526)
Q Consensus 303 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~ 382 (526)
....+++.+..+|...|++++|...|++. +++.+..
T Consensus 180 ----------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~a---------------------l~~~~~~- 215 (378)
T 3q15_A 180 ----------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAA---------------------LELAMDI- 215 (378)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHT-
T ss_pred ----------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------HHHHHHc-
Confidence 01345677888999999999999888743 3333221
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC---
Q 009782 383 RDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--- 455 (526)
Q Consensus 383 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 455 (526)
+-.+ ...++..+...+...|++++|.+.+++..+.. +.+....++..+...|.+.|++++|.+.+.+.+..
T Consensus 216 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 216 --QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred --CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1111 23467788888889999999999998887621 12223667788888999999999999999666632
Q ss_pred --CCCH-HHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 456 --EASP-VVWGALLYACYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 456 --~p~~-~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.|.. ..+..+...+...|+ +.+|+..+++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2222 445555566667777 77777777762 22233445677899999999999999999888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=98.30 Aligned_cols=161 Identities=16% Similarity=0.087 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009782 126 KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 204 (526)
Q Consensus 126 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 204 (526)
..+|..+...|...|++++|++.|++..+.+|+ +.+|..+...+.+.|++++|+..+....... +-+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 344555555555555555555555555444432 2445555555555555555555555554432 12233444444455
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHH
Q 009782 205 AGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFD 281 (526)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 281 (526)
...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|.+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555555443 33444555555666666666666666655432 234456666666666666666666
Q ss_pred HHHHHHH
Q 009782 282 IFRGMIL 288 (526)
Q Consensus 282 ~~~~m~~ 288 (526)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-10 Score=106.38 Aligned_cols=232 Identities=9% Similarity=-0.087 Sum_probs=153.8
Q ss_pred HhccCChHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----cccHHHHHH
Q 009782 204 CAGLGLIRVGEKVHLDAVRFGF-GF----DGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD-----LISYNSMLT 268 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 268 (526)
+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4455666666666665554311 01 123555666666666766666666654432 11 235677788
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH
Q 009782 269 GYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQAC 347 (526)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 347 (526)
.|...|++++|.+.+++..+..- .++... ...++..+..+|...|++++|.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRF----------------------------IAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------HHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888877665210 011110 1235567888999999999999
Q ss_pred HHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---
Q 009782 348 WLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP--- 424 (526)
Q Consensus 348 ~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--- 424 (526)
..+++ |+++++.. +.+....++..+...+.+.|++++|...+++..+...-.+
T Consensus 243 ~~~~~---------------------al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 243 EHFQK---------------------AAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHH---------------------HHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHH---------------------HHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 98874 33333332 2222356788899999999999999999999987522211
Q ss_pred chhHHHHHHHHHHhcCC---hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 425 RVEHYACMVNLYGRAGL---IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
....+..+...|...|+ +.+|+..+ +..+..|+. ..+..+...|...|++++|...++++++.
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23456667777778888 89999998 555544544 66778889999999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-11 Score=107.39 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=97.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCC--------C---hhHHHHHHHh---cCCchHHHHHHHHHHHC------C
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQK--------D---VVSWNSIIHA---HSKDHEALIYFEQMERD------G 385 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~---~~~~~~a~~~~~~m~~~------~ 385 (526)
...++..+..+|...|++++|...++++.+. + ..++..+... .++.++|...+++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4566788899999999999999988765420 0 1112222211 34445555555554432 0
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-----CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---
Q 009782 386 VLPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKY-----GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--- 455 (526)
Q Consensus 386 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 455 (526)
-.|+ ..++..+...+...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.+.+.+..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0121 2344445555555555555555555544320 0011 2334444555555555555555555333311
Q ss_pred ------CCCH-HHHHHHHHHHHhcCC------hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 456 ------EASP-VVWGALLYACYLHGN------VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 456 ------~p~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.+.. ..+..+...+...+. +..+...++......|....++..++.+|...|++++|.+++++..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1211 222222222222111 111111111111123445567889999999999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-10 Score=103.00 Aligned_cols=164 Identities=8% Similarity=0.058 Sum_probs=92.6
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCC--CC-hh-HHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQ--KD-VV-SWNSIIHA---HSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
...|..++..+.+.|++++|..+|+++.+ |+ .. .|..+... .|+.++|..+|++..+.+ +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34455556666666666666666655443 21 11 23322222 344455555555555432 1223333332222
Q ss_pred H-hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC---CCC--HHHHHHHHHHHHhcC
Q 009782 400 C-AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EAS--PVVWGALLYACYLHG 473 (526)
Q Consensus 400 ~-~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g 473 (526)
. ...|+.++|..+|+.+.+. .+-+...|..++..+.+.|++++|..+|.+.+.. .|+ ...|..++....+.|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 1257777777777777664 2235666677777777777777777777666653 332 356666677777777
Q ss_pred ChHHHHHHHHHHHccCCCCc
Q 009782 474 NVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~ 493 (526)
+.+.|..+++++++..|++.
T Consensus 256 ~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHHccccc
Confidence 77777777777777777644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-10 Score=100.46 Aligned_cols=168 Identities=11% Similarity=-0.015 Sum_probs=105.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS 405 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 405 (526)
++..+......+...|++++|...|++.. +....++...+..+..++...|+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 57 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYL----------------------------KLTNNQDSVTAYNCGVCADNIKK 57 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------HHTTTCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------------------hccCCCCcHHHHHHHHHHHHhhc
Confidence 44566667777888888888777776543 22112444555556666666666
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--------HHHHHHHHHHHhcCChHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--------VVWGALLYACYLHGNVCM 477 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~ 477 (526)
+++|.+.+++..+. .+.+...+..+...|...|++++|++.+.+.+...|+. ..|..+...+...|++++
T Consensus 58 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 58 YKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 66666666666542 22245556666666666666666666666666555532 235555556666666666
Q ss_pred HHHHHHHHHccCCC--CcchHHHHHHHHHhcCCh---------------------------HHHHHHHHHHHhCC
Q 009782 478 GETAAQKLFELEPD--NEHNFELLIKIYGNAGRL---------------------------DDVERVERMLVDRG 523 (526)
Q Consensus 478 a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~~~m~~~g 523 (526)
|++.+++++++.|+ ++.++..++.+|...|+. ++|...+++..+..
T Consensus 136 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 136 AEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 66666666666666 666666666666666665 88999998887644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-10 Score=102.64 Aligned_cols=214 Identities=12% Similarity=0.000 Sum_probs=140.3
Q ss_pred CHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCC
Q 009782 244 DIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGV 323 (526)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 323 (526)
++++|...|++. ...|...|++++|...|.+..+.. .+.+.
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~ 72 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQ----------------------------KKAGN 72 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHH----------------------------HHTTC
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHH----------------------------HHhCC
Confidence 367777666553 456677788888888777665420 00010
Q ss_pred CC-chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 009782 324 EW-DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACA 401 (526)
Q Consensus 324 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 401 (526)
.+ ...+++.+..+|.+.|++++|+..|++. ++++.+. |-.. -..++..+...|.
T Consensus 73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A---------------------l~l~~~~---g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENA---------------------IQIFTHR---GQFRRGANFKFELGEILE 128 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------HHHHHHc---CCHHHHHHHHHHHHHHHH
Confidence 01 1345677888888999999988888743 3333221 1111 1346777888888
Q ss_pred cc-CCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH--------HHHHHHHH
Q 009782 402 HL-GSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV--------VWGALLYA 468 (526)
Q Consensus 402 ~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~~~l~~~ 468 (526)
.. |++++|...+++..+...-..+ ..++..+...|.+.|++++|+..|.+.+...|+.. .+..+..+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 85 9999999999988764211111 35678888899999999999999977776666431 46777788
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcch-----HHHHHHHHH--hcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHN-----FELLIKIYG--NAGRLDDVERVERMLV 520 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 520 (526)
+...|++++|+..+++++++.|....+ +..++.+|. ..+++++|.+.|+++.
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888999999999999999988875543 344566665 4567888888886653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-10 Score=97.54 Aligned_cols=101 Identities=6% Similarity=0.093 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPR---VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYA 468 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 468 (526)
|..+...+...|++++|.+.++++.+ +.|+ ...+..+...|...|+. .+.+.....+ +...+....
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-- 189 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK-- 189 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--
Confidence 44455555555666666666665553 2333 34444555555443322 1111111111 122222211
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 22334459999999999999999988777776654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=91.52 Aligned_cols=161 Identities=12% Similarity=-0.017 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 009782 127 GISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 205 (526)
Q Consensus 127 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 205 (526)
..+..+...+...|++++|...|+++....|. ...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44556666777777777777777777666543 3556777777777788888888877776652 334556667777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHH
Q 009782 206 GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDI 282 (526)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 282 (526)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888887777664 44566777777777888888888887776643 3456777777888888888888888
Q ss_pred HHHHHHc
Q 009782 283 FRGMILN 289 (526)
Q Consensus 283 ~~~m~~~ 289 (526)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8777653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-10 Score=88.84 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=115.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...+.+.+...|+ ...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788889999999999999999875 2346778888999999999999999999777776664 577888899999
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
..|++++|.+.++++++..|.+..++..++.+|...|++++|.+.++++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999876543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-10 Score=116.13 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=123.2
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHH
Q 009782 387 LPD-HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWG 463 (526)
Q Consensus 387 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~ 463 (526)
.|+ ...|+.|...+.+.|++++|++.|+++.+. .| +...|..+..+|.+.|++++|++.|.+++...|+. ..|.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 455 458999999999999999999999999974 45 58899999999999999999999999999999964 8999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+..++...|++++|++.|+++++++|++..+|..++.+|.+.|++++|.+.|++..+..
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-08 Score=96.43 Aligned_cols=258 Identities=10% Similarity=-0.068 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHhhhcc-CCCh----hHHHHHHHHHHh
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTE----TFASLLETCYQLKAVEHGIKLHRLIPTNLL-RKNK----GISSKLLRLYAT 138 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~ 138 (526)
..|++++|...++.........+.. .+..+...+...|+++.|.+.++...+... ..+. .++..+...+..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4677888888888877654332322 345555667778888888888887765321 1121 235566777788
Q ss_pred cCChhHHHHHHhccccC-----C---CC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CcchHHHHHHHHh
Q 009782 139 FGLIDEAHQVFDQMSNR-----T---AF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEP----DQFTFPRVLKACA 205 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~-----~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~ll~~~~ 205 (526)
.|++++|...+++.... + +. ...+..+...+...|++++|...+++........ ...++..+...+.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 88888888888776432 1 11 1345667777888888888888888876542211 1235666777788
Q ss_pred ccCChHHHHHHHHHHHHhCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHhhcCCCCc-------ccHHHHHHHHHh
Q 009782 206 GLGLIRVGEKVHLDAVRFGFGFD--GFVLN----ALVDMYAKCGDIVKARTVFDRIGNKDL-------ISYNSMLTGYIH 272 (526)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~g~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~ 272 (526)
..|++++|...+++.....-.++ ..... ..+..+...|++++|...+++....+. ..+..+...+..
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 88888888888888776422221 11111 233446788888888888888765432 134566777888
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCch-hHHhHHHHHHHhcCChHHHHHHhc
Q 009782 273 HGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDL-CIANSLIVVYSKDGKLDQACWLFD 351 (526)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 351 (526)
.|++++|...+++...... ..+..++. ..+..+..++...|+.++|...++
T Consensus 266 ~g~~~~A~~~l~~a~~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENAR----------------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH----------------------------hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888877654210 00101111 234456677888888888888877
Q ss_pred cC
Q 009782 352 HM 353 (526)
Q Consensus 352 ~~ 353 (526)
+.
T Consensus 318 ~a 319 (373)
T 1hz4_A 318 DA 319 (373)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-10 Score=101.46 Aligned_cols=223 Identities=13% Similarity=-0.001 Sum_probs=160.3
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhh------cc-CCChhHHHHHHHHHHh
Q 009782 66 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN------LL-RKNKGISSKLLRLYAT 138 (526)
Q Consensus 66 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~ 138 (526)
......+++|+++++.......+....++..+...+...|++++|.+.++...+. +- +....++..+...+..
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 3456778889988888876554446778889999999999999999999988764 11 2345678889999999
Q ss_pred cCChhHHHHHHhccccC--------CCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CcchHHHHHH
Q 009782 139 FGLIDEAHQVFDQMSNR--------TAF-AFPWNSLISGYAELGEYEDAIALYFQMEEE------GVEP-DQFTFPRVLK 202 (526)
Q Consensus 139 ~g~~~~a~~~~~~~~~~--------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~t~~~ll~ 202 (526)
.|++++|.+.|++.... +|. ..+|..+...+...|++++|+..+++..+. +-.| ...++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999987543 222 367888999999999999999999998764 1122 2457888889
Q ss_pred HHhccCChHHHHHHHHHHHHhC-------CCCc-hhHHHHHHHHHHhcC------CHHHHHHHHhhcCCCC---cccHHH
Q 009782 203 ACAGLGLIRVGEKVHLDAVRFG-------FGFD-GFVLNALVDMYAKCG------DIVKARTVFDRIGNKD---LISYNS 265 (526)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~g-------~~~~-~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~---~~~~~~ 265 (526)
.+...|++++|...+++..+.. ..+. ...+..+...+...+ .+..+...++.....+ ..++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999887641 1222 233333333333322 2445555555554332 357888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 009782 266 MLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+...|...|++++|...+++..+
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-10 Score=90.57 Aligned_cols=102 Identities=8% Similarity=-0.060 Sum_probs=81.0
Q ss_pred CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHH
Q 009782 421 GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFEL 498 (526)
Q Consensus 421 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (526)
.+.| +...+..+...+.+.|++++|+..|.+.+...|+ +..|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 4556777778888888888888888777777774 4777888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 009782 499 LIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 499 l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
++.+|.+.|++++|.+.|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-10 Score=91.18 Aligned_cols=116 Identities=8% Similarity=0.013 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 469 (526)
..+..+...|.+.|++++|.+.|+++.+. -+-+...|..+..+|.+.|++++|+..|.+.+...|+ ...+..+...+
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35667888899999999999999999864 2336888999999999999999999999888988885 58888899999
Q ss_pred HhcCChHHHHHH-HHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 470 YLHGNVCMGETA-AQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 470 ~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.+.|++++|.+. ++++++++|+++.+|.....++.+.|+
T Consensus 110 ~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999998776654 689999999999999999999888875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=94.05 Aligned_cols=124 Identities=14% Similarity=0.009 Sum_probs=105.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHG 473 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 473 (526)
|...+...|++++|.+.++.... ..| +...+..+...|.+.|++++|++.|.+.+...|+ ..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677899999999988763 344 4566778999999999999999999999999995 589999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV-ERMLVDR 522 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 522 (526)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887665 5776653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-09 Score=90.77 Aligned_cols=134 Identities=9% Similarity=0.023 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHh------------------cCChHHHHHHHHh
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV-EHYACMVNLYGR------------------AGLIDEAYSMIVE 451 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~------------------~g~~~~A~~~~~~ 451 (526)
..+..+..++.+.|++++|...|+++.+.+.-.+.. ..+..+..++.. .|++++|...|.+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 456667777788888888888888887652222221 234444444443 5788899988877
Q ss_pred hcCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChH
Q 009782 452 KMEFEASP-VVW-----------------GALLYACYLHGNVCMGETAAQKLFELEPDNE---HNFELLIKIYGNAGRLD 510 (526)
Q Consensus 452 ~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 510 (526)
.+...|+. ..+ ..+...+.+.|++++|+..++++++..|+++ .++..++.+|.+.|+++
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 88877765 222 2455678899999999999999999999976 56889999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 009782 511 DVERVERMLVDRGL 524 (526)
Q Consensus 511 ~A~~~~~~m~~~g~ 524 (526)
+|.+.++.+...+.
T Consensus 202 ~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 202 QAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999887664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-09 Score=94.95 Aligned_cols=167 Identities=12% Similarity=0.001 Sum_probs=126.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHh
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD----HLTFVSLLSACA 401 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~ 401 (526)
+...+-.+...+.+.|++++|...|+++. + ..|+ ...+..+..++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l----------------------------~--~~p~~~~~~~a~~~lg~~~~ 63 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVF----------------------------T--YGRTHEWAADAQFYLARAYY 63 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHG----------------------------G--GCSCSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHH----------------------------H--hCCCCcchHHHHHHHHHHHH
Confidence 34445556667777777777777776554 2 1222 456777888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHh--------cCChHHHHHHHHhhcCCCCCH-HHH---------
Q 009782 402 HLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGR--------AGLIDEAYSMIVEKMEFEASP-VVW--------- 462 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~-~~~--------- 462 (526)
..|++++|...|+.+.+.+.-.| ....+..+..++.. .|++++|+..|.+.+...|+. ...
T Consensus 64 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~ 143 (261)
T 3qky_A 64 QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL 143 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence 88999999999998887532222 24566777788888 889999999997777767754 333
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHccCCCCc---chHHHHHHHHHhc----------CChHHHHHHHHHHHh
Q 009782 463 --------GALLYACYLHGNVCMGETAAQKLFELEPDNE---HNFELLIKIYGNA----------GRLDDVERVERMLVD 521 (526)
Q Consensus 463 --------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~ 521 (526)
..+...|...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+
T Consensus 144 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 144 RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 4567889999999999999999999999854 4788999999977 999999999999876
Q ss_pred C
Q 009782 522 R 522 (526)
Q Consensus 522 ~ 522 (526)
.
T Consensus 224 ~ 224 (261)
T 3qky_A 224 I 224 (261)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-08 Score=88.59 Aligned_cols=162 Identities=13% Similarity=0.084 Sum_probs=95.5
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCC-----hhHHHHHHHh---cCCchHHHHHHHHHHHCCCCC-----CHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKD-----VVSWNSIIHA---HSKDHEALIYFEQMERDGVLP-----DHLT 392 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p-----~~~~ 392 (526)
+...+..+..++...|++++|++++.+....+ ...+..++.. .++.+.|.+.+++|.+ ..| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHH
Confidence 33344466677777788887777777653322 1122222222 4666666667767766 455 2455
Q ss_pred HHHHHHH--HhccC--CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCC----------CC-
Q 009782 393 FVSLLSA--CAHLG--SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEF----------EA- 457 (526)
Q Consensus 393 ~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p- 457 (526)
...|..+ ....| +..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.+...... .|
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 5555555 22233 777888888887643 344233334444777778888888877433332 24
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
++.++..++......|+ +|.++++++.+..|+++.
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 33556566665555666 677778888888887766
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-09 Score=84.13 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=90.2
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHH
Q 009782 386 VLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWG 463 (526)
Q Consensus 386 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 463 (526)
+.|+. ..+......+.+.|++++|.+.|+++.+. -+.+...|..+..+|.+.|++++|++.+.+.+...|+ ...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 36677777888888888888888888764 2346778888888888888888888888778877775 47788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.+..++...|++++|++.|+++++++|++..++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888888888888877776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=84.34 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=93.4
Q ss_pred CCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 422 ISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 422 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+.|+ ...+......|.+.|++++|++.|.+.+...|+ ...|..+..++.+.|++++|+..++++++++|++..+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5564 567788899999999999999999999988885 58899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.+|...|++++|.+.|++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-09 Score=106.91 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHH
Q 009782 371 DHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSM 448 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 448 (526)
.++|...+++..+ ..| +...+..+...+...|++++|.+.+++..+ ..| +...+..+...|...|++++|.+.
T Consensus 5 ~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 5 GPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444455544444 233 345666677777777777777777777764 233 466667777777777777777777
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHhCC
Q 009782 449 IVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA---GRLDDVERVERMLVDRG 523 (526)
Q Consensus 449 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g 523 (526)
+.+.+...|+ ...+..+...+...|++++|.+.+++++++.|++..++..++.+|... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7666666664 366677777777777777777777777777777777777777777777 77777777777766543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-09 Score=96.60 Aligned_cols=133 Identities=11% Similarity=-0.079 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhc-CChHHHHHHHHhhcCCCCC------
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRA-GLIDEAYSMIVEKMEFEAS------ 458 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~------ 458 (526)
..+|+.+..+|...|++++|...+++..+.+.-..+ ..++..+...|... |++++|+..|.+++...|+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 458889999999999999999999998764211112 45788899999996 9999999999888865542
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 459 -PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-------NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 459 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..++..+...+...|++++|+..+++++++.|.+.. .|..++.+|...|++++|...+++..+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356888999999999999999999999999887654 4788899999999999999999987653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-09 Score=97.25 Aligned_cols=232 Identities=11% Similarity=0.056 Sum_probs=137.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 009782 207 LGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK-CGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRG 285 (526)
Q Consensus 207 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 285 (526)
.|++++|.+++++..+... .. +.+ .+++++|...|.. ....|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 3556666666666554321 10 111 4666666666554 24566677777777777766
Q ss_pred HHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHH
Q 009782 286 MILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSII 365 (526)
Q Consensus 286 m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 365 (526)
..+.... .++... -...++.+..+|...|++++|...|++
T Consensus 62 al~~~~~------------~~~~~~---------------~a~~~~~lg~~~~~~g~~~~A~~~~~~------------- 101 (307)
T 2ifu_A 62 EAEAHAN------------NRSLFH---------------AAKAFEQAGMMLKDLQRMPEAVQYIEK------------- 101 (307)
T ss_dssp HHHHHHH------------TTCHHH---------------HHHHHHHHHHHHHHTTCGGGGHHHHHH-------------
T ss_pred HHHHHHH------------cCCHHH---------------HHHHHHHHHHHHHhCCCHHHHHHHHHH-------------
Confidence 5542000 000000 123455666777778888888777763
Q ss_pred HhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcC
Q 009782 366 HAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP----RVEHYACMVNLYGRAG 440 (526)
Q Consensus 366 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g 440 (526)
|++++.+ .|-.. ...++..+...|.. |++++|...+++..+.+.-.. ...++..+...|.+.|
T Consensus 102 --------Al~l~~~---~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 102 --------ASVMYVE---NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp --------HHHHHHT---TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHH---cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 2222221 11111 12466677777777 888888888888775421111 1456777888888888
Q ss_pred ChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch-----HHHHHHHHHhcCC
Q 009782 441 LIDEAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN-----FELLIKIYGNAGR 508 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~ 508 (526)
++++|++.|.+.+...|+ ...+..++..+...|++++|...+++++ +.|....+ ...++.++ ..|+
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC
Confidence 888888888666643321 1355666667777888888888888888 87764432 33455555 4667
Q ss_pred hHHHHH
Q 009782 509 LDDVER 514 (526)
Q Consensus 509 ~~~A~~ 514 (526)
.+.+.+
T Consensus 248 ~~~~~~ 253 (307)
T 2ifu_A 248 EEQLLR 253 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=89.45 Aligned_cols=159 Identities=7% Similarity=0.001 Sum_probs=122.7
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKV 408 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 408 (526)
+..+...+...|++++|...|++..+ ..| +...+..+...+...|++++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~------------------------------~~P~~~~a~~~la~~~~~~g~~~~ 58 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD------------------------------ELQSRGDVKLAKADCLLETKQFEL 58 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH------------------------------HHHTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------HCCCcHHHHHHHHHHHHHCCCHHH
Confidence 34556778888888888888887663 122 45678888888999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHYACMVNL-YGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
|...++.+.+. .|+...+..+... +...+...+|...+.+.+...|+ ...+..+...+...|++++|+..+++++
T Consensus 59 A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 59 AQELLATIPLE---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHTTCCGG---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999988754 3344333332222 22333444578888888888885 5888999999999999999999999999
Q ss_pred ccCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 487 ELEPDN--EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 487 ~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+..|+. +.++..++.+|...|+.++|...|++...
T Consensus 136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999875 55899999999999999999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-09 Score=94.11 Aligned_cols=193 Identities=12% Similarity=0.081 Sum_probs=122.6
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 009782 260 LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK 339 (526)
Q Consensus 260 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (526)
...+..+...+.+.|++++|...|+++.+.. |+.. .....+..+..+|.+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~----------------------------~~~~a~~~lg~~~~~ 64 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHE----------------------------WAADAQFYLARAYYQ 64 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCST----------------------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCc----------------------------chHHHHHHHHHHHHH
Confidence 3445555566666666666666666665542 2110 002333455666666
Q ss_pred cCChHHHHHHhccCCC--CChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc--------cCCHHH
Q 009782 340 DGKLDQACWLFDHMPQ--KDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAH--------LGSVKV 408 (526)
Q Consensus 340 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~--------~~~~~~ 408 (526)
.|++++|...|+...+ |+ .|. ...+..+..++.. .|++++
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~-----------------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQI-----------------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-----------------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCC-----------------------------CchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 7776666666654331 11 111 2234444555555 677777
Q ss_pred HHHHHHHHHHhcCCCCchhHH-----------------HHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHH
Q 009782 409 GERLFSVMVEKYGISPRVEHY-----------------ACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLY 467 (526)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~ 467 (526)
|...|+++.+.+ +.+.... ..+...|.+.|++++|+..|.+.+...|+ ...+..+..
T Consensus 116 A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 193 (261)
T 3qky_A 116 AIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR 193 (261)
T ss_dssp HHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 777777776542 1122222 56688899999999999999888877775 256777788
Q ss_pred HHHhc----------CChHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChHHHH
Q 009782 468 ACYLH----------GNVCMGETAAQKLFELEPDNEH---NFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 468 ~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 513 (526)
+|... |++++|+..++++++..|+++. +...+..++.+.|+++++.
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 194 AYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88766 8999999999999999999864 4555666776666666544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-09 Score=96.21 Aligned_cols=163 Identities=7% Similarity=-0.053 Sum_probs=129.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLG 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 404 (526)
+...+..+...+...|++++|...|++.. + ..| +...+..+...+...|
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al----------------------------~--~~P~~~~a~~~la~~~~~~g 165 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAW----------------------------Q--LSNQNGEIGLLLAETLIALN 165 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------H--HTTSCHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH----------------------------H--hCCcchhHHHHHHHHHHHCC
Confidence 34445566677777777777777666433 3 234 4567888899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYA-CMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAA 482 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 482 (526)
++++|...++.+... .|+..... .....+...++.++|.+.+.+.+...|+ ...+..+...+...|++++|+..+
T Consensus 166 ~~~~A~~~l~~~~~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 166 RSEDAEAVLXTIPLQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp CHHHHHHHHTTSCGG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHhCchh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999999988753 45544332 3333467788889999999888888885 488899999999999999999999
Q ss_pred HHHHccCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 483 QKLFELEPDN--EHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 483 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+++++.+|++ ..++..++.+|...|+.++|...+++...
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999987 88899999999999999999998887653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=87.70 Aligned_cols=102 Identities=12% Similarity=-0.016 Sum_probs=67.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+...|++++|...|+.+.+. -+.+...|..+..+|...|++++|++.|.+.+...|+ +..+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5555666666777777777777776653 2335666666667777777777777777666666663 366666666777
Q ss_pred hcCChHHHHHHHHHHHccCCCCcch
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
..|++++|+..|++++++.|+++..
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 7777777777777777776665553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.9e-08 Score=84.14 Aligned_cols=162 Identities=10% Similarity=-0.013 Sum_probs=130.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG- 404 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 404 (526)
++..+..+...|...+++++|+..|++. .+.| +...+..|...|.. +
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a----------------------------~~~g---~~~a~~~lg~~y~~-~g 64 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKA----------------------------AAQG---DGDALALLAQLKIR-NP 64 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------------------HHTT---CHHHHHHHHHHTTS-ST
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------HHcC---CHHHHHHHHHHHHc-CC
Confidence 5566677777787778877777776643 3333 45666677777777 6
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhhcCCCCC---HHHHHHHHHHHHh---
Q 009782 405 ---SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEAYSMIVEKMEFEAS---PVVWGALLYACYL--- 471 (526)
Q Consensus 405 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~--- 471 (526)
+.++|.+.|++..+. | +...+..|...|.. .+++++|++.|.+.....|. +..+..|...|..
T Consensus 65 ~~~~~~~A~~~~~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 65 QQADYPQARQLAEKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp TSCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC
Confidence 899999999999764 3 56777888888877 88999999999888888874 6888889999988
Q ss_pred -cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 009782 472 -HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA-G-----RLDDVERVERMLVDRGL 524 (526)
Q Consensus 472 -~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 524 (526)
.++.++|+..++++.+. |.++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 141 ~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999988 66677899999999864 3 89999999999888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=109.34 Aligned_cols=135 Identities=8% Similarity=-0.066 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 009782 369 SKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 447 (526)
|++++|...|++..+. .| +...|..+..++...|++++|.+.|+++.+. .+.+...+..+..+|.+.|++++ ++
T Consensus 447 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 447 GDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp TCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred CCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HH
Confidence 4445555555544442 22 2334444444444555555555555554432 11133444444444555555555 44
Q ss_pred HHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 448 MIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 448 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
.|.+++...|+. ..|..+..++.+.|++++|++.++++++++|++..++..++.+|...|+
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 444444444422 4444444445555555555555555555555544444444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-08 Score=88.27 Aligned_cols=126 Identities=10% Similarity=0.008 Sum_probs=99.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYL 471 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 471 (526)
+..+...+...|++++|...++++ +.|+...+..+...|.+.|++++|++.+.+.+...|+ ...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 445566677788888888888765 3557778888888888888888888888777776674 4777788888888
Q ss_pred cCChHHHHHHHHHHHccCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 472 HGNVCMGETAAQKLFELEPDNE----------------HNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.|++++|++.++++++..|.+. .++..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777766 778888888888888888888888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-09 Score=109.90 Aligned_cols=167 Identities=10% Similarity=-0.009 Sum_probs=120.4
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHh---cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 009782 326 DLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-DVVSWNSIIHA---HSKDHEALIYFEQMERDGVLPD-HLTFVSLLS 398 (526)
Q Consensus 326 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 398 (526)
+...+..+..+|...|++++|...|+++.+ | +...|..+-.. .|++++|...|++..+ ..|+ ...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 455666677777788888888887777664 3 33333333222 5777888888888777 4453 467889999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCC---
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGN--- 474 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~--- 474 (526)
++...|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|++.|.+++...|+. ..+..+..++...++
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------
T ss_pred HHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCC
Confidence 9999999999 9999999874 23367889999999999999999999998999999975 777778888766665
Q ss_pred --hHHHHHHHHHHHccCCCCcchHH
Q 009782 475 --VCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 475 --~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
.+...+..+.+.++.+.++....
T Consensus 587 ~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 587 VTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred CCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34444555555566666666443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=83.02 Aligned_cols=128 Identities=7% Similarity=-0.021 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYAC 469 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 469 (526)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45777888889999999999999999874 3446888899999999999999999999888887885 57888999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCCcchHHHHHHH--HHhcCChHHHHHHHHHHH
Q 009782 470 YLHGNVCMGETAAQKLFELEPDNEHNFELLIKI--YGNAGRLDDVERVERMLV 520 (526)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 520 (526)
...|++++|...++++++..|.+...+..+..+ +...|++++|.+.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999998887555554 888999999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=87.81 Aligned_cols=152 Identities=15% Similarity=0.021 Sum_probs=118.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDH-LTFVS----------------LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYA 430 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (526)
.|++++|...|++..+ ..|+. ..+.. +..++...|++++|...+++..+. -+-+...+.
T Consensus 17 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 92 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLE 92 (208)
T ss_dssp TTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 6889999999999988 45654 35666 888899999999999999999874 233688899
Q ss_pred HHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC--hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 431 CMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN--VCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
.+...|...|++++|++.|.+.+...|+ ...+..+...+...|+ .+.+...++++....|. ...+..++.++...|
T Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 93 ACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHcc
Confidence 9999999999999999999888888895 4788888888766554 44556666665543333 234667788888999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 009782 508 RLDDVERVERMLVDRGL 524 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g~ 524 (526)
++++|...|++..+...
T Consensus 172 ~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 172 RYEKARNSLQKVILRFP 188 (208)
T ss_dssp THHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999886543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=86.37 Aligned_cols=129 Identities=9% Similarity=-0.031 Sum_probs=101.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhc-------CCCCCH-H
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKM-------EFEASP-V 460 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~-~ 460 (526)
+..+...+...|++++|...++++.+...-.++ ..+++.+...|...|++++|...|.+++ +..+.. .
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 345666777888999999999999874112223 3368899999999999999999997776 222222 5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDN------EHNFELLIKIYGNAGR-LDDVERVERMLVD 521 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 521 (526)
++..+...|.+.|++++|+..+++++++.+.. ..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999998864332 5679999999999995 6999999888753
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-08 Score=88.07 Aligned_cols=177 Identities=12% Similarity=0.029 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhc
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 151 (526)
.+...+.+.... +.+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+...+.+.|++++|...+++
T Consensus 102 ~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 102 EEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444443 3356667777788889999999999999998875 56778888999999999999999999999
Q ss_pred cccCCCCcccHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-ch
Q 009782 152 MSNRTAFAFPWN-SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DG 229 (526)
Q Consensus 152 ~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~ 229 (526)
+...+|+..... .....+...++.++|+..+++..+.. +.+...+..+...+...|++++|...+..+.+..... +.
T Consensus 177 ~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 177 IPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp SCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred CchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 988777543222 22233667788888899898888753 3455677888888889999999999999888875221 25
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
..+..++..+...|+.++|...|++
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 6778888888888888888777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=9.2e-09 Score=95.62 Aligned_cols=129 Identities=10% Similarity=-0.013 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----------------VEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
...+..+...+.+.|++++|...|+++.+. .|+ ...|..+..+|.+.|++++|+..+.+.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457788888999999999999999999875 343 4789999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV-ERVERMLVD 521 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 521 (526)
...|+ ...+..+..++...|++++|+..|++++++.|++..++..++.++.+.|++++| .+.++.|.+
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88885 588999999999999999999999999999999999999999999999999999 557777653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-08 Score=76.05 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=71.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~ 172 (526)
+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+++....|. +..+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4445555666666666666666665543 334555555666666666666666666665444332 23455555566666
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666655532 223444555555555666666666665555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-08 Score=77.96 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3457778888899999999999999999875 3446788899999999999999999999888877775 578888999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLD 510 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (526)
.+...|++++|...++++++..|.+..++..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-08 Score=90.03 Aligned_cols=129 Identities=9% Similarity=-0.057 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C--chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-------H
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGIS--P--RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------P 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~ 459 (526)
.+|..+...|...|++++|...+++..+.+.-. + ...++..+...|.. |++++|++.|.+++...|. .
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 478888888999999999999999887642111 1 24677888899988 9999999999777754332 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNE------HNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6788899999999999999999999999765443 256778888889999999999999876
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-07 Score=84.45 Aligned_cols=139 Identities=8% Similarity=-0.083 Sum_probs=60.2
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009782 111 IKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA---FAFPWNSLISGYAELGEYEDAIALYFQMEE 187 (526)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 187 (526)
...++...+.+ .++...+..+..++...|++++|++++.+....++ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444443332 23333333444555555555555555555433332 123444555555555555555555555544
Q ss_pred cCCCC-----CcchHHHHHHHHh--ccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 188 EGVEP-----DQFTFPRVLKACA--GLG--LIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 188 ~~~~p-----~~~t~~~ll~~~~--~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
. .| +..+...+..++. ..| +...|..+|+++.+. .|+......++.++.+.|++++|++.++.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 23 1233333333321 112 455555555554332 22212222233345555555555555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=78.75 Aligned_cols=109 Identities=7% Similarity=-0.064 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+.+.+...|+ ...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4444555555556666666666655543 2224555555555555666666666655555555553 345555555555
Q ss_pred hcCChHHHHHHHHHHHccC------CCCcchHHHHHHH
Q 009782 471 LHGNVCMGETAAQKLFELE------PDNEHNFELLIKI 502 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 502 (526)
..|++++|...+++++++. |.+..+...+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 5666666666666665555 5554444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-08 Score=78.12 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHH
Q 009782 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALL 466 (526)
Q Consensus 388 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 466 (526)
.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+.+.+...|+ ...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34557888888899999999999999998853 2336788888999999999999999999888877775 57888888
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
..+...|++++|.+.++++++..|.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988889999999887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-08 Score=81.11 Aligned_cols=158 Identities=7% Similarity=0.009 Sum_probs=82.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHH-HHhc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISG-YAEL 172 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~-~~~~ 172 (526)
+......+.+.|++++|...++...+.. +.+...+..+..++...|++++|+..|++....+|++..+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4444555666777777777777766654 4456667777777777777777777777766555422211111111 1111
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 009782 173 GEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGF-DGFVLNALVDMYAKCGDIVKARTV 251 (526)
Q Consensus 173 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 251 (526)
+...+|+..+++..+.. +-+...+..+...+...|++++|...++.+.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 22233455555555432 1123444555555555555555555555555443211 233444455555555555555544
Q ss_pred Hh
Q 009782 252 FD 253 (526)
Q Consensus 252 ~~ 253 (526)
|+
T Consensus 167 y~ 168 (176)
T 2r5s_A 167 YR 168 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=80.17 Aligned_cols=106 Identities=9% Similarity=-0.032 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 470 (526)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|.+.+...|+. ..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5555666677778888888888877753 23356677777777778888888888887777767743 66677777777
Q ss_pred hcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 471 LHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888887777766644433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.3e-09 Score=85.88 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=86.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCCh--HHH
Q 009782 369 SKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL-YGRAGLI--DEA 445 (526)
Q Consensus 369 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~A 445 (526)
+++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+... +...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45566777777776632 224567777777788888888888888887764 23356666777777 6677777 888
Q ss_pred HHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 446 YSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 446 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
...+.+.+...|+ ...+..+...+...|++++|...++++++..|++..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888777776774 466777777788888888888888888888877655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-08 Score=75.73 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYA 468 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 468 (526)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|...+.+.+...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 457788888899999999999999999875 344677888999999999999999999977777666 45788889999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
+...|++++|...++++++..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998988888887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.8e-08 Score=77.37 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=93.6
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHH
Q 009782 386 VLPDH-LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWG 463 (526)
Q Consensus 386 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 463 (526)
+.|+. ..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|...|++++|++.|.+++...|+ +..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 44544 37778888899999999999999999974 3347889999999999999999999999999999996 48899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
.+..+|...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999854
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=78.06 Aligned_cols=96 Identities=11% Similarity=-0.064 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
.+..+...+.+.|++++|+..+.+.+...|+ ...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888899999999999888888884 578888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 009782 507 GRLDDVERVERMLVDRG 523 (526)
Q Consensus 507 g~~~~A~~~~~~m~~~g 523 (526)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999998887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-06 Score=81.94 Aligned_cols=123 Identities=8% Similarity=0.064 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCChHHHHHHHHhhcCCCCC-HHHHHHHHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR-AGLIDEAYSMIVEKMEFEAS-PVVWGALLYA 468 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 468 (526)
..|...+....+.++.+.|..+|+.+ .. . ..+...|......-.. .++.+.|..+|...+..-|+ +..+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34566666666667788888888877 32 1 1233344322222222 23578888888666654454 3445556666
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
....|+.+.|..+|+++ +.....|...+..-...|+.+.+.++++++.
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67778888888888876 2345556777766677788888887777765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-08 Score=80.68 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|.+.+...|+ ...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4557888888899999999999999999874 2337788889999999999999999999888888885 588888999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (526)
++...|++++|+..+++++++.|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-08 Score=78.04 Aligned_cols=92 Identities=8% Similarity=-0.025 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc-------hHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-------NFELLI 500 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 500 (526)
+..++..+.+.|++++|++.|.+++...|+ ...|..+..+|...|++++|++.+++++++.|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344455555555555555555555554553 244455555555555555555555555554443321 344445
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 009782 501 KIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+|...|++++|.+.|++..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=7e-08 Score=76.49 Aligned_cols=101 Identities=7% Similarity=-0.079 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 467 (526)
+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+.+.+...|+ ...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666777777777777777777777654 2334666677777777777777777777666666664 366666777
Q ss_pred HHHhcCChHHHHHHHHHHHccCCC
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
.+...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777776665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.1e-07 Score=76.79 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=87.7
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 409 (526)
+..+...+...|++++|...|++... |+...+..+...+...|++++|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------------------------------~~~~~~~~lg~~~~~~g~~~~A 56 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--------------------------------PHSRICFNIGCMYTILKNMTEA 56 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--------------------------------CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--------------------------------CChHHHHHHHHHHHHcCCHHHH
Confidence 34566777888888888888876653 3455666666677777777777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-----------------HHHHHHHHHHHHhc
Q 009782 410 ERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-----------------PVVWGALLYACYLH 472 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----------------~~~~~~l~~~~~~~ 472 (526)
...+++..+. .+.+...+..+...|...|++++|.+.|.+.+...|+ ...+..+...+...
T Consensus 57 ~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 57 EKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 7777777654 2335566667777777777777777777665554332 15666677777777
Q ss_pred CChHHHHHHHHHHHccCCCC
Q 009782 473 GNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~ 492 (526)
|++++|...+++++++.|++
T Consensus 135 g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 135 EEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHTTCCSG
T ss_pred cCHHHHHHHHHHHHHcCccc
Confidence 77777777777777777764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.7e-08 Score=82.31 Aligned_cols=133 Identities=8% Similarity=-0.001 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR--------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
..+..+...+...|++++|...|+++.+...-.|+ ...+..+..+|.+.|++++|+..+.+.+...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 35666777888999999999999999864211221 2788889999999999999999998888888
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 009782 457 AS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE-RVERMLVDRG 523 (526)
Q Consensus 457 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 523 (526)
|+ ...+..+..++...|++++|+..+++++++.|.+..++..+..++...|+.+++. ..+..|...|
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 85 5888899999999999999999999999999999999999999999999998887 5666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=80.59 Aligned_cols=131 Identities=11% Similarity=0.070 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 009782 163 NSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKC 242 (526)
Q Consensus 163 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 242 (526)
+.+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 336677777777777777777777653 2345566777777777778888887777777764 44566677777766555
Q ss_pred CC--HHHHHHHHhhcCCCCcc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHH
Q 009782 243 GD--IVKARTVFDRIGNKDLI--SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVA 297 (526)
Q Consensus 243 g~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 297 (526)
|+ .+.+...++....++.. .+.....++...|++++|...|++..+. .|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 43 45566666666665543 2333455566677888888888877664 565443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-07 Score=80.49 Aligned_cols=128 Identities=9% Similarity=-0.043 Sum_probs=97.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHHhhc---CCCCC-----HH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGI--SPR--VEHYACMVNLYGRAGLIDEAYSMIVEKM---EFEAS-----PV 460 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~ 460 (526)
+..+...+...|++++|...++++.+...- .+. ..+++.+...|...|++++|...+.+++ ...|+ ..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 334556677888999999999988753111 111 4578888999999999999999997766 22333 15
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC------CcchHHHHHHHHHhcCChHHH-HHHHHHHH
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPD------NEHNFELLIKIYGNAGRLDDV-ERVERMLV 520 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 520 (526)
++..+...|...|++++|+..+++++++.+. -..+|..++.+|.+.|++++| ...+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7888899999999999999999999875422 145688899999999999999 77677654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.4e-08 Score=73.43 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CcchHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPD--NEHNFELLIK 501 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 501 (526)
+...+..+...+...|++++|...+.+.+...|+ ...+..+...+...|++++|.+.++++++..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556667777777888888888888777766664 466777777888888888888888888888888 7888888888
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 009782 502 IYGNA-GRLDDVERVERMLVDRGL 524 (526)
Q Consensus 502 ~~~~~-g~~~~A~~~~~~m~~~g~ 524 (526)
+|.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888776543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-06 Score=75.80 Aligned_cols=124 Identities=7% Similarity=0.034 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH-H
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGS------VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE-A 445 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A 445 (526)
++++.++++.+.... |...|+.....+...+. ++++.+.++.+... .+-|...|+.+...+.+.|+..+ +
T Consensus 164 ~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHH
Confidence 445555555553222 44455555555555554 56666666666543 23355566666666656555333 2
Q ss_pred HHHHHhhcCCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCcchHHHH
Q 009782 446 YSMIVEKMEFE---A-SPVVWGALLYACYLHGNVCMGETAAQKLFE-LEPDNEHNFELL 499 (526)
Q Consensus 446 ~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l 499 (526)
.++..+..... | ++..+..+...+.+.|+.++|.++++.+.+ .+|.....|...
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 33332223222 2 335555555566666666666666666654 566555544433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=74.42 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=91.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.+...+..+...+.+.|++++|.+.+.+.+...| +...+..+...+...|++++|+..++++++..|.+..++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3577888899999999999999999988888888 458889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 009782 503 YGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~~ 522 (526)
|.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=94.78 Aligned_cols=142 Identities=9% Similarity=-0.057 Sum_probs=114.6
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC
Q 009782 327 LCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGS 405 (526)
Q Consensus 327 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~ 405 (526)
...+..+...|...|++++|.+.|++.. + ..| +...+..+..++...|+
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al----------------------------~--~~p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGL----------------------------A--LHPGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------------T--TSTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------H--hCCCCHHHHHHHHHHHHHCCC
Confidence 4455666667777777777766665433 3 233 45688889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhc---CChHHHHHH
Q 009782 406 VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLH---GNVCMGETA 481 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~a~~~ 481 (526)
+++|.+.+++..+. .+.+...+..+...|.+.|++++|.+.+.+.+...|+ ...+..+...+... |+.++|.+.
T Consensus 73 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 73 HAEAAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999875 2346788899999999999999999999888888885 47888899999999 999999999
Q ss_pred HHHHHccCCCCcchHHHHH
Q 009782 482 AQKLFELEPDNEHNFELLI 500 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~ 500 (526)
++++++.+|.+...+..+.
T Consensus 151 ~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 151 VRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhcCCcccChHHHhC
Confidence 9999999999887776655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.8e-08 Score=77.09 Aligned_cols=108 Identities=9% Similarity=-0.015 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 412 LFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 412 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
.++.+. .+.| +...+..+...+.+.|++++|+..|.+.+...| +...|..+..++...|++++|+..+++++++.
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445554 4455 566778889999999999999999988888888 45888899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
|+++.++..++.+|...|++++|.+.|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.2e-07 Score=79.87 Aligned_cols=134 Identities=10% Similarity=0.010 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH----HHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV----VWG 463 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~ 463 (526)
+...+..+...+...|++++|...|+.+.+.+...|. ...+..+..+|.+.|++++|++.|.+.+...|+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677788999999999999999976322222 35778889999999999999999988887777542 444
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHccCCCCcchH-----------------HHHHHHHHhcCC
Q 009782 464 ALLYACYL------------------HGNVCMGETAAQKLFELEPDNEHNF-----------------ELLIKIYGNAGR 508 (526)
Q Consensus 464 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~ 508 (526)
.+..++.. .|+.++|+..++++++..|+++.++ ..++..|.+.|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45555543 5789999999999999999988765 356788999999
Q ss_pred hHHHHHHHHHHHhC
Q 009782 509 LDDVERVERMLVDR 522 (526)
Q Consensus 509 ~~~A~~~~~~m~~~ 522 (526)
+++|...++++.+.
T Consensus 163 ~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 163 WVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=8.7e-08 Score=76.25 Aligned_cols=91 Identities=16% Similarity=0.012 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHcc-------C
Q 009782 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------------PVVWGALLYACYLHGNVCMGETAAQKLFEL-------E 489 (526)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 489 (526)
......+.+.|++++|++.|.+++...|+ ...|..+..++.+.|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444455555555555555555544444 125666666666666666666666666666 6
Q ss_pred CCCcchH----HHHHHHHHhcCChHHHHHHHHHHH
Q 009782 490 PDNEHNF----ELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 490 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
|++..+| ...+.+|...|++++|++.|++..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666 666777777777777766666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=70.55 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYA 468 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 468 (526)
...+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+.+.+...|+ ...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445667777788888999999988888764 2336777888888888889999998888777777774 5777888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...|++++|...++++++..|+++..+..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888999999999988888888877776666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=74.15 Aligned_cols=113 Identities=13% Similarity=-0.027 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWG 463 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 463 (526)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+.+.+...|+ ...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456777788888888888888888888874 4555 677777888888888888888888777777774 46777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
.+...+...|++++|...+++++++.|++..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 78888888888888888888888888888776666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=71.80 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+...|++++|...+.+.+...| +...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456677888999999999999999988887777 5588888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 009782 504 GNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~g~ 524 (526)
...|++++|.+.+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=73.31 Aligned_cols=98 Identities=8% Similarity=-0.097 Sum_probs=89.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+.+.|++++|++.|.+.+...|+ ...|..+..++...|++++|+..++++++++|+++.+|..++.+|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456778889999999999999999889988885 588999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009782 504 GNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (526)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=75.61 Aligned_cols=101 Identities=12% Similarity=-0.102 Sum_probs=90.3
Q ss_pred CCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 422 ISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 422 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
+.| +...+..+...+.+.|++++|...|.+.+...|+ ...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 444 4566677888899999999999999888888884 58888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999987653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-06 Score=77.94 Aligned_cols=201 Identities=7% Similarity=-0.057 Sum_probs=133.9
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhH---HHHHHHHHHhcCChhHHHHHHhccccC
Q 009782 79 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGI---SSKLLRLYATFGLIDEAHQVFDQMSNR 155 (526)
Q Consensus 79 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 155 (526)
+..+......|+..+...+...+.-. ++ .++ ......+... +...+..+...|++++|.+++++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~~---~~~----~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--II---HFY----EVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--TH---HHH----HTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--HH---HHh----CCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 33443333566777776666665432 11 111 1111222222 233466778899999999999987665
Q ss_pred CCCc-------ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCc----chHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 156 TAFA-------FPWNSLISGYAELGEYEDAIALYFQMEEEGVE-PDQ----FTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 156 ~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
.+.. ..+..+...+...+++++|+..|++..+.... ++. .+|+.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3321 12334666667778999999999998874322 221 25888888999999999999999988742
Q ss_pred -----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCC-hHHHHHHHHHHH
Q 009782 224 -----GFGF-DGFVLNALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGL-LVEAFDIFRGMI 287 (526)
Q Consensus 224 -----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 287 (526)
+..+ ...++..+...|.+.|++++|...+++..+ .+ ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1112 234778889999999999999999877653 11 3577888889999994 699999888765
Q ss_pred H
Q 009782 288 L 288 (526)
Q Consensus 288 ~ 288 (526)
.
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=72.33 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
...+..+...+...|++++|.+.+.+.+...|+ ...+..+...+...|++++|...++++.+..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999888877774 5788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 009782 505 NAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 505 ~~g~~~~A~~~~~~m~~~g 523 (526)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.6e-07 Score=76.96 Aligned_cols=173 Identities=13% Similarity=-0.046 Sum_probs=89.6
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcC----ChHHHHHHHHHH
Q 009782 110 GIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELG----EYEDAIALYFQM 185 (526)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m 185 (526)
|.+.|+...+.| ++..+..+...|...+++++|.+.|++..+.+ ++.++..|...|.. + ++++|++.|++.
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 334444444432 44444555555555555555555555544432 12344444444444 3 555666666555
Q ss_pred HHcCCCCCcchHHHHHHHHhc----cCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHh----cCCHHHHHHHHhhcC
Q 009782 186 EEEGVEPDQFTFPRVLKACAG----LGLIRVGEKVHLDAVRFGFG-FDGFVLNALVDMYAK----CGDIVKARTVFDRIG 256 (526)
Q Consensus 186 ~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 256 (526)
.+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|...|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 5433 33444555555544 55666666666665554421 114455555555555 556666666665553
Q ss_pred C--CCcccHHHHHHHHHhC-C-----ChHHHHHHHHHHHHcC
Q 009782 257 N--KDLISYNSMLTGYIHH-G-----LLVEAFDIFRGMILNG 290 (526)
Q Consensus 257 ~--~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 290 (526)
+ .+...+..|...|... | ++++|...|++..+.|
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2 3444555555555543 2 6677777776666655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-07 Score=75.63 Aligned_cols=98 Identities=8% Similarity=0.018 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+.+.|++++|++.|.+.+...| +...|..+..++...|++++|+..+++++++.|++..+|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566778888889999999999999988888888 4578888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009782 504 GNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~ 522 (526)
...|++++|.+.|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999998887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-05 Score=77.00 Aligned_cols=335 Identities=11% Similarity=-0.021 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCC-hhHHHHHHhccccC---CC-CcccHHHHHHHHH----hcCCh
Q 009782 105 KAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGL-IDEAHQVFDQMSNR---TA-FAFPWNSLISGYA----ELGEY 175 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~---~~-~~~~~~~li~~~~----~~~~~ 175 (526)
++++.+.++|+..... .|+...|...+....+.+. .+....+|+..... ++ +...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888888774 4688888888877776653 34455666654332 22 2255666665543 23567
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHhc---cC--------------ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 176 EDAIALYFQMEEEGVEPDQFTFPRVLKACAG---LG--------------LIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 176 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---~g--------------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
+.+.++|++.... ++.. +..+-..|.. .. .+..|..+++.+...--..+...|...+..
T Consensus 106 ~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 7788888888762 2211 1222222211 11 122223333332221000122233333332
Q ss_pred HHhc--CC-----HHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhh
Q 009782 239 YAKC--GD-----IVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLL 308 (526)
Q Consensus 239 ~~~~--g~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 308 (526)
-... |- .+.+..+|+++.. .+...|...+..+.+.|+.++|..++++.... |....+......+...
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~ 258 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDE 258 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTC
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcch
Confidence 1111 00 2234445554432 23345555566666666666666666666665 3322211111111000
Q ss_pred HHHHHHHHHHHHhCC------------CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHH
Q 009782 309 RIGAQVHGWVLRRGV------------EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALI 376 (526)
Q Consensus 309 ~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~ 376 (526)
+ ++++.+.+.-. .....+|...+..+.+.+ ..+.|..
T Consensus 259 ~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~----------------------------~~~~AR~ 307 (493)
T 2uy1_A 259 E---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR----------------------------GLELFRK 307 (493)
T ss_dssp T---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH----------------------------CHHHHHH
T ss_pred h---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC----------------------------CHHHHHH
Confidence 0 01111111100 000112222233333333 3455556
Q ss_pred HHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 009782 377 YFEQMERDGVLPDHLTFV--SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKME 454 (526)
Q Consensus 377 ~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (526)
+|+.. .. ...+...|. +.+.... .++.+.|..+|+...+.++ -+...+...++...+.|+.+.|..+|.+..
T Consensus 308 i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~- 381 (493)
T 2uy1_A 308 LFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE- 381 (493)
T ss_dssp HHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-
T ss_pred HHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 66555 21 112333443 2233222 3469999999999988632 234456667787788999999999994442
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 455 FEASPVVWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 455 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
.....|...+..-...|+.+.+..++++..+
T Consensus 382 --k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 --KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp --CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2467788888877888999999998888875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-07 Score=72.13 Aligned_cols=100 Identities=17% Similarity=0.073 Sum_probs=90.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELL 499 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (526)
.+...+..+...+...|++++|.+.|.+.+...|+ ...+..+...+...|++++|+..++++++..|++...+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 36778888999999999999999999889998997 57788888999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 009782 500 IKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.4e-07 Score=80.72 Aligned_cols=175 Identities=9% Similarity=-0.038 Sum_probs=117.9
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 009782 262 SYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG 341 (526)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (526)
.+...+..+...|++++|.+.+.+..+.......... ....+..+...+...|
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 129 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ---------------------------FLQWQYYVAAYVLKKV 129 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH---------------------------HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH---------------------------HHHHHHHHHHHHhcCC
Confidence 3445567788888999998888877765322111100 0111233556677778
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009782 342 KLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD--HLTFVSLLSACAHLGSVKVGERLFSVMVEK 419 (526)
Q Consensus 342 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 419 (526)
++++|...+++..+.. .....+. ..+++.+...|...|++++|..+++++.+.
T Consensus 130 ~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~ 184 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQ-------------------------LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CHHHHHHHHHHHHTTC-------------------------CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-------------------------hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888887776433100 0001111 347888888999999999999999998732
Q ss_pred cCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 009782 420 YGISPR-----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-------PVVWGALLYACYLHGNVCMG-ETAAQKLF 486 (526)
Q Consensus 420 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 486 (526)
....|+ ..++..+...|.+.|++++|.+.+.+++...++ ..+|..+...|...|++++| ...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111222 257888999999999999999999776643332 47788889999999999999 77788877
Q ss_pred cc
Q 009782 487 EL 488 (526)
Q Consensus 487 ~~ 488 (526)
.+
T Consensus 265 ~~ 266 (293)
T 2qfc_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.8e-07 Score=88.55 Aligned_cols=132 Identities=9% Similarity=0.006 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
...+..+...+.+.|++++|...|+++.+...-.++ ...|..+..+|.+.|++++|+..+.+++...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 346777888899999999999999999874222111 5788899999999999999999998999888
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHH-HHHHHHh
Q 009782 457 AS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVER-VERMLVD 521 (526)
Q Consensus 457 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 521 (526)
|+ ...|..+..+|...|++++|+..|++++++.|++..++..+..++.+.|++++|.+ .++.|..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 85 58899999999999999999999999999999999999999999999999998864 5665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=71.60 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+...|++++|.+.+.+.+...| +...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 466778889999999999999999988887777 4588888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 009782 504 GNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~g 523 (526)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.1e-07 Score=75.33 Aligned_cols=133 Identities=13% Similarity=0.032 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCC---CC-C--
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKY---GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF---EA-S-- 458 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~-- 458 (526)
....+..+...+...|++++|...+++..+.. +..| ....+..+...|...|++++|.+.+.+.+.. .+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 45578888888889999999999998887631 1222 3566788888999999999999998666643 22 2
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC--CCc----chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 459 --PVVWGALLYACYLHGNVCMGETAAQKLFELEP--DNE----HNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 459 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
...+..+...+...|++++|...+++++++.+ .++ .++..++.+|...|++++|.+.+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 25677888889999999999999999886432 222 2357889999999999999998887753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=72.18 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=79.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----HHHHHHHH
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRV---EHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----PVVWGALL 466 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 466 (526)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|.+.+...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566778888888888888887641 2223 46777888888888888888888777766665 45677777
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.++...|++++|...++++++..|+++.+.......
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 888888888888888888888888876655444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=75.59 Aligned_cols=120 Identities=12% Similarity=-0.034 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------------CCCchhHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYG----------------ISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
...+......+.+.|++++|...|....+... -+.+...|..+..+|.+.|++++|+..+.+.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44677778888889999999999988876300 11134677788888888999999998888888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-chHHHHHHHHHhcCCh
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE-HNFELLIKIYGNAGRL 509 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~ 509 (526)
...|+ ...|..+..++...|++++|...+++++++.|+++ .....+..+..+.++.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 87885 47888888888899999999999999999988887 4455555555444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.7e-07 Score=72.21 Aligned_cols=98 Identities=9% Similarity=-0.053 Sum_probs=90.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
.+...+..+...+...|++++|...|.+.+...|+ ...+..+...+...|++++|+..+++++++.|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 46788899999999999999999999888888885 58889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 009782 503 YGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~ 521 (526)
|...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998865
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-05 Score=71.91 Aligned_cols=212 Identities=7% Similarity=-0.021 Sum_probs=148.1
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC--ChHHHHHHHHHHhhhccCCChhHHHHHHHHH----Hhc---CChh
Q 009782 73 DSIIQDLESSVQNGITVQTETFASLLETCYQLK--AVEHGIKLHRLIPTNLLRKNKGISSKLLRLY----ATF---GLID 143 (526)
Q Consensus 73 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~~~ 143 (526)
++|+.+.+.+....+. +...++.--..+...+ +++++++.++.++... +-+..+|+..-..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 5677777777665443 4555666666666677 8888888888888765 55566777666555 445 6788
Q ss_pred HHHHHHhccccCCCCc-ccHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC------hHHHH
Q 009782 144 EAHQVFDQMSNRTAFA-FPWNSLISGYAELGEYE--DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL------IRVGE 214 (526)
Q Consensus 144 ~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~------~~~a~ 214 (526)
+++.+++.+...+|.. .+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...|. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 8888888887776643 56776667777777777 88888888887642 355566665555666665 77788
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhhcCC------CCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 215 KVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVK-ARTVFDRIGN------KDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
+.++.++... +-|...|+-+-..+.+.|+... +..+..++.. .+...+..++..|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888877765 5577777777777777777433 4445555432 245667778888888888888888888876
Q ss_pred H
Q 009782 288 L 288 (526)
Q Consensus 288 ~ 288 (526)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-07 Score=75.07 Aligned_cols=123 Identities=10% Similarity=0.066 Sum_probs=104.3
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHH-HHhcCCh--
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYA-CYLHGNV-- 475 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~-- 475 (526)
+...|++++|...++...+. .+.+...+..+...|...|++++|...|.+.+...|+ ...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678899999999998875 3447788999999999999999999999888887774 4777888888 7789998
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
++|+..++++++..|.+..++..++.+|...|++++|.+.++++.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999887543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.4e-08 Score=73.45 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGI-SP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 479 (526)
.|++++|...|+++.+. +. .| +...+..+..+|...|++++|++.|.+.+...|+ ...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776642 10 12 4556666777777777777777777666666664 366666667777777777777
Q ss_pred HHHHHHHccCCCCcch
Q 009782 480 TAAQKLFELEPDNEHN 495 (526)
Q Consensus 480 ~~~~~~~~~~p~~~~~ 495 (526)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777766553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=90.98 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=103.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN 474 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 474 (526)
+...+.+.|++++|.+.++++.+. .+.+...|..+..+|.+.|++++|++.+.+++...|+ ...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344567889999999999999875 3336889999999999999999999999999988885 4888999999999999
Q ss_pred hHHHHHHHHHHHccCCCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 009782 475 VCMGETAAQKLFELEPDNEHNFELLIKI--YGNAGRLDDVERVER 517 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 517 (526)
+++|++.+++++++.|++..++..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 889999999999887
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-07 Score=80.57 Aligned_cols=113 Identities=9% Similarity=-0.062 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 389 DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
+...+..+...+...|++++|...++++.+. .+.+...|..+..+|.+.|++++|.+.+.+.+...|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567778888888999999999999998864 23367888888999999999999999998888888854 78888888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
++...|++++|+..+++++++.|++...+...+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 999999999999999999998887654444333333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=8e-07 Score=72.86 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
...+..+...+...|++++|...|.+.+...|+ ...+..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888999999999999999888887774 5888899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 009782 505 NAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 505 ~~g~~~~A~~~~~~m~~~g 523 (526)
..|++++|.+.++++.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HhccHHHHHHHHHHHHHhC
Confidence 9999999999999987653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.4e-07 Score=69.94 Aligned_cols=113 Identities=6% Similarity=-0.045 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC--------HHHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS--------PVVW 462 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~ 462 (526)
..+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+.+.+...|+ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777788888899999999999999875 3446778888899999999999999999777755442 5678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA 506 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (526)
..+...+...|++++|.+.++++++..| ++.....+..++...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8888889999999999999999999888 466666666655443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-07 Score=70.70 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------cchHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDN-------EHNFE 497 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 497 (526)
...+..+...+...|++++|...+.+.+...| +...+..+...+...|++++|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677888999999999999999988887777 45788889999999999999999999999988766 77899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 498 LLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.++.+|...|++++|.+.++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999987643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-07 Score=83.02 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc-------------CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKY-------------GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFE 456 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (526)
..+..+...+.+.|++++|.+.|+++.+.. ...| +...|..+..+|.+.|++++|++.+.+++...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677778889999999999999887610 0223 46788899999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 009782 457 AS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 457 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
|+ ...+..+..+|...|++++|+..+++++++.|++..++..+..++...++++++.+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 488899999999999999999999999999999999999999999999999988653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.2e-07 Score=69.20 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=83.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACY 470 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 470 (526)
.+..+...+.+.|++++|...++.+.+. -+.+...|..+..++...|++++|+..|.+.+...|+ ...+..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455667788999999999999999874 3347888999999999999999999999999999995 488889999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCc
Q 009782 471 LHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
..|++++|+..++++++..|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=68.58 Aligned_cols=99 Identities=9% Similarity=0.023 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--------HHH
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--------VVW 462 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~ 462 (526)
..+..+...+.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|++++|++.+.+.+...|+. .+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46777888999999999999999999874 23368889999999999999999999998888665532 467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..+...+...|++++|++.|+++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 78888999999999999999999998876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.1e-07 Score=72.32 Aligned_cols=131 Identities=12% Similarity=-0.002 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC---C----H
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR----VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA---S----P 459 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~ 459 (526)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+.+.+...+ + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888889999999999999988764211112 24778889999999999999999966663221 1 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPD------NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778888999999999999999999875321 245688899999999999999999998764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=65.89 Aligned_cols=102 Identities=12% Similarity=-0.025 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC---HHHHHHHH
Q 009782 390 HLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS---PVVWGALL 466 (526)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~ 466 (526)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+.+.+...|+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 346777888899999999999999999875 3446788889999999999999999999888888887 58888899
Q ss_pred HHHHhc-CChHHHHHHHHHHHccCCCCc
Q 009782 467 YACYLH-GNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 467 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 493 (526)
..+... |++++|.+.++++++..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999 999999999999999998764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-07 Score=85.06 Aligned_cols=129 Identities=9% Similarity=-0.082 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch------------------hHHHHHHHHHHhcCChHHHHHHHHhhc
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV------------------EHYACMVNLYGRAGLIDEAYSMIVEKM 453 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (526)
.+..+...+.+.|++++|...|+++.+. .|+. ..|..+..+|.+.|++++|+..+.+.+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666667777777777777776643 3432 278889999999999999999998888
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH-hcCChHHHHHHHHHHHhCC
Q 009782 454 EFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG-NAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 454 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~g 523 (526)
...|+ ...|..+..+|...|++++|+..|++++++.|++..++..+..+.. ..+..+++.+.|++|....
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88885 5888999999999999999999999999999999998888888844 5667788888888886543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-06 Score=65.93 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---cchHHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGNVCMGETAAQKLFELEPDN---EHNFELLIK 501 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 501 (526)
+..+...+...|++++|.+.|.+.+...|+. ..+..+...+...|++++|...++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3456677888999999999997777766754 377778888999999999999999999999988 677889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 009782 502 IYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 502 ~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+|...|++++|.+.++++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999887643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=8.5e-07 Score=82.31 Aligned_cols=117 Identities=9% Similarity=-0.003 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----------------HHHHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----------------VVWGALL 466 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~l~ 466 (526)
+++++|...++...+. .| +...+..+...|.+.|++++|+..|.+++...|+. ..|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4445555555444332 23 46778889999999999999999998888888864 7899999
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.++.+.|++++|+..+++++++.|++..+|..++.+|...|++++|.+.|+++.+..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999987643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-07 Score=73.27 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCC------------------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEF------------------EASP-VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
.+......+.+.|++++|+..|.+.+.. .|.. ..|..+..++.+.|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3455677788889999998888777765 3322 67788888888899999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 489 EPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9998888999999999999999999888887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-06 Score=72.34 Aligned_cols=121 Identities=12% Similarity=-0.003 Sum_probs=93.6
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-----------------HHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-----------------VVWG 463 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------------~~~~ 463 (526)
...|+++.+.+.|+...+. .......+..+...+.+.|++++|++.|.+.+...|+. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3445555555555433221 11135567788889999999999999998888766532 6788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 464 ALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 464 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+..++...|++++|+..+++++++.|++..++..++.+|...|++++|.+.+++..+..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 888999999999999999999999999999999999999999999999999999987543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.5e-06 Score=80.22 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=101.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcC--CCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc--------CCCCCH-HHH
Q 009782 398 SACAHLGSVKVGERLFSVMVEKYG--ISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM--------EFEASP-VVW 462 (526)
Q Consensus 398 ~~~~~~~~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~~ 462 (526)
..+..+|++++|+.++++..+... +.| ...+++.|..+|...|++++|..++.+.+ ...|+. .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345678999999999988876422 222 35678999999999999999999986655 335555 789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 463 GALLYACYLHGNVCMGETAAQKLFE-----LEPDNEHN---FELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 463 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.|...|...|++++|+.+++++++ +.|+++.+ ...+..++...|++++|..++.+++++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 46776654 567888999999999999999999764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.37 E-value=8e-07 Score=70.70 Aligned_cols=108 Identities=12% Similarity=-0.000 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCC--
Q 009782 391 LTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEF-- 455 (526)
Q Consensus 391 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 455 (526)
..+......+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+.+++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34566667788899999999999999864 333 238899999999999999999999888887
Q ss_pred -----CCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHH
Q 009782 456 -----EASP-VVW----GALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIK 501 (526)
Q Consensus 456 -----~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (526)
.|+. ..| .....++...|++++|+..|++++++.|.+...+..+-.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9976 788 899999999999999999999999999998775554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-07 Score=71.14 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=63.6
Q ss_pred hcCChHHHHHHHHhhcCC---CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHH
Q 009782 438 RAGLIDEAYSMIVEKMEF---EASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~---~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
..|++++|+..|.+.+.. .|+. ..+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357778888888777776 3543 677778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhC
Q 009782 514 RVERMLVDR 522 (526)
Q Consensus 514 ~~~~~m~~~ 522 (526)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888776643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=73.87 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-----CCc----ccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 232 LNALVDMYAKCGDIVKARTVFDRIGN-----KDL----ISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+..+...+...|++++|...+++... .+. .++..+...+...|++++|.+.+++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444445555555555544443321 111 2234555566666666666666655543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-07 Score=71.19 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------cchHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN------EHNFE 497 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (526)
+...+..+...+.+.|++++|++.|.+.+...|+ ...+..+..++...|++++|+..+++++++.|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567778888888999999999999888877774 5778888888999999999999999999999988 67788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 009782 498 LLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~ 518 (526)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888777655443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.4e-06 Score=72.67 Aligned_cols=124 Identities=9% Similarity=-0.105 Sum_probs=71.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHH
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACY 470 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~ 470 (526)
.+...+...|++++|.+.|+.+.. ..|+......+...+.+.+++++|+..|.+... .|++ ..+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHHHHH
Confidence 344555666667777666666543 234322444555566666777777776633332 2222 34555666666
Q ss_pred hcCChHHHHHHHHHHHccC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 471 LHGNVCMGETAAQKLFELE--PD-NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
..|++++|+..|+++.... |. ...+....+.++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6777777777777665432 33 3335566666666777777777776666543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6e-06 Score=72.87 Aligned_cols=186 Identities=10% Similarity=-0.058 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHH-------HHHHHccCChHHHHHHHHHHhh------------hcc----C--
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASL-------LETCYQLKAVEHGIKLHRLIPT------------NLL----R-- 123 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~------------~~~----~-- 123 (526)
.+++..|.+.|....+..+. ....|..+ ...+.+.++..++...+..-.+ .|. .
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 36677888888888877544 55556555 3333333333443333333322 110 0
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--cchHHH
Q 009782 124 --KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD--QFTFPR 199 (526)
Q Consensus 124 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ 199 (526)
........+...+...|++++|.++|+.+...+|.......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 002234456667777888888888888887776643355555567778888888888887554321 110 224556
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 200 VLKACAGLGLIRVGEKVHLDAVRFGFGFD--GFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 200 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66677777777777777777663322132 2234444555555666666666555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=76.86 Aligned_cols=145 Identities=8% Similarity=-0.029 Sum_probs=104.0
Q ss_pred cCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEA 445 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 445 (526)
.|++++|...|++..+. .| +...|..+..++.+.|++++|...++++.+ +.| +...+..+..+|...|++++|
T Consensus 17 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp TTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 68899999999999884 45 567888899999999999999999999875 344 678888999999999999999
Q ss_pred HHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 446 YSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 446 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
...|.+.+...|+. ..+...+....+ ...+...........|.+......+...+ .|++++|.+.+++..+.
T Consensus 92 ~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 92 IANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEG 164 (281)
T ss_dssp HHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTT
T ss_pred HHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 99998888766643 222222222222 12222223333345677777666665544 68999998888765543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-05 Score=70.65 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=116.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCcHHHH-H---HHHHHhh-hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHH
Q 009782 271 IHHGLLVEAFDIFRGMILNGFDPDPVAI-S---SILANAS-LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 345 (526)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~---~ll~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (526)
...+..++|++++++++.. .|+..|. + .++...+ .++++..+++.++.... -+..+|+.-..++.+.
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l----- 136 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRI----- 136 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHH-----
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHh-----
Confidence 3344556788888887775 3443332 1 1222223 24445555554444332 2333444433333333
Q ss_pred HHHHhccCCCCChhHHHHHHHhcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHH
Q 009782 346 ACWLFDHMPQKDVVSWNSIIHAHS-KDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVK--------VGERLFSVM 416 (526)
Q Consensus 346 A~~~~~~~~~~~~~~~~~li~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~ 416 (526)
.+ +.++++++++.+.+... -|...|+.-...+.+.|..+ ++.+.++++
T Consensus 137 ----------------------~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 137 ----------------------SPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp ----------------------CCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ----------------------cCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 13 34455555555544211 13334444333333333333 677777777
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCC-------hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCh-------------
Q 009782 417 VEKYGISPRVEHYACMVNLYGRAGL-------IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNV------------- 475 (526)
Q Consensus 417 ~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~------------- 475 (526)
.+. -+-|...|+.....+.+.++ ++++++.+.+++...|+. ..|+.+-..+.+.|+.
T Consensus 194 I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 194 LRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 664 23366666666666666665 567777777777777743 6666666556555543
Q ss_pred -------HHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 476 -------CMGETAAQKLFELE------PDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 476 -------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
.........+.... +.++.++..|+.+|...|+.++|.++++.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 45677888999999999999999999998863
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=65.08 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 408 VGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
.+.+.++++.+. .+.+...+..+...|...|++++|+..|.+.+...|+ ...|..+...+...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355566666542 2235666677777777777777777777666666664 3666667777777777777777777777
Q ss_pred ccCCC--CcchHHHHHHHHHh
Q 009782 487 ELEPD--NEHNFELLIKIYGN 505 (526)
Q Consensus 487 ~~~p~--~~~~~~~l~~~~~~ 505 (526)
++.|. +......+...+.+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHH
Confidence 76653 23333444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00024 Score=64.88 Aligned_cols=214 Identities=8% Similarity=-0.006 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhc-C-ChhHHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATF-G-LIDEAHQV 148 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~ 148 (526)
.++|+++++.+....+. +..+++.--..+...+ +++++++.++.++... +-+..+|+.....+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 35677777777766544 5556666666666667 5899999999998765 66778888888887776 7 88999999
Q ss_pred HhccccCCCCc-ccHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-------hHH
Q 009782 149 FDQMSNRTAFA-FPWNSLISGYAELGEYE--------DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL-------IRV 212 (526)
Q Consensus 149 ~~~~~~~~~~~-~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-------~~~ 212 (526)
++.+...+|.- .+|+.-...+.+.+.++ ++++.++++.+.. +-|...|+.....+...+. +++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 99998887743 56666555555555555 8999999988864 3366677777777777765 678
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH--------------------HHHHHHHhhcCC---------CCcccH
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDI--------------------VKARTVFDRIGN---------KDLISY 263 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~---------~~~~~~ 263 (526)
+.+.++++.... +-|...|+-+-..+.+.|.. ....+...++.. ++....
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 888888887765 55777777766666666543 334444444432 234566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 264 NSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
..++..|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 77888899999999999999987653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4.4e-06 Score=60.32 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+...+..+...+...|++++|...+.+.+...|+ ...+..+...+...|++++|...+++++++.|.++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567778888899999999999999888877774 477888889999999999999999999999999999999999888
Q ss_pred HhcC
Q 009782 504 GNAG 507 (526)
Q Consensus 504 ~~~g 507 (526)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=8.3e-07 Score=70.42 Aligned_cols=87 Identities=9% Similarity=-0.004 Sum_probs=71.3
Q ss_pred HhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 437 GRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN----------VCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
.+.+.+++|.+.+.+.+...|+ ...|..+..++...++ +++|+..|+++++++|++..+|..++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456677788888777777774 4777777777777665 4699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhCC
Q 009782 506 AG-----------RLDDVERVERMLVDRG 523 (526)
Q Consensus 506 ~g-----------~~~~A~~~~~~m~~~g 523 (526)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999987654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=9.6e-05 Score=67.16 Aligned_cols=217 Identities=9% Similarity=0.026 Sum_probs=106.3
Q ss_pred HhCCChH-HHHHHHHHHHHcCCCCcHHHHH----HHHHHhhh----------hHHHHHHHHHHHHhCCCCchhHHhHHHH
Q 009782 271 IHHGLLV-EAFDIFRGMILNGFDPDPVAIS----SILANASL----------LRIGAQVHGWVLRRGVEWDLCIANSLIV 335 (526)
Q Consensus 271 ~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 335 (526)
.+.|.++ +|+..++.+... .|+..|.- .++...+. ++.+..+++.+..... -+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4455554 788888888875 45554421 12222222 3445555555554432 24445544444
Q ss_pred HHHhcCC--hHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHH
Q 009782 336 VYSKDGK--LDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGS-VKVGERL 412 (526)
Q Consensus 336 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~ 412 (526)
++.+.|+ ++++ +.+++.+.+... -|...|+.-...+...|. ++++.+.
T Consensus 117 lL~~l~~~~~~~E----------------------------L~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 117 LLSRLPEPNWARE----------------------------LELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHCSSCCHHHH----------------------------HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhccCcccHHHH----------------------------HHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4444442 4444 444444444221 133444444444444444 3555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhc--------------CChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhc-----
Q 009782 413 FSVMVEKYGISPRVEHYACMVNLYGRA--------------GLIDEAYSMIVEKMEFEASP-VVWGALLYACYLH----- 472 (526)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~----- 472 (526)
++.+.+. .+-|...|+.....+.+. +.++++++.+.+++...|+. ..|+-+-..+.+.
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 5555543 122444444444443333 33556666665666556633 4444443333333
Q ss_pred ------CChHHHHHHHHHHHccCCCCcchHHHHHHHH---HhcCChHHHHHHHHHHHh
Q 009782 473 ------GNVCMGETAAQKLFELEPDNEHNFELLIKIY---GNAGRLDDVERVERMLVD 521 (526)
Q Consensus 473 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 521 (526)
+.++++++.++++++++|++..++..++... ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 2356666666666666666644433333221 134556666666666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4.6e-06 Score=80.91 Aligned_cols=117 Identities=8% Similarity=-0.014 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----------------HHHHHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----------------PVVWGALL 466 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~l~ 466 (526)
+++++|...|+...+. .| ....+..+...|.+.|++++|+..|.+++...|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444455444433321 12 4567788899999999999999999888877665 37888999
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+|.+.|++++|+..++++++++|++..+|..++.+|...|++++|...|+++.+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999987654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6e-06 Score=77.49 Aligned_cols=97 Identities=7% Similarity=-0.025 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcC----------------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKME----------------FEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
..+..+...+.+.|++++|++.|.+++. ..|. ...|..+..+|.+.|++++|+..+++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3466778889999999999999987776 4553 3788899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 490 PDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
|++..++..++.+|...|++++|.+.+++..+..
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-06 Score=78.44 Aligned_cols=97 Identities=9% Similarity=-0.051 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPV------------------VWGALLYACYLHGNVCMGETAAQKLFE 487 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 487 (526)
...+..+...+.+.|++++|...|.+++...|+.. .|..+..++.+.|++++|+..++++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566788889999999999999988888888754 788899999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 488 LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 488 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+.|++..+|..++.+|...|++++|.+.|++..+.
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.2e-05 Score=68.42 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=134.7
Q ss_pred HhcCChH-HHHHHhccCCCCChh---HHHH---HHHhcCC----------chHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009782 338 SKDGKLD-QACWLFDHMPQKDVV---SWNS---IIHAHSK----------DHEALIYFEQMERDGVLPDHLTFVSLLSAC 400 (526)
Q Consensus 338 ~~~g~~~-~A~~~~~~~~~~~~~---~~~~---li~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 400 (526)
.+.|.++ +|+.+++.+..-|+. .|+. ++...++ .++++.+++.+..... -+..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3455554 677777777653322 2332 2222332 4678888888887422 2566787777777
Q ss_pred hccC--CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhc----
Q 009782 401 AHLG--SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL-IDEAYSMIVEKMEFEAS-PVVWGALLYACYLH---- 472 (526)
Q Consensus 401 ~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---- 472 (526)
...+ .++++..+++.+.+. -+-|...|+.-...+...|. ++++++.+.+.+...|. ...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 7777 489999999999975 34477888777777788888 58999999889988884 47787777776655
Q ss_pred ----------CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-----------CChHHHHHHHHHHHhC
Q 009782 473 ----------GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNA-----------GRLDDVERVERMLVDR 522 (526)
Q Consensus 473 ----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~ 522 (526)
+.++++++.+.+++...|+|..+|+.+-.++.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999888888877 5678899888888754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=59.18 Aligned_cols=65 Identities=8% Similarity=-0.131 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELE 489 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 489 (526)
+...+..+...|...|++++|+..|.+.+...|+ ...|..+..+|...|++++|++.+++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3444455555555555555555555445544443 2445555555555555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00023 Score=68.48 Aligned_cols=26 Identities=8% Similarity=-0.067 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 263 YNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
+..+...|...|++++|.+.+..+..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677777788888888777776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=78.69 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
+..+...+.+.|++++|++.|.+++...|+ ...+..+..++.+.|++++|++.+++++++.|+++.++..++.+|.+.|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455677899999999999999988886 5889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 009782 508 RLDDVERVERMLVDRG 523 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g 523 (526)
++++|.+.+++..+..
T Consensus 89 ~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 89 KFRAALRDYETVVKVK 104 (477)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999987643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=7.5e-05 Score=74.16 Aligned_cols=138 Identities=12% Similarity=-0.005 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-ChHHHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLTFVSLLSACAHLG--SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG-LIDEAYS 447 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~ 447 (526)
.+++++.++.+.+... -+..+|..-...+.+.+ +++++.+.++++.+. -+-|...|+.-..++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 6788888888887432 25568888888888888 779999999999985 3347888888888888888 8999999
Q ss_pred HHHhhcCCCCC-HHHHHHHHHHHHhc--------------CChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH
Q 009782 448 MIVEKMEFEAS-PVVWGALLYACYLH--------------GNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 448 ~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (526)
.+.+++...|+ ...|+.....+.+. +.++++++.+++++.++|++..+|..+..++.+.|++++
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99899999995 48888877776663 557999999999999999999999999999999888554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=6.3e-06 Score=65.39 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=75.9
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh----------HHHHHHHHhhcCCCCCH-HHHHHHHHHH
Q 009782 401 AHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLI----------DEAYSMIVEKMEFEASP-VVWGALLYAC 469 (526)
Q Consensus 401 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~-~~~~~l~~~~ 469 (526)
.+.+.+++|.+.++...+. -+.+...|..+..++...+++ ++|+..|.+++.++|+. ..|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3456678888888888864 233778888888888887764 59999999999999965 8899999999
Q ss_pred HhcC-----------ChHHHHHHHHHHHccCCCCcc
Q 009782 470 YLHG-----------NVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 470 ~~~g-----------~~~~a~~~~~~~~~~~p~~~~ 494 (526)
...| ++++|++.|+++++++|++..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 8774 899999999999999999765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00015 Score=69.75 Aligned_cols=128 Identities=9% Similarity=-0.032 Sum_probs=71.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhhc------CCCCC-HHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRV----EHYACMVNLYGRAGLIDEAYSMIVEKM------EFEAS-PVV 461 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~p~-~~~ 461 (526)
+..+...|...|++++|.+++..+....+..++. ...+.+...+...|+.++|.+++.+.+ +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666677777777777666665432222221 122333334445566666666664333 22222 255
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcc------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFEL------EPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+..+...+...|++++|...++++... .|....++..++.+|...|++++|..++++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 566666677777777777777666542 11123356666777777777777777666554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.9e-05 Score=58.92 Aligned_cols=77 Identities=8% Similarity=-0.005 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 444 EAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 444 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+|++.|.+.+...|+ ...+..+...+...|++++|+..+++++++.|.+..+|..++.+|...|++++|.+.|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555553 35555666666666666666666666666666666666666666666666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00022 Score=56.12 Aligned_cols=112 Identities=8% Similarity=-0.099 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 009782 404 GSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL----HGNVCMGE 479 (526)
Q Consensus 404 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 479 (526)
+++++|.+.|++..+. | .|+.. |...|...+.+++|.+.|.++... .++..+..|...|.. .++.++|.
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3556666777666654 3 22222 556666666666677777555542 455566666666666 66777777
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 009782 480 TAAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 524 (526)
+.++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777665 345667777777777 6777777777777766653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.3e-05 Score=61.77 Aligned_cols=58 Identities=19% Similarity=0.031 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 231 VLNALVDMYAKCGDIVKARTVFDRIGN-----KD----LISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
.+..+...+...|++++|.+.+++..+ .+ ..++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444555555555555555544321 11 13455566666666777777766666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00023 Score=70.63 Aligned_cols=148 Identities=10% Similarity=0.008 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 009782 372 HEALIYFEQMERDGVLPDH-LTFVSLLSACAHLGS----------VKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG 440 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 440 (526)
++|++.++++.. +.|+. ..|+.--.++...|+ ++++.+.++.+.+. .+-+...|..-..++.+.|
T Consensus 46 eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 46 ESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 678888888888 55654 466666666666666 89999999999975 3447788888888888889
Q ss_pred --ChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhc----------
Q 009782 441 --LIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHG-NVCMGETAAQKLFELEPDNEHNFELLIKIYGNA---------- 506 (526)
Q Consensus 441 --~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------- 506 (526)
+++++++.+.+++..+|. ...|+.-...+.+.| .++++++.++++++.+|.|..+|+..+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999889988884 588888888888889 899999999999999999999999999998885
Q ss_pred ----CChHHHHHHHHHHHhCC
Q 009782 507 ----GRLDDVERVERMLVDRG 523 (526)
Q Consensus 507 ----g~~~~A~~~~~~m~~~g 523 (526)
++++++.+.+++.....
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHhhC
Confidence 56789999988877543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.5e-05 Score=56.33 Aligned_cols=66 Identities=8% Similarity=-0.044 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+...+..+...+...|++++|+..+++++++.|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456778889999999999999999999999999999999999999999999999999999988654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.7e-05 Score=71.87 Aligned_cols=88 Identities=9% Similarity=-0.043 Sum_probs=72.5
Q ss_pred HHHHhcCChHHHHHHHHhhc--------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---chH
Q 009782 434 NLYGRAGLIDEAYSMIVEKM--------EFEASP-VVWGALLYACYLHGNVCMGETAAQKLFE-----LEPDNE---HNF 496 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~ 496 (526)
..+...|++++|+.++.+.+ ...|+. .+++.|..+|...|++++|+.+++++++ +.|+++ .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999986655 234444 7899999999999999999999999987 345554 458
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 497 ELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 497 ~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
+.|+.+|...|++++|..++++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=52.19 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhcCC---hHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 425 RVEHYACMVNLYGRAGL---IDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
|...+..+..++...++ .++|..++.+.+..+|+. ..+..+...+.+.|++++|+..|+++++..|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455555555543332 455555555555555533 44444555555555555555555555555555
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=9e-05 Score=70.52 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFE-----LEPDNE---HNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.+++.+..+|...|++++|+.+++++++ ..|+++ .+++.|+.+|..+|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5556666666666666666666666654 233333 346666666666666666666666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.75 E-value=4.8e-05 Score=56.06 Aligned_cols=62 Identities=24% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 459 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
...+..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777777777777777777777664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00016 Score=51.77 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 459 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46778888899999999999999999999999999999999999999999999999999987643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00024 Score=67.76 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---chHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFE-----LEPDNE---HNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+++.+..+|...|++++|+.+++++++ ..|+++ .+++.|+.+|...|++++|..++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344444444444444444444444443 122222 22444455555555555555444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00028 Score=51.57 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHhhcCCCCCH-H-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 432 MVNLYGRAGLIDEAYSMIVEKMEFEASP-V-VWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
....+.+.|++++|++.+.+.+...|+. . .+..+..++...|++++|++.+++++++.|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556667788888888887777767744 5 677777777788888888888888888888777655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00072 Score=64.30 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=74.8
Q ss_pred ccCCHHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc--------CCCCCH-HHHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKY--GISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM--------EFEASP-VVWGALL 466 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~~~~l~ 466 (526)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++.+.+ ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999998877642 1223 25778899999999999999999996665 345655 7899999
Q ss_pred HHHHhcCChHHHHHHHHHHHc-----cCCCCcch
Q 009782 467 YACYLHGNVCMGETAAQKLFE-----LEPDNEHN 495 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 495 (526)
..|...|++++|+.+++++++ +.|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 46777653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.067 Score=53.11 Aligned_cols=266 Identities=11% Similarity=0.031 Sum_probs=130.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHH
Q 009782 233 NALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIG 311 (526)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a 311 (526)
+..+..+.+.+++.....++.. ...+...-.....+....|+..+|....+++-..|- .|+. +
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~---------------c 139 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA---------------C 139 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH---------------H
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHH---------------H
Confidence 4445566677777777776665 333444445566677777877777776666655542 2332 2
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 009782 312 AQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHL 391 (526)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~ 391 (526)
..++..+.+.|.-.+..++. -+......|+...|..+...+..........++....+...+...... +.|+..
T Consensus 140 ~~l~~~~~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~ 213 (618)
T 1qsa_A 140 DKLFSVWRASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDF 213 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHH
T ss_pred HHHHHHHHHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChh
Confidence 33444444444333323332 335556667777777766665322222223333333333333332211 122222
Q ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 009782 392 ---TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVE--HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALL 466 (526)
Q Consensus 392 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 466 (526)
.+...+.-+.+ .+.+.|...+........+.+... ....+...+...+...++...+.+.....++.....-.+
T Consensus 214 ~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 292 (618)
T 1qsa_A 214 TRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHH
Confidence 12222222333 366777777766654422322211 122233333334434445555533333333333333333
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
....+.|+++.|...++.+-.-.+..+....-+++++...|+.++|..+|.++..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344567777777777665543223344455666677777777777777766643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0083 Score=45.05 Aligned_cols=84 Identities=7% Similarity=-0.035 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 439 AGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
+|+.......+ -.+ ..+....+..+.....+|+-+.-.+++..++..++.++.....++.+|.+.|+..+|.+++.+
T Consensus 74 C~NlKrVi~C~-~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 74 CQNLKSVVECG-VIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp CSCTHHHHHHH-HHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcHHHHHHHH-HHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44445444444 222 344556677788888999999999999998777777788899999999999999999999999
Q ss_pred HHhCCCC
Q 009782 519 LVDRGLE 525 (526)
Q Consensus 519 m~~~g~~ 525 (526)
.-++|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 9999974
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00036 Score=50.98 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPDNEH-NFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
....+...|++++|+..++++++..|+++. ++..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788999999999999999999999999 99999999999999999999999987654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0016 Score=62.07 Aligned_cols=100 Identities=9% Similarity=0.007 Sum_probs=79.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHHHhcCChHHHHHHHHhhc--------CCCCCH-HH
Q 009782 397 LSACAHLGSVKVGERLFSVMVEKY--GISP----RVEHYACMVNLYGRAGLIDEAYSMIVEKM--------EFEASP-VV 461 (526)
Q Consensus 397 l~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~p~~-~~ 461 (526)
+..+.+.|++++|+..+++..+.. -+.| ...+++.|+.+|...|++++|+.++.+.+ ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999987531 1223 25678899999999999999999996655 345555 78
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCcchH
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFE-----LEPDNEHNF 496 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 496 (526)
++.|...|...|++++|+.+++++++ +.|+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 89999999999999999999999987 468776643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0012 Score=47.35 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 458 SPVVWGALLYACYLHGN---VCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
++..+..+..++...++ .++|..+++++++++|+++.+...++..+.+.|+|++|...|+++.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55777777777765554 68999999999999999999999999999999999999999999887653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0031 Score=57.59 Aligned_cols=71 Identities=20% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 009782 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNE 493 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (526)
+.+...|..+...+...|++++|...+.+++..+|+...|..+...+.-.|+.++|.+.+++++.++|..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 44677777777777777888888888888887778777777777788888888888888888888888754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.008 Score=46.97 Aligned_cols=114 Identities=11% Similarity=-0.074 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cCCh
Q 009782 67 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FGLI 142 (526)
Q Consensus 67 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~ 142 (526)
.-.+++++|++.+++..+.| ++... +-..+...+.+++|.+.|+...+.| +...+..|...|.. .+++
T Consensus 6 g~~~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCccCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 34566777777777777666 22222 4444444555666666666666653 44555555555555 5566
Q ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 009782 143 DEAHQVFDQMSNRTAFAFPWNSLISGYAE----LGEYEDAIALYFQMEEEG 189 (526)
Q Consensus 143 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 189 (526)
++|.+.|++..+.+. +.++..|...|.. .+++++|...|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666655544321 2344444445544 455555555555554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=58.14 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhc-----CChHHHHHHHHhhcCCCCC--HHHHHHHHHHHHh-cCC
Q 009782 406 VKVGERLFSVMVEKYGISPR---VEHYACMVNLYGRA-----GLIDEAYSMIVEKMEFEAS--PVVWGALLYACYL-HGN 474 (526)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~-~g~ 474 (526)
...|...++++.+ +.|+ -..|..|...|.+. |+.++|.+.|++++.++|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4555666666654 3554 45677777777763 7777777777777777773 4666666666666 377
Q ss_pred hHHHHHHHHHHHccCCCC-cchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 475 VCMGETAAQKLFELEPDN-EHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
.+++.+.+++++...|.. +. . .+...+.-++|..+++++
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~----~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--N----KLLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--C----HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--h----hHHHHHHHHHHHHHHHHh
Confidence 777777777777766652 22 1 223333445565555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0019 Score=50.53 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHHhhcCCC-C--CHHHHHHHHHHHHhcCChHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAG---LIDEAYSMIVEKMEFE-A--SPVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a 478 (526)
....+++.|.+..+. + .++..+...+..++++.+ +.++++.++.+.+... | ....+-.+..++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345556666666553 3 367777777888888877 5668888886666655 6 236667777888999999999
Q ss_pred HHHHHHHHccCCCCcchHH
Q 009782 479 ETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~ 497 (526)
.++++.+++++|++..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998876443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0035 Score=46.19 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhhcCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 425 RVEHYACMVNLYGRAGLIDEAYSMIVEKMEF--------EASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
+..-+..|...+.+.|++..|...|.+++.. .+....+..+..++.+.|+++.|...+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4455567788888888888888888665531 12347788888899999999999999999999999987765
Q ss_pred HHHH
Q 009782 497 ELLI 500 (526)
Q Consensus 497 ~~l~ 500 (526)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.01 Score=54.25 Aligned_cols=134 Identities=6% Similarity=-0.029 Sum_probs=69.3
Q ss_pred CCCChhhHHHHHHHHHc--cC---ChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh---cC-----Chh---HHHHHHh
Q 009782 87 ITVQTETFASLLETCYQ--LK---AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT---FG-----LID---EAHQVFD 150 (526)
Q Consensus 87 ~~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g-----~~~---~a~~~~~ 150 (526)
.+.+...|...+++... .+ +..+|..+|++.++.. |.....+..+..+|.. .+ ... .+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 34466777777765442 22 2466777777777653 2233444433333321 01 000 1111111
Q ss_pred ccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 009782 151 QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRF 223 (526)
Q Consensus 151 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 223 (526)
.+.....++.+|..+...+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111122233555555555555667777777776666653 55555555566666667777777666666655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.021 Score=42.87 Aligned_cols=96 Identities=14% Similarity=0.003 Sum_probs=70.8
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH---HHHHHHhhcCCC-CC-H-HHHHHHHHHHHhcC
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDE---AYSMIVEKMEFE-AS-P-VVWGALLYACYLHG 473 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p~-~-~~~~~l~~~~~~~g 473 (526)
-........+.+-+...... |. ++..+-..+..++.+.++..+ ++.++.+.+... |. . ...-.|.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 33344455666666666554 43 677777778888888887666 888887777665 52 2 56667778899999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHH
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
+++.|.+.++.+++++|+|..+..
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999877443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0045 Score=48.44 Aligned_cols=82 Identities=7% Similarity=-0.057 Sum_probs=65.9
Q ss_pred hHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccC-C-CCcchHHHHHHHHHhcCChHHHHHH
Q 009782 442 IDEAYSMIVEKMEF-EASPVVWGALLYACYLHG---NVCMGETAAQKLFELE-P-DNEHNFELLIKIYGNAGRLDDVERV 515 (526)
Q Consensus 442 ~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (526)
...+.+.|.+.... .++..+.-.+..++.+++ +.++++.+++.+++.. | .+...+..|+.+|.+.|+|++|.+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34555666444432 357788888999999988 6779999999999988 6 4577899999999999999999999
Q ss_pred HHHHHhCC
Q 009782 516 ERMLVDRG 523 (526)
Q Consensus 516 ~~~m~~~g 523 (526)
++.+.+..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.074 Score=55.52 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=13.8
Q ss_pred HHHHHHhcCChHHHHHHhccCC
Q 009782 333 LIVVYSKDGKLDQACWLFDHMP 354 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~ 354 (526)
...+|.+.|++++|.+++.++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHcC
Confidence 3445666677777777666544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.12 Score=53.88 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCC
Q 009782 95 ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGE 174 (526)
Q Consensus 95 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 174 (526)
..++..+.+.|.++.|.++.+. . ..-.......|++++|.++.+.+... ..|..+...+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~~~----~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDESAE----MKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCCCH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhCcH----hHHHHHHHHHHHcCC
Confidence 5555555666666666654421 1 11133345677888887777665322 568888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009782 175 YEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDR 254 (526)
Q Consensus 175 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 254 (526)
++.|.+.|..+.. |..+...+...|+.+...++.+.....| -++.-..+|.+.|++++|.+++.+
T Consensus 697 ~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 697 FKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877653 4455555555677666666555555444 123344455566777777665555
Q ss_pred cC
Q 009782 255 IG 256 (526)
Q Consensus 255 ~~ 256 (526)
+.
T Consensus 762 ~~ 763 (814)
T 3mkq_A 762 SQ 763 (814)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.36 E-value=1.3e-06 Score=80.83 Aligned_cols=262 Identities=14% Similarity=0.143 Sum_probs=164.4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 009782 160 FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMY 239 (526)
Q Consensus 160 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 239 (526)
..|..|..+....+++.+|++.|-+. -|...|..++.++.+.|.+++-.+.+....+..- +...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 66888888888888888877655332 2556677888888888888887777766555422 333335677788
Q ss_pred HhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVL 319 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~ 319 (526)
++.++..+.++++. .||+.-...+..-|...|.++.|.-+|..+-.
T Consensus 127 Ak~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN------------------------------- 172 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------------------------- 172 (624)
T ss_dssp HTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------------------------------
T ss_pred HhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------------------------------
Confidence 88777655443332 25665666667777777777776666554322
Q ss_pred HhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009782 320 RRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSA 399 (526)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 399 (526)
|..|..++.+.|++..|.+.-++.. +..||-.+-.+
T Consensus 173 ----------~akLAstLV~L~~yq~AVdaArKAn----------------------------------s~ktWKeV~~A 208 (624)
T 3lvg_A 173 ----------FGRLASTLVHLGEYQAAVDGARKAN----------------------------------STRTWKEVCFA 208 (624)
T ss_dssp ----------CTTTSSSSSSCSGGGSSTTTTTTCC----------------------------------SSCSHHHHTHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHhcC----------------------------------ChhHHHHHHHH
Confidence 1234445556666665544333322 44567777778
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCChHHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 478 (526)
|...+.+..|.-.--.+. +.|| ....++..|-+.|.+++-+.+++..+|..- ....|+.|.-.|++- +.++.
T Consensus 209 Cvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHH
Confidence 888777766654433332 1222 233466778888888888888877777544 447777777777765 34444
Q ss_pred HHHHHHHHc-cC-CC------CcchHHHHHHHHHhcCChHHHHH
Q 009782 479 ETAAQKLFE-LE-PD------NEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 479 ~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
.+.++..+. ++ |. ....|..++-.|.+-..|+.|..
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 444444333 22 32 45668888888888888887754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.012 Score=51.46 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhc-C
Q 009782 372 HEALIYFEQMERDGVLPD---HLTFVSLLSACAHL-----GSVKVGERLFSVMVEKYGISP--RVEHYACMVNLYGRA-G 440 (526)
Q Consensus 372 ~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 440 (526)
.+|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+. .| +..++..+.+.+++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 557777777777 5666 34677777777774 8888888888888854 55 367777778888774 8
Q ss_pred ChHHHHHHHHhhcCCCCC
Q 009782 441 LIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 441 ~~~~A~~~~~~~~~~~p~ 458 (526)
+.++|.+.+.+.+...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888777766555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.37 Score=38.68 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=75.3
Q ss_pred HHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHH
Q 009782 133 LRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 212 (526)
Q Consensus 133 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 212 (526)
......+|+++.|.++.+.+.. ...|..|.......|+++-|.+.|..... +..+.-.|...|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLND----SITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhCC----HHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3344566777777777666522 25677777777777777777777777643 3444445555667666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 009782 213 GEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGM 286 (526)
Q Consensus 213 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (526)
..++-+.....| -++.-...+.-.|+++++.++|.+..+.. .-+......|..+.|.++.+++
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 665555555444 13444455556777777777776655411 1111112245556666665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.026 Score=41.41 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELE-------PDNEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+..-.-.++..+...|+++.|...++.+++.. +....++..|+.+|.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678889999999999999999998742 334567999999999999999999999988754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0024 Score=59.63 Aligned_cols=211 Identities=10% Similarity=0.043 Sum_probs=120.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 009782 56 PLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRL 135 (526)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 135 (526)
+..|..++....+.|.+++.+..+...++..- ++..=+.++-+|++.++..+-.+++ -.||..-...+.+-
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 33455555555566666666666655544422 3333445666666666654333222 13444444555555
Q ss_pred HHhcCChhHHHHHHhccccC----------------------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 009782 136 YATFGLIDEAHQVFDQMSNR----------------------TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPD 193 (526)
Q Consensus 136 ~~~~g~~~~a~~~~~~~~~~----------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 193 (526)
|...|.++.|.-+|..+.+- -.++.+|..+-.+|...+.+.-|.-.--.+. +.||
T Consensus 154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad 230 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD 230 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS
T ss_pred HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH
Confidence 66666666666665544221 1124677777777777777776655443333 1222
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CCccc
Q 009782 194 QFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-----------KDLIS 262 (526)
Q Consensus 194 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~ 262 (526)
-...++..|-..|.+++...+++..... -.....+|+.|.-.|++- +.++..+.++..-. .....
T Consensus 231 --eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 --ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp --CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 2234556677778888877777765522 144567788888888765 45555555544322 23467
Q ss_pred HHHHHHHHHhCCChHHHHHH
Q 009782 263 YNSMLTGYIHHGLLVEAFDI 282 (526)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~ 282 (526)
|..++-.|.+-.++|.|...
T Consensus 307 W~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHhcchhHHHHHHH
Confidence 88888888888888877543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.057 Score=54.64 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=79.6
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHHhcC-ChHHHHHHHHhhcC--------CCCCH--
Q 009782 394 VSLLSACAHLGS-VKVGERLFSVMVEKYGISPRVEHY--ACMVNLYGRAG-LIDEAYSMIVEKME--------FEASP-- 459 (526)
Q Consensus 394 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~--------~~p~~-- 459 (526)
..++..+...++ .+.|..+|+++.+. .|....+ ..++..+...+ +--+|.+++.+.+. ..+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 445555555555 57788888888764 3432222 22233222222 22345555544431 11111
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 460 ---------VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 460 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
..+..-...|...|+++.|+++.+++...-|.+-.+|..|+.+|...|+|+.|+-.+.-+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 123333445778999999999999999999999999999999999999999999887765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.41 Score=38.45 Aligned_cols=131 Identities=9% Similarity=0.099 Sum_probs=93.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHH
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYED 177 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 177 (526)
+......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+. .-+..+.-.|...|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-------~D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ-------HSFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-------TCHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh-------CCHHHHHHHHHHhCCHHH
Confidence 34455778999999987765 46778999999999999999999999988 346777777888888877
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 178 AIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 178 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
-.++-+.....| -++.....+...|+++++.++|.+. |--|... -.....|..+.|.++.+.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 776666655554 2666677777889999999887543 2212111 11123567777888876654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.61 E-value=1.5 Score=41.68 Aligned_cols=263 Identities=8% Similarity=0.012 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHhhC-----CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-hccCCChhHHHHHHHHH----Hh
Q 009782 69 LQALDSIIQDLESSVQN-----GITVQTETFASLLETCYQLKAVEHGIKLHRLIPT-NLLRKNKGISSKLLRLY----AT 138 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~----~~ 138 (526)
.++++.|++.+-.+.+. +...+......++..|...++++...+.+..+.+ +|... .....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 47888898887666542 2344566788889999999999988887776654 33222 2223333332 22
Q ss_pred cCChh--HHHHHHhccccC---CCCc-----ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----chHHHHHHH
Q 009782 139 FGLID--EAHQVFDQMSNR---TAFA-----FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQ-----FTFPRVLKA 203 (526)
Q Consensus 139 ~g~~~--~a~~~~~~~~~~---~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~ 203 (526)
....+ .-..+.+.+... .... .....|...+...|++.+|.+++..+...-...+. ..+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33222 233344433222 1111 11345677788888888888888887643112222 245556666
Q ss_pred HhccCChHHHHHHHHHHHHh----CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChH
Q 009782 204 CAGLGLIRVGEKVHLDAVRF----GFGFD--GFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLV 277 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 277 (526)
|...+++..|..++..+... ...|+ ...+...+..+...+++.+|-+.|.+ +...+...++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e-----------~~~~~~~~~d~~ 255 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE-----------IYQTDAIKSDEA 255 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHSCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------HHhcccccCCHH
Confidence 77777777777777665321 11222 12344555555566666666654433 222333333333
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc--CChHHHHHHhccCCC
Q 009782 278 EAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKD--GKLDQACWLFDHMPQ 355 (526)
Q Consensus 278 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 355 (526)
.....+..+.- ..++...+ ..-..+.........-++...+..++.+|... .+++...+.|.....
T Consensus 256 ~~~~~L~~~v~----------~~iLa~~~--~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 256 KWKPVLSHIVY----------FLVLSPYG--NLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHHHHH----------HHHHSSCS--STTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHHHHHH----------HHHhCCCC--chHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 32222222110 00010001 11111122222222234566778888888764 467888888877654
Q ss_pred C
Q 009782 356 K 356 (526)
Q Consensus 356 ~ 356 (526)
+
T Consensus 324 ~ 324 (445)
T 4b4t_P 324 E 324 (445)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.078 Score=40.90 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHHHHhcCCCCch-hHHHHHHHH------HHhcCChHHHHHHHHhhcCC
Q 009782 389 DHLTFVSLLSACAHLGSV------KVGERLFSVMVEKYGISPRV-EHYACMVNL------YGRAGLIDEAYSMIVEKMEF 455 (526)
Q Consensus 389 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~ 455 (526)
|..+|-..+....+.|+. ++..++|+++.. .++|+. ..|...+.. +...++.++|.++|..++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566888888888888998 888999999987 577753 222333322 23457889999999555432
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 456 EA-SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 456 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
.. -...|......-.++|+...|.+++.+++.+.|.+...+...+.-+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 11 1466666666778899999999999999999988777676666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.21 Score=38.58 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=58.5
Q ss_pred cCCc------hHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 368 HSKD------HEALIYFEQMERDGVLPDHL----TFVSLLS---ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 368 ~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
.|+. ++..++|++.... ++|+.. .|..+-- .+...+++++|.++|+.+.+. +-.- ...|....+
T Consensus 26 ~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-hKkF-AKiwi~~Aq 102 (161)
T 4h7y_A 26 NSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-CKKF-AFVHISFAQ 102 (161)
T ss_dssp HTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-CTTB-HHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hHHH-HHHHHHHHH
Confidence 4666 6666777776663 566532 1111111 112337788888888888664 3222 666666666
Q ss_pred HHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 009782 435 LYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLY 467 (526)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~ 467 (526)
.-.+.|++..|.+++.+++|..|.+ ..+...+.
T Consensus 103 FEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 103 FELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6678888888888887788777754 44443333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.18 Score=37.89 Aligned_cols=84 Identities=7% Similarity=-0.131 Sum_probs=63.2
Q ss_pred CChHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHccC-C-CCcchHHHHHHHHHhcCChHHHH
Q 009782 440 GLIDEAYSMIVEKME-FEASPVVWGALLYACYLHGNVCM---GETAAQKLFELE-P-DNEHNFELLIKIYGNAGRLDDVE 513 (526)
Q Consensus 440 g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~ 513 (526)
.....+.+.|.+... -.|+..+--.+.+++.++++... ++.+++.+++.. | ........|+-++.+.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334455555544432 23677777778889988887666 999999998876 5 35566888999999999999999
Q ss_pred HHHHHHHhCC
Q 009782 514 RVERMLVDRG 523 (526)
Q Consensus 514 ~~~~~m~~~g 523 (526)
+.++.+.+.-
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.14 Score=47.89 Aligned_cols=60 Identities=20% Similarity=0.048 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
...++..+...|+.+++...++.++...|-+...|..++.+|.+.|+..+|.+.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677788888888888888888888888888888888888888888888877654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.34 Score=36.55 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=41.8
Q ss_pred CchhHHHHHHHHHHhcCCh---HHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 424 PRVEHYACMVNLYGRAGLI---DEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
|+..+--.+..++.+..+. .+++.++.+.....|.. ..+-.+.-++.+.|+++.|.++.+.+++++|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3444444455555555543 34555554444444522 45555666677777777777777777777777655
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.72 Score=35.28 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHHhcCCh---HHHHHHHHhhcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcch
Q 009782 423 SPRVEHYACMVNLYGRAGLI---DEAYSMIVEKMEFEAS-P-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHN 495 (526)
Q Consensus 423 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (526)
.|+..+--.+..++.+..+. .+++.++.+.....|+ . ...-.+.-++.+.|++++|.++.+.+++++|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45555555666666666543 3456666555554553 2 455556667888888888888888888888887653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.66 E-value=1.7 Score=32.83 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=68.8
Q ss_pred hHHHHHHH--HHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC---------------
Q 009782 93 TFASLLET--CYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR--------------- 155 (526)
Q Consensus 93 ~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------- 155 (526)
+...++.| ..-.|..++..++..+..... +..-+|-+|--....-+-+...++++.+...
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C 83 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHH
Confidence 33444443 233566777777666665532 3333333333333333333333443333211
Q ss_pred ----CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 156 ----TAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 156 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
+.+....+..++.+...|+-++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 11113345556666667777777777766433 2356666666677777777777777777777776664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.75 Score=35.18 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGN---VCMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
....+-|.+..+-.|+..+--.+.+++.++.+ ..+++.+++.+++..|. .......|+-++.+.|+|++|.++.+.
T Consensus 23 ~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 23 EILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444553443446777777778888888775 45788999999988774 455678889999999999999999999
Q ss_pred HHhCC
Q 009782 519 LVDRG 523 (526)
Q Consensus 519 m~~~g 523 (526)
+.+.-
T Consensus 103 lL~~e 107 (144)
T 1y8m_A 103 LFEHE 107 (144)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 87654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.07 E-value=0.59 Score=33.07 Aligned_cols=62 Identities=10% Similarity=0.242 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
.-++.+-++.+....+.|++....+.+++|.|.+++..|.++++-+...- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34566677777777888888888888888888888888888888776543 233456766664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.35 E-value=0.65 Score=35.02 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHccCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 009782 443 DEAYSMIVEKMEFEASPVVWGALLYACYLHGNV---CMGETAAQKLFELEPD-NEHNFELLIKIYGNAGRLDDVERVERM 518 (526)
Q Consensus 443 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (526)
....+.|.+..+-.|+..+--.+.+++.++.+. ..++.+++.+++..|. ....+..|+-++.+.|+|++|.+..+.
T Consensus 24 ~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 24 EILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455534334456777766778888887754 5788999999988874 456688899999999999999999999
Q ss_pred HHhCC
Q 009782 519 LVDRG 523 (526)
Q Consensus 519 m~~~g 523 (526)
+.+.-
T Consensus 104 lL~~e 108 (134)
T 3o48_A 104 LFEHE 108 (134)
T ss_dssp HHTTC
T ss_pred HHhhC
Confidence 87653
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.58 E-value=2.1 Score=30.16 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
.-++|..+-+++...+. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.. .|-.+++...+.++..+|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 44566666666666554 333333445678899999999999999999999999998887 677777777777777665
Q ss_pred CCCCHHHH
Q 009782 386 VLPDHLTF 393 (526)
Q Consensus 386 ~~p~~~~~ 393 (526)
.|....|
T Consensus 99 -~p~~q~F 105 (115)
T 2uwj_G 99 -DPALADF 105 (115)
T ss_dssp -SHHHHHH
T ss_pred -CHHHHHH
Confidence 3333333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.43 E-value=2.2 Score=30.07 Aligned_cols=77 Identities=9% Similarity=0.132 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHh-cCCchHHHHHHHHHHHCC
Q 009782 307 LLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHA-HSKDHEALIYFEQMERDG 385 (526)
Q Consensus 307 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~~~m~~~~ 385 (526)
.-++|..+-+++...+. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.. .|-.+++...+.++..+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 44566666666666554 333333445678899999999999999999999999888877 677777777777776654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.28 E-value=3.1 Score=42.18 Aligned_cols=126 Identities=10% Similarity=0.010 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCC-hhHHHHHHhccccCCCCcccH--HHHHHHHHhcC-ChHHHHHHHHHHHHc------CCCCCcc----
Q 009782 130 SKLLRLYATFGL-IDEAHQVFDQMSNRTAFAFPW--NSLISGYAELG-EYEDAIALYFQMEEE------GVEPDQF---- 195 (526)
Q Consensus 130 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~--~~li~~~~~~~-~~~~a~~~~~~m~~~------~~~p~~~---- 195 (526)
..++..+...|+ .+.|..+|+++...+|....+ ..++..+.+.+ +--+|..++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 578999999988877744322 22333332222 233556665554321 1222211
Q ss_pred -------hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 196 -------TFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 196 -------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
....=.+.|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111234567899999999999988763 5567799999999999999999999999886
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=90.62 E-value=8.2 Score=38.52 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh---cC
Q 009782 265 SMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSK---DG 341 (526)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g 341 (526)
.....+.-.|+++.|.+.+-.. ...+.+.+...+..+|-+.....++..- .+ .| ..-+..||..|.+ ..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKIDSSTRLTK--KP-KR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccCCCcccccC--CC-cc-cccHHHHHHHHHHHhhcC
Confidence 3556777889999999987754 3577788888888776665411111110 00 11 2224567777764 46
Q ss_pred ChHHHHHHhccC
Q 009782 342 KLDQACWLFDHM 353 (526)
Q Consensus 342 ~~~~A~~~~~~~ 353 (526)
+..+|.+.|--+
T Consensus 371 d~~~Al~Y~~li 382 (661)
T 2qx5_A 371 DPRVAVEYLVLI 382 (661)
T ss_dssp CHHHHHHHHHGG
T ss_pred CHHHHHHHHHHH
Confidence 677777766544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.55 E-value=2.3 Score=33.55 Aligned_cols=26 Identities=12% Similarity=-0.069 Sum_probs=21.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 494 HNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
..-.-+..+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 44566899999999999999998764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.29 E-value=9.8 Score=34.13 Aligned_cols=169 Identities=16% Similarity=0.195 Sum_probs=105.4
Q ss_pred hHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 009782 328 CIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE----ALIYFEQMERDGVLPDHLTFVSLLSACAHL 403 (526)
Q Consensus 328 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 403 (526)
.+|.++..-|.+.+++++|.+++..- ...+...++... +.-+++-..+.++++|......++..+...
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G--------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV--------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH--------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34567778899999999999987531 112222455533 444556667788999998888888877765
Q ss_pred CCHH-HHHHHHHHHHH---hcCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHH
Q 009782 404 GSVK-VGERLFSVMVE---KYGI--SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCM 477 (526)
Q Consensus 404 ~~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 477 (526)
..-+ .=..+++++.+ ++|- .-|+.....+...|.+.+++.+|..-| ..+.++.+..+..++..+...+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--HhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 4311 11222222221 1242 337888889999999999999999888 24555555777777766665544222
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 478 GETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
+- ......+--|...|+...|..+++...
T Consensus 186 ~d--------------lfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 AP--------------LYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH--------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 21 112233445666778888877666554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.03 E-value=3.7 Score=28.89 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 208 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777777653 33332333456778999999999999999999999877654 57888888888888887
Q ss_pred HcCCCCcHHHHHH
Q 009782 288 LNGFDPDPVAISS 300 (526)
Q Consensus 288 ~~~~~p~~~~~~~ 300 (526)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.96 E-value=1.7 Score=32.68 Aligned_cols=59 Identities=10% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHH
Q 009782 74 SIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLL 133 (526)
Q Consensus 74 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 133 (526)
++.+-++.+....+.|++......+++|.+.+++..|.++++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 445555566666677777777777777777777777777777665432 23344565555
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.85 E-value=11 Score=33.89 Aligned_cols=165 Identities=12% Similarity=0.131 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCcHHHHHHHHHHh
Q 009782 230 FVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDI----FRGMILNGFDPDPVAISSILANA 305 (526)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~ 305 (526)
.+|.++..=|.+.+++++|.+++-. -...+.+.|+...|-++ ++-..+.++++|......++.-+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677778889999999987644 23456666776665554 35556678888887776666555
Q ss_pred --------hhhHHHHHHHHHHHHhC--CCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHH
Q 009782 306 --------SLLRIGAQVHGWVLRRG--VEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEAL 375 (526)
Q Consensus 306 --------~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~ 375 (526)
.+..-......+-.+.| ..-++.....+...|.+.+++.+|...|-.-.++....+..++
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL---------- 174 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME---------- 174 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH----------
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH----------
Confidence 12223334444445544 3457788889999999999999999988532222223433322
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 009782 376 IYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVE 418 (526)
Q Consensus 376 ~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 418 (526)
++...+.+ ..++...-..++ -|...++...|...++...+
T Consensus 175 --~ew~~~~~~~e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 175 --YEWYKQDESHTAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --HHHHHTSCGGGHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHhcCCccHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 22223322 112222233333 35566899999887777665
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.83 E-value=3.9 Score=28.84 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 009782 208 GLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMI 287 (526)
Q Consensus 208 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (526)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777777653 33332333456778999999999999999999999877655 46788888888887777
Q ss_pred HcCCCCcHHHHHH
Q 009782 288 LNGFDPDPVAISS 300 (526)
Q Consensus 288 ~~~~~p~~~~~~~ 300 (526)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.45 E-value=1.8 Score=30.68 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+....+ ..+...+|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 45556666667778999999999999999999999999999998875 33445567776653
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.04 E-value=3.6 Score=33.67 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 473 GNVCMGETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 473 g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
++..++..+|..+.. ++..-+..|...+..|...|++.+|.++|+.-.+++-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334455555555544 334444445566666666666666666666655555443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.32 E-value=2.7 Score=36.17 Aligned_cols=111 Identities=10% Similarity=0.080 Sum_probs=63.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCC
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP----VVWGALLYACYLHGN 474 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 474 (526)
...+.|+++++++....-++. -+-|...-..|++.+|-.|+++.|..-+.-.....|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 456677777777777776653 44467777777788888888888877774444555654 234444433
Q ss_pred hHHHHHHHHHHHcc-----CCCC-cchHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 009782 475 VCMGETAAQKLFEL-----EPDN-EHNFELLIKIYG--NAGRLDDVERVERMLVD 521 (526)
Q Consensus 475 ~~~a~~~~~~~~~~-----~p~~-~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 521 (526)
+..=++++.- .+.. +.-...|+.++. ..|+.++|.++-.++.+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 2222223321 1111 122444555544 35777777777666643
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=5 Score=34.95 Aligned_cols=51 Identities=16% Similarity=-0.037 Sum_probs=24.7
Q ss_pred HHHHHHccCChHHHHHHHHHHhhhccCCChh---HHHHHHHHHHhcCChhHHHHHHhc
Q 009782 97 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKG---ISSKLLRLYATFGLIDEAHQVFDQ 151 (526)
Q Consensus 97 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~ 151 (526)
.+...++.|+.+....+++ .|..++.. .-.+.+...+..|+.+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 4444556677665554443 33322211 112334445566776666655554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.24 E-value=14 Score=40.15 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=35.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhcc
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQM 152 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 152 (526)
...++..+...+..+.+.++.... +.++...-.+..++..+|++++|.+.|++.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334566666777777776655433 233333334566778899999999999876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=2 Score=40.01 Aligned_cols=69 Identities=9% Similarity=0.091 Sum_probs=54.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH-------HhhcCCCCCHHHH
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMI-------VEKMEFEASPVVW 462 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~~p~~~~~ 462 (526)
....++.++...|+++++...+..+... .+-+...|..+|.+|.+.|+..+|++.| .+.+|..|.+.+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3456677788899999999999888764 3447788999999999999999999888 2345888887543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.97 E-value=1.8 Score=37.24 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 434 NLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
..+.+.|++++|++...+.++.+|. ...-..|+..+|-.|+++.|.+.++...+++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4566889999999999888888884 467777888899999999999999999999988433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.11 E-value=8.6 Score=41.68 Aligned_cols=122 Identities=10% Similarity=-0.037 Sum_probs=81.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhc-CCC-----------------
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKM-EFE----------------- 456 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----------------- 456 (526)
.++..+...+..+.+.++..- .+.+...--.+..+|...|++++|.+.|.++- +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 455566666776666554322 22344444566778888899999998885543 110
Q ss_pred ------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC-CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 457 ------ASPVVWGALLYACYLHGNVCMGETAAQKLFELEP-DNEH----NFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 457 ------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
.-...|..++..+.+.|.++.+.++.+.+++..+ ++.. .|..+.+.+...|+|++|-..+-.+.+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 0113467777888889999999999988887543 3321 5777888899999999998777666544
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=84.27 E-value=7.7 Score=30.14 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=32.0
Q ss_pred HHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009782 478 GETAAQKLFE--LEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLEF 526 (526)
Q Consensus 478 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 526 (526)
+..+|+.+.. +....+..|...+..+...|++.+|.++++.-.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666654 344455557777777777777777777777776666554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.06 E-value=5.2 Score=30.10 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNL 435 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 435 (526)
+..+-++.+...++-|++......+++|.+.+|+..|.++|+-.+.+ ..+....|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 45556666667789999999999999999999999999999999875 44456667777653
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=82.10 E-value=18 Score=30.40 Aligned_cols=53 Identities=11% Similarity=-0.023 Sum_probs=27.0
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChh--HHHHHHHHHHhcCChhHHHHHHh
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKG--ISSKLLRLYATFGLIDEAHQVFD 150 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~ 150 (526)
+...++.|+.+....+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 334445667776666666655554443321 11123344455666665555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.94 E-value=27 Score=30.99 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=102.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHE----ALIYFEQMERDGVLPDHLTFVSLLSACAHLG 404 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 404 (526)
.|.++..-|.+.+++++|.+++..-. ..+..+++... |.-+++-..+.+++++......++..+....
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga--------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA--------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH--------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 45677788899999999999875311 12222455543 4445666667889999888888887775532
Q ss_pred CHH-HHHHHHHHHHH---hcCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCh
Q 009782 405 SVK-VGERLFSVMVE---KYGI--SPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLH---GNV 475 (526)
Q Consensus 405 ~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~ 475 (526)
.-+ .-.++++.+.+ ..|- ..++..+..+...|.+.|++.+|..-|. .+..-++..+..++.-+... |..
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i--~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM--LGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--hCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 111 11223333321 1122 2377888999999999999999998872 33222456666666666554 544
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 476 CMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLV 520 (526)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 520 (526)
.++--+ ....+--|.-.|+...|..+++...
T Consensus 185 ~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAEF--------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred chHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332111 1222334556778888888777654
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=80.72 E-value=11 Score=29.64 Aligned_cols=29 Identities=7% Similarity=-0.092 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFEL 488 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 488 (526)
..|......+...|++.+|.++|+..++.
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444445555555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.13 E-value=41 Score=31.81 Aligned_cols=182 Identities=12% Similarity=0.092 Sum_probs=118.6
Q ss_pred CChHHHHHHHHHHhh-----hccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC-CcccHHHHH----HHHHhcCC
Q 009782 105 KAVEHGIKLHRLIPT-----NLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA-FAFPWNSLI----SGYAELGE 174 (526)
Q Consensus 105 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li----~~~~~~~~ 174 (526)
++++.|.+.+-.+.+ ........+...++..|...|+++...+.+..+..... ...+-..++ ........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 577777776655543 23345567788899999999999999888776654422 112233333 33333444
Q ss_pred hHH--HHHHHHHHHHcCCCCCc--------chHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHH
Q 009782 175 YED--AIALYFQMEEEGVEPDQ--------FTFPRVLKACAGLGLIRVGEKVHLDAVRF--GFGFD---GFVLNALVDMY 239 (526)
Q Consensus 175 ~~~--a~~~~~~m~~~~~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~ 239 (526)
.+. -..+.+... .+.... .....|...+...|++.+|.+++..+... |.... ...+...+..|
T Consensus 110 ~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332 222222221 111111 12356778889999999999999998653 22221 34677788999
Q ss_pred HhcCCHHHHHHHHhhcCC-----C-C----cccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 009782 240 AKCGDIVKARTVFDRIGN-----K-D----LISYNSMLTGYIHHGLLVEAFDIFRGMIL 288 (526)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (526)
...+++.+|..++.++.. + + ...+...+..+...+++.+|-+.|.+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999998887642 1 1 13456677788889999999998888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 526 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 132 LLRLYATFGLIDEAHQVFDQM-SNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGV 190
L + + D A + + S A +L Y E G + AI Y + E
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267
Query: 191 EPDQFTFPRVLKACAGLGLIRVGEKVHLDAVR------FGFGFDGFVLNALVDMYAKCGD 244
P A L + +A LN L ++ + G+
Sbjct: 268 -------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Query: 245 IVKARTVFDR---IGNKDLISYNSMLTGYIHHGLLVEAFDIFR 284
I +A ++ + + + +++++ + G L EA ++
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.002
Identities = 38/386 (9%), Positives = 87/386 (22%), Gaps = 29/386 (7%)
Query: 140 GLIDEAHQVFDQ-MSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFP 198
G + A + Q L S + + + + ++ + P
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS----TLAIKQN----P 64
Query: 199 RVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK 258
+ +A + LG + +A+ + + +V A + +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 259 DLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWV 318
+ + L + R + A A
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 319 LRRGVEW----------DLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNS----- 363
+ + L +L V + D+A +
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 364 IIHAHSKDH-EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGI 422
++ A+ + + + P L A A V E
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNL-ANALKEKGSVAEAEDCYNTALRLC 301
Query: 423 SPRVEHYACMVNLYGRAGLIDEAYSMIVEKME-FEASPVVWGALLYACYLHGNVCMGETA 481
+ + N+ G I+EA + + +E F L G +
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 482 AQKLFELEPDNEHNFELLIKIYGNAG 507
++ + P + +
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 526 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.83 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.77 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.76 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.5 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.17 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.08 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.91 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.71 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.49 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.38 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.34 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.5 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.27 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.43 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.1 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.55 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-22 Score=189.56 Aligned_cols=372 Identities=13% Similarity=0.106 Sum_probs=246.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHH
Q 009782 68 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQ 147 (526)
Q Consensus 68 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 147 (526)
+.|++++|++.++++.+..+. ++..+..+...+.+.|++++|.+.++...+.. +.+..++..+..++.+.|++++|+.
T Consensus 11 ~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 11 QAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccc
Confidence 456666666666666655422 45556666666666666666666666666553 3445566666666666666666666
Q ss_pred HHhccccCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 009782 148 VFDQMSNRTAFA-FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG 226 (526)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 226 (526)
.+.......+.. ..+..........+....+........... .................+....+...+....... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-c
Confidence 666665544322 223333334444444444444444444332 2233333444444455555555555555555443 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 009782 227 FDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303 (526)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 303 (526)
.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|...+++....+
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------- 233 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS------------- 233 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-------------
T ss_pred chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-------------
Confidence 3444555556666666666666666654432 233455556666666666666666665554432
Q ss_pred HhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHH
Q 009782 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383 (526)
Q Consensus 304 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~ 383 (526)
+.+...+..+...+.+.|++++|...|++ ..+
T Consensus 234 --------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------------------------al~ 265 (388)
T d1w3ba_ 234 --------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRR----------------------------AIE 265 (388)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------------HHH
T ss_pred --------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHH----------------------------HHH
Confidence 11233344566667777777766666653 333
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HH
Q 009782 384 DGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VV 461 (526)
Q Consensus 384 ~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~ 461 (526)
+.| +..++..+...+...|++++|.+.++..... .+.+...+..+...+...|++++|++.|.+.+...|+. .+
T Consensus 266 --~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T d1w3ba_ 266 --LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp --TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344 3568888999999999999999999999874 55678888999999999999999999999999999964 78
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 462 WGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 462 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
+..+...+.+.|++++|+..++++++++|+++.+|..++.+|.+.||
T Consensus 342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9e-21 Score=179.20 Aligned_cols=359 Identities=14% Similarity=0.091 Sum_probs=268.0
Q ss_pred HHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChH
Q 009782 98 LETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYE 176 (526)
Q Consensus 98 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 176 (526)
...+.+.|++++|.+.++.+.+.. +.+...+..+..++.+.|++++|+..|++....+|+ +.+|..+...+.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 445667889999999998888764 556778888888888899999999999888776664 367888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009782 177 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIG 256 (526)
Q Consensus 177 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 256 (526)
+|+..+....+.. +.+..............+....+........... .................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 9998888887753 2333344444444455555555555555554443 3334444445555666677777666665543
Q ss_pred C---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCchhHHhHH
Q 009782 257 N---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRRGVEWDLCIANSL 333 (526)
Q Consensus 257 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 333 (526)
. .+...+..+...+...|++++|...+++..+. .|+ +...+..+
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-------------------------------~~~~~~~l 209 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN-------------------------------FLDAYINL 209 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--Ccc-------------------------------cHHHHHHH
Confidence 2 23456666677777777777777777766553 121 33445666
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009782 334 IVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLF 413 (526)
Q Consensus 334 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 413 (526)
...+...|++++|...++. .... ...+...+..+...+.+.|++++|...+
T Consensus 210 ~~~~~~~~~~~~A~~~~~~----------------------------~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 260 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLR----------------------------ALSL-SPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHH----------------------------HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhccccHHHHHHHHHH----------------------------hHHH-hhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777777766653 3332 1235567778888999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 414 SVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
+++.+. .+-+...+..+...+...|++++|.+.+...+...|+ ...+..+...+...|++++|+..+++++++.|++
T Consensus 261 ~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 338 (388)
T d1w3ba_ 261 RRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999863 3336788999999999999999999999777777774 4788889999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.++..++.+|.+.|++++|.+.|++..+..
T Consensus 339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999988654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.4e-14 Score=131.05 Aligned_cols=129 Identities=10% Similarity=-0.052 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 009782 373 EALIYFEQMERDG-VLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVE 451 (526)
Q Consensus 373 ~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (526)
++...+.+..+.. -.++...+..+...+...|++++|...+++.... .+-+...|..+...|...|++++|.+.|.+
T Consensus 154 ~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHH
Confidence 3444444444321 2335667777788888888888888888888764 233577788888888888888888888877
Q ss_pred hcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 452 KMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 452 ~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
.+...|+ ..++..++.+|.+.|++++|+..|++++++.|++...+..+...+
T Consensus 232 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 232 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH
Confidence 7877775 477888888888888888888888888888888776555444433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.4e-13 Score=125.86 Aligned_cols=243 Identities=14% Similarity=0.033 Sum_probs=134.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 009782 165 LISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD 244 (526)
Q Consensus 165 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 244 (526)
....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+.+..+.. +-+...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 3444555666666666666655532 1223455555555666666666666666555543 2334455555556666666
Q ss_pred HHHHHHHHhhcCCCCcc--c-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 009782 245 IVKARTVFDRIGNKDLI--S-YNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILANASLLRIGAQVHGWVLRR 321 (526)
Q Consensus 245 ~~~A~~~~~~~~~~~~~--~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~a~~~~~~~~~~ 321 (526)
+++|.+.++.....+.. . +....... ............ ..+...+...++...+......
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGA-GGAGLGPSKRIL----------------GSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC----------------CTT----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhh-hhcccccchhhH----------------HHHHHhhHHHHHHHHHHHHHHH
Confidence 66666655544321110 0 00000000 000000000000 0000113333444444444433
Q ss_pred CC-CCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 009782 322 GV-EWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLP-DHLTFVSLLSA 399 (526)
Q Consensus 322 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~ 399 (526)
.. ..+..++..+...+...|++++|...|++ ... ..| +...|..+...
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------------------------al~--~~p~~~~~~~~lg~~ 215 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA----------------------------ALS--VRPNDYLLWNKLGAT 215 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------------HHH--HCTTCHHHHHHHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccc----------------------------ccc--cccccccchhhhhhc
Confidence 22 23455666677777777877777766653 222 233 45688888889
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
+...|++++|.+.++++.+. .| +...|..++.+|.+.|++++|++.|.+++...|+.
T Consensus 216 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 216 LANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred ccccccchhHHHHHHHHHHH---hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 99999999999999998864 34 57788889999999999999999998887766643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.3e-09 Score=100.10 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=80.8
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 009782 330 ANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVG 409 (526)
Q Consensus 330 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 409 (526)
+..+...+...|+++.+...++...+. ....+.......+......+...++...+
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 191 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEV------------------------LSSYQPQQQLQCLAMLIQCSLARGDLDNA 191 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------TTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHH------------------------hhhhhhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 345566777788888877776643310 00011111222333444444555555555
Q ss_pred HHHHHHHHHhcCCCC-----chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcCChHHHH
Q 009782 410 ERLFSVMVEKYGISP-----RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-----VVWGALLYACYLHGNVCMGE 479 (526)
Q Consensus 410 ~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~ 479 (526)
...+........-.. ....+..+...+...|++++|...+.+.+...|.. ..+..+...+...|++++|.
T Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 271 (366)
T d1hz4a_ 192 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 271 (366)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555544433211111 11223344445555566666666654444333211 23344455555666666666
Q ss_pred HHHHHHHc------cCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 009782 480 TAAQKLFE------LEPDNEHNFELLIKIYGNAGRLDDVERVERML 519 (526)
Q Consensus 480 ~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 519 (526)
..+++++. ..|....++..++.+|.+.|++++|.+.+++.
T Consensus 272 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66655543 12333344555666666666666666655554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=3.4e-09 Score=97.26 Aligned_cols=295 Identities=11% Similarity=-0.033 Sum_probs=169.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCc------chHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHH
Q 009782 166 ISGYAELGEYEDAIALYFQMEEEGVEPDQ------FTFPRVLKACAGLGLIRVGEKVHLDAVRFGFG-----FDGFVLNA 234 (526)
Q Consensus 166 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~~~~~ 234 (526)
...+...|++++|++++++..+. .|+. ..+..+...+...|++++|...+++..+.... .....+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34445556666666666655543 1221 23444455555666666666666655442110 11223444
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-------CC----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 009782 235 LVDMYAKCGDIVKARTVFDRIGN-------KD----LISYNSMLTGYIHHGLLVEAFDIFRGMILNGFDPDPVAISSILA 303 (526)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 303 (526)
+...+...|++..+...+..... +. ...+..+...+...|+++.+...+............
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 168 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-------- 168 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh--------
Confidence 55566666776666666554321 11 123445566677778888887777766654211111
Q ss_pred HhhhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHH
Q 009782 304 NASLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMER 383 (526)
Q Consensus 304 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~ 383 (526)
......+......+...|+...+...+.+.. .++. .
T Consensus 169 --------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~---------------------~~~~---~ 204 (366)
T d1hz4a_ 169 --------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLE---------------------NLLG---N 204 (366)
T ss_dssp --------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------------HHHT---T
T ss_pred --------------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------------------HHHH---H
Confidence 1112233444556666677776666554321 1110 1
Q ss_pred CCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCChHHHHHHHHhhc------
Q 009782 384 DGVLP--DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISP--RVEHYACMVNLYGRAGLIDEAYSMIVEKM------ 453 (526)
Q Consensus 384 ~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 453 (526)
.+..+ ....+..+...+...|+.+.|...++...+...-.+ ....+..+..++...|++++|...+.+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (366)
T d1hz4a_ 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 284 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence 11111 122455566677788999999998887754311111 23445667888999999999999885554
Q ss_pred CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---------CcchHHHHHHHHHhcCChHHHHH
Q 009782 454 EFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD---------NEHNFELLIKIYGNAGRLDDVER 514 (526)
Q Consensus 454 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~ 514 (526)
+..|+. ..+..+...|...|++++|.+.+++++++.+. ....+..++..+...|+.+++.+
T Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 285 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 444543 67788888899999999999999998875432 12234556667777888877754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=6.4e-10 Score=100.15 Aligned_cols=208 Identities=7% Similarity=0.048 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHhccCCC--C-ChhHHHHHH---HhcCCchHHHHHH
Q 009782 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDG-KLDQACWLFDHMPQ--K-DVVSWNSII---HAHSKDHEALIYF 378 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~-~~~~~~~li---~~~~~~~~a~~~~ 378 (526)
+..++|..+++.+++... -+...|+....++...| ++++|+..++...+ | +..+|..+- ...|+.++|++.+
T Consensus 57 e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~ 135 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 135 (315)
T ss_dssp CCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHH
Confidence 455666666666665532 23445555555555544 35666666655443 2 222332221 1245555566666
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC------hHHHHHHHHh
Q 009782 379 EQMERDGVLP-DHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL------IDEAYSMIVE 451 (526)
Q Consensus 379 ~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~ 451 (526)
+++.+ ..| +...|..+...+...|++++|.+.++.+.+. -+-+...|+.+...+.+.+. +++|++.+.+
T Consensus 136 ~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 136 ADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred hhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHH
Confidence 65555 233 2445555555555556666666666655543 11244445544444444333 3455555555
Q ss_pred hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--cchHHHHHHHHHhc--CChHHHHHHHHHH
Q 009782 452 KMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDN--EHNFELLIKIYGNA--GRLDDVERVERML 519 (526)
Q Consensus 452 ~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~A~~~~~~m 519 (526)
++...|+. ..|..+...+. ....+++.+.++.+.++.|+. ...+..++.+|... +..+.+...+++.
T Consensus 212 al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 212 MIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555532 44444433332 233455555555555554432 23334444444332 4444454444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=9.4e-10 Score=100.32 Aligned_cols=102 Identities=9% Similarity=-0.147 Sum_probs=80.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGET 480 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 480 (526)
..+..+++...+..... ..+++...+..++..+...|+.++|...+.+.+...|+. .++..++..+...|++++|.+
T Consensus 220 ~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 220 FTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp HHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred HhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 33444556666666654 334456666677778888899999999998888888855 788888889999999999999
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHh
Q 009782 481 AAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
.++++++++|.+...|..|...+..
T Consensus 298 ~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 298 YFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHhH
Confidence 9999999999888878888777764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=3.6e-09 Score=92.42 Aligned_cols=38 Identities=8% Similarity=-0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
.+|..+...+...|++++|...|++++..+|++...|.
T Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 210 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 45566777778888888888888888888887654443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=2.9e-08 Score=88.97 Aligned_cols=218 Identities=9% Similarity=0.013 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc--------------cCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 69 LQALDSIIQDLESSVQNGITVQTETFASLLETCYQ--------------LKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 69 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
....+++..+++.+...-+ .++..+...+.-+-+ .+..++|..+|+...+...+.+...|...+.
T Consensus 29 ~~~~~Rv~~vyerAl~~~~-~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~ 107 (308)
T d2onda1 29 TLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455677777877776532 245555444433222 2345778888888887655666778888888
Q ss_pred HHHhcCChhHHHHHHhccccCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-HhccCChH
Q 009782 135 LYATFGLIDEAHQVFDQMSNRTAFA--FPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA-CAGLGLIR 211 (526)
Q Consensus 135 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~ 211 (526)
...+.|+++.|..+|+++....|.. ..|...+....+.|+++.|.++|+...+.+ +.+...|...... +...|+.+
T Consensus 108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHH
Confidence 8889999999999999887765532 368888888999999999999999988754 2333444433332 34568899
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CcccHHHHHHHHHhCCChHHHHHHHH
Q 009782 212 VGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGNK-------DLISYNSMLTGYIHHGLLVEAFDIFR 284 (526)
Q Consensus 212 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (526)
.|..+|+.+.+.. +.+...+...++.+.+.|+++.|..+|++.... ....|...+..-...|+.+.+.++++
T Consensus 187 ~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988763 556778888899999999999999999876431 12367777887788899999988888
Q ss_pred HHHHc
Q 009782 285 GMILN 289 (526)
Q Consensus 285 ~m~~~ 289 (526)
++.+.
T Consensus 266 r~~~~ 270 (308)
T d2onda1 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=2.5e-09 Score=89.43 Aligned_cols=122 Identities=9% Similarity=-0.053 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHH
Q 009782 388 PDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALL 466 (526)
Q Consensus 388 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 466 (526)
|+...+......+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..|.+++...|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66677777777888888888888888887764 2346777788888888888888888888888888885 47777788
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH
Q 009782 467 YACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD 511 (526)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (526)
.+|...|++++|+..+++++++.|++...+...+..+...++...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 124 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhH
Confidence 888888888888888888888777655555555555444443333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.3e-07 Score=84.64 Aligned_cols=192 Identities=7% Similarity=-0.047 Sum_probs=136.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC-ChhHHHHHHhccccCCCCc-ccHHHHHHHHHh
Q 009782 94 FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG-LIDEAHQVFDQMSNRTAFA-FPWNSLISGYAE 171 (526)
Q Consensus 94 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~ 171 (526)
|+.+-..+.+.+..++|+++++.+++.. |-+...|+....++...| ++++|+..++.....+|+. .+|+.+...+.+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 3344444556677888888888888875 566778888888877766 4788888888887776643 678888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC------H
Q 009782 172 LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGD------I 245 (526)
Q Consensus 172 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~ 245 (526)
.|++++|++.++.+.+.. +-+...|..+...+...|++++|.+.++.+++.. +.+...|+.+...+.+.+. +
T Consensus 125 l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhh
Confidence 888888888888888753 3346678888888888888888888888888875 4456677766666665554 5
Q ss_pred HHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 246 VKARTVFDRIGN---KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 246 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
++|.+.+....+ .+...|+.+...+. ....+++.+.++...+.
T Consensus 203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 203 EREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence 677777665543 34556666555443 34456777777766554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=6e-09 Score=78.17 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=67.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC
Q 009782 396 LLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN 474 (526)
Q Consensus 396 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 474 (526)
-...+...|++++|...|+++.+. -+.+...|..+..+|...|++++|+..+.+.+...|+ +..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 344556667777777777776653 2335566666666777777777777777666666663 3666666666777777
Q ss_pred hHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 475 VCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
+++|+..+++++++.|+++.++..+.++
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777766655555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2e-07 Score=80.94 Aligned_cols=221 Identities=12% Similarity=-0.010 Sum_probs=150.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcC
Q 009782 64 FPKTKLQALDSIIQDLESSVQNGITV---QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFG 140 (526)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 140 (526)
.+.....+.+.++.-+++........ ...+|..+-..+.+.|++++|.+.|+..++.. +.++.+|..+..++.+.|
T Consensus 7 ~~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g 85 (259)
T d1xnfa_ 7 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 85 (259)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred hcccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHH
Confidence 44455567778888888887653322 23466666778889999999999999999875 667889999999999999
Q ss_pred ChhHHHHHHhccccCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 009782 141 LIDEAHQVFDQMSNRTAF-AFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLD 219 (526)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 219 (526)
++++|++.|++....+|+ +.+|..+..++...|++++|.+.|+...+.. +.+......+...+...+..+.+..+...
T Consensus 86 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 86 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999877664 3678889999999999999999999998753 22333333333444455555555555554
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 009782 220 AVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN-------KDLISYNSMLTGYIHHGLLVEAFDIFRGMILN 289 (526)
Q Consensus 220 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (526)
.... .++...++ ++..+.................. ....+|..+...|...|++++|.+.|++....
T Consensus 165 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 165 FEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhcc--chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4443 22222222 23333222222222222211111 12346777889999999999999999998875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=9.8e-08 Score=85.40 Aligned_cols=186 Identities=8% Similarity=0.073 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--C-C-hhHHHHHHHh---cCCchHHHHHH
Q 009782 306 SLLRIGAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQ--K-D-VVSWNSIIHA---HSKDHEALIYF 378 (526)
Q Consensus 306 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~---~~~~~~a~~~~ 378 (526)
+..+.+..++++.++...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+.. .+..+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34455556666655544444556667777777777888888777776543 2 1 1233333333 35556666666
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC
Q 009782 379 EQMERDGVLPDHLTFVSLLS-ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA 457 (526)
Q Consensus 379 ~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 457 (526)
+...+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+++.|..+|.+++...|
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 666654322 2223322222 233456777788888777764 344566777777777777888888777766654333
Q ss_pred ---C--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc
Q 009782 458 ---S--PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH 494 (526)
Q Consensus 458 ---~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (526)
+ ...|...+..-...|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 2 146677777667778888887777777777776544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.5e-08 Score=74.69 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=86.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 009782 431 CMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRL 509 (526)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (526)
.-...+.+.|++++|+..|.+.+...|+ ...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3467788999999999999999998995 488999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 009782 510 DDVERVERMLVDRGL 524 (526)
Q Consensus 510 ~~A~~~~~~m~~~g~ 524 (526)
++|...+++..+...
T Consensus 88 ~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999886543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=8.8e-09 Score=93.69 Aligned_cols=155 Identities=8% Similarity=-0.143 Sum_probs=113.1
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 009782 333 LIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERL 412 (526)
Q Consensus 333 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 412 (526)
....+...|.+++|+..++.+.+.+ +-+...|..+...+...|++++|...
T Consensus 150 ~~~~~~~~~~~~~Al~~~~~~i~~~-----------------------------p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 150 RFVAAQAAVAPAEELAFTDSLITRN-----------------------------FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTT-----------------------------CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHhccccHHHHHHHHHHHHcC-----------------------------CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3456666788888888877766422 11445677777777777777766655
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 413 FSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
++...+. .|+. ..+...+...+..+++...+...+...|+. ..+..++..+...|+.++|...+.+..+.+|.
T Consensus 201 ~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 5444332 1111 123344556677778888886776666644 66677777888899999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 492 NEHNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
+..++..++.+|.+.|++++|.+.++++.+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.82 E-value=5.6e-09 Score=77.60 Aligned_cols=91 Identities=12% Similarity=-0.042 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 009782 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGR 508 (526)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (526)
..+...+.+.|++++|+..|.+.+...|+ ...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 35677888999999999999888988995 58999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 009782 509 LDDVERVERMLV 520 (526)
Q Consensus 509 ~~~A~~~~~~m~ 520 (526)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998863
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=1.4e-08 Score=84.67 Aligned_cols=98 Identities=9% Similarity=-0.053 Sum_probs=85.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHH
Q 009782 424 PRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKI 502 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (526)
|+...+...+..|.+.|++++|+..|.+++...|+ +..|..++.+|.+.|++++|+..++++++++|++..+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 66777777888899999999999999888888885 47788888899999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 009782 503 YGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 503 ~~~~g~~~~A~~~~~~m~~ 521 (526)
|.+.|++++|...|+++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999998887754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=6.1e-08 Score=79.73 Aligned_cols=119 Identities=11% Similarity=0.027 Sum_probs=76.2
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHH
Q 009782 399 ACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCM 477 (526)
Q Consensus 399 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 477 (526)
.+...|+++.|.+.|.++ .+|+..+|..+..+|...|++++|++.|.+++..+|+. ..|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 345567777777666543 24556666667777777777777777776677666643 666666777777777777
Q ss_pred HHHHHHHHHccCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009782 478 GETAAQKLFELEPDNE----------------HNFELLIKIYGNAGRLDDVERVERMLVDR 522 (526)
Q Consensus 478 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 522 (526)
|+..|++++...|.+. .++..++.+|.+.|++++|.+.+.+....
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777777665443322 23455666777777777777776666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=9.7e-08 Score=84.58 Aligned_cols=167 Identities=10% Similarity=-0.022 Sum_probs=84.4
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHH
Q 009782 329 IANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLTFVSLLSACA-HLGSVK 407 (526)
Q Consensus 329 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~ 407 (526)
+|..+..+|.+.|++++|.+.+++.. +++.... .......++..+...|. ..|+++
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~---------------------~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 135 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAI---------------------QIFTHRG--QFRRGANFKFELGEILENDLHDYA 135 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhh---------------------HHhhhcc--cchhHHHHHHHHHHhHhhHHHHHH
Confidence 45566777788888888877776422 2221110 00011223444444443 346777
Q ss_pred HHHHHHHHHHHhc---CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--------HHHHHHHHHHHhcCCh
Q 009782 408 VGERLFSVMVEKY---GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--------VVWGALLYACYLHGNV 475 (526)
Q Consensus 408 ~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~ 475 (526)
+|.+.++++.+.. +.++ ...++..+...|...|++++|.+.|.+.+...|.. ..+...+..+...|++
T Consensus 136 ~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 215 (290)
T d1qqea_ 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence 7777666654321 1111 13345566667777777777777775544333221 1223344455566777
Q ss_pred HHHHHHHHHHHccCCCCcc-----hHHHHHHHHHh--cCChHHHHHHHHH
Q 009782 476 CMGETAAQKLFELEPDNEH-----NFELLIKIYGN--AGRLDDVERVERM 518 (526)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~ 518 (526)
+.|.+.+++..++.|.... ....++.++.. .+++++|+..|++
T Consensus 216 ~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7777777777766654222 23444555544 2346666665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=5.1e-08 Score=77.64 Aligned_cols=120 Identities=8% Similarity=-0.017 Sum_probs=101.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhc
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLH 472 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 472 (526)
......|.+.|++++|...|+++.+. -+-+...|..+..+|...|++++|++.|.+.+...|+. ..|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 34456688999999999999999975 24478889999999999999999999999999989965 8999999999999
Q ss_pred CChHHHHHHHHHHHccCCCCcchHHHHHHHH--HhcCChHHHHHH
Q 009782 473 GNVCMGETAAQKLFELEPDNEHNFELLIKIY--GNAGRLDDVERV 515 (526)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 515 (526)
|++++|...+++++++.|.++.++..+..+. ...+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887776664 344556666544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2.7e-08 Score=79.35 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAG 507 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (526)
+......|.+.|++++|+..|.+.+...|+. ..|..+...|...|++++|++.|+++++++|.+..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3445677889999999999999999999955 888999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 009782 508 RLDDVERVERMLVDRG 523 (526)
Q Consensus 508 ~~~~A~~~~~~m~~~g 523 (526)
++++|.+.+++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999987654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=5e-08 Score=73.14 Aligned_cols=108 Identities=15% Similarity=-0.003 Sum_probs=89.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC---hHHHHHHHHhhcCCCCCH---HHHHHHHH
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGL---IDEAYSMIVEKMEFEASP---VVWGALLY 467 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~---~~~~~l~~ 467 (526)
..++..+...+++++|++.|+..... -+.+..++..+..++.+.++ +++|++++.+.+...|++ .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 46778888999999999999999874 34477888899999987655 456999998888877755 36788999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 009782 468 ACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIY 503 (526)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (526)
+|.+.|++++|++.|+++++++|++..+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999988766655444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.4e-07 Score=74.40 Aligned_cols=121 Identities=11% Similarity=-0.016 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA- 457 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p- 457 (526)
.+......+.+.|++++|...|.++.+.....+. ..+|..+..+|.+.|++++|+..+.+.+...|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 3444556778888999999988888764322221 24567788899999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 458 SPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 458 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
++..+..++.++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5588999999999999999999999999999999999999988888777666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4.3e-07 Score=74.50 Aligned_cols=87 Identities=8% Similarity=-0.050 Sum_probs=79.3
Q ss_pred HHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 433 VNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
...+...|+++.|++.| +.+. .|++.+|..++..+...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~-~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAF-SAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHH-HTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 55677899999999999 4443 567788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 009782 513 ERVERMLVD 521 (526)
Q Consensus 513 ~~~~~~m~~ 521 (526)
.+.|++...
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=1.3e-06 Score=77.15 Aligned_cols=168 Identities=12% Similarity=-0.040 Sum_probs=119.0
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 009782 332 SLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPD-HLTFVSLLSACAHLGSVKVGE 410 (526)
Q Consensus 332 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~ 410 (526)
.....|...|++++|.+.|.++ .++... .+-.++ ..+|..+..+|.+.|++++|.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA---------------------~~~~~~---~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKA---------------------ADYQKK---AGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHH---------------------HHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHH---------------------HHHHHH---cCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3456677777777777776632 222221 122222 347888899999999999999
Q ss_pred HHHHHHHHhcCCCCc----hhHHHHHHHHHHh-cCChHHHHHHHHhhcCC------CCC-HHHHHHHHHHHHhcCChHHH
Q 009782 411 RLFSVMVEKYGISPR----VEHYACMVNLYGR-AGLIDEAYSMIVEKMEF------EAS-PVVWGALLYACYLHGNVCMG 478 (526)
Q Consensus 411 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~------~p~-~~~~~~l~~~~~~~g~~~~a 478 (526)
+.++...+.+.-..+ ...+..+...|.. .|++++|++.+.+++.. .+. ..++..+...+...|++++|
T Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A 177 (290)
T d1qqea_ 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence 999987654211112 4556667777744 69999999999666532 121 26678889999999999999
Q ss_pred HHHHHHHHccCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 479 ETAAQKLFELEPDNEH-------NFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 479 ~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+..++++....|.+.. .+...+..+...|+++.|.+.+++..+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999998776543 24566777888999999999999876553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.50 E-value=1.2e-06 Score=70.13 Aligned_cols=129 Identities=9% Similarity=-0.000 Sum_probs=102.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc-------------hhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC
Q 009782 392 TFVSLLSACAHLGSVKVGERLFSVMVEKYGISPR-------------VEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS 458 (526)
Q Consensus 392 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 458 (526)
.+......+.+.|++++|...|+++.......+. ...|..+..+|.+.|++++|+..+.+.+...|+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~ 96 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 96 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence 4455566778889999999888887653222221 234566788899999999999999999988885
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHH
Q 009782 459 -PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDD-VERVERMLV 520 (526)
Q Consensus 459 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~ 520 (526)
...|..+..++...|++++|+..|+++++++|++..+...+..+....+...+ ..+++..|.
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999988888877776654 455555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=4.6e-07 Score=72.66 Aligned_cols=97 Identities=9% Similarity=-0.031 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS----------------PVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
..+...+..+.+.|++++|+..|.+++...|. ..+|..+..+|.+.|++++|+..++++++++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34455677889999999999999777643221 14566778889999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.++.++..++.+|...|++++|...|+++.+..
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.4e-07 Score=70.70 Aligned_cols=95 Identities=7% Similarity=-0.084 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCc--chHHHHHHHH
Q 009782 430 ACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGN---VCMGETAAQKLFELEPDNE--HNFELLIKIY 503 (526)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~ 503 (526)
..++..+...+++++|.+.|.+.+...|+ +.++..+..++.++++ +++|+.+++++++.+|.+. .++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788889999999999999999998885 4888889999887554 5579999999999887653 4789999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 009782 504 GNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 504 ~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.+.|++++|.+.|+++.+...
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 999999999999999987543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=2.6e-07 Score=70.16 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcc-------hHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEH-------NFELLI 500 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 500 (526)
+..+...|.+.|++++|++.|.+.+...|+ ...+..+..+|.+.|++++|++.+++++++.|.+.. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888888888888888888887875 477788888888888888888888888888776654 455566
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 009782 501 KIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~m~~ 521 (526)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677778888888888877653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.46 E-value=8.1e-07 Score=71.22 Aligned_cols=118 Identities=9% Similarity=0.009 Sum_probs=91.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhc-------------CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKY-------------GISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP- 459 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~- 459 (526)
.....+...|++++|.+.|.++.+.. .+.| ....|..+..+|.+.|++++|+..+.+.+...|+.
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 111 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 111 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
Confidence 34444566677777777776654310 1122 45567778889999999999999999999999954
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHH
Q 009782 460 VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDV 512 (526)
Q Consensus 460 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 512 (526)
..|..++.++...|++++|++.|+++++++|++..+...+..++.+.....++
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999888888887666555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.40 E-value=1.2e-06 Score=68.67 Aligned_cols=112 Identities=8% Similarity=-0.024 Sum_probs=83.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--------------chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-
Q 009782 394 VSLLSACAHLGSVKVGERLFSVMVEKYGISP--------------RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS- 458 (526)
Q Consensus 394 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 458 (526)
..-...+.+.|++.+|...|.++.......+ ...+|..+..+|.+.|++++|++.+.+++...|+
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~ 100 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh
Confidence 3344556777888888888887775321111 1235667788888889999999988888888884
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 009782 459 PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN 505 (526)
Q Consensus 459 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (526)
..+|..++.++...|++++|+..|+++++++|++..+...+..+..+
T Consensus 101 ~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 48888888889999999999999999999999888877666655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.40 E-value=1.6e-06 Score=69.67 Aligned_cols=118 Identities=16% Similarity=0.043 Sum_probs=81.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcC
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEA-SPVVWGALLYACYLHG 473 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 473 (526)
.........|++++|.+.|....+. .+....- .+ ..+.+-.... . ...+ ....+..+...+...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~-----~~-~~~~w~~~~r---~--~l~~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE---WRGPVLD-----DL-RDFQFVEPFA---T--ALVEDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG-----GG-TTSTTHHHHH---H--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc-----cC-cchHHHHHHH---H--HHHHHHHHHHHHHHHHHHHCC
Confidence 3344566778888888888887753 2221100 00 0011111100 0 0111 1256777888999999
Q ss_pred ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCC
Q 009782 474 NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD-----RGLEF 526 (526)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~ 526 (526)
++++|+..++++++.+|.+..+|..++.+|.+.|++++|.+.|+++.+ -|+.|
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999854 46654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.38 E-value=1.4e-06 Score=68.42 Aligned_cols=96 Identities=14% Similarity=-0.002 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhcCCCC------C-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 428 HYACMVNLYGRAGLIDEAYSMIVEKMEFEA------S-----------PVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
.+..-+..+.+.|++.+|+..|.+++..-| + ..++..+..+|.+.|++++|+..++++++++|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 344556778899999999999977663222 1 13566788889999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+..+|..++.+|...|++++|...|++..+..
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=2.5e-06 Score=68.28 Aligned_cols=94 Identities=6% Similarity=-0.040 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhcC----------------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 009782 430 ACMVNLYGRAGLIDEAYSMIVEKME----------------FEAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDN 492 (526)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (526)
......+.+.|++++|++.|.+++. ..|. ...+..+..++.+.|++++|+..++++++++|++
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 110 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 110 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence 3456667788999999888866552 2332 2567778889999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 493 EHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
+.+|..++.+|.+.|++++|.+.|++..+..
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999987643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=3.4e-06 Score=61.98 Aligned_cols=90 Identities=11% Similarity=-0.000 Sum_probs=78.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcC
Q 009782 395 SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEAS-PVVWGALLYACYLHG 473 (526)
Q Consensus 395 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 473 (526)
.+...+.+.|++++|...|+++.+. -+-+...|..+..++.+.|++++|+..+.+.+...|+ ...+..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 4456678899999999999999875 2336889999999999999999999999999999996 588999999999999
Q ss_pred ChHHHHHHHHHHH
Q 009782 474 NVCMGETAAQKLF 486 (526)
Q Consensus 474 ~~~~a~~~~~~~~ 486 (526)
+.++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999864
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0018 Score=56.74 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 009782 124 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKA 203 (526)
Q Consensus 124 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 203 (526)
+|..-...+...|.+.|.++.|..++..+ .-|.-++..+.+.++++.|.+++... -+..+|..+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~-------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 78 (336)
T ss_dssp C----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC-------CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHH
Confidence 34444445556666677777777777655 34566666677777777766665543 134466666666
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcccHHHHHHHHHhCC
Q 009782 204 CAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKARTVFDRIGN---KDLISYNSMLTGYIHHG 274 (526)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 274 (526)
|.+......+ .+...+...+......++..|-..|.+++...+++.... .+...++.++..|++.+
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 6655544332 111222233444455677777777777777777775432 34455677777777653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.17 E-value=4.8e-06 Score=66.43 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhhcC---CCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 009782 427 EHYACMVNLYGRAGLIDEAYSMIVEKME---FEAS-------------PVVWGALLYACYLHGNVCMGETAAQKLFELEP 490 (526)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 490 (526)
..+...+..+.+.|++++|...|.+++. ..+. ..+|..+..+|.+.|++++|+..++++++++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 4455677889999999999999966662 1111 13456677788999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 491 DNEHNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.+..+|..++.+|...|++++|...|+++.+..
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.17 E-value=2.2e-06 Score=66.35 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=86.3
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc----------CChHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q 009782 400 CAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRA----------GLIDEAYSMIVEKMEFEASP-VVWGALLYA 468 (526)
Q Consensus 400 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~ 468 (526)
|.+.+.+++|...++...+. -+.+...+..+..+|... +.+++|+..|.+++.++|+. .+|..++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence 34456678888888888764 233677777777777643 45678888888888888854 788888888
Q ss_pred HHhcC-----------ChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 469 CYLHG-----------NVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 469 ~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
|...| +++.|.+.|+++++++|++...+..|... .+|.+++.+..+.|+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 87654 36889999999999999998766555555 466777777777765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.8e-06 Score=81.09 Aligned_cols=76 Identities=9% Similarity=-0.063 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 429 YACMVNLYGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
+..++..+...|++++|...|.+++...|+. ..|+.++..+...|+..+|+..|.+++...|+.+.++..|..+|.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3344444444555555555554444444433 444555555555555555555555555544444444444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.09 E-value=0.00033 Score=60.06 Aligned_cols=147 Identities=12% Similarity=-0.047 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHH
Q 009782 371 DHEALIYFEQMERDGVLPDHLTFV-SLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGR----AGLIDEA 445 (526)
Q Consensus 371 ~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 445 (526)
.++|...++.....|.......+. ..............+...+...... .+...+..|...|.. ..+...+
T Consensus 90 ~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~ 165 (265)
T d1ouva_ 90 TNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKA 165 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred hHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccc
Confidence 355666677666654322211111 1111112344566777777666542 355666677777764 4566677
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHH
Q 009782 446 YSMIVEKMEFEASPVVWGALLYACYL----HGNVCMGETAAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVER 517 (526)
Q Consensus 446 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 517 (526)
...+..... ..+......+...+.. ..+.+.|+..|+++.+.+ ++.++..|+.+|.+ ..++++|.+.|+
T Consensus 166 ~~~~~~a~~-~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~ 242 (265)
T d1ouva_ 166 LASYDKACD-LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFK 242 (265)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred hhhhhcccc-ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence 777744443 3456666666666655 568999999999988775 46678888988876 447889999999
Q ss_pred HHHhCCC
Q 009782 518 MLVDRGL 524 (526)
Q Consensus 518 ~m~~~g~ 524 (526)
+..+.|-
T Consensus 243 kAa~~g~ 249 (265)
T d1ouva_ 243 KGCKLGA 249 (265)
T ss_dssp HHHHHTC
T ss_pred HHHHCcC
Confidence 8887764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.08 E-value=4.4e-06 Score=65.68 Aligned_cols=94 Identities=16% Similarity=0.003 Sum_probs=64.7
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHhhcCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC-
Q 009782 428 HYACM--VNLYGRAGLIDEAYSMIVEKMEFEAS-------------PVVWGALLYACYLHGNVCMGETAAQKLFELEPD- 491 (526)
Q Consensus 428 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~- 491 (526)
.|..+ ...+.+.|++++|++.|.+.+.+.|+ ...|+.+..+|...|++++|...+++++++.|.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 44455667777777777666633221 246777788888888888888888888764321
Q ss_pred ----------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 492 ----------NEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 492 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
...++..++.+|...|++++|.+.|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122577789999999999999999888754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=5.5e-06 Score=58.65 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhhcCC-------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHH
Q 009782 426 VEHYACMVNLYGRAGLIDEAYSMIVEKMEF-------EAS-PVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFE 497 (526)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (526)
...+-.++..+.+.|++++|+..|.+++.. .++ ..++..+..++.+.|++++|+..++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344557788888999999999988777632 222 367889999999999999999999999999999998887
Q ss_pred HHHHH
Q 009782 498 LLIKI 502 (526)
Q Consensus 498 ~l~~~ 502 (526)
.+...
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=2.4e-06 Score=66.16 Aligned_cols=87 Identities=9% Similarity=-0.015 Sum_probs=72.7
Q ss_pred HHhcCChHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 009782 436 YGRAGLIDEAYSMIVEKMEFEASP-VVWGALLYACYLH----------GNVCMGETAAQKLFELEPDNEHNFELLIKIYG 504 (526)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (526)
|-+.+.+++|.+.|++++...|+. ..+..+..++... +.+++|+..++++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 456677999999999999999955 7788888777643 45688999999999999999999999999998
Q ss_pred hcCC-----------hHHHHHHHHHHHhC
Q 009782 505 NAGR-----------LDDVERVERMLVDR 522 (526)
Q Consensus 505 ~~g~-----------~~~A~~~~~~m~~~ 522 (526)
..|+ +++|.+.|++..+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 8764 68888888887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.7e-05 Score=58.60 Aligned_cols=97 Identities=6% Similarity=-0.033 Sum_probs=80.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH--------HHHHH
Q 009782 393 FVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP--------VVWGA 464 (526)
Q Consensus 393 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~ 464 (526)
+..+...+...|++++|...|.+..+. .+.+...+..+..+|.+.|++++|++.+.+++...|+. .+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 445677888999999999999999875 33468889999999999999999999998877655532 46677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 465 LLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 465 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
+...+...+++++|++.+++.+...|.
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 778888999999999999999887765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=0.006 Score=53.37 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCCCcccHHHHHHHH
Q 009782 90 QTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGY 169 (526)
Q Consensus 90 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 169 (526)
|..-...+.+.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. .+ .+|..+...+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~--~~~k~~~~~l 79 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--ST--RTWKEVCFAC 79 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CH--HHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CH--HHHHHHHHHH
Confidence 44444455566666777777777665432 23455566666667776666665442 12 5566666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 009782 170 AELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAKCGDIVKAR 249 (526)
Q Consensus 170 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 249 (526)
.+.....-| .+.......+......++..|-..|.++....+++..... -..+...++.++..|++.+ .++..
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHH
Confidence 666554332 1222223334444556666666777777766666655432 1445556666777666654 33444
Q ss_pred HHHhh
Q 009782 250 TVFDR 254 (526)
Q Consensus 250 ~~~~~ 254 (526)
+.++.
T Consensus 153 e~l~~ 157 (336)
T d1b89a_ 153 EHLEL 157 (336)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=1.6e-05 Score=75.60 Aligned_cols=118 Identities=7% Similarity=-0.062 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009782 403 LGSVKVGERLFSVMVEKYGISP-RVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYLHGNVCMGETA 481 (526)
Q Consensus 403 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 481 (526)
.+.++.+...++... ++.| +...+..+...+.+.|+.++|...+.+.+...| ..++..++..+...|++++|+..
T Consensus 99 ~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC----------------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 344555555444443 4444 566778888889999999999988755553333 25777889999999999999999
Q ss_pred HHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 482 AQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
|++++++.|++..+|+.|+.+|...|++.+|...|.+......
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~ 217 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999998876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.71 E-value=2.6e-05 Score=66.73 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCH
Q 009782 402 HLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASP 459 (526)
Q Consensus 402 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 459 (526)
+.|++++|...+++.++. -+-|...+..++..|+..|++++|.+.+...+...|+.
T Consensus 8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~ 63 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 63 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence 445555555555555542 22345555555555555555555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.60 E-value=0.00011 Score=57.43 Aligned_cols=100 Identities=12% Similarity=0.013 Sum_probs=76.6
Q ss_pred HHHHH--HHHHhccCCHHHHHHHHHHHHHhcCCCCc----------hhHHHHHHHHHHhcCChHHHHHHHHhhcC-----
Q 009782 392 TFVSL--LSACAHLGSVKVGERLFSVMVEKYGISPR----------VEHYACMVNLYGRAGLIDEAYSMIVEKME----- 454 (526)
Q Consensus 392 ~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 454 (526)
+|..+ ...+...|++++|.+.|++..+...-.|+ ...|+.+..+|...|++++|++.+.+.+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 45555 44566789999999999999875333332 35788899999999999999988866653
Q ss_pred --CCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 009782 455 --FEASP-----VVWGALLYACYLHGNVCMGETAAQKLFELEPD 491 (526)
Q Consensus 455 --~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (526)
..++. ..+..+..+|...|++++|+..|++++++.|.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 23322 35677889999999999999999999987554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.59 E-value=0.016 Score=49.05 Aligned_cols=190 Identities=14% Similarity=0.042 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHh----cCChhHHHHHHhccccCCCCcccHHHHH
Q 009782 91 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYAT----FGLIDEAHQVFDQMSNRTAFAFPWNSLI 166 (526)
Q Consensus 91 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li 166 (526)
+..+..+-..+.+.+++++|.+.|+...+.| +...+-.|...|.. ..+...|...++.....+. +.....+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cchhhccc
Confidence 4455555556666778888888888877665 44555556666654 4567777777776655432 13333333
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 009782 167 SGYAE----LGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA----GLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDM 238 (526)
Q Consensus 167 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 238 (526)
..+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence 33332 35667777777777665521 12222222222 2334455555555544432 44445555555
Q ss_pred HHh----cCCHHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 009782 239 YAK----CGDIVKARTVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 239 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 290 (526)
|.. ..+...+...++...+ .+..+...+...|.. ..+.++|...|.+..+.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred hccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 554 3445555555554433 244444444444444 345666666666655544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.00071 Score=53.72 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=69.5
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 009782 368 HSKDHEALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYS 447 (526)
Q Consensus 368 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 447 (526)
.|+.++|...|.+.... .+.... ......+.+...-..+... ....+..+...+.+.|++++|+.
T Consensus 24 ~g~~e~A~~~~~~AL~l--~rG~~l--------~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 24 AGRFEQASRHLSAALRE--WRGPVL--------DDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp TTCHHHHHHHHHHHHTT--CCSSTT--------GGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh--Cccccc--------ccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCchHHHH
Confidence 68999999999998873 222110 1111111111111222211 24566778888888899999988
Q ss_pred HHHhhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009782 448 MIVEKMEFEA-SPVVWGALLYACYLHGNVCMGETAAQKLF 486 (526)
Q Consensus 448 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 486 (526)
.+.+.+...| +...|..++.++...|+.++|++.|+++.
T Consensus 89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888888 45888888888888999888888888873
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00021 Score=50.09 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009782 461 VWGALLYACYLHGNVCMGETAAQKLFELEPDN-------EHNFELLIKIYGNAGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 461 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 524 (526)
.+-.++..+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+...
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 34468889999999999999999999865443 34688999999999999999999999887543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.38 E-value=0.01 Score=42.03 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009782 457 ASPVVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVDRGLE 525 (526)
Q Consensus 457 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 525 (526)
.+....+..+.....+|+-+.-.++++.+++.+..++...-.++.+|.+.|...++.+++.+.-++|++
T Consensus 84 ~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 84 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344556667788889999999999999988877777888999999999999999999999999999974
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.057 Score=49.62 Aligned_cols=266 Identities=12% Similarity=0.009 Sum_probs=155.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhhHHHH
Q 009782 234 ALVDMYAKCGDIVKARTVFDRIGNKDLISYNSMLTGYIHHGLLVEAFDIFRGMILNGF-DPDPVAISSILANASLLRIGA 312 (526)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~a~ 312 (526)
..+..+.+.+++......+..-+ .+...-.....+....|+.++|...+..+-..|. .|+. +.
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~---------------c~ 140 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA---------------CD 140 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH---------------HH
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH---------------HH
Confidence 34556677788877666554322 2334445667777888888888888777766543 3432 23
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH
Q 009782 313 QVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQACWLFDHMPQKDVVSWNSIIHAHSKDHEALIYFEQMERDGVLPDHLT 392 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~~~m~~~~~~p~~~~ 392 (526)
.++..+...|. .+...+-.-+......|++..|..+...+...........+....+...+...... ..++...
T Consensus 141 ~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~-----~~~~~~~ 214 (450)
T d1qsaa1 141 KLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFT 214 (450)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhc-----CCCChhh
Confidence 34444444433 34444445566677778899998888877765555555555555444444333221 2233333
Q ss_pred HHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009782 393 FVSLLSACAH--LGSVKVGERLFSVMVEKYGISPRVE--HYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYA 468 (526)
Q Consensus 393 ~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 468 (526)
...+..++.+ ..+.+.+...+........+.++.. ....+...+...+..+.+...+........+.....-.+..
T Consensus 215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~ 294 (450)
T d1qsaa1 215 RQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM 294 (450)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH
Confidence 3333333332 3577888888888776533333221 11222333345566777777774444444455444445555
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009782 469 CYLHGNVCMGETAAQKLFELEPDNEHNFELLIKIYGNAGRLDDVERVERMLVD 521 (526)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 521 (526)
....++...+...+..+-.-....+....=+++++...|+.++|...|..+..
T Consensus 295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 66778888888877765432222344457788888999999999888887754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.15 E-value=0.00013 Score=62.23 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=26.0
Q ss_pred ccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccCCC
Q 009782 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTA 157 (526)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 157 (526)
+.|++++|++.++..++.. +.+...+..+...++..|++++|...|+...+.+|
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P 61 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3444555555555444443 34444445555555555555555555554444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.052 Score=38.82 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHHHhcC---ChHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCcchH
Q 009782 424 PRVEHYACMVNLYGRAG---LIDEAYSMIVEKMEFEASP--VVWGALLYACYLHGNVCMGETAAQKLFELEPDNEHNF 496 (526)
Q Consensus 424 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (526)
|...+--.+..++++.. +.++++.++.+.+...|.. ..+-.|..+|.+.|+++.|.+.++++++++|++..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 34455555666666554 4567888886666666643 5667788888899999999999999999999987643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.84 E-value=0.091 Score=38.58 Aligned_cols=111 Identities=9% Similarity=-0.087 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 009782 405 SVKVGERLFSVMVEKYGISPRVEHYACMVNLYGRAGLIDEAYSMIVEKMEFEASPVVWGALLYACYL----HGNVCMGET 480 (526)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~ 480 (526)
|+++|.++|++..+. |. ...+..|. .....+.++|++++.+... .-++.....|...|.. ..|.++|.+
T Consensus 8 d~~~A~~~~~kaa~~-g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~-~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-NE---MFGCLSLV--SNSQINKQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHT-TC---TTHHHHHH--TCTTSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CC---hhhhhhhc--cccccCHHHHHHHHhhhhc-ccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 455666666666554 32 12222222 2233456666666644443 2233444444444443 346677777
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 009782 481 AAQKLFELEPDNEHNFELLIKIYGN----AGRLDDVERVERMLVDRGL 524 (526)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 524 (526)
+|+++.+.. ++.+...|+..|.. ..+.++|.+++++..+.|.
T Consensus 81 ~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 777776654 34556677777766 4577788888888777664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.50 E-value=0.047 Score=39.07 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009782 456 EASPVVWGALLYACYLHG---NVCMGETAAQKLFELEPDNE-HNFELLIKIYGNAGRLDDVERVERMLVDRG 523 (526)
Q Consensus 456 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 523 (526)
.|...+--...+++.++. +.++|+.+++.+++.+|.+. ..+..|+.+|.+.|++++|.+.++++.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 455555555667777665 45789999999999888764 678999999999999999999999988654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.27 E-value=0.45 Score=34.54 Aligned_cols=109 Identities=16% Similarity=0.060 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 009782 174 EYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGFGFDGFVLNALVDMYAK----CGDIVKAR 249 (526)
Q Consensus 174 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 249 (526)
|+++|++.|++..+.| +......+. .....+.++|.++++...+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4556666666655544 222222222 223345666666666666655 22333334444432 34556666
Q ss_pred HHHhhcCC-CCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 009782 250 TVFDRIGN-KDLISYNSMLTGYIH----HGLLVEAFDIFRGMILNG 290 (526)
Q Consensus 250 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 290 (526)
+.|++..+ .++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 66655543 233444444444444 345666666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.43 E-value=0.82 Score=32.20 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=66.2
Q ss_pred ccCChHHHHHHHHHHhhhccCCChhHHHHHHHHHHhcCChhHHHHHHhccccC-C------------------CCcccHH
Q 009782 103 QLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNR-T------------------AFAFPWN 163 (526)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~------------------~~~~~~~ 163 (526)
-.|..++..++..+..... +..-||-++--....-+-+...++++.+... + ......+
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd 90 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 90 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence 4566666666666665532 3333343333333333444444444433211 1 1113345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 009782 164 SLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGEKVHLDAVRFGF 225 (526)
Q Consensus 164 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 225 (526)
..++.+.+.|+-++-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 56667777777777777777765533 56666666777777777777777777777777664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.10 E-value=0.28 Score=32.71 Aligned_cols=62 Identities=10% Similarity=0.242 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhhccCCChhHHHHHHH
Q 009782 72 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLR 134 (526)
Q Consensus 72 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 134 (526)
.-++.+-++.+......|++....+.+++|.|.+++..|.++++-+.... ..+...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 34566677777788888889999999999999999999999888877543 334567766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.55 E-value=1.3 Score=29.50 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 009782 373 EALIYFEQMERDGVLPDHLTFVSLLSACAHLGSVKVGERLFSVMVEKYGISPRVEHYACMVN 434 (526)
Q Consensus 373 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 434 (526)
++.+-++.+....+-|++....+.++||.+.+++..|.++|+....+ ..++...|..+++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 45555666666778899999999999999999999999999988775 3344566766654
|