Citrus Sinensis ID: 009792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFLN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccHHHHccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccEEEEEEEEEEEEEEEEcccccEEEEEccccccccEEEccccccEEEEEEEcEEEcccccHHHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEEEEccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccHHHcccccccccHHHHHHcccccccHHHHcccccccHHHHHHccHHccEEEcccccccccccEEEEEcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccEEccEEEEcccEEEEEEEEEEEEEEEcccccEEEEEccEEEEEEEEEccccccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHcccHcccccccEEEEEccccccEEEEEEEEEcccccEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MAGIRFSILKSLcsssiypsfkprllhtsnsYFKLARYAEQKHVKLSCAVvnnnydnsrLHSALNSINNqlkvhgfapigktqchkanavssylptsknfcSRRLATfasispflghrsyssffgsktdksteidvpaassgsetdvsnhgivgsdsfdKIKDAWKSVVDGVSytgqkakdelSPQIEQLLdahpylrdvivpVSCYLTGTVLAWVVMPRVLRRFHKYaiqgpvsllsgglsieqvpyeksfwgaledPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSglsmqfskpfslgdtikagsveGQVVEMGLTTTTllsaekfpvivpnsmfSSQVIVNKSRAPWRALVIRIpmqiddldkvpqisdDVKSMLRSNtkvflgkeapycfLSQIESSFAELNVGCNLKQMVKFLFSCfncinfifln
Flexible Loop (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAassgsetdvsnhgivGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIpmqiddldkvPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFLN
Low Complexity Region (SEG)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFLN
Disordered region (IsUnstruct)
***IRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFF********************************SFDKIKDAWKSVVDGVSYTGQ*******PQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFL*
Disordered Region (DISOPRED)
*********K**********F**RLLHTSNSYFKLARYAEQKHVKLSCAVVNN************SINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPF**********************************NHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSI*GLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFLN
Disordered Region (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKS***************VSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFLN
Disordered Region (DISPRO)
************CSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY**F******************************GSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFLN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCFNCINFIFLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
Q8VZL4	497	Mechanosensitive ion chan	yes	no	0.782	0.826	0.645	1e-155
P0AEB5	343	MscS family inner membran	N/A	no	0.4	0.612	0.310	1e-20
P0AEB6	343	MscS family inner membran	N/A	no	0.4	0.612	0.310	1e-20
O25170	623	Uncharacterized MscS fami	yes	no	0.365	0.308	0.313	5e-16
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.365	0.308	0.308	2e-15
P0C0S3	286	Small-conductance mechano	no	no	0.337	0.618	0.271	8e-10
P0C0S1	286	Small-conductance mechano	N/A	no	0.337	0.618	0.271	8e-10
P0C0S2	286	Small-conductance mechano	N/A	no	0.337	0.618	0.271	8e-10
Q8L7W1	678	Mechanosensitive ion chan	no	no	0.297	0.230	0.282	1e-09
O52401	286	Small-conductance mechano	no	no	0.226	0.416	0.325	3e-09

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score =  550 bits (1417), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/420 (64%), Positives = 331/420 (78%), Gaps = 9/420 (2%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKP 390
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+P
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRP 343

Query: 391 FSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIR 450
           FS+GDTIKAGSVEGQV+EMGLTTT+LL+AEKFPV+VPNS+FSSQVIVNKSRA WRA+  +
Sbjct: 344 FSMGDTIKAGSVEGQVIEMGLTTTSLLNAEKFPVLVPNSLFSSQVIVNKSRAQWRAIASK 403

Query: 451 IPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
           IP+QIDDLD +PQIS+++K MLRSNTKVFLGKEAP+C+LS++E SFAEL +GCNL +M K
Sbjct: 404 IPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTIGCNLIRMGK 463

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 9/219 (4%)

Query: 293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
           AVIL+   FL     N F +    Q   G D      + RI  + + V+ ++   E  G+
Sbjct: 87  AVILTIKLFLL---INQFEK---QQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140

Query: 353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKA--GSVEGQVVEMG 410
           ++  +LT GGIGG+A   A +D+L N  SG+ + F +PFS+GD I++   ++EG V E+G
Sbjct: 141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIG 200

Query: 411 LTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKS 470
              T + + +  P+ VPNS+FSS  + N  R   R +   I ++ +D  KV  I + V+ 
Sbjct: 201 WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVRE 260

Query: 471 MLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV 509
           ML+++  +   ++    + +Q   S   + V C  K  V
Sbjct: 261 MLKNHPAI-DQRQTLLVYFNQFADSSLNIMVYCFTKTTV 298

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 9/219 (4%)

Query: 293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
           AVIL+   FL     N F +    Q   G D      + RI  + + V+ ++   E  G+
Sbjct: 87  AVILTIKLFLL---INQFEK---QQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140

Query: 353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKA--GSVEGQVVEMG 410
           ++  +LT GGIGG+A   A +D+L N  SG+ + F +PFS+GD I++   ++EG V E+G
Sbjct: 141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIG 200

Query: 411 LTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKS 470
              T + + +  P+ VPNS+FSS  + N  R   R +   I ++ +D  KV  I + V+ 
Sbjct: 201 WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVRE 260

Query: 471 MLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV 509
           ML+++  +   ++    + +Q   S   + V C  K  V
Sbjct: 261 MLKNHPAI-DQRQTLLVYFNQFADSSLNIMVYCFTKTTV 298

Escherichia coli O157:H7 (taxid: 83334)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 12/204 (5%)

Query: 290 WRGAV-ILSFVWF---LHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMA 345
           W GAV I+   W    L +         MA++S     +E +  + ++    +F++ L+ 
Sbjct: 321 WVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVALLG 380

Query: 346 LAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQ 405
           + +  G  V +I+   GIGG+A A A +DVL N  + + +     FS GD I  G VEG 
Sbjct: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGT 440

Query: 406 VVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQIS 465
           VVEMGL  TT+ + +   + VPNS  + + I N SR   R +  RI M+I       Q +
Sbjct: 441 VVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSR---RKVGRRIKMEIGLTYSSSQSA 497

Query: 466 -----DDVKSMLRSNTKVFLGKEA 484
                 D+K ML ++ K+  G ++
Sbjct: 498 LQLCVKDIKEMLENHPKIANGADS 521

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 12/204 (5%)

Query: 290 WRGAV-ILSFVWF---LHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMA 345
           W GAV I+   W    L +         +A++S     +E +  + ++    +F++ L+ 
Sbjct: 321 WVGAVYIMLLAWLVIALFKGYGEALVTNVATKSTHNFRKEVINLILKVVYFLIFIVALLG 380

Query: 346 LAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQ 405
           + +  G  V +I+   GIGG+A A A +DVL N  + + +     FS GD I  G VEG 
Sbjct: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGT 440

Query: 406 VVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQIS 465
           VVEMGL  TT+ + +   + VPNS  + + I N SR   R +  RI M+I       Q +
Sbjct: 441 VVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSR---RKVGRRIKMEIGLTYSSSQSA 497

Query: 466 -----DDVKSMLRSNTKVFLGKEA 484
                 D+K ML ++ K+  G ++
Sbjct: 498 LQLCVKDIKEMLENHPKIANGADS 521

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|P0C0S3|MSCS_SHIFL Small-conductance mechanosensitive channel OS=Shigella flexneri GN=mscS PE=3 SV=1

 Score = 65.9 bits (159), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
            + R  +N   R M S+ I     + + AL R    G+    L+A     GV   S++ V
Sbjct: 43  IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99

Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
            G  G+A   A +  L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159

Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
              +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++ 
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216

Query: 480 LGKE 483
             +E
Sbjct: 217 KDRE 220

Mechanosensitive channel that participates in the regulation of osmotic pressure changes within the cell. Forms an ion channel of 1.0 nanosiemens conductance with a slight preference for anions. The channel is sensitive to voltage.

Shigella flexneri (taxid: 623)

>sp|P0C0S1|MSCS_ECOLI Small-conductance mechanosensitive channel OS=Escherichia coli (strain K12) GN=mscS PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
            + R  +N   R M S+ I     + + AL R    G+    L+A     GV   S++ V
Sbjct: 43  IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99

Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
            G  G+A   A +  L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159

Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
              +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++ 
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216

Query: 480 LGKE 483
             +E
Sbjct: 217 KDRE 220

The channel pore is formed by TM3 and the loop between TM2 and TM3. After a sharp turn at Gly-113, an alpha-helix (residues 114-127) is oriented nearly parallel to the plane of the putative lipid bilayer. On the intracellular side of the channel, the permeation pathway of MscS does not connect directly to the cytoplasm but instead opens to a large chamber that is connected to the cytoplasm. This chamber resembles a molecular filter that could serve to prescreen large molecules before they are allowed passage to the transmembrane pore. The TM1 and TM2 helices appear to be likely candidates for mediating the tension and voltage sensitivities of MscS. Gating requires large rearrangements of at least the C-terminus.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0C0S2|MSCS_ECO57 Small-conductance mechanosensitive channel OS=Escherichia coli O157:H7 GN=mscS PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
            + R  +N   R M S+ I     + + AL R    G+    L+A     GV   S++ V
Sbjct: 43  IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99

Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
            G  G+A   A +  L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159

Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
              +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++ 
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216

Query: 480 LGKE 483
             +E
Sbjct: 217 KDRE 220

Mechanosensitive channel that participates in the regulation of osmotic pressure changes within the cell. Forms an ion channel of 1.0 nanosiemens conductance with a slight preference for anions. The channel is sensitive to voltage.

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 21/177 (11%)

Query: 348 EACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAG----SVE 403
           E  G + Q  LT GG+G V    A R++L N LS + +  ++PF L + I+       V 
Sbjct: 257 ELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVS 316

Query: 404 GQVVEMGLTTTTLLSA-EKFPVIVPNSMFSSQVIVN-KSRAPWRALVIRIPMQIDDLD-- 459
           G V ++G  + T++   ++  V +PN  FS  ++ N   +  WR   I+  + I  LD  
Sbjct: 317 GTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWR---IKTHLAISHLDVS 373

Query: 460 KVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLFSCF 516
           K+  I  D++ +L  N ++   K     FL  I+             Q ++ L SCF
Sbjct: 374 KINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPE----------NQALRILISCF 420

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.

Arabidopsis thaliana (taxid: 3702)

>sp|O52401|MSCS_EDWI9 Small-conductance mechanosensitive channel OS=Edwardsiella ictaluri (strain 93-146) GN=mscS PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 350 CGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEM 409
            GV   S++ V G  G+A   A +  L N  +G+ +   +PF  G+ +  G V G V E+
Sbjct: 89  LGVQTTSVIAVLGAAGLAVGLALQGSLSNFAAGVLLVLFRPFRAGEVVDLGGVTGTVREV 148

Query: 410 GLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDV 468
            + +TTL +A+   ++VPN    +  I+N SR P R + I + +  D D+D V ++  DV
Sbjct: 149 QIFSTTLATADNKVIVVPNGKIIAGNIINFSREPKRRIDIIVGVAYDADIDVVKRVLGDV 208

Mechanosensitive channel that participates in the regulation of osmotic pressure changes within the cell. Forms an ion channel of 1.0 nanosiemens conductance with a slight preference for anions. The channel is sensitive to voltage.

Edwardsiella ictaluri (strain 93-146) (taxid: 634503)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
225454344	599	PREDICTED: uncharacterized protein LOC10	0.954	0.836	0.653	0.0
224064055	534	predicted protein [Populus trichocarpa]	0.939	0.923	0.629	1e-177
449432136	521	PREDICTED: mechanosensitive ion channel	0.916	0.923	0.578	1e-167
449527268	521	PREDICTED: mechanosensitive ion channel	0.916	0.923	0.576	1e-167
224127740	387	predicted protein [Populus trichocarpa]	0.676	0.917	0.761	1e-165
356520379	539	PREDICTED: uncharacterized MscS family p	0.954	0.929	0.586	1e-163
356560335	536	PREDICTED: uncharacterized protein LOC10	0.944	0.925	0.586	1e-162
297810151	507	mechanosensitive ion channel domain-cont	0.895	0.927	0.573	1e-156
297745349	372	unnamed protein product [Vitis vinifera]	0.641	0.905	0.714	1e-154
22328173	497	Mechanosensitive ion channel protein [Ar	0.782	0.826	0.645	1e-154

>gi|225454344|ref|XP_002275920.1| PREDICTED: uncharacterized protein LOC100261915 [Vitis vinifera]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/508 (65%), Positives = 394/508 (77%), Gaps = 7/508 (1%)

Query: 6   FSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALN 65
           F ILKSLC     P  K     + +S    A+YA Q  +K S A  N +        A N
Sbjct: 65  FPILKSLCD----PISKTHSFRSYDSCLDFAKYAYQVELKSSYASSNRSNHTKESPFAAN 120

Query: 66  SINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFG 125
            +N + ++   A    TQC+KA  V+++ PT  N          S+ P   +RSYSS+FG
Sbjct: 121 FVNARFRIPSIASPVDTQCYKAKQVNAFSPTLLNSRFGSSIPLISVIPISKYRSYSSYFG 180

Query: 126 SKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK---DE 182
           SK DK  E +V AA+  SE DVSN G++GSD  DK+KD W+S VD  +Y GQKAK   DE
Sbjct: 181 SKGDKPQEKEVQAATGMSEPDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDE 240

Query: 183 LSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLS 242
           L+P ++QLLD+ PYL+ V++PV C LT T+LAW VMPR+LRRFHKYA QG   LL G L 
Sbjct: 241 LAPYVDQLLDSLPYLKTVVIPVGCTLTATILAWAVMPRLLRRFHKYATQGSAVLLLGSLP 300

Query: 243 IEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFL 302
            EQVPYEKSFW ALEDPVRYLITF++F QIG M+APTTIASQY+  AWRGA+ILSFVWFL
Sbjct: 301 EEQVPYEKSFWSALEDPVRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFL 360

Query: 303 HRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG 362
           HRWKTNVF RA+A+QS+ GLDREK+LALD++SSVGLFV+GLMALAEACGVAVQSILTVGG
Sbjct: 361 HRWKTNVFARALAAQSVVGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGG 420

Query: 363 IGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKF 422
           IGGVATAFASRD+LGNVLSGLSMQFSKPFSLGDTIKAGS+EGQVVEMGLTTT+LL+AEKF
Sbjct: 421 IGGVATAFASRDILGNVLSGLSMQFSKPFSLGDTIKAGSIEGQVVEMGLTTTSLLNAEKF 480

Query: 423 PVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGK 482
           PVIVPNS+FSSQVIVNKSRA W A+  +IP+Q D+LDK+PQISDD+K+MLRSN+K+FLGK
Sbjct: 481 PVIVPNSLFSSQVIVNKSRAQWHAMATKIPLQSDNLDKIPQISDDIKNMLRSNSKIFLGK 540

Query: 483 EAPYCFLSQIESSFAELNVGCNLKQMVK 510
           EAPYCFLS++E S+AEL +GCNLK M K
Sbjct: 541 EAPYCFLSRVERSYAELTIGCNLKHMSK 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064055|ref|XP_002301369.1| predicted protein [Populus trichocarpa] gi|222843095|gb|EEE80642.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 325/516 (62%), Positives = 392/516 (75%), Gaps = 23/516 (4%)

Query: 1   MAGIRFSILK-SLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNY--DN 57
           MAG+R S+LK SLC S    S   + L   N +    R A         A++N  Y  D 
Sbjct: 1   MAGLRLSMLKNSLCIS--INSLSWQSLQFCNVHGSTLRSA--------YAIINRGYYKDE 50

Query: 58  SRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGH 117
           SRL   L +     KV        +Q ++   V  +  TS N   R    F S+ P L +
Sbjct: 51  SRLAGNLTN----FKVVRSDTCVNSQSYRIEPVRGFSSTSSNVLFRSAVPFISMRPELSY 106

Query: 118 RSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQ 177
           RS+S   G+K DK    +VPA+S G++ DVSN G + SD  +K+K+AW+S VD V+Y+GQ
Sbjct: 107 RSFSWSSGAKVDKPVGNEVPASSGGNDVDVSNSGAIVSDWINKVKEAWQSTVDAVTYSGQ 166

Query: 178 KA---KDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPV 234
           KA    DEL+P  +QLLD+H YL++V+VPV   LTGTV+AWVVMPR+LRRFHKY++Q P 
Sbjct: 167 KAIETSDELTPYAQQLLDSHLYLKNVVVPVGSTLTGTVVAWVVMPRLLRRFHKYSLQTPA 226

Query: 235 SLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAV 294
           +LLSGG+S EQ+PYEKS  GALEDP+RYLITFMAF QI +MVAPTTIASQY+AQ WRGA 
Sbjct: 227 ALLSGGISGEQIPYEKSILGALEDPLRYLITFMAFSQIAVMVAPTTIASQYIAQVWRGAA 286

Query: 295 ILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAV 354
           ILSFVWFLHRWKTNVF R +AS   A +D+EK+L LDR+SSVGLFVIGLMALAEACGVAV
Sbjct: 287 ILSFVWFLHRWKTNVFNRVIAS---ATVDQEKLLTLDRVSSVGLFVIGLMALAEACGVAV 343

Query: 355 QSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTT 414
           QS LTVGGIGGVATAFA++DVLGNVLSGLSMQFSKPFSLGDTIKAGS+EGQVVEMGLTTT
Sbjct: 344 QSFLTVGGIGGVATAFAAKDVLGNVLSGLSMQFSKPFSLGDTIKAGSIEGQVVEMGLTTT 403

Query: 415 TLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRS 474
           +LL+ E+FPV+VPNS+FSSQVIVNKSRA WRA+V +IP+ +DD++K+PQIS+D+KSML S
Sbjct: 404 SLLNVEQFPVLVPNSLFSSQVIVNKSRAQWRAVVSKIPVIVDDVEKIPQISNDIKSMLNS 463

Query: 475 NTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
           N  VFLGKEAPYC+LS+IESSFAEL +GCNLKQM K
Sbjct: 464 NPNVFLGKEAPYCYLSRIESSFAELTLGCNLKQMSK 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432136|ref|XP_004133856.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/515 (57%), Positives = 389/515 (75%), Gaps = 34/515 (6%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +        H+   + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG------THR---IDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTT 415
           S+LTVGGIGGVATAFA+RD+LGN+LSGL+MQFS+PFSLGDTIKAG++EGQVVEMGL TT+
Sbjct: 332 SMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTS 391

Query: 416 LLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSN 475
           LLSAEKFPV+VPNS+FSSQVI+NKSRA WRA+V R+P+Q+DD+  V QI+DD+K+ML S+
Sbjct: 392 LLSAEKFPVVVPNSLFSSQVIINKSRAQWRAIVKRVPLQVDDISTVSQITDDIKNMLTSH 451

Query: 476 TKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
            KVFLGKEAPYCFLSQIES++AEL +GCNL++M K
Sbjct: 452 PKVFLGKEAPYCFLSQIESTYAELTLGCNLRKMGK 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527268|ref|XP_004170634.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 297/515 (57%), Positives = 388/515 (75%), Gaps = 34/515 (6%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +           + + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG---------TDRIDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTT 415
           S+LTVGGIGGVATAFA+RD+LGN+LSGL+MQFS+PFSLGDTIKAG++EGQVVEMGL TT+
Sbjct: 332 SMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTS 391

Query: 416 LLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSN 475
           LLSAEKFPV+VPNS+FSSQVI+NKSRA WRA+V R+P+Q+DD+  V QI+DD+K+ML S+
Sbjct: 392 LLSAEKFPVVVPNSLFSSQVIINKSRAQWRAIVKRVPLQVDDISTVSQITDDIKNMLTSH 451

Query: 476 TKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
            KVFLGKEAPYCFLSQIES++AEL +GCNL++M K
Sbjct: 452 PKVFLGKEAPYCFLSQIESTYAELTLGCNLRKMGK 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127740|ref|XP_002320152.1| predicted protein [Populus trichocarpa] gi|222860925|gb|EEE98467.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/361 (76%), Positives = 327/361 (90%), Gaps = 6/361 (1%)

Query: 153 VGSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLT 209
           +GSD  DK+K+AW+S V  V+Y+ QKAK+   EL+P ++QLLD+HPYL++V+VPV   LT
Sbjct: 2   IGSDWIDKVKEAWQSAVHAVTYSEQKAKEISAELTPYVQQLLDSHPYLKNVVVPVGWTLT 61

Query: 210 GTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAF 269
           GTV+AWVVMPR+LRRFHKY++Q PV+LLSGG S EQ+ YEKS WGALEDP+RY+ITFMAF
Sbjct: 62  GTVVAWVVMPRLLRRFHKYSLQTPVALLSGGTSGEQISYEKSIWGALEDPLRYVITFMAF 121

Query: 270 VQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLA 329
            QI +MVAPTTIASQY+AQAWRGAVILSFVWFLHRWKTNVF R +AS   A +DREK+L 
Sbjct: 122 SQIAVMVAPTTIASQYIAQAWRGAVILSFVWFLHRWKTNVFNRVIAS---ATVDREKLLT 178

Query: 330 LDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSK 389
           LDR+SSVGLFVIG+MALAEACGVAVQSILTVGGIGGVATAFA++DVLGNVLSGLSMQFSK
Sbjct: 179 LDRVSSVGLFVIGVMALAEACGVAVQSILTVGGIGGVATAFAAKDVLGNVLSGLSMQFSK 238

Query: 390 PFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVI 449
           PFSLGDTIKAG+VEGQVVEMGLTTT+LL+AEKFPV+VPN++FSSQVIVNKSRA WRA+V 
Sbjct: 239 PFSLGDTIKAGAVEGQVVEMGLTTTSLLNAEKFPVLVPNALFSSQVIVNKSRAQWRAMVS 298

Query: 450 RIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV 509
           +IP+ +DD++K+PQIS+D+K+ML+SN  +FLGKEAPYC+LS+IESSFAEL +GCNLKQM 
Sbjct: 299 KIPVTVDDVEKIPQISNDIKNMLKSNANIFLGKEAPYCYLSRIESSFAELTLGCNLKQMS 358

Query: 510 K 510
           K
Sbjct: 359 K 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520379|ref|XP_003528840.1| PREDICTED: uncharacterized MscS family protein aq_812-like [Glycine max]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 301/513 (58%), Positives = 377/513 (73%), Gaps = 12/513 (2%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+   + +  +         +L    +++ Y    L
Sbjct: 1   MAAVRSSSVRRL-GSTIQGSFNMELVQHCHYHHSMC----MNLARLPSDSLSHPYYKREL 55

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
             A N  +N         +G +      A  S  PT   +C R    FAS+S  L HR Y
Sbjct: 56  QFAKNRFSNLAS----ESLGSSHHFGTRASVSVKPTFSGYCFRSALPFASMSHVLNHRMY 111

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           SS  G K  +    +V A S  ++ + +   +VG D  ++IKDAWKSV +  SY G K K
Sbjct: 112 SSSVGDKGSRDGGTEVSAGSGATDINTTGDSVVGGDWAERIKDAWKSVAEAASYAGGKVK 171

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              D+L+P  +QLLD+HPYL  V++PV+  LT T+LAW ++PR+LR+FHKYA QGPVSLL
Sbjct: 172 ETSDDLTPFAQQLLDSHPYLDKVVIPVAGTLTATILAWFLLPRILRKFHKYATQGPVSLL 231

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
              +S+E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI+S
Sbjct: 232 PASVSVEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPLWRGAVIVS 291

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI 357
           FVWFLHRWKTN+F R ++SQS+ GLD+EK+LALD+ISS+GLFVIG+MALAEACGVAVQS+
Sbjct: 292 FVWFLHRWKTNIFARTLSSQSLLGLDKEKVLALDKISSIGLFVIGIMALAEACGVAVQSV 351

Query: 358 LTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLL 417
           +TVGGIGGVATAFA++D+LGNV SGLSMQFSKPFS+GDTIKAGS+EGQVVEMGLT+T+LL
Sbjct: 352 VTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTSTSLL 411

Query: 418 SAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTK 477
           S+EKFPVIVPNS FSSQVIVNKSRA + A++ +IP+Q +DL K+P ISDDVKSMLRSN K
Sbjct: 412 SSEKFPVIVPNSFFSSQVIVNKSRAEYLAIITKIPLQTEDLSKIPPISDDVKSMLRSNAK 471

Query: 478 VFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
           VFLGK+ PYCFLS+IESS+AEL +G NLK M K
Sbjct: 472 VFLGKDVPYCFLSRIESSYAELTLGYNLKHMRK 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560335|ref|XP_003548448.1| PREDICTED: uncharacterized protein LOC100814954 [Glycine max]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 302/515 (58%), Positives = 374/515 (72%), Gaps = 19/515 (3%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+H S     LAR+             ++++++   
Sbjct: 1   MAAVRSSSVRRL-GSTIKGSFSMELVHHSMC-MNLARFP------------SDSFNDPYY 46

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPF-LGHRS 119
              L    NQ        +G +      A     PT   +C      FAS+S   L  R 
Sbjct: 47  KRELQFSKNQFSNLASESLGSSHHFGTRANVLVKPTFSGYCFWSSLPFASMSNHVLNRRM 106

Query: 120 YSSF-FGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           YSS   G K  +    +V A S  S+ +     +VG D  ++IKDAWKSV +  SY G K
Sbjct: 107 YSSSSVGDKGSRDGGTEVSAGSGASDMNTGGDSVVGGDWAERIKDAWKSVAEAASYAGDK 166

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
            K   D+L+P  +QLLD+HPYL  V++PV   LT T++AW ++PR+LR+FHKYA+QGPVS
Sbjct: 167 VKETSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATIIAWFLLPRILRKFHKYAMQGPVS 226

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           LL   ++ E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI
Sbjct: 227 LLPASVAGEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPVWRGAVI 286

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           +SFVWFLHRWKTNVF R+++SQS+ GLDREK+ ALD+ISS+GLFVIG+MALAEACGVAVQ
Sbjct: 287 VSFVWFLHRWKTNVFARSLSSQSLLGLDREKVFALDKISSIGLFVIGIMALAEACGVAVQ 346

Query: 356 SILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTT 415
           SI+TVGGIGGVATAFA++D+LGNV SGLSMQFSKPFS+GDTIKAGS+EGQVVEMGLT+T+
Sbjct: 347 SIVTVGGIGGVATAFATKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTSTS 406

Query: 416 LLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSN 475
           LLS+EKFPVIVPNS FSSQVIVNKSRA +RA++ +IP+Q +DL K+PQISDDVKSMLRSN
Sbjct: 407 LLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQTEDLSKIPQISDDVKSMLRSN 466

Query: 476 TKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
             VFLGK+ PYCFLS+IESS+AEL +G NLK M K
Sbjct: 467 ANVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRK 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810151|ref|XP_002872959.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318796|gb|EFH49218.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/513 (57%), Positives = 363/513 (70%), Gaps = 43/513 (8%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MAG+R S+LKSL   SI  S KP     S S F      ++K    S  ++NN++  S  
Sbjct: 1   MAGVRLSLLKSL-QRSINSSSKPHSAAKSLSGF------QKKEPYASFNLLNNSHARSF- 52

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
                         G  P+   +   +    + L  +K F         SI PFLGH SY
Sbjct: 53  ------------TCGINPLDGPKASPSMVSFTRLHNAKPFN-------YSI-PFLGHSSY 92

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           +  F SK+D      V     G+  D+        D  +K KD  ++ VD VS T +K K
Sbjct: 93  ARAFSSKSDGI----VSPGGDGNGNDI--------DWVEKAKDVLQTSVDAVSETARKTK 140

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              DE+ P ++Q LD++PYL++VIVP+S  +TGT+ AW+VMPR+LRRFH YA+Q    LL
Sbjct: 141 EASDEMIPHVQQFLDSNPYLKEVIVPISLTMTGTLFAWLVMPRILRRFHTYALQSSAKLL 200

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
             G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY +   +GAVILS
Sbjct: 201 PVGFSNEDVPYEKSFWGALEDPARYLVTFVAFAQIAAMVAPTTIAAQYFSPTVKGAVILS 260

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI 357
            VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AEACGVAVQSI
Sbjct: 261 LVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSI 320

Query: 358 LTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLL 417
           LTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+PFS+GDTIKAGSVEGQVVEMGLTTT+LL
Sbjct: 321 LTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGDTIKAGSVEGQVVEMGLTTTSLL 380

Query: 418 SAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTK 477
           +A+KFPV+VPNS+FSSQVIVNKSRA WRA+  +IP+QIDDLD +PQIS+++K MLRSNTK
Sbjct: 381 NADKFPVLVPNSLFSSQVIVNKSRAQWRAIASKIPLQIDDLDTIPQISNEIKEMLRSNTK 440

Query: 478 VFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
           VFLGKEAP+C+LS++  SFAEL +GCNLK M K
Sbjct: 441 VFLGKEAPHCYLSRVGKSFAELTIGCNLKHMGK 473

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745349|emb|CBI40429.3| unnamed protein product [Vitis vinifera]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/371 (71%), Positives = 303/371 (81%), Gaps = 34/371 (9%)

Query: 143 SETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK---DELSPQIEQLLDAHPYLRD 199
           SE DVSN G++GSD  DK+KD W+S VD  +Y GQKAK   DEL+P ++QLL        
Sbjct: 2   SEPDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDELAPYVDQLL-------- 53

Query: 200 VIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDP 259
                                  RRFHKYA QG   LL G L  EQVPYEKSFW ALEDP
Sbjct: 54  -----------------------RRFHKYATQGSAVLLLGSLPEEQVPYEKSFWSALEDP 90

Query: 260 VRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSI 319
           VRYLITF++F QIG M+APTTIASQY+  AWRGA+ILSFVWFLHRWKTNVF RA+A+QS+
Sbjct: 91  VRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFLHRWKTNVFARALAAQSV 150

Query: 320 AGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNV 379
            GLDREK+LALD++SSVGLFV+GLMALAEACGVAVQSILTVGGIGGVATAFASRD+LGNV
Sbjct: 151 VGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGGIGGVATAFASRDILGNV 210

Query: 380 LSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNK 439
           LSGLSMQFSKPFSLGDTIKAGS+EGQVVEMGLTTT+LL+AEKFPVIVPNS+FSSQVIVNK
Sbjct: 211 LSGLSMQFSKPFSLGDTIKAGSIEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNK 270

Query: 440 SRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAEL 499
           SRA W A+  +IP+Q D+LDK+PQISDD+K+MLRSN+K+FLGKEAPYCFLS++E S+AEL
Sbjct: 271 SRAQWHAMATKIPLQSDNLDKIPQISDDIKNMLRSNSKIFLGKEAPYCFLSRVERSYAEL 330

Query: 500 NVGCNLKQMVK 510
            +GCNLK M K
Sbjct: 331 TIGCNLKHMSK 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328173|ref|NP_567165.2| Mechanosensitive ion channel protein [Arabidopsis thaliana] gi|75161661|sp|Q8VZL4.1|MSL1_ARATH RecName: Full=Mechanosensitive ion channel protein 1, mitochondrial; AltName: Full=Mechanosensitive channel of small conductance-like 1; AltName: Full=MscS-Like protein 1; Flags: Precursor gi|17381142|gb|AAL36383.1| unknown protein [Arabidopsis thaliana] gi|20465557|gb|AAM20261.1| unknown protein [Arabidopsis thaliana] gi|51971068|dbj|BAD44226.1| unknown protein [Arabidopsis thaliana] gi|51971355|dbj|BAD44342.1| unknown protein [Arabidopsis thaliana] gi|332656450|gb|AEE81850.1| Mechanosensitive ion channel protein [Arabidopsis thaliana]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/420 (64%), Positives = 331/420 (78%), Gaps = 9/420 (2%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKP 390
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+P
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRP 343

Query: 391 FSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIR 450
           FS+GDTIKAGSVEGQV+EMGLTTT+LL+AEKFPV+VPNS+FSSQVIVNKSRA WRA+  +
Sbjct: 344 FSMGDTIKAGSVEGQVIEMGLTTTSLLNAEKFPVLVPNSLFSSQVIVNKSRAQWRAIASK 403

Query: 451 IPMQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
           IP+QIDDLD +PQIS+++K MLRSNTKVFLGKEAP+C+LS++E SFAEL +GCNL +M K
Sbjct: 404 IPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTIGCNLIRMGK 463

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
TAIR|locus:2126061	497	AT4G00290 [Arabidopsis thalian	0.845	0.893	0.616	7.8e-142
TAIR|locus:505006411	263	AT4G00234 "AT4G00234" [Arabido	0.487	0.973	0.565	1.1e-71
UNIPROTKB|P0AEB5	343	ynaI "mechanosensitive channel	0.4	0.612	0.305	6.4e-22
UNIPROTKB|Q83CN5	383	CBU_1075 "Mechanosensitive ion	0.531	0.728	0.243	6.3e-17
TIGR_CMR|CBU_1075	383	CBU_1075 "membrane protein, pu	0.531	0.728	0.243	6.3e-17
TIGR_CMR|GSU_2316	291	GSU_2316 "mechanosensitive ion	0.222	0.402	0.305	6.8e-13
UNIPROTKB|Q74AJ7	348	GSU2357 "Mechanosensitive ion	0.398	0.600	0.264	1.8e-12
TIGR_CMR|GSU_2357	348	GSU_2357 "conserved hypothetic	0.398	0.600	0.264	1.8e-12
TIGR_CMR|NSE_0847	337	NSE_0847 "mechanosensitive ion	0.260	0.406	0.307	4.4e-12
UNIPROTKB|Q74CP0	364	mscS-1 "Small-conductance mech	0.384	0.554	0.270	4.6e-12

TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
 Identities = 285/462 (61%), Positives = 347/462 (75%)

Query:    62 SALNSINNQLKVHGFAPI--GKTQCH-KANAVSSYL------PTSKNFCSR-RLATFASI 111
             S L SI   +K H  A    G    H +A    + L      P+  +F S  RL   A  
Sbjct:     7 SLLKSIQRSIKPHATAKSCSGLLNSHARAFTCGNLLDGPKASPSMISFSSNIRLHNDAKP 66

Query:   112 SPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDG 171
               +LGH SY+  F SK+D    I V +  +GS     N    G+D  +K KD  ++ VD 
Sbjct:    67 FNYLGHSSYARAFSSKSDDFGSI-VASGVTGSGDGNGN----GNDWVEKAKDVLQTSVDA 121

Query:   172 VSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKY 228
             V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ AWVVMPR+LRRFH Y
Sbjct:   122 VTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLFAWVVMPRILRRFHTY 181

Query:   229 AIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQ 288
             A+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY + 
Sbjct:   182 AMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSP 241

Query:   289 AWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAE 348
               +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AE
Sbjct:   242 TVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAE 301

Query:   349 ACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVE 408
             ACGVAVQSILTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+PFS+GDTIKAGSVEGQV+E
Sbjct:   302 ACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGDTIKAGSVEGQVIE 361

Query:   409 MGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDV 468
             MGLTTT+LL+AEKFPV+VPNS+FSSQVIVNKSRA WRA+  +IP+QIDDLD +PQIS+++
Sbjct:   362 MGLTTTSLLNAEKFPVLVPNSLFSSQVIVNKSRAQWRAIASKIPLQIDDLDMIPQISNEI 421

Query:   469 KSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVK 510
             K MLRSNTKVFLGKEAP+C+LS++E SFAEL +GCNL +M K
Sbjct:   422 KEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTIGCNLIRMGK 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:505006411 AT4G00234 "AT4G00234" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 151/267 (56%), Positives = 191/267 (71%)

Query:    99 NFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDS 157
             +F S  RL + A    +L H SY+  F SK+D    I V +  +GS     N    G+D 
Sbjct:     3 SFSSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSI-VASGVTGSGD--GN----GNDW 55

Query:   158 FDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA 214
              +K KD  ++ V+ V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ A
Sbjct:    56 VEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLFA 115

Query:   215 WVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM 274
             W+VMPR+LRRFH YA+Q    LL  G S E +PYEKSFWGALEDP RYL+TF+AF QI  
Sbjct:   116 WIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIAA 175

Query:   275 MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRIS 334
             MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDR+K+L LD++S
Sbjct:   176 MVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKVS 235

Query:   335 SVGLFVIGLMALAEACGVAVQSILTVG 361
             SVGLF IGLMA AEACGVAVQSILTVG
Sbjct:   236 SVGLFAIGLMASAEACGVAVQSILTVG 262

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 262 (97.3 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 67/219 (30%), Positives = 113/219 (51%)

Query:   293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
             AVIL+   FL     N F +    +   G D      + RI  + + V+ ++   E  G+
Sbjct:    87 AVILTIKLFL---LINQFEKQQIKK---GRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140

Query:   353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAG--SVEGQVVEMG 410
             ++  +LT GGIGG+A   A +D+L N  SG+ + F +PFS+GD I++   ++EG V E+G
Sbjct:   141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIG 200

Query:   411 LTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKS 470
                T + + +  P+ VPNS+FSS  + N  R   R +   I ++ +D  KV  I + V+ 
Sbjct:   201 WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVRE 260

Query:   471 MLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV 509
             ML+++  +   ++    + +Q   S   + V C  K  V
Sbjct:   261 MLKNHPAIDQ-RQTLLVYFNQFADSSLNIMVYCFTKTTV 298

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=IGI;ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 233 (87.1 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 71/292 (24%), Positives = 141/292 (48%)

Query:   190 LLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYE 249
             LL+ H  +  +++ +      + L W++  R+L RF +   +  V L +   ++ Q P +
Sbjct:     4 LLNTHNSIIKIVLLLIIGSIASFLEWLLYRRLLPRFQR---RQRVWLQAFLQALHQ-PLQ 59

Query:   250 KSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309
                W  +   V  ++  + F   G   A   ++S  L   +   VI  F     R+  + 
Sbjct:    60 VYIWVIILSFVASILATLFFFNGGFTDA---LSSTRLI--FTLVVIFWFAMRFIRYLEDG 114

Query:   310 FTRAMASQSIAGL-DREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVAT 368
              T   A Q +  + D   + A+ +++ V +    L+ L +  G+ + ++L  GG+G    
Sbjct:   115 MTH-QARQKVGKVSDETSVHAIAQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVI 173

Query:   369 AFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGS--VEGQVVEMGLTTTTLLSAEKFPVIV 426
              FA++D LGN   G+ + + +PFS+GD I++    +EG V  +G   T + + +K  + V
Sbjct:   174 GFAAKDTLGNFFGGMMIYWDRPFSVGDWIRSPDRQIEGTVENIGWRLTRIRTFDKRSLYV 233

Query:   427 PNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKV 478
             PN + S+  + N SR   R L I + ++  D  K+  ++  ++ MLR++ ++
Sbjct:   234 PNGILSNVAVENPSRMTNRRLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEI 285

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 233 (87.1 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 71/292 (24%), Positives = 141/292 (48%)

Query:   190 LLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYE 249
             LL+ H  +  +++ +      + L W++  R+L RF +   +  V L +   ++ Q P +
Sbjct:     4 LLNTHNSIIKIVLLLIIGSIASFLEWLLYRRLLPRFQR---RQRVWLQAFLQALHQ-PLQ 59

Query:   250 KSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309
                W  +   V  ++  + F   G   A   ++S  L   +   VI  F     R+  + 
Sbjct:    60 VYIWVIILSFVASILATLFFFNGGFTDA---LSSTRLI--FTLVVIFWFAMRFIRYLEDG 114

Query:   310 FTRAMASQSIAGL-DREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVAT 368
              T   A Q +  + D   + A+ +++ V +    L+ L +  G+ + ++L  GG+G    
Sbjct:   115 MTH-QARQKVGKVSDETSVHAIAQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVI 173

Query:   369 AFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGS--VEGQVVEMGLTTTTLLSAEKFPVIV 426
              FA++D LGN   G+ + + +PFS+GD I++    +EG V  +G   T + + +K  + V
Sbjct:   174 GFAAKDTLGNFFGGMMIYWDRPFSVGDWIRSPDRQIEGTVENIGWRLTRIRTFDKRSLYV 233

Query:   427 PNSMFSSQVIVNKSRAPWRALVIRIPMQIDDLDKVPQISDDVKSMLRSNTKV 478
             PN + S+  + N SR   R L I + ++  D  K+  ++  ++ MLR++ ++
Sbjct:   234 PNGILSNVAVENPSRMTNRRLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEI 285

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|GSU_2316 GSU_2316 "mechanosensitive ion channel family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 189 (71.6 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 36/118 (30%), Positives = 69/118 (58%)

Query:   338 LFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
             +  IG + + +  G+ + ++  + G  G+   F  ++++ N +SG+ + F +P  +GD I
Sbjct:    79 IIAIGFIVILQTAGIDLTALNVLAGAVGIGVGFGLQNIVNNFVSGIIILFERPIKVGDRI 138

Query:   398 KAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI 455
               G+VEG VV +G  +TT+++ +   +IVPNS F ++ +VN S    R +  RIP+ +
Sbjct:   139 VVGTVEGDVVHIGGRSTTVVTNDNITIIVPNSKFITENVVNWSHNE-RKVRFRIPVSV 195

GO:0005216 "ion channel activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

UNIPROTKB|Q74AJ7 GSU2357 "Mechanosensitive ion channel family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 193 (73.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 59/223 (26%), Positives = 109/223 (48%)

Query:   258 DPVRYLITFMAFVQ--IGMMV-APTTIASQYLA-QAWRGAVILSFVWFLHRWKTNVFTRA 313
             D +R L+ + A +    G+    P T+  Q LA   +   +IL    F  R      T  
Sbjct:    52 DSLRGLLLYSALLTGLYGVATQVPMTVGLQRLAGNIFLVTIILVATLFFMRLAAGFVTH- 110

Query:   314 MASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASR 373
              A +++       +     ++ V +F IG++ + ++ G+++  ILT  G+GG+A A A +
Sbjct:   111 YAKKAVL----PSISIFSNLAKVSVFSIGILIILQSLGISIAPILTALGVGGLAVALALQ 166

Query:   374 DVLGNVLSGLSMQFSKPFSLGDTIK-AGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFS 432
             D L N+ +GL +  ++    GD I+ A   EG V ++    TT+ +     VI+PNS  +
Sbjct:   167 DTLSNIFAGLHIIATRQIRQGDYIRLASGEEGYVNDITWRNTTVQTLPNNMVIIPNSKLA 226

Query:   433 SQVIVNKSRAPWRALVIRIPMQID---DLDKVPQISDDVKSML 472
               ++ N +  P R + + + + +    DLD V +++ +V S L
Sbjct:   227 GAIVTNYN-LPDREMAVLVQVGVSYASDLDHVERVTIEVASEL 268

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2357 GSU_2357 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 193 (73.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 59/223 (26%), Positives = 109/223 (48%)

Query:   258 DPVRYLITFMAFVQ--IGMMV-APTTIASQYLA-QAWRGAVILSFVWFLHRWKTNVFTRA 313
             D +R L+ + A +    G+    P T+  Q LA   +   +IL    F  R      T  
Sbjct:    52 DSLRGLLLYSALLTGLYGVATQVPMTVGLQRLAGNIFLVTIILVATLFFMRLAAGFVTH- 110

Query:   314 MASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASR 373
              A +++       +     ++ V +F IG++ + ++ G+++  ILT  G+GG+A A A +
Sbjct:   111 YAKKAVL----PSISIFSNLAKVSVFSIGILIILQSLGISIAPILTALGVGGLAVALALQ 166

Query:   374 DVLGNVLSGLSMQFSKPFSLGDTIK-AGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFS 432
             D L N+ +GL +  ++    GD I+ A   EG V ++    TT+ +     VI+PNS  +
Sbjct:   167 DTLSNIFAGLHIIATRQIRQGDYIRLASGEEGYVNDITWRNTTVQTLPNNMVIIPNSKLA 226

Query:   433 SQVIVNKSRAPWRALVIRIPMQID---DLDKVPQISDDVKSML 472
               ++ N +  P R + + + + +    DLD V +++ +V S L
Sbjct:   227 GAIVTNYN-LPDREMAVLVQVGVSYASDLDHVERVTIEVASEL 268

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|NSE_0847 NSE_0847 "mechanosensitive ion channel family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 189 (71.6 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 43/140 (30%), Positives = 78/140 (55%)

Query:   338 LFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
             L V+GLM L +   V +  IL VGGIGGV    AS+D+  +    +++   +PF +GD I
Sbjct:   127 LLVVGLMIL-DKLNVNISGILAVGGIGGVVIGLASKDLFSSFFGFITILLDRPFKVGDLI 185

Query:   398 KAG--SVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI 455
              +   ++ G V ++    T +++ EK P+ +PN++FS+ VI N+S    R +   +  + 
Sbjct:   186 YSSDRNIMGVVDKITWRFTRVITLEKKPMYIPNAIFSTIVIQNESEVLARRIDEVLKFEF 245

Query:   456 DDLDKVPQISDDVKSMLRSN 475
              + + +PQ + ++   L +N
Sbjct:   246 RESEMIPQFTKEMNLFLENN 265

GO:0005216 "ion channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q74CP0 mscS-1 "Small-conductance mechanosensitive ion channel" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 190 (71.9 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 57/211 (27%), Positives = 107/211 (50%)

Query:   294 VILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVA 353
             V+ +  W +       +   +A +   G+DR+ +  L+++ ++ L  I LM +       
Sbjct:   113 VVTNIAWRITNELLGWYGSRLAERHGGGVDRQIIPPLEKLITIFLAGIALMVVLRHFNYD 172

Query:   354 VQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVE-GQVVEMGLT 412
             + S++T  GIG +A   A+++ L N++SG ++   +PF +GD I+  S + G V ++GL 
Sbjct:   173 ILSVVTALGIGSLAIGMAAKETLANMISGFTLMVDRPFRIGDRIQLASGQWGDVADIGLR 232

Query:   413 TTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALV-IRIPMQID-DLDKVPQISDDVKS 470
             TT + + +   +I+PNS   +  I+N +    RA   I + +  D D+++   +   V++
Sbjct:   233 TTKIKTVDNTLLIIPNSELCNTTIINLAFPDVRAKGRINVGISYDNDVERAKSLL--VET 290

Query:   471 MLRSNTKVFLGKEAPYCFLSQIESSFAELNV 501
              L S  +V L + AP  F      S   LNV
Sbjct:   291 AL-SVPEV-LREPAPEAFFVSFGDS--ALNV 317

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZL4	MSL1_ARATH	No assigned EC number	0.6452	0.7828	0.8269	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026926001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (540 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	525
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	2e-31
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	4e-21
PRK10334	286	PRK10334, PRK10334, mechanosensitive channel MscS;	6e-12
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	9e-11
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	8e-05
PRK10929	1109	PRK10929, PRK10929, putative mechanosensitive chan	8e-05

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score =  119 bits (302), Expect = 2e-31
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 1/158 (0%)

Query: 333 ISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFS 392
           I    + V+G++ +    GV V ++L   G  G+A  FA +D++ N++SG+ + F KPF 
Sbjct: 1   ILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFK 60

Query: 393 LGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIP 452
           +GD I+ G VEG V ++G+ +TT+ + +   V +PNS   +  I+N SR+P R + + I 
Sbjct: 61  IGDWIEIGDVEGTVEDIGIRSTTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVEVSIG 120

Query: 453 MQID-DLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFL 489
           +    D  K+ ++ + +K     +  V    E P  F 
Sbjct: 121 VAYSSDPKKLEKVIEILKEAAYEHPLVLKDPEPPVVFG 158

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 93.8 bits (233), Expect = 4e-21
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 252 FWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFT 311
             G L   +R L+  +  + I  ++                 V L     L      +  
Sbjct: 31  LNGLLLILLRKLLLLLLILLIAFLLI-------------AYLVKLLLRSLL--LLKALIR 75

Query: 312 RAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFA 371
           R     +++         L  +  + + V+ L+ +    GV V S+L   G  G+A   A
Sbjct: 76  RLARETTLSVF-------LSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLA 128

Query: 372 SRDVLGNVLSGLSMQFSKPFSLGDTIKAGS-VEGQVVEMGLTTTTLLSAEKFPVIVPNSM 430
            +D+L N+++G+ +   +PF +GD I+ GS VEG V ++GL +TT+ + +   V +PNS 
Sbjct: 129 LQDLLSNLIAGIFLLLERPFKVGDWIEIGSGVEGTVEDIGLRSTTIRTLDGRIVTIPNSK 188

Query: 431 FSSQVIVNKSRAPWRALVIRIP-MQIDDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFL 489
             +  +VN SR P R + +++      DL+K  +I   +K +L    +V   +  P   +
Sbjct: 189 LFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPEVLKIEPEPVIGV 245

Query: 490 SQIESS 495
           S++  S
Sbjct: 246 SELGDS 251

Length = 316

>gnl|CDD|182386 PRK10334, PRK10334, mechanosensitive channel MscS; Provisional

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 7/181 (3%)

Query: 304 RWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGI 363
           R  +N   R M S+ I     + + AL R    G+    L+A     GV   S++ V G 
Sbjct: 46  RMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAVLGA 102

Query: 364 GGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFP 423
            G+A   A +  L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+   
Sbjct: 103 AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKI 162

Query: 424 VIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVFLGK 482
           +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++   +
Sbjct: 163 IVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDR 219

Query: 483 E 483
           E
Sbjct: 220 E 220

Length = 286

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 14/180 (7%)

Query: 292 GAVILSFVWFLHRW-----KTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMAL 346
             ++    + L R      +  V  R                ++  +    L  IG +  
Sbjct: 564 AVLLFLITYVLTRNLPGWLEVRVLQRLDLDAGTR-------YSITTLLGYLLIAIGGLVG 616

Query: 347 AEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQV 406
               G+ + S+  + G   V   F  ++++ N +SGL + F +P  +GDT+  G+V G V
Sbjct: 617 LSTLGIDLSSLQWLAGALSVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTIGTVSGTV 676

Query: 407 VEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKS-RAPWRALVIRIPMQID-DLDKVPQI 464
            ++ +  TT+ + ++  VIVPNS F ++ ++N S R     LVI + +    D + V ++
Sbjct: 677 RKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPELVREL 736

Length = 835

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 20/112 (17%)

Query: 358  LTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLL 417
            L+VG +G     F  +++  N +SGL + F +P  +GDT+  G+  G V ++ +  TT+ 
Sbjct: 912  LSVG-LG-----FGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRIRATTIT 965

Query: 418  SAEKFPVIVPNSMFSSQVIVNKSRAPWRAL---VIRIPMQI-----DDLDKV 461
              ++  VIVPN  F ++ ++N     W +L   V R+ +++      DL+KV
Sbjct: 966  DFDRKEVIVPNKAFVTERLIN-----W-SLSDTVTRVVIKVGVAYGSDLEKV 1011

Length = 1113

>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 365 GVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPV 424
           GV   F  +++  N +SGL + F KP  +GDT+    + G V ++    TT+   ++  +
Sbjct: 910 GVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEI 969

Query: 425 IVPNSMFSSQVIVNKS 440
           IVPN  F ++  +N S
Sbjct: 970 IVPNKAFITEQFINWS 985

Length = 1109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
PRK10334	286	mechanosensitive channel MscS; Provisional	100.0
PRK11465	741	putative mechanosensitive channel protein; Provisi	100.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	100.0
PRK11281	1113	hypothetical protein; Provisional	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
COG3264	835	Small-conductance mechanosensitive channel [Cell e	100.0
COG0668	316	MscS Small-conductance mechanosensitive channel [C	99.98
KOG4629	714	consensus Predicted mechanosensitive ion channel [	99.67
PF05552	53	TM_helix: Conserved TM helix; InterPro: IPR008910	87.8
PF12794	340	MscS_TM: Mechanosensitive ion channel inner membra	86.31
PRK11281	1113	hypothetical protein; Provisional	84.39

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=100.00  E-value=4.7e-40  Score=334.42  Aligned_cols=223  Identities=23%  Similarity=0.329  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 009792          283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG  362 (525)
Q Consensus       283 ~~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lG  362 (525)
                      ..+.++++.+++++.++|++.+++.+++.+.+.++..   +......+.++++++++++++++++..+|++.+++++++|
T Consensus        25 ~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G  101 (286)
T PRK10334         25 LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG  101 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            3467788999999999999999999999887755433   5667778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCC
Q 009792          363 IGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRA  442 (525)
Q Consensus       363 i~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~  442 (525)
                      ++|+|+|||+||+++|++||++|+++|||++||||+++|.+|+|++|++|+|++|++||+.++|||+.+.+++|+|||+.
T Consensus       102 ~~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~  181 (286)
T PRK10334        102 AAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSRE  181 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCCccc
Q 009792          443 PWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFL  512 (525)
Q Consensus       443 ~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~e  512 (525)
                      +.||+.++++++| +|+++++++   +++.++++|.+. ++|+|.|.+.+++++++++++++|+++.+.++
T Consensus       182 ~~rr~~~~v~V~y~~d~~~~~~i---l~~~~~~~~~vl-~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~  248 (286)
T PRK10334        182 PVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL-KDREMTVRLNELGASSINFVVRVWSNSGDLQN  248 (286)
T ss_pred             CeEEEEEEEEecCCCCHHHHHHH---HHHHHHhCCcee-cCCCCEEEEEeeeCceEEEEEEEEEecchhHH
Confidence            8889999999999 588888887   677899999995 56889999999999999999999999876543

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=2.8e-36  Score=335.28  Aligned_cols=267  Identities=17%  Similarity=0.212  Sum_probs=208.5

Q ss_pred             ccccccchHHHHHHhHHHHHHHHHHHHHHHHHhhhcch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009792          242 SIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPT-----TIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMAS  316 (525)
Q Consensus       242 ~~~~~~~~~~l~~~l~~p~~ll~~ll~~~~l~~~~~~~-----~~~~~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~  316 (525)
                      .++...|++.+.++++ |+.++++++.+...-..+...     ......+..+..+++++.++++.+.+.+..+++.+.+
T Consensus       416 ~~r~~~~~~~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~  494 (741)
T PRK11465        416 QKRLNGWLSAALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLAS  494 (741)
T ss_pred             HHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456778888888888 777766665444322211111     1223334445444444433333333333334444332


Q ss_pred             h-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCcc
Q 009792          317 Q-----SIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPF  391 (525)
Q Consensus       317 ~-----~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf  391 (525)
                      +     .....+++....+++++++++++++++++++.+|++++++++++|++|+|+|||+|++++|+++|++|+++|||
T Consensus       495 ~~~~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf  574 (741)
T PRK11465        495 DIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGM  574 (741)
T ss_pred             hhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            1     11123456778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHH
Q 009792          392 SLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKS  470 (525)
Q Consensus       392 ~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e  470 (525)
                      ++||||+++|.+|+||+|++|+|++|++||+.++|||+.+.+  +.|||+. .+++.++++++| +|.+++.++++++.+
T Consensus       575 ~vGD~I~v~g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~  651 (741)
T PRK11465        575 NTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVA  651 (741)
T ss_pred             CCCCEEEECCeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999975  9999985 556778999999 699999999988888


Q ss_pred             HHHcCCCcc---cCCCccEEEEEeeCCCeeEEEEEEEEecCCccch
Q 009792          471 MLRSNTKVF---LGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLF  513 (525)
Q Consensus       471 ~L~~~p~i~---~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~ey  513 (525)
                      .+.++|++.   .++ ++.+.+.+++++++.+++++|+++.++|+.
T Consensus       652 el~~dpe~~~~il~~-p~~vgV~~lgdSsi~lrvr~~t~p~~qw~v  696 (741)
T PRK11465        652 ELMENEEIRGLIIGE-PNFAGIVGLTNTAFTLRVSFTTLPLKQWTV  696 (741)
T ss_pred             HhhcCccccccccCC-CCeEEEEEecCceEEEEEEEEECcchHHHH
Confidence            888888741   233 356889999999999999999999888764

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=9.9e-35  Score=335.21  Aligned_cols=219  Identities=21%  Similarity=0.318  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 009792          285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG  364 (525)
Q Consensus       285 ~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~  364 (525)
                      .+.+++.+++++++++++.+++..++++.+.++  .+.+......+.++++++++++++++++..+|++++++.+.+|++
T Consensus       832 tl~~ll~AllIliv~~~l~r~l~~lle~~l~~~--~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~gal  909 (1109)
T PRK10929        832 TLGSVLIAILVFIITTQLVRNLPALLELALLQH--LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAAL  909 (1109)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            366788889999999999999999998877443  223566777899999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCc
Q 009792          365 GVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPW  444 (525)
Q Consensus       365 gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~  444 (525)
                      |+++|||+|++++||+||++|+++|||++||+|+++|..|+|++|++|+|+|+|+||+.++|||+.+.++.|+|||+++.
T Consensus       910 GVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~  989 (1109)
T PRK10929        910 GVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDS  989 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             -eeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCC
Q 009792          445 -RALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV  509 (525)
Q Consensus       445 -rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~  509 (525)
                       +|+.++++++| +|+++++++   +.+.++++|.+. ++|+|.|++.+++++++.++++||+++..
T Consensus       990 ~~Rv~i~VgV~Y~sDie~v~~i---L~eaa~~~~~VL-~~P~P~V~~~~fgdssi~~elr~wv~~~~ 1052 (1109)
T PRK10929        990 VTRVVLTIPAPADANSEEVTEI---LLTAARRCSLVL-DNPAPEVFLVDLQQGIQIFELRIYAAEMG 1052 (1109)
T ss_pred             ceEEEEEEEeCCCCCHHHHHHH---HHHHHHhCcccc-CCCCCEEEEEecCCCceEEEEEEEEcChh
Confidence             68889999999 588888887   667899999995 56899999999999999999999998654

>PRK11281 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=335.36  Aligned_cols=219  Identities=21%  Similarity=0.352  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 009792          285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG  364 (525)
Q Consensus       285 ~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~  364 (525)
                      ++++++.++++++++|++.+++..++++...++.  ..+......+.++++++++++++++++..+|++.+++.+.+|++
T Consensus       835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl--~l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaL  912 (1113)
T PRK11281        835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRL--NLRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAAL  912 (1113)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            6888999999999999999999998887654321  22445566788999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCc
Q 009792          365 GVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPW  444 (525)
Q Consensus       365 gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~  444 (525)
                      |+++|||+|++++||+||++|+++|||++||+|+++|..|+|++|++|+|+|+|+||+.++|||+.+.++.|+|||.++.
T Consensus       913 gVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I~~~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~  992 (1113)
T PRK11281        913 SVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDT  992 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             -eeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCC
Q 009792          445 -RALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMV  509 (525)
Q Consensus       445 -rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~  509 (525)
                       +|+.++++++| +|+++++++   +.+.++++|.+. ++|+|.|++.++++++++++++||++++.
T Consensus       993 ~~Rv~i~vgV~Y~sDi~~v~~i---L~eaa~~~p~Vl-~~P~P~V~~~~fgdssi~~~lr~wv~~~~ 1055 (1113)
T PRK11281        993 VTRVVIKVGVAYGSDLEKVREL---LLQAATENPRVM-KEPEPQVFFLNFGASTLDHELRLYVRELG 1055 (1113)
T ss_pred             ceEEEEEEEeCCCCCHHHHHHH---HHHHHHcCcccc-cCCCCEEEEEeccCceEEEEEEEEEcCHh
Confidence             68889999999 588888877   677899999995 56889999999999999999999999754

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=100.00  E-value=6.7e-33  Score=267.74  Aligned_cols=184  Identities=32%  Similarity=0.564  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEee
Q 009792          332 RISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGL  411 (525)
Q Consensus       332 ~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl  411 (525)
                      +++.++++++++++++..+|.+..++++++|++|+++|||+|++++|++||++|++++||++||||+++|..|+|+||++
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l   81 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEIGGVEGRVEEIGL   81 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEESSS-EEEEEEE-S
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEEEEeehHHHhcCc
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCcEEEEeCcccccCcEEeccC-CCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEE
Q 009792          412 TTTTLLSAEKFPVIVPNSMFSSQVIVNKSR-APWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFL  489 (525)
Q Consensus       412 ~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr-~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v  489 (525)
                      ++|++|++||++++|||+.+.+++|.|+|+ .+.++..+.+++++ +|+++++++.+++.+.++++|.+.. .+.|.+.+
T Consensus        82 ~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~  160 (206)
T PF00924_consen   82 RSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFK-EPEPRVVV  160 (206)
T ss_dssp             SEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-T-TS-EEEEE
T ss_pred             ceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhc-CCCCeEEE
Confidence            999999999999999999999999999999 77888999999999 4779999999999999999998854 46799999


Q ss_pred             EeeCCCeeEEEEEEEEecCCccchhhc
Q 009792          490 SQIESSFAELNVGCNLKQMVKFLFSCF  516 (525)
Q Consensus       490 ~~~~~s~i~i~V~~~~k~~~~~ey~~~  516 (525)
                      .++++++++++++|++++.++.++...
T Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~~~~~  187 (206)
T PF00924_consen  161 DEIGDSSLEFRIRVYVKNQDPEKYWEI  187 (206)
T ss_dssp             EEE-SSSEEEEEEEEEEC---CCHHHH
T ss_pred             ccccCCceEEEEEEEEEeCchhhHHHH
Confidence            999999999999999999555555443

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.6e-31  Score=292.57  Aligned_cols=222  Identities=22%  Similarity=0.351  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Q 009792          286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG  365 (525)
Q Consensus       286 l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~g  365 (525)
                      +..++.+++++++++++.|++.++++..+..+.  ..+......+.+++++++..+++++.++.+|++.+++-..+|++|
T Consensus       558 l~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r~--~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALs  635 (835)
T COG3264         558 LGALLQAVLLFLITYVLTRNLPGWLEVRVLQRL--DLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALS  635 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhh
Confidence            556788889999999999999999986665442  225556678999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCC-c
Q 009792          366 VATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAP-W  444 (525)
Q Consensus       366 vaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~-~  444 (525)
                      +++||+.|++++||+||+.|+++||+||||||++++.+|+|.+|+.|.|+|+|+|++.++|||+.|.++.|.||+.++ .
T Consensus       636 vGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~  715 (835)
T COG3264         636 VGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTT  715 (835)
T ss_pred             hhhchhHHHHHHHhhhhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999885 6


Q ss_pred             eeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCCccch
Q 009792          445 RALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFLF  513 (525)
Q Consensus       445 rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~ey  513 (525)
                      .|+.+++++.| +|++++.++   +.+..++||.+. ++|+|.|.+.+++++++++|+++|+.+......
T Consensus       716 ~R~~i~v~vay~sD~~~V~~~---Ll~~A~~~p~Vl-~~P~P~v~f~~fg~s~L~fELr~~v~~~~~~~~  781 (835)
T COG3264         716 TRLVIPVGVAYGSDPELVREL---LLEAAREHPRVL-KDPAPEVFFTAFGASSLDFELRVYVAELGDRMP  781 (835)
T ss_pred             EEEEEEecccCCCCHHHHHHH---HHHHHHhCCCcc-CCCCCeeEeecccccceeEEEEEEeeccccccc
Confidence            68888899889 699998888   778899999995 679999999999999999999999998876554

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=99.98  E-value=4.9e-30  Score=261.85  Aligned_cols=181  Identities=28%  Similarity=0.403  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeC-CeeEEEE
Q 009792          329 ALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAG-SVEGQVV  407 (525)
Q Consensus       329 ~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~-g~~G~Ve  407 (525)
                      .+..+.++++++++++.++..+|++++++++++|++|+|+|||+|++++|+++|+++++++||++||||+++ +.+|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i~~~~~G~V~  165 (316)
T COG0668          86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEIGSGVEGTVE  165 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEECCCceEEEE
Confidence            788999999999999999999999999999999999999999999999999999999999999999999999 7999999


Q ss_pred             EEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccE
Q 009792          408 EMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPY  486 (525)
Q Consensus       408 eIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~  486 (525)
                      +|++++|++|++||++++|||+.+.++.|+|+++++.+++.++++++| +|.++++++..++.+.+..++.   .+|+|.
T Consensus       166 ~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~  242 (316)
T COG0668         166 DIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILKEVLEELPEVLK---IEPEPV  242 (316)
T ss_pred             EEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHHHHHHhcccccc---cCCCcE
Confidence            999999999999999999999999999999999998888989999999 6889999986555554444443   247899


Q ss_pred             EEEEeeCCCeeEEEEEEEEecCCccc
Q 009792          487 CFLSQIESSFAELNVGCNLKQMVKFL  512 (525)
Q Consensus       487 V~v~~~~~s~i~i~V~~~~k~~~~~e  512 (525)
                      +++.+++++++.+++++|+++.+++.
T Consensus       243 v~~~~~~~~~~~i~v~~~t~~~~~~~  268 (316)
T COG0668         243 IGVSELGDSGINIRVRFWTNPEDLWS  268 (316)
T ss_pred             EEEeeccCCceEEEEEEEecchhHHH
Confidence            99999999999999999999877443

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=99.67  E-value=1.2e-16  Score=177.67  Aligned_cols=193  Identities=19%  Similarity=0.273  Sum_probs=169.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhh-eeeeecCccccCceeeeCC
Q 009792          323 DREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSG-LSMQFSKPFSLGDTIKAGS  401 (525)
Q Consensus       323 ~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aG-i~I~~~~pf~IGD~I~i~g  401 (525)
                      .++.+.-+.+++.+++.++++++.+-.+|++...+++..+-.-+++.|.+.+++++++.+ ++++..+||.+||+|.+||
T Consensus       476 ~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg  555 (714)
T KOG4629|consen  476 TKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDG  555 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEec
Confidence            345667788889988888888888889999999998888877788899999999999975 8889999999999999999


Q ss_pred             eeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCccc
Q 009792          402 VEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFL  480 (525)
Q Consensus       402 ~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~  480 (525)
                      +.-.|+++++.+|.+..+||+.+++||+.+.+++|.|+.|++.+...+++.+.. ++.+|++.+.+.+.++++++|....
T Consensus       556 ~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~  635 (714)
T KOG4629|consen  556 VNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYY  635 (714)
T ss_pred             eEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccc
Confidence            999999999999999999999999999999999999999998887778888887 7999999999999999999998853


Q ss_pred             CCCccEEEEEeeCC-CeeEEEEEEEEecCCccchhhcc
Q 009792          481 GKEAPYCFLSQIES-SFAELNVGCNLKQMVKFLFSCFN  517 (525)
Q Consensus       481 ~~~~p~V~v~~~~~-s~i~i~V~~~~k~~~~~ey~~~q  517 (525)
                        |.+.+.+.++.+ +.+.+.++..-+...|+.-++..
T Consensus       636 --p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~  671 (714)
T KOG4629|consen  636 --PDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWS  671 (714)
T ss_pred             --cchhhHHHhhhhcCcceEEEEEEeecchhhHHHHHh
Confidence              678899998887 67777777776666666655443

>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence

Probab=87.80  E-value=1  Score=34.41  Aligned_cols=37  Identities=16%  Similarity=0.434  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009792          283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSI  319 (525)
Q Consensus       283 ~~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~  319 (525)
                      ..|+|+++.+++++.++|++.+++.+++.+.+.+.+.
T Consensus        12 i~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~~~   48 (53)
T PF05552_consen   12 IAYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKRGV   48 (53)
T ss_dssp             -GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999887654

It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.

>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1

Probab=86.31  E-value=45  Score=35.19  Aligned_cols=77  Identities=10%  Similarity=0.128  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC--cchHHHHHHHH
Q 009792          289 AWRGAVILSFVWFLHRWKTNVFTRAMASQS----IAGLDREKMLALDRISSVGLFVIGLMALAEACG--VAVQSILTVGG  362 (525)
Q Consensus       289 il~~llil~i~~~l~r~~~~~~~~~~~~~~----~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lG--v~~~~lLa~lG  362 (525)
                      +..++....+.|++..+...+.    ..+.    +-+.+++....+++..+.+++++..++....+.  .+....-.++|
T Consensus        84 l~~~l~~~a~~~~~~~~~~~l~----rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LG  159 (340)
T PF12794_consen   84 LGAALLAMALFWLVFEFFRRLL----RPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLG  159 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----CCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHH
Confidence            3344444555555555444332    2221    123356677777777777777766665555553  33333344455


Q ss_pred             HHHHHHH
Q 009792          363 IGGVATA  369 (525)
Q Consensus       363 i~gvaig  369 (525)
                      -++..++
T Consensus       160 rl~~ii~  166 (340)
T PF12794_consen  160 RLAFIIL  166 (340)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK11281 hypothetical protein; Provisional

Probab=84.39  E-value=88  Score=38.43  Aligned_cols=28  Identities=7%  Similarity=-0.027  Sum_probs=14.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009792          323 DREKMLALDRISSVGLFVIGLMALAEAC  350 (525)
Q Consensus       323 ~~~~~~~l~~i~~iii~ii~iiiiL~~l  350 (525)
                      .++....+++-.+.+++++..+++...+
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~pl~~~~~~  639 (1113)
T PRK11281        612 PKEQVSHFRRQIVRLSLALLPLLFWSVV  639 (1113)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666555555555444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	525
2oau_A	306	Mechanosensitive Channel Of Small Conductance (Mscs		6e-11
4age_A	286	Mtssl Spin Labeled D67c Mutant Of Mscs In The Open		1e-10
4agf_A	286	Mtssl Spin Labeled L124c Mutant Of Mscs In The Open		1e-10
2vv5_A	286	The Open Structure Of Mscs Length = 286		2e-10
3udc_A	285	Crystal Structure Of A Membrane Protein Length = 28		3e-07
3t9n_A	282	Crystal Structure Of A Membrane Protein Length = 28		3e-07
4hw9_A	309	Crystal Structure Of Helicobacter Pylori Mscs (clos		4e-04

>pdb|2OAU|A Chain A, Mechanosensitive Channel Of Small Conductance (Mscs) Length = 306

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
            + R  +N   R M S+ I     + + AL R    G+    L+A     GV   S++ V
Sbjct: 63  IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 119
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
            G  G+A   A +  L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+
Sbjct: 120 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 179
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
              +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++ 
Sbjct: 180 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 236
Query: 480 LGKE 483
             +E
Sbjct: 237 KDRE 240

>pdb|4AGE|A Chain A, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form Length = 286

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
            + R  +N   R M S+ I   D      L  +   G+    L+A     GV   S++ V
Sbjct: 43  IIARMISNAVNRLMISRKI---DATVACFLSALVRYGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
            G  G+A   A +  L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
              +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++ 
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216
Query: 480 LGKE 483
             +E
Sbjct: 217 KDRE 220

>pdb|4AGF|A Chain A, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form Length = 286

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
            + R  +N   R M S+ I     + + AL R    G+    L+A     GV   S++ V
Sbjct: 43  IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
            G  G+A   A +  L N+ +G+     +PF  G+ +  G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLCVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
              +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++ 
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216
Query: 480 LGKE 483
             +E
Sbjct: 217 KDRE 220

>pdb|2VV5|A Chain A, The Open Structure Of Mscs Length = 286

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
            + R  +N   R M S+ I     + + AL R    G+    L+A     GV   S++ V
Sbjct: 43  IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAE 420
            G  G+    A +  L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+
Sbjct: 100 LGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159
Query: 421 KFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKVPQISDDVKSMLRSNTKVF 479
              +++PN    +  I+N SR P R     I +  D D+D+V QI   + ++++S  ++ 
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL 216
Query: 480 LGKE 483
             +E
Sbjct: 217 KDRE 220

>pdb|3UDC|A Chain A, Crystal Structure Of A Membrane Protein Length = 285

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 352 VAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGL 411
           + + S+L V GIG +A  F +++++ +++SG  + F   FS+GD +    + G V E+GL
Sbjct: 90  IDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGL 149
Query: 412 TTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKV----PQISD 466
             T +        I+PN     +++ N ++    A V+ I   ID D+DK+     +I +
Sbjct: 150 RVTKIRGFSDGLHIIPNG--EIKMVTNLTKDSMMA-VVNIAFPIDEDVDKIIEGLQEICE 206
Query: 467 DVKS 470
           +VK 
Sbjct: 207 EVKK 210

>pdb|3T9N|A Chain A, Crystal Structure Of A Membrane Protein Length = 282

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 352 VAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGL 411
           + + S+L V GIG +A  F +++++ +++SG  + F   FS+GD +    + G V E+GL
Sbjct: 90  IDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGL 149
Query: 412 TTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQID-DLDKV----PQISD 466
             T +        I+PN     +++ N ++    A V+ I   ID D+DK+     +I +
Sbjct: 150 RVTKIRGFSDGLHIIPNG--EIKMVTNLTKDSMMA-VVNIAFPIDEDVDKIIEGLQEICE 206
Query: 467 DVKS 470
           +VK 
Sbjct: 207 EVKK 210

>pdb|4HW9|A Chain A, Crystal Structure Of Helicobacter Pylori Mscs (closed State) Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 351 GVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMG 410
           GV   SI+TV G  G+A A A +D L ++  G+ +    PF  GD I+   +EG+V  + 
Sbjct: 103 GVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALN 162
Query: 411 LTTTTLLSAEKFPVIVPN 428
              T+L   +    ++PN
Sbjct: 163 FFNTSLRLHDGRLAVLPN 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	3e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score =  121 bits (306), Expect = 3e-31
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 16/232 (6%)

Query: 275 MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRIS 334
           +VA   +   Y         I+     + R  +N   R M S+ I   D      L  + 
Sbjct: 17  LVANQALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---DATVADFLSALV 73

Query: 335 SVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLG 394
             G+    L+A     GV   S++ V G  G+    A +  L N+ +G+ +   +PF  G
Sbjct: 74  RYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAG 133

Query: 395 DTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQ 454
           + +  G V G V+ + + +TT+ +A+   +++PN    +  I+N SR P R    R    
Sbjct: 134 EYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVR----RNEFI 189

Query: 455 I-----DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNV 501
           I      D+D+V QI   + ++++S  ++ L        L+++ +S     V
Sbjct: 190 IGVAYDSDIDQVKQI---LTNIIQSEDRI-LKDREMTVRLNELGASSINFVV 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 48/332 (14%), Positives = 92/332 (27%), Gaps = 104/332 (31%)

Query: 17  IYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGF 76
           +Y   + RL + +  + K      Q ++KL  A+         L  A N     + + G 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------LELRPAKN-----VLIDGV 158

Query: 77  APIGKT--------------------------QCHKANAV-----SSYLPTSKNFCSRRL 105
              GKT                           C+    V             N+ SR  
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 106 ATFASISPFLGHRSY-SSFFGSKTDKSTEI--DVPAASSGSETDVSNHGIVGSDSFD--- 159
            +          ++       SK  ++  +             +V N      ++F+   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------NVQNAKAW--NAFNLSC 266

Query: 160 KI----KDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA- 214
           KI    +   K V D +S                    H  L    + ++     ++L  
Sbjct: 267 KILLTTRF--KQVTDFLSAATTT---------------HISLDHHSMTLTPDEVKSLLLK 309

Query: 215 WVVM-----PRVLRRFHKYAIQGPVSLLSGGLSI----EQVPYEK------SFWGALEDP 259
           ++       PR +   +   +      +  GL+     + V  +K      S    LE  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 260 -VRYLITFMAFVQIGMMVAPTTIASQYLAQAW 290
             R +     F ++ +      I +  L+  W
Sbjct: 370 EYRKM-----FDRLSVFPPSAHIPTILLSLIW 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	100.0
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	100.0

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=100.00  E-value=7.4e-40  Score=332.03  Aligned_cols=222  Identities=23%  Similarity=0.328  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 009792          284 QYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGI  363 (525)
Q Consensus       284 ~~l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi  363 (525)
                      .++++++.++++++++|++.+++.+++.+++.+..   .+.+....+.++++++++++++++++..+|++++++++++|+
T Consensus        26 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~  102 (286)
T 2vv5_A           26 SYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA  102 (286)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            34677888899999999999999999888776543   366777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCC
Q 009792          364 GGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAP  443 (525)
Q Consensus       364 ~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~  443 (525)
                      +|+|+|||+|++++|++||++|++++||++||||+++|.+|+|+||++|+|++|++||+.++|||+.+.+++|+|||+++
T Consensus       103 ~g~aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i~g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~  182 (286)
T 2vv5_A          103 AGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP  182 (286)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEECCEEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCCccc
Q 009792          444 WRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKFL  512 (525)
Q Consensus       444 ~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~e  512 (525)
                      .+|++++++++| +|+++++++   +++.+++||.+. ++|+|.|++.+++++++++++++|+++.++++
T Consensus       183 ~~r~~~~v~v~y~~d~~~v~~~---l~~~~~~~~~vl-~~p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~  248 (286)
T 2vv5_A          183 VRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL-KDREMTVRLNELGASSINFVVRVWSNSGDLQN  248 (286)
T ss_dssp             EEEEEEEEEECTTSCHHHHHHH---HHHHHHHCTTBC-TTSCEEEEEEEECSSSEEEEEEEEEETTTHHH
T ss_pred             cEEEEEEEEEcCCCCHHHHHHH---HHHHHHhCcccc-cCCCCEEEEEEecCCeEEEEEEEEEccchHHH
Confidence            888989999999 588888776   778899999985 56889999999999999999999999865443

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=100.00  E-value=1.2e-34  Score=293.75  Aligned_cols=184  Identities=19%  Similarity=0.330  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhHHHHhhHhhheeeeecCccccCceeeeCCeeE
Q 009792          325 EKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKAGSVEG  404 (525)
Q Consensus       325 ~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~gvaigfaaqd~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G  404 (525)
                      +....+.++++++++++++++++..+|++++++++++|++|+|+|||+|++++|++||++|+++|||++||||+++|.+|
T Consensus        63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i~~~~G  142 (285)
T 3udc_A           63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISG  142 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEECCEEE
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeEEEEEEecCCcEEEEeCcccccCcEEeccCCCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCC
Q 009792          405 QVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKSRAPWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKE  483 (525)
Q Consensus       405 ~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~Sr~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~  483 (525)
                      +|+||++|+|++|++||+.++|||+.+.  .+.|||+... +..+++.++| +|.+++.++.+++.+.+.+++... .++
T Consensus       143 ~V~~I~l~~T~i~t~d~~~v~iPN~~l~--~i~N~s~~~~-~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~~-~~~  218 (285)
T 3udc_A          143 TVEEIGLRVTKIRGFSDGLHIIPNGEIK--MVTNLTKDSM-MAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDDL-IEG  218 (285)
T ss_dssp             EEEEECSSEEEEEETTTEEEEEEGGGCS--CEEECSSSCE-EEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSSB-SSC
T ss_pred             EEEEeeeeEEEEecCCCCEEEecccccc--cccccCCCCc-eEEEEEeeecCCCHHHHHHHHHHHHHHHHhccccc-ccC
Confidence            9999999999999999999999999993  5999998654 4557889998 588998888766655444433332 345


Q ss_pred             ccEEEEEeeCCCeeEEEEEEEEecCCccc
Q 009792          484 APYCFLSQIESSFAELNVGCNLKQMVKFL  512 (525)
Q Consensus       484 ~p~V~v~~~~~s~i~i~V~~~~k~~~~~e  512 (525)
                      +|.+.+.+++++++++++++|+++.++++
T Consensus       219 ~~~v~~~~~~~s~i~~~v~~~~~~~~~~~  247 (285)
T 3udc_A          219 PTVLGITDMQDSKLVIMVYAKTQPMQKWA  247 (285)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEESTTCHHH
T ss_pred             cccccccccCCCEEEEEEEEEECcchHHH
Confidence            68899999999999999999998876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	9e-15
d2vv5a3	86	f.34.1.1 (A:27-112) Mechanosensitive channel prote	4e-08

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 66.7 bits (163), Expect = 9e-15
 Identities = 18/65 (27%), Positives = 37/65 (56%)

Query: 376 LGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQV 435
           L N+ +G+ +   +PF  G+ +  G V G V+ + + +TT+ +A+   +++PN    +  
Sbjct: 3   LSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGN 62

Query: 436 IVNKS 440
           I+N S
Sbjct: 63  IINFS 67

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Length = 86

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLM 344
           Y         I+     + R  +N   R M S+    +D      L  +   G+    L+
Sbjct: 1   YAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLI 57

Query: 345 ALAEACGVAVQSILTVGGIGGVATAFA 371
           A     GV   S++ V G  G+    A
Sbjct: 58  AALGRVGVQTASVIAVLGAAGLVVGLA 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.8
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	99.11
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	98.5

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=9.7e-21  Score=149.39  Aligned_cols=66  Identities=27%  Similarity=0.495  Sum_probs=64.9

Q ss_pred             HHhhHhhheeeeecCccccCceeeeCCeeEEEEEEeeEEEEEEecCCcEEEEeCcccccCcEEecc
Q 009792          375 VLGNVLSGLSMQFSKPFSLGDTIKAGSVEGQVVEMGLTTTTLLSAEKFPVIVPNSMFSSQVIVNKS  440 (525)
Q Consensus       375 ~l~N~~aGi~I~~~~pf~IGD~I~i~g~~G~VeeIgl~sT~lrt~Dg~~v~IPNs~l~s~~V~N~S  440 (525)
                      +++|++||++|++++||++||||+++|..|+|+||+|++|++|++||+.++|||+.+.+++|.|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEECCEEEEEEEEeceEEEEEccCCCEEEEECHHHcCCccEECc
Confidence            689999999999999999999999999999999999999999999999999999999999999997

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.5e-10  Score=94.27  Aligned_cols=85  Identities=22%  Similarity=0.288  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Q 009792          286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG  365 (525)
Q Consensus       286 l~~il~~llil~i~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~iii~ii~iiiiL~~lGv~~~~lLa~lGi~g  365 (525)
                      .++++.+++++.++|++.+++.+.+++...+++.   |++..+.+.+++++++++++++++++.+|+|++++++++|++|
T Consensus         2 ~~~il~~l~il~i~~~i~~~i~~~~~~~~~~~~~---~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~g   78 (86)
T d2vv5a3           2 AVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAG   78 (86)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3567888889999999999999999988776543   7778889999999999999999999999999999999999999


Q ss_pred             HHHHHHhH
Q 009792          366 VATAFASR  373 (525)
Q Consensus       366 vaigfaaq  373 (525)
                      +++|||+|
T Consensus        79 vaiGfa~Q   86 (86)
T d2vv5a3          79 LVVGLALQ   86 (86)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhcC
Confidence            99999998

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.7e-07  Score=77.42  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=59.0

Q ss_pred             CCCceeEEEEEeeec-CCchhHHHHHHHHHHHHHcCCCcccCCCccEEEEEeeCCCeeEEEEEEEEecCCcc
Q 009792          441 RAPWRALVIRIPMQI-DDLDKVPQISDDVKSMLRSNTKVFLGKEAPYCFLSQIESSFAELNVGCNLKQMVKF  511 (525)
Q Consensus       441 r~~~rri~~~I~I~~-~d~ekv~~I~~~i~e~L~~~p~i~~~~~~p~V~v~~~~~s~i~i~V~~~~k~~~~~  511 (525)
                      |++.||+.++++++| +|+++++++   +++.++++|.+. ++|+|.|.+.+++++++.+++++|+++.+++
T Consensus         1 R~~~RR~~~~i~v~y~~d~~~v~~i---l~~~~~~~~~v~-~~p~p~v~~~~~~~s~i~~~v~~w~~~~~~~   68 (101)
T d2vv5a2           1 REPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRIL-KDREMTVRLNELGASSINFVVRVWSNSGDLQ   68 (101)
T ss_dssp             SSSEEEEEEEEEECTTSCHHHHHHH---HHHHHHHCTTBC-TTSCEEEEEEEECSSSEEEEEEEEEETTTHH
T ss_pred             CCCceEEEEEEEEccCCCHHHHHHH---HHHHHHhChhhh-cccCchhhcccCCCceEEEEEEEEecchHHH
Confidence            457899999999999 688888888   677889999995 5688999999999999999999999987654