Citrus Sinensis ID: 009912

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEQRITKSSV
cccccccccEEEcccccccccEEEEEcccEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEEEcccEEEEccccHHHHHHHHHHHHHHccccccccccEEccEEEEEEEEEccEEEEEEccEEEEEEEHHHHHccccccccEEEEEEEccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHcccccccccEEEEEcccEEcccccEEEEEEcccEEEEEEccccEEEEcccEEEEEEccccccccEEEEEEcccccccccccccEEEEEEccccEEEEcccccHHHHHHHHcccccccccccHHHHHHHHHHHHcccEEccccccccccccccEEEEEEcccEEEEEcccEEEEEEcccEEEEcccEEEEEEEEEccccccEEEEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHcccEEEEccccccccHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEcccEEEEccccccccEEEEccccEEEEccccccEEEEcHHHHcEEEEEEEccccEEEEEEEccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEcccEEEEEEccccEEEEEHHHccccccccccEEEEEEEcccccccccccEEEEEEEEEccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccEEEEcccccEEEEEcccEEEEEcccEcEEEEccHEEEEEEcccccccEEEEEEEcccccccccccccEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEccccEEccccccEEEEEEEcccccEEEcccEEEEEccccEEEEcccEEEEEEEEEccccccccEEEEEEEEEcccEEEEccccHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
mtdgpsfnnislggrggtnpgqlkiysgkiswkklgggkavevdkvdiagvtwmkvprtnqlgvrtkdglyykftgfrdqdvaTLTNFfqsnfgispeekqlsvsgrnwgevdlngnMLTFMVGQKQAFEVSLADVSQtqlqgkndvILEFHvddttganekDSLMEISFhipnsntqfvgdenhppaqvfrDKIMsmadvgaggeeAVVTFEGIailtprgrySVELHLSFLRLQGQANDFKIQYSSVVRLfllpksnqphtfvvvtldppirkgqtlyphIVLQFETDYVVQSELLMSEELLNTkykdklepsykGLIHEVFTTILRGlsgakitkpgkfrsaqdgyavksslkaedgvlypleksffflpkpptlilheeidyveferhaaggsnmhYFDLLIRLKTEQEHLFRNIQrneyhnlfdfisgkglkimnlgdmkttDGVAAVLqeddddavdphlerikneaggdesdeedsdfvadkddggsptddsgeedsdasesggekeqritkssv
mtdgpsfnnislggrggtnpgqLKIYSGKISWKKLGGGKAVEVDKVDiagvtwmkvprtnqlgvrtkdGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLsgakitkpgkfrsaqdgyAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLErikneaggdesdeedsdfvadkddggsptddsgeedsdasesggekeqritkssv
MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNeaggdesdeedsdFVADKDDGGSPTddsgeedsdasesggeKEQRITKSSV
*********************QLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTT********MEISFHI*****************VFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAV*********************************************************************
*TDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHI*****************VFRDKIMSMAD*GAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLM***************SYKGLIHEVFTTILRGLSGAK***************VKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLK*************************************************************************************
MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKN***************************************************
***GPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNT*****ENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQ****DAVDPHLERIK****************************************************
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MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEQRITKSSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
O04235 642 FACT complex subunit SSRP N/A no 0.980 0.797 0.855 0.0
Q39601 639 FACT complex subunit SSRP N/A no 0.982 0.802 0.857 0.0
Q9LGR0 641 FACT complex subunit SSRP yes no 0.984 0.801 0.776 0.0
Q05153 646 FACT complex subunit SSRP yes no 0.994 0.803 0.800 0.0
Q9LEF5 639 FACT complex subunit SSRP N/A no 0.977 0.798 0.757 0.0
Q65WY8 640 FACT complex subunit SSRP no no 0.969 0.790 0.749 0.0
Q04678 706 FACT complex subunit SSRP yes no 0.938 0.694 0.354 7e-87
Q9W602 693 FACT complex subunit SSRP N/A no 0.915 0.689 0.364 8e-87
Q08945 709 FACT complex subunit SSRP yes no 0.921 0.678 0.348 2e-84
Q04931 709 FACT complex subunit SSRP yes no 0.921 0.678 0.350 3e-84
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/513 (85%), Positives = 472/513 (92%), Gaps = 1/513 (0%)

Query: 1   MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
           MTDG  FNNI+LG RGGTNPGQ+KIYSG I WK+ GGGK ++VDK DI GVTWMKVP+TN
Sbjct: 1   MTDGHLFNNITLGXRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTN 60

Query: 61  QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
           QLGV+ KDGL YKFTGFRDQDV +LTNFFQ+ FGI+ EEKQLSV+GRNWGEVDLNGNML 
Sbjct: 61  QLGVQIKDGLLYKFTGFRDQDVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLA 120

Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
           FMVG KQAFEVSLADVSQT LQGKNDVILEFHVDDTTGANEKDSLME+SFHIP+SNTQFV
Sbjct: 121 FMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFV 180

Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
           GDEN P AQVFRDKIMSMADVG GGE+AVVTF+GIAILTPRGRYSVELHLSFLRLQGQAN
Sbjct: 181 GDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAN 240

Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
           DFKIQYSSVVRLFLLPKSNQPHTFV+++LDPPIRKGQTLYPHIV+QFETD VV SEL +S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDTVVDSELAIS 300

Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
           E+L N+KYKDKLE SYKGLIHEVFTT+LRGLSG K+TKPG FRS QDGYAVKSSLKAEDG
Sbjct: 301 EDLYNSKYKDKLELSYKGLIHEVFTTVLRGLSGGKVTKPGNFRSCQDGYAVKSSLKAEDG 360

Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
           +LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLK+EQEHLFRNIQ
Sbjct: 361 ILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQ 420

Query: 421 RNEYHNLFDFISGKGLKIMNLGD-MKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESD 479
           RNEYHNL+ FIS KGLKIMN+ D  +   GVA VL+ DDDDAVDPHLERI+NEAGGDESD
Sbjct: 421 RNEYHNLYGFISSKGLKIMNIADAQQAVGGVAKVLENDDDDAVDPHLERIRNEAGGDESD 480

Query: 480 EEDSDFVADKDDGGSPTDDSGEEDSDASESGGE 512
           EEDSDFV DKDDGGSPTDDSG + SDAS+SGGE
Sbjct: 481 EEDSDFVIDKDDGGSPTDDSGADVSDASQSGGE 513
Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. Binds specifically to double-stranded DNA.
Vicia faba (taxid: 3906)
>sp|Q39601|SSRP1_CATRO FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1 Back     alignment and function description
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1 Back     alignment and function description
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1 Back     alignment and function description
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1 Back     alignment and function description
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1 Back     alignment and function description
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
255552860 640 structure-specific recognition protein, 0.998 0.814 0.898 0.0
225452706 644 PREDICTED: FACT complex subunit SSRP1 [V 0.978 0.793 0.921 0.0
449459450 642 PREDICTED: FACT complex subunit SSRP1-li 0.950 0.772 0.907 0.0
147866286 644 hypothetical protein VITISV_042446 [Viti 0.978 0.793 0.921 0.0
356496334 640 PREDICTED: FACT complex subunit SSRP1-li 0.998 0.814 0.867 0.0
75218951 642 RecName: Full=FACT complex subunit SSRP1 0.980 0.797 0.855 0.0
356506416614 PREDICTED: FACT complex subunit SSRP1-li 0.998 0.848 0.871 0.0
2495256 639 RecName: Full=FACT complex subunit SSRP1 0.982 0.802 0.857 0.0
224141351610 high mobility group family [Populus tric 0.919 0.786 0.889 0.0
357492685 648 FACT complex subunit SSRP1 [Medicago tru 0.984 0.793 0.857 0.0
>gi|255552860|ref|XP_002517473.1| structure-specific recognition protein, putative [Ricinus communis] gi|223543484|gb|EEF45015.1| structure-specific recognition protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/522 (89%), Positives = 492/522 (94%), Gaps = 1/522 (0%)

Query: 1   MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
           MTDG  FNNISLGGRGGTNPGQLK++SG I WKK GGGKAVEVDK DIAG+TWMKVPRTN
Sbjct: 1   MTDGHLFNNISLGGRGGTNPGQLKLHSGGILWKKQGGGKAVEVDKADIAGLTWMKVPRTN 60

Query: 61  QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
           QLGVR KDGL+YKFTGFRDQD A LT+FFQSN GI+ EEKQLSVSGRNWGEVDLNGNMLT
Sbjct: 61  QLGVRIKDGLFYKFTGFRDQDHANLTSFFQSNCGITLEEKQLSVSGRNWGEVDLNGNMLT 120

Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
           F+VG KQAFEVSLADVSQTQ+QGKNDVILEFHVDDTTGANEKDSLMEISFHIP++NTQFV
Sbjct: 121 FLVGSKQAFEVSLADVSQTQMQGKNDVILEFHVDDTTGANEKDSLMEISFHIPSNNTQFV 180

Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
           GDENHPPAQVFRDKIMSMADV  GGEEAVVTF+G+AILTPRGRYSVELHLSFLRLQGQAN
Sbjct: 181 GDENHPPAQVFRDKIMSMADVNPGGEEAVVTFDGVAILTPRGRYSVELHLSFLRLQGQAN 240

Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
           DFKIQYSSVVRLFLLPKSNQPHTFV+VTLDPPIRKGQTLYPHIVLQF+TD+VVQS L M+
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVIVTLDPPIRKGQTLYPHIVLQFDTDFVVQSTLTMN 300

Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
           E+LL+TKYKDKLEPSYKGLIHEVFTTILRGLSGAK+TKPGKFRS QDGYAVKSSLKAEDG
Sbjct: 301 EDLLSTKYKDKLEPSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDG 360

Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
           +LYPLEKSFFFLPKPPTLILHEEIDYVEFERHA G SNMHYFDLLIRLKTEQEHLFRNIQ
Sbjct: 361 LLYPLEKSFFFLPKPPTLILHEEIDYVEFERHATGSSNMHYFDLLIRLKTEQEHLFRNIQ 420

Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
           RNEYHNLFDFISGKGLKIMNLGDMKTT+GVAAVLQ DDDDAVDPHLERIKNEA GDESDE
Sbjct: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTNGVAAVLQNDDDDAVDPHLERIKNEA-GDESDE 479

Query: 481 EDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEQRITKSSV 522
           EDSDFVADKDDGGSPTDDSGEEDSD S SG   E+ + K S 
Sbjct: 480 EDSDFVADKDDGGSPTDDSGEEDSDGSLSGDGTEKHVRKEST 521

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452706|ref|XP_002282538.1| PREDICTED: FACT complex subunit SSRP1 [Vitis vinifera] gi|296082859|emb|CBI22160.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459450|ref|XP_004147459.1| PREDICTED: FACT complex subunit SSRP1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147866286|emb|CAN79926.1| hypothetical protein VITISV_042446 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496334|ref|XP_003517023.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max] Back     alignment and taxonomy information
>gi|75218951|sp|O04235.1|SSRP1_VICFA RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 gi|2104679|emb|CAA66480.1| transcription factor [Vicia faba var. minor] Back     alignment and taxonomy information
>gi|356506416|ref|XP_003521979.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max] Back     alignment and taxonomy information
>gi|2495256|sp|Q39601.1|SSRP1_CATRO RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 gi|433872|emb|CAA82251.1| HMG protein [Catharanthus roseus] Back     alignment and taxonomy information
>gi|224141351|ref|XP_002324036.1| high mobility group family [Populus trichocarpa] gi|222867038|gb|EEF04169.1| high mobility group family [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357492685|ref|XP_003616631.1| FACT complex subunit SSRP1 [Medicago truncatula] gi|355517966|gb|AES99589.1| FACT complex subunit SSRP1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
TAIR|locus:2098413 646 HMG "high mobility group" [Ara 0.950 0.767 0.802 6.6e-216
DICTYBASE|DDB_G0290331527 ssrp1 "FACT complex subunit SS 0.528 0.523 0.419 2.2e-82
ZFIN|ZDB-GENE-031118-9 705 ssrp1a "structure specific rec 0.923 0.683 0.353 4.2e-79
UNIPROTKB|Q9W602 693 ssrp1 "FACT complex subunit SS 0.875 0.659 0.372 1.8e-78
ZFIN|ZDB-GENE-041008-209 703 ssrp1b "structure specific rec 0.877 0.651 0.351 2.1e-77
UNIPROTKB|B6ZLK1 706 SSRP1 "Structure-specific reco 0.869 0.643 0.359 4.3e-77
UNIPROTKB|Q04678 706 SSRP1 "FACT complex subunit SS 0.869 0.643 0.359 4.3e-77
UNIPROTKB|F6QYV9 709 SSRP1 "Uncharacterized protein 0.875 0.644 0.351 3.1e-76
UNIPROTKB|F1Q2J2 710 SSRP1 "Uncharacterized protein 0.875 0.643 0.351 3.9e-76
UNIPROTKB|Q08945 709 SSRP1 "FACT complex subunit SS 0.875 0.644 0.351 3.9e-76
TAIR|locus:2098413 HMG "high mobility group" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2086 (739.4 bits), Expect = 6.6e-216, P = 6.6e-216
 Identities = 399/497 (80%), Positives = 438/497 (88%)

Query:     1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
             M DG SFNNISL GRGG NPG LKI SG I WKK GGGKAVEVD+ DI  V+W KV ++N
Sbjct:     1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60

Query:    61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
             QLGV+TKDGLYYKF GFRDQDV +L++FFQS++G +P+EKQLSVSGRNWGEVDL+GN LT
Sbjct:    61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120

Query:   121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
             F+VG KQAFEVSLADVSQTQLQGKNDV LEFHVDDT GANEKDSLMEISFHIPNSNTQFV
Sbjct:   121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV 180

Query:   181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
             GDEN PP+QVF D I++MADV  G E+AVVTFE IAILTPRGRY+VELHLSFLRLQGQAN
Sbjct:   181 GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN 240

Query:   241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
             DFKIQYSSVVRLFLLPKSNQPHTFVV++LDPPIRKGQT+YPHIV+QFETD VV+SEL +S
Sbjct:   241 DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS 300

Query:   301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
             +EL+NTK+KDKLE SYKGLIHEVFTT+LR LSGAKITKPGKFRS+QDG+AVKSSLKAEDG
Sbjct:   301 DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG 360

Query:   361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
             VLYPLEK FFFLPKPPTLILH+EIDYVEFERHAAGG+NMHYFDLLIRLKT+ EHLFRNIQ
Sbjct:   361 VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQ 420

Query:   421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE-DDDDAVDPHLERIKNXXXXXXXX 479
             RNEYHNL+ FIS KGLKIMNLG   T DGVAAVL + DDDDAVDPHL RI+N        
Sbjct:   421 RNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDE 480

Query:   480 XXXXXFVADKDDGGSPT 496
                   + + DDGGSPT
Sbjct:   481 EDEDFVMGEDDDGGSPT 497
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0035101 "FACT complex" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
DICTYBASE|DDB_G0290331 ssrp1 "FACT complex subunit SSRP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-9 ssrp1a "structure specific recognition protein 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9W602 ssrp1 "FACT complex subunit SSRP1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-209 ssrp1b "structure specific recognition protein 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B6ZLK1 SSRP1 "Structure-specific recognition protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q04678 SSRP1 "FACT complex subunit SSRP1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F6QYV9 SSRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2J2 SSRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q08945 SSRP1 "FACT complex subunit SSRP1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54G78SSRP1_DICDINo assigned EC number0.37620.84290.8349yesno
Q05153SSRP1_ARATHNo assigned EC number0.80070.99420.8034yesno
Q6FKI2POB3_CANGANo assigned EC number0.30880.90610.8710yesno
O94529POB3_SCHPONo assigned EC number0.33390.95400.9726yesno
Q9LEF5SSRP1_MAIZENo assigned EC number0.75720.97700.7981N/Ano
Q39601SSRP1_CATRONo assigned EC number0.85760.98270.8028N/Ano
O04235SSRP1_VICFANo assigned EC number0.85570.98080.7975N/Ano
Q04636POB3_YEASTNo assigned EC number0.30120.93670.8858yesno
Q4WGK6POB3_ASPFUNo assigned EC number0.32750.98270.8952yesno
Q9LGR0SSP1A_ORYSJNo assigned EC number0.77600.98460.8018yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
pfam03531213 pfam03531, SSrecog, Structure-specific recognition 1e-117
COG5165508 COG5165, POB3, Nucleosome-binding factor SPN, POB3 1e-104
cd13230137 cd13230, PH1_SSRP1-like, Structure Specific Recogn 2e-68
cd13231100 cd13231, PH2_SSRP1-like, Structure Specific Recogn 2e-46
pfam0851293 pfam08512, Rtt106, Histone chaperone Rttp106-like 1e-24
>gnl|CDD|202677 pfam03531, SSrecog, Structure-specific recognition protein (SSRP1) Back     alignment and domain information 
 Score =  345 bits (886), Expect = e-117
 Identities = 122/222 (54%), Positives = 159/222 (71%), Gaps = 9/222 (4%)

Query: 74  FTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSL 133
           F GFRDQD+  L NF +SNF  S +EK+LSV G NWGE D  G+ LTF VG K AFEV L
Sbjct: 1   FDGFRDQDLDKLQNFIKSNFSKSIDEKELSVKGWNWGEADFKGSNLTFDVGSKPAFEVPL 60

Query: 134 ADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRD 193
           ++VSQT LQGKN+V LEFH +D +G     SLME+ FH+P +NT+  GD      +VF++
Sbjct: 61  SNVSQT-LQGKNEVTLEFHQNDDSGV----SLMEMRFHVPVTNTEDDGD----AVEVFKE 111

Query: 194 KIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLF 253
            +++ ADV    E+A+VTFE I ILTPRGRY ++L+ +FLRL G+  D+KI YSS+ RLF
Sbjct: 112 TVLAKADVIQATEDAIVTFEEILILTPRGRYDIKLYPTFLRLHGKTYDYKIPYSSINRLF 171

Query: 254 LLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQS 295
           LLP  +Q   F V++LDPPIR+GQT YP++VLQFE D  ++ 
Sbjct: 172 LLPHKDQRQVFFVISLDPPIRQGQTRYPYLVLQFEKDEEMEL 213

SSRP1 has been implicated in transcriptional initiation and elongation and in DNA replication and repair. This domain belongs to the Pleckstrin homology fold superfamily. Length = 213
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241385 cd13231, PH2_SSRP1-like, Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|219876 pfam08512, Rtt106, Histone chaperone Rttp106-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
KOG0526 615 consensus Nucleosome-binding factor SPN, POB3 subu 100.0
COG5165508 POB3 Nucleosome-binding factor SPN, POB3 subunit [ 100.0
PF03531222 SSrecog: Structure-specific recognition protein (S 100.0
KOG1189960 consensus Global transcriptional regulator, cell d 99.98
PF0851295 Rtt106: Histone chaperone Rttp106-like; InterPro: 99.95
COG54061001 Nucleosome binding factor SPN, SPT16 subunit [Tran 99.94
PF1447096 bPH_3: Bacterial PH domain 95.9
PF0851295 Rtt106: Histone chaperone Rttp106-like; InterPro: 95.74
PF1447096 bPH_3: Bacterial PH domain 91.38
KOG0526 615 consensus Nucleosome-binding factor SPN, POB3 subu 90.17
COG0779153 Uncharacterized protein conserved in bacteria [Fun 88.81
PF0856779 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom 87.2
PF05764 240 YL1: YL1 nuclear protein; InterPro: IPR008895 The 85.86
PF04283221 CheF-arch: Chemotaxis signal transduction system p 83.97
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-155  Score=1209.99  Aligned_cols=493  Identities=46%  Similarity=0.766  Sum_probs=453.4

Q ss_pred             CCCCCcccceEecCCCCCCCeeEEEecCceeEEeCCCCceEEEecCCcceeEEEEecCcceEEEEEeCCcEEEEcCCChh
Q 009912            1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQ   80 (522)
Q Consensus         1 m~~~~~f~~i~~~~~g~~~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~   80 (522)
                      |+++++|+|||++++|+..+|+|||+++||+||+++||++++|+++||..+.|+|++|+|+|||.+|+|.+|+|+||+++
T Consensus         1 mae~l~fn~iyl~~~G~~~~G~lkit~~gi~~K~~~ggk~~~v~~sei~~~~w~k~~r~~~LrV~tk~g~~~~~~GF~d~   80 (615)
T KOG0526|consen    1 MAESLEFNDIYLEVSGHLKPGTLKITESGIGFKNSKGGKVVTVPASEIDKVKWQKGVRGYGLRVFTKDGGVYRFDGFRDD   80 (615)
T ss_pred             CCcccccCceEEecccccccceEEEccCceeEeeCCCCceEEeehHHhhhhhhhhhccccceEEEccCCceEEecCcCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCceEEEEeCCEeEEEEeccccccccccCCCeEEEEEecCCCCCCC
Q 009912           81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGAN  160 (522)
Q Consensus        81 d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef~~~~~~~~~  160 (522)
                      |+++|++||+++|++++++++||++|||||++.|.|+.|+|.+++||+|||||++|||| ++|||||+||||++|++   
T Consensus        81 d~~~L~~ff~~~~~~~i~qkel~ikGwNwGea~~~G~~l~F~~~skpiFEIP~s~Vsn~-l~gKNEv~LEFh~nDda---  156 (615)
T KOG0526|consen   81 DLEKLKSFFSSNFSITIEQKELSIKGWNWGEADFKGQELVFDVNSKPIFEIPLSDVSNT-LTGKNEVTLEFHQNDDA---  156 (615)
T ss_pred             HHHHHHHHHHHhhccchhhheeeecccccccccccCcEEEEeeCCceeEEeehhhhhhh-hcCCceEEEEEeccCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999 77999999999999984   


Q ss_pred             CCCceeEEEEEeCCCCCccCCCCCCChHHHHHHHHHhhcccccCCCcceEEEcCeeEEcCCcceEEEEeeccEEEecccc
Q 009912          161 EKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN  240 (522)
Q Consensus       161 ~~d~L~EmRf~iP~~~~~~~~~~~~~~a~~f~~~i~~ka~i~~~~g~~i~~f~dI~~ltPRGRydie~~~~~lrl~gkt~  240 (522)
                       +.+|||||||||.+..  .| ++++++++|++.|+++||+++++|++||+|++|+|+||||||+|+||+++||||||||
T Consensus       157 -~~~LmEmRF~iP~d~~--~g-ed~~~~e~F~~~v~~kAdv~~~~gdaI~~f~~i~~lTPRGRYdI~iy~t~lrL~GkTy  232 (615)
T KOG0526|consen  157 -PVGLMEMRFHIPEDQE--DG-EDRDKVEAFYENVLAKADVSSAVGDAIVSFEEILCLTPRGRYDIKIYPTFLRLHGKTY  232 (615)
T ss_pred             -CcceEEEEEecCcccc--cc-ccccHHHHHHHHHHHhcCcccccCCceEEeeeeeeecCCccceeEEehhhhhhccccc
Confidence             6779999999996543  22 4579999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCceEEEEEeccceeeeeccCCHHHHhhHhhcccccccccch
Q 009912          241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLI  320 (522)
Q Consensus       241 dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~lv~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~~  320 (522)
                      ||||||++|.|+|+|||+|++|+||||+|+||||||||||||||+||.++++++++|++++++|+++|+++|+++|+||+
T Consensus       233 DyKI~y~SI~rLflLPk~d~rh~~fVisldPPIRQGQTrY~~LV~qF~kDee~e~eLslsdE~l~~k~~~kL~k~ysg~i  312 (615)
T KOG0526|consen  233 DYKIPYKSINRLFLLPKKDQRHVYFVISLDPPIRQGQTRYPFLVLQFGKDEEVELELSLSDEELEEKYKGKLKKEYSGPI  312 (615)
T ss_pred             ceecchhheeeeEeccCCCCceEEEEEecCCccccCccccceEEEEeccccceeEeecccHHHHhhhhcchhhhhcCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCeeeccCCcccCCCCceeEeeccCceeEEEeccCceeecccCCEEEEcCceEEEEEEEecCCCccee
Q 009912          321 HEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH  400 (522)
Q Consensus       321 ~ev~~~i~k~l~~~ki~~P~~F~s~~g~~~VkCs~Ka~~G~LypLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~r  400 (522)
                      |+||+++||+|||+||++||.|.|+.|++||+|++||++|+||||++|||||||||+||+|+||++|+|+|++.+++++|
T Consensus       313 ~Ev~s~V~k~L~~rKit~Pg~F~s~~g~~av~CS~KAneG~LYPLekgFlFl~KP~l~I~f~EIS~V~fsR~~~s~t~tr  392 (615)
T KOG0526|consen  313 YEVFSIVMKALCGRKITVPGEFLSHSGTAAVKCSFKANEGLLYPLEKGFLFLPKPPLYIRFEEISSVNFSRSGLSGTSTR  392 (615)
T ss_pred             HHHHHHHHHHHhCceeeccccccccCCCceeeeeecccCceEeecccceEeecCCceEeeccceeeEEEEeccCCcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987677789


Q ss_pred             eEEEEEEEecCceEEEeeechhhhhhHHHHHhcCCcEEEeCCCCcccc-hhhhhcccCCCCCCCchHHHhhccCCCCCCC
Q 009912          401 YFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTD-GVAAVLQEDDDDAVDPHLERIKNEAGGDESD  479 (522)
Q Consensus       401 TFDl~v~~K~g~~~~Fs~I~reE~~~L~~fl~~k~i~i~n~~~~~~~~-~~~~~~~~~~d~~~d~~~~~~~~~~~dddde  479 (522)
                      ||||+|++|+|.+|+|++|+|+||..|++||++|+|+|+|++...+.- .++.+.+++.++++|      .+.++.||++
T Consensus       393 tFD~ei~lk~g~~~tFs~i~keE~~~L~~fl~sK~lki~N~~~~~~~D~~~~~~~~e~~~~edd------~~d~~~de~~  466 (615)
T KOG0526|consen  393 TFDFEITLKSGTSYTFSNISKEEYGKLFDFLNSKGLKIRNEGREDEIDEYLATLKAEDRDEEDD------SDDSSTDEDE  466 (615)
T ss_pred             eEEEEEEEcCCCeeeecccCHHHHHHHHHHHhhcCceeecCCcccccchHHhhhccccchhhhc------ccccccccch
Confidence            999999999999999999999999999999999999999996532211 122222222222221      1123345678


Q ss_pred             ccCcCCcC--CCCCCCCCCCCCCCCCCCCc
Q 009912          480 EEDSDFVA--DKDDGGSPTDDSGEEDSDAS  507 (522)
Q Consensus       480 eeDeDF~~--~~sd~~ee~Ds~~~~~~~~~  507 (522)
                      |+||||+.  +++||+|||||+..+++|++
T Consensus       467 e~Dedf~~~~~~d~vaee~dS~~~ds~~~e  496 (615)
T KOG0526|consen  467 EEDEDFKPGEEDDDVAEEFDSDEADSSDEE  496 (615)
T ss_pred             hhhhhcccCccccccccccCCccccccccc
Confidence            99999996  45679999999433344433

>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families Back     alignment and domain information
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics] Back     alignment and domain information
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity Back     alignment and domain information
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 [] Back     alignment and domain information
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
2gcj_A261 Crystal Structure Of The Pob3 Middle Domain Length 7e-46
2gcl_A261 Structure Of The Pob3 Middle Domain Length = 261 8e-45
3f5r_A191 The Crystal Structure Of A Subunit Of The Heterodim 1e-12
>pdb|2GCJ|A Chain A, Crystal Structure Of The Pob3 Middle Domain Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (460), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 150/254 (59%), Gaps = 1/254 (0%)
Query: 188 AQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYS 247
           A+ F +++   AD+G    +A+V+F+ +   TPRGRY ++++ + +RL+G+  ++K+Q+ 
Sbjct: 4   AEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHR 63
Query: 248 SVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTK 307
            + R+  LPK++  H  +V+ ++PP+RKGQT YP +VLQF+ D   + +L + +E     
Sbjct: 64  QIQRIVSLPKADDIHHLLVLAIEPPLRKGQTTYPFLVLQFQKDEETEVQLNLEDEDYEEN 123
Query: 308 YKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEK 367
           YKDKL+  Y    H V + +L+GL+  ++  PG+++S  D  AV  S KA +G LYPL+ 
Sbjct: 124 YKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDN 183
Query: 368 SFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHN 426
           +FFFL KP   I   ++  V   R     ++   FDL + L++ +    F NI + E   
Sbjct: 184 AFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQL 243
Query: 427 LFDFISGKGLKIMN 440
           L  F+  K L++ N
Sbjct: 244 LEQFLKSKNLRVKN 257
>pdb|2GCL|A Chain A, Structure Of The Pob3 Middle Domain Length = 261 Back     alignment and structure
>pdb|3F5R|A Chain A, The Crystal Structure Of A Subunit Of The Heterodimeric Fact Complex (Spt16p-Pob3p) Length = 191 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
2gcl_A261 Hypothetical 63.0 kDa protein in DAK1-ORC1 interge 1e-97
3fss_A237 Histone chaperone RTT106; chromosomal protein, nuc 1e-59
3f5r_A191 FACT complex subunit POB3; APC7736, FACT complex ( 8e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Length = 261 Back     alignment and structure
 Score =  295 bits (756), Expect = 1e-97
 Identities = 87/258 (33%), Positives = 149/258 (57%), Gaps = 1/258 (0%)

Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
            A+ F +++   AD+G    +A+V+F+ +   TPRGRY ++++ + +RL+G+  ++K+Q+
Sbjct: 3   MAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQH 62

Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
             + R+  LPK++  H  +V+ ++PP+R+GQT YP +VLQF+ D   + +L + +E    
Sbjct: 63  RQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEE 122

Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
            YKDKL+  Y    H V + +L+GL+  ++  PG+++S  D  AV  S KA +G LYPL+
Sbjct: 123 NYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLD 182

Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKT-EQEHLFRNIQRNEYH 425
            +FFFL KP   I   ++  V   R     ++   FDL + L++      F NI + E  
Sbjct: 183 NAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQ 242

Query: 426 NLFDFISGKGLKIMNLGD 443
            L  F+  K L++ N   
Sbjct: 243 LLEQFLKSKNLRVKNEDR 260
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A Length = 237 Back     alignment and structure
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae} Length = 191 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
2gcl_A261 Hypothetical 63.0 kDa protein in DAK1-ORC1 interge 100.0
3f5r_A191 FACT complex subunit POB3; APC7736, FACT complex ( 100.0
3fss_A237 Histone chaperone RTT106; chromosomal protein, nuc 100.0
3f5r_A191 FACT complex subunit POB3; APC7736, FACT complex ( 96.09
2gcl_A261 Hypothetical 63.0 kDa protein in DAK1-ORC1 interge 93.79
3fss_A237 Histone chaperone RTT106; chromosomal protein, nuc 92.11
1y5o_A115 TFB1, RNA polymerase II transcription factor B 73 85.36
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Back     alignment and structure
Probab=100.00  E-value=2.5e-83  Score=639.61  Aligned_cols=257  Identities=34%  Similarity=0.650  Sum_probs=227.7

Q ss_pred             ChHHHHHHHHHhhcccccCCCcceEEEcCeeEEcCCcceEEEEeeccEEEecccceeEeeccceeEEEeeecCCCCeEEE
Q 009912          186 PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFV  265 (522)
Q Consensus       186 ~~a~~f~~~i~~ka~i~~~~g~~i~~f~dI~~ltPRGRydie~~~~~lrl~gkt~dykI~y~~I~r~FlLP~pd~~~~~~  265 (522)
                      ++|++|+++||+||+|++++|++||+|+||+|+||||||+|+||+++||||||||||+|+|++|+|+|+||+||+.|++|
T Consensus         2 ~~~~~~~~~i~~ka~i~~~~gd~i~~~~dv~~ltPRGrydi~~~~~~lrl~gkt~dyki~~~~I~r~f~LP~pd~~~~~~   81 (261)
T 2gcl_A            2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMM   81 (261)
T ss_dssp             ------------------CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEE
T ss_pred             cHHHHHHHHHHhhccccccCCceEEEEcCceEEcCCCceEEEEecCcEEEeCCcccceechhhEEEEEEccCCCcCceEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCccCCCccCceEEEEEeccceeeeeccCCHHHHhhHhhcccccccccchHHHHHHHHhhhcCCeeeccCCcccC
Q 009912          266 VVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSA  345 (522)
Q Consensus       266 vi~Ld~PirqGqTky~~lv~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~~~ev~~~i~k~l~~~ki~~P~~F~s~  345 (522)
                      ||.|+||+|||||+|+||||||++++++++++|+++++++++|+++|+++|+|++|++|+++||+|+|+||+.|+.|+|+
T Consensus        82 vi~ld~PirqGqt~y~~lV~qf~~~e~~~~~ln~~~~~~~~ky~~~L~~~~~g~~~~vv~~ilk~l~g~kv~~P~~F~S~  161 (261)
T 2gcl_A           82 VMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSK  161 (261)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCT
T ss_pred             EEecCCCccCCCccCCeEEEEEeCCCceEeeecCCHHHHhhhhccccccccCCcHHHHHHHHHHHhcCCeeecCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEeeccCceeEEEeccCceeecccCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecC-ceEEEeeechhhh
Q 009912          346 QDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE-QEHLFRNIQRNEY  424 (522)
Q Consensus       346 ~g~~~VkCs~Ka~~G~LypLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g-~~~~Fs~I~reE~  424 (522)
                      .|++||+|++||++|+||||++||||+||||+||+|+||++|+|+|+|++++++|||||+|++|+| ++|+|+||+|+||
T Consensus       162 ~~~~~Vkcs~ka~eG~LypL~~gflF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~  241 (261)
T 2gcl_A          162 YDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ  241 (261)
T ss_dssp             TSCSCEEEEETTEEEEEEECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGH
T ss_pred             CCCceEEEeccCCceEEEEecCceEEeeCCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHH
Confidence            999999999999999999999999999999999999999999999998765557999999999999 9999999999999


Q ss_pred             hhHHHHHhcCCcEEEeCC
Q 009912          425 HNLFDFISGKGLKIMNLG  442 (522)
Q Consensus       425 ~~L~~fl~~k~i~i~n~~  442 (522)
                      ++|++||++|+|+|+|++
T Consensus       242 ~~L~~ylk~k~l~ikn~~  259 (261)
T 2gcl_A          242 QLLEQFLKSKNLRVKNED  259 (261)
T ss_dssp             HHHHHHHHHTTCCEEC--
T ss_pred             HHHHHHHHHcCCeeecCC
Confidence            999999999999999984
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A Back     alignment and structure
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Back     alignment and structure
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A Back     alignment and structure
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d2gcla1238 b.55.1.10 (A:237-474) FACT complex subunit POB3, m 6e-87
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 238 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  265 bits (680), Expect = 6e-87
 Identities = 82/235 (34%), Positives = 139/235 (59%), Gaps = 1/235 (0%)

Query: 207 EAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVV 266
           +A+V+F+ +   TPRGRY ++++ + +RL+G+  ++K+Q+  + R+  LPK++  H  +V
Sbjct: 4   DAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMMV 63

Query: 267 VTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTT 326
           + ++PP+R+GQT YP +VLQF+ D   + +L + +E     YKDKL+  Y    H V + 
Sbjct: 64  MAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSH 123

Query: 327 ILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDY 386
           +L+GL+  ++  PG+++S  D  AV  S KA +G LYPL+ +FFFL KP   I   ++  
Sbjct: 124 VLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSM 183

Query: 387 VEFERHAAGGSNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMN 440
           V   R     ++   FDL + L++      F NI + E   L  F+  K L++ N
Sbjct: 184 VNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN 238

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d2gcla1238 FACT complex subunit POB3, middle domain {Baker's 100.0
d2gcla1238 FACT complex subunit POB3, middle domain {Baker's 94.83
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 94.39
d1wkya1151 Endo-beta-1,4-mannanase C-terminal domain {Bacillu 89.16
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-74  Score=565.58  Aligned_cols=237  Identities=35%  Similarity=0.671  Sum_probs=225.7

Q ss_pred             CCCcceEEEcCeeEEcCCcceEEEEeeccEEEecccceeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCceE
Q 009912          204 GGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHI  283 (522)
Q Consensus       204 ~~g~~i~~f~dI~~ltPRGRydie~~~~~lrl~gkt~dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~l  283 (522)
                      ++|++||+|+||+|+||||||+|+||.++|||||++|||+|+|+||+|+|+||+|+++|+++||+|+||||||||+|+|+
T Consensus         1 ~~g~~i~~~~dv~~~~PRgk~~i~~~~~~lrl~g~~~d~~I~~~~I~~~f~lP~p~~~~~~~~~~L~ppi~~G~t~y~~~   80 (238)
T d2gcla1           1 VAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFL   80 (238)
T ss_dssp             CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEeCceEEcCCCceEEEEecCeEEEECCccceEEEhhheeEEEEccCCCCceEEEEEEecChhhcCCccCceE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccceeeeeccCCHHHHhhHhhcccccccccchHHHHHHHHhhhcCCeeeccCCcccCCCCceeEeeccCceeEEE
Q 009912          284 VLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLY  363 (522)
Q Consensus       284 v~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~~~ev~~~i~k~l~~~ki~~P~~F~s~~g~~~VkCs~Ka~~G~Ly  363 (522)
                      ||||+++++++++||+++++++++|.++|+++|+|+++++++++|+++++++++.|+.|.++.|++||+|++|+++|+||
T Consensus        81 v~qf~~~e~~~~~l~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~k~l~~~kv~~p~~f~~~~~~~~v~~~~~~~~G~L~  160 (238)
T d2gcla1          81 VLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLY  160 (238)
T ss_dssp             EEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCTTSCSCEEEEETTEEEEEE
T ss_pred             EEEEccCCCcEEEecCChHHHhhhhcchhhhhhcchHHHHHHHHHHHHhCcEecCCccccCCCCcceEEEeeccccEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCceeecccCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecC-ceEEEeeechhhhhhHHHHHhcCCcEEEe
Q 009912          364 PLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE-QEHLFRNIQRNEYHNLFDFISGKGLKIMN  440 (522)
Q Consensus       364 pLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g-~~~~Fs~I~reE~~~L~~fl~~k~i~i~n  440 (522)
                      ||++||||++|||+||+++||++|+|+|+|+|+.++|||||+|++|++ ++++|+||||+||++|++||++|+|+|+|
T Consensus       161 pl~~~llf~~KP~~~i~~~eI~~V~f~Rv~~~~~~~rtFD~~v~~k~~~~~~~fs~I~~~e~~~i~~~l~~~~ikikn  238 (238)
T d2gcla1         161 PLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN  238 (238)
T ss_dssp             ECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHHTTCCEEC
T ss_pred             EccCeEEEecCCcEEEEehhEeEEEEEeecCCccccceeeEEEEEeCCCccEEEeccCHHHHHHHHHHHHHCCCcccC
Confidence            999999999999999999999999999998876667999999999998 48999999999999999999999999998
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkya1 b.18.1.31 (A:340-490) Endo-beta-1,4-mannanase C-terminal domain {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure