Citrus Sinensis ID: 009967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
Protein Sequence
MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL
Secondary Structure (PSIPRED)
cccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHcccccccEEHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHccccHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcHHccccccccccHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcHccHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
miqllcicrsslslnklsklhslapnyLIETQKASVqkletpairtdsvscgsesdkfssvhqvfdevpdlnvvSATTIIGRFAKQHHYEEAIYLFSRMLLlnirpseftfgsvipsstaledlnlGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVfedthnpnvvSYTTMICGLLKRERFEDALKLFQemphrnvvsWNAMIggysqtgrnEEAVNLFIEMLReglvpnhstlpCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRingirpngVTLLGLLWACNhtglvekgysyfsqakledpgmlkpeHYACMVDLLSRSGRFKEAKEflydlpfdpgiGFWKALLggcqihsnvelGEFAARRIlaldpedvssYVMLSNALSvagkwdnvSNIRREMKekgmtrvpgcswieiKSKVHVFVtgdrnhhmnDEIYAVLRSCTEQIREFEL
Flexible Loop (DISEMBL)
MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVhqvfdevpdlNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRvfedthnpnvvSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAlsvagkwdnvsNIRREMkekgmtrvpgcswieIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL
Low Complexity Region (SEG)
MIQLLCICRsslslnklsklhslAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCaiiaaaniaaLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL
Disordered region (IsUnstruct)
**QLLCICRSSLSLNKLSKLHSLAPNYLIETQ***************************SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE*******
Disordered Region (DISOPRED)
MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE*
Disordered Region (DISEMBL)
MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETP******************VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL
Disordered Region (DISPRO)
MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	521	2.2.26 [Sep-21-2011]
Q9FIH2	517	Pentatricopeptide repeat-	yes	no	0.896	0.903	0.609	1e-173
Q9SIT7	697	Pentatricopeptide repeat-	no	no	0.888	0.664	0.388	1e-100
Q9SI53	630	Pentatricopeptide repeat-	no	no	0.773	0.639	0.379	2e-94
Q9FWA6	903	Pentatricopeptide repeat-	no	no	0.852	0.491	0.399	8e-93
Q9LIQ7	633	Pentatricopeptide repeat-	no	no	0.831	0.684	0.364	2e-90
O82380	738	Pentatricopeptide repeat-	no	no	0.890	0.628	0.347	8e-89
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.798	0.390	0.378	1e-88
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.854	0.569	0.377	2e-88
P0C899	686	Putative pentatricopeptid	no	no	0.880	0.669	0.334	3e-88
Q9CAA8	743	Putative pentatricopeptid	no	no	0.790	0.554	0.381	4e-88

>sp|Q9FIH2|PP414_ARATH Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1

 Score =  610 bits (1572), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/474 (60%), Positives = 369/474 (77%), Gaps = 7/474 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +SD   + H+VFDE+P+L+V+SAT +IGRF K+  + EA   F R+L L IRP+EFTFG+
Sbjct: 39  DSDLIRNAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGT 98

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI SST   D+ LGKQLH +A K+GL SNVFVGSA+L+ Y+KLS++ +A R F+DT +PN
Sbjct: 99  VIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPN 158

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS T +I G LK+  FE+AL LF+ MP R+VV+WNA+IGG+SQTGRNEEAVN F++MLR
Sbjct: 159 VVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLR 218

Query: 234 EGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSM 291
           EG+V PN ST PCAI A +NIA+ G GKS HACA+KFLGK  +VFV NSLISFY+KCG+M
Sbjct: 219 EGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNM 278

Query: 292 EDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLL 348
           EDSLL F+KL E  RNIV+WN++I GYA NGRGEEA+  FE+M +   +RPN VT+LG+L
Sbjct: 279 EDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVL 338

Query: 349 WACNHTGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +ACNH GL+++GY YF++A    +DP +L+ EHYACMVD+LSRSGRFKEA+E +  +P D
Sbjct: 339 FACNHAGLIQEGYMYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLD 398

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           PGIGFWKALLGGCQIHSN  L + AA +IL LDP DVSSYVMLSNA S    W NVS IR
Sbjct: 399 PGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIR 458

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           R+MKE G+ R  GCSWIE++ ++ VFV  D+N+ + DE+Y +L   ++ + E E
Sbjct: 459 RKMKETGLKRFTGCSWIEVRDQIRVFVNADKNNELKDEVYRMLALVSQHLEENE 512

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 287/474 (60%), Gaps = 11/474 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+ +D      +VFDE+ D NVVS  ++I  F +     EA+ +F  ML   + P E T
Sbjct: 200 CGNVND----AQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
             SVI +  +L  + +G+++H    K   L++++ + +A +D+Y K S I+EA  +F+  
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              NV++ T+MI G       + A  +F +M  RNVVSWNA+I GY+Q G NEEA++LF 
Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL------DVFVGNSLIS 283
            + RE + P H +    + A A++A L +G   H   +K   K       D+FVGNSLI 
Sbjct: 376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG +E+  LVF K+ ER+ V+WNA+I G+AQNG G EA+E F  M  +G +P+ +T
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           ++G+L AC H G VE+G  YFS    +       +HY CMVDLL R+G  +EAK  + ++
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    W +LL  C++H N+ LG++ A ++L ++P +   YV+LSN  +  GKW++V 
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           N+R+ M+++G+T+ PGCSWI+I+   HVF+  D++H    +I+++L     ++R
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1

 Score =  346 bits (888), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/445 (37%), Positives = 272/445 (61%), Gaps = 42/445 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +  HQ+FD++P  NV+S TT+I  ++K   +++A+ L   ML  N+RP+ +T+ SV+ S
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              + D+   + LH    K GL+S+VFV SA++D++ KL               P     
Sbjct: 172 CNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGE-------------P----- 210

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                        EDAL +F EM   + + WN++IGG++Q  R++ A+ LF  M R G +
Sbjct: 211 -------------EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              +TL   + A   +A L +G   H   VK+    D+ + N+L+  Y KCGS+ED+L V
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALRV 315

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++ ER+++TW+ +I G AQNG  +EA++ FERM+ +G +PN +T++G+L+AC+H GL+
Sbjct: 316 FNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLL 375

Query: 358 EKGYSYF-SQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           E G+ YF S  KL   DP     EHY CM+DLL ++G+  +A + L ++  +P    W+ 
Sbjct: 376 EDGWYYFRSMKKLYGIDP---VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C++  N+ L E+AA++++ALDPED  +Y +LSN  + + KWD+V  IR  M+++G+
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNH 499
            + PGCSWIE+  ++H F+ GD +H
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSH 517

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2

 Score =  341 bits (875), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 184/461 (39%), Positives = 275/461 (59%), Gaps = 17/461 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+   + VS   II    +     E ++LF  ML   I P EFTFGS++ + T   
Sbjct: 438 RVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-G 496

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G ++H+   K G+ SN  VG +++D+Y K   IEEA ++         VS T    
Sbjct: 497 SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGT---- 552

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            + + E+  +  K  QEM     VSWN++I GY    ++E+A  LF  M+  G+ P+  T
Sbjct: 553 -MEELEKMHN--KRLQEM----CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFT 605

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +   AN+A+ G+GK  HA  +K   + DV++ ++L+  Y+KCG + DS L+F+K  
Sbjct: 606 YATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSL 665

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ VTWNA+ICGYA +G+GEEAI+ FERM +  I+PN VT + +L AC H GL++KG  
Sbjct: 666 RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE 725

Query: 363 YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF   K  D G L P+  HY+ MVD+L +SG+ K A E + ++PF+     W+ LLG C 
Sbjct: 726 YFYMMK-RDYG-LDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCT 783

Query: 421 IH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           IH +NVE+ E A   +L LDP+D S+Y +LSN  + AG W+ VS++RR M+   + + PG
Sbjct: 784 IHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPG 843

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           CSW+E+K ++HVF+ GD+ H   +EIY  L     +++ F+
Sbjct: 844 CSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFD 884

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1

 Score =  333 bits (855), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 268/469 (57%), Gaps = 36/469 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS         +VF+++P  + V+ TT+I  +++     +A+  F++ML     P+EFT
Sbjct: 108 CGS----LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             SVI ++ A      G QLH +  K G  SNV VGSA+LDLY +   +++A  VF    
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVF---- 219

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                DAL+       RN VSWNA+I G+++    E+A+ LF  
Sbjct: 220 ---------------------DALE------SRNDVSWNALIAGHARRSGTEKALELFQG 252

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR+G  P+H +      A ++   L  GK  HA  +K   KL  F GN+L+  YAK GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+  +FD+L +R++V+WN+++  YAQ+G G+EA+ +FE MR  GIRPN ++ L +L A
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTA 372

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+GL+++G+ Y+   K +D  + +  HY  +VDLL R+G    A  F+ ++P +P   
Sbjct: 373 CSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA 431

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            WKALL  C++H N ELG +AA  +  LDP+D   +V+L N  +  G+W++ + +R++MK
Sbjct: 432 IWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMK 491

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           E G+ + P CSW+EI++ +H+FV  D  H   +EI         +I+E 
Sbjct: 492 ESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  328 bits (840), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 282/469 (60%), Gaps = 5/469 (1%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           SCG       S  +VF  + + +VVS  ++I  F ++   ++A+ LF +M   +++ S  
Sbjct: 178 SCGD----LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHV 233

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   V+ +   + +L  G+Q+ ++  +  +  N+ + +A+LD+Y K  SIE+A R+F+  
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              + V++TTM+ G    E +E A ++   MP +++V+WNA+I  Y Q G+  EA+ +F 
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353

Query: 230 EM-LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           E+ L++ +  N  TL   + A A + AL +G+  H+   K   +++  V ++LI  Y+KC
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +E S  VF+ + +R++  W+A+I G A +G G EA++ F +M+   ++PNGVT   + 
Sbjct: 414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+HTGLV++  S F Q +     + + +HYAC+VD+L RSG  ++A +F+  +P  P 
Sbjct: 474 CACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPS 533

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALLG C+IH+N+ L E A  R+L L+P +  ++V+LSN  +  GKW+NVS +R+ 
Sbjct: 534 TSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKH 593

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M+  G+ + PGCS IEI   +H F++GD  H M++++Y  L    E+++
Sbjct: 594 MRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 642

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  327 bits (839), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 261/447 (58%), Gaps = 31/447 (6%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           +VVS TT+I  + + +  ++A+  F +ML   IR  E    + + +   L+ L  G+Q+H
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 614

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A A   G  S++   +A++ LY +   IEE+   FE T   + ++               
Sbjct: 615 AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA--------------- 659

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                           WNA++ G+ Q+G NEEA+ +F+ M REG+  N+ T   A+ AA+
Sbjct: 660 ----------------WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS 703

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
             A +  GK  HA   K     +  V N+LIS YAKCGS+ D+   F +++ +N V+WNA
Sbjct: 704 ETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNA 763

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I  Y+++G G EA++ F++M  + +RPN VTL+G+L AC+H GLV+KG +YF     E 
Sbjct: 764 IINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEY 823

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               KPEHY C+VD+L+R+G    AKEF+ ++P  P    W+ LL  C +H N+E+GEFA
Sbjct: 824 GLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFA 883

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A  +L L+PED ++YV+LSN  +V+ KWD     R++MKEKG+ + PG SWIE+K+ +H 
Sbjct: 884 AHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 943

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           F  GD+NH + DEI+   +  T++  E
Sbjct: 944 FYVGDQNHPLADEIHEYFQDLTKRASE 970

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  326 bits (836), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 265/453 (58%), Gaps = 8/453 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     Q FD +   +VVS  TII  +A+    +EA  LF    + ++    FT+ +++ 
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVS 289

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                  +   ++L         + N    +A+L  Y++   +E A  +F+     NV +
Sbjct: 290 GYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST 345

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TMI G  +  +  +A  LF +MP R+ VSW AMI GYSQ+G + EA+ LF++M REG 
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N S+   A+   A++ AL +GK  H   VK   +   FVGN+L+  Y KCGS+E++  
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 465

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F ++  ++IV+WN +I GY+++G GE A+ FFE M+  G++P+  T++ +L AC+HTGL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V+KG  YF     +   M   +HYACMVDLL R+G  ++A   + ++PF+P    W  LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G  ++H N EL E AA +I A++PE+   YV+LSN  + +G+W +V  +R  M++KG+ +
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           VPG SWIEI++K H F  GD  H   DEI+A L
Sbjct: 646 VPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 678

Arabidopsis thaliana (taxid: 3702)

>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1

 Score =  326 bits (835), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/500 (33%), Positives = 276/500 (55%), Gaps = 41/500 (8%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +S  +VFDE+P+ NV+    +I  +     Y E + +F  M   N+RP  +TF  V+ + 
Sbjct: 91  ASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKAC 150

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           +    + +G+++H  ATKVGL S +FVG+ ++ +Y K   + EA  V ++    +VVS+ 
Sbjct: 151 SCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 210

Query: 179 TMICGLLKRERFEDALK-------------------------------------LFQEMP 201
           +++ G  + +RF+DAL+                                     +F +M 
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 270

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            +++VSWN MIG Y +     EAV L+  M  +G  P+  ++   + A  + +AL +GK 
Sbjct: 271 KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H    +     ++ + N+LI  YAKCG +E +  VF+ +  R++V+W A+I  Y  +GR
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EH 379
           G +A+  F +++ +G+ P+ +  +  L AC+H GL+E+G S F    + D   + P  EH
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL--MTDHYKITPRLEH 448

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
            ACMVDLL R+G+ KEA  F+ D+  +P    W ALLG C++HS+ ++G  AA ++  L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           PE    YV+LSN  + AG+W+ V+NIR  MK KG+ + PG S +E+   +H F+ GDR+H
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 500 HMNDEIYAVLRSCTEQIREF 519
             +DEIY  L    ++++E 
Sbjct: 569 PQSDEIYRELDVLVKKMKEL 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1

 Score =  325 bits (834), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 169/443 (38%), Positives = 251/443 (56%), Gaps = 31/443 (6%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS   +I   A+    +EAI  F  M +  ++  ++ FGSV+P+   L  +N GKQ+HA 
Sbjct: 236 VSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHAC 295

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             +   Q +++VGSA++D+Y K   +  A  VF+                          
Sbjct: 296 IIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFD-------------------------- 329

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                 M  +NVVSW AM+ GY QTGR EEAV +F++M R G+ P+H TL  AI A AN+
Sbjct: 330 -----RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           ++L  G  FH  A+       V V NSL++ Y KCG ++DS  +F+++  R+ V+W A++
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMV 444

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
             YAQ GR  E I+ F++M  +G++P+GVTL G++ AC+  GLVEKG  YF     E   
Sbjct: 445 SAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI 504

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
           +    HY+CM+DL SRSGR +EA  F+  +PF P    W  LL  C+   N+E+G++AA 
Sbjct: 505 VPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAE 564

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFV 493
            ++ LDP   + Y +LS+  +  GKWD+V+ +RR M+EK + + PG SWI+ K K+H F 
Sbjct: 565 SLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFS 624

Query: 494 TGDRNHHMNDEIYAVLRSCTEQI 516
             D +    D+IYA L     +I
Sbjct: 625 ADDESSPYLDQIYAKLEELNNKI 647

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
297741541	819	unnamed protein product [Vitis vinifera]	0.955	0.608	0.692	0.0
359481504	538	PREDICTED: pentatricopeptide repeat-cont	0.955	0.925	0.692	0.0
147859488	795	hypothetical protein VITISV_021357 [Viti	0.980	0.642	0.668	0.0
255584555	519	pentatricopeptide repeat-containing prot	0.948	0.951	0.675	0.0
356561520	506	PREDICTED: pentatricopeptide repeat-cont	0.946	0.974	0.665	0.0
449448675	516	PREDICTED: pentatricopeptide repeat-cont	0.879	0.887	0.714	0.0
449523361	516	PREDICTED: pentatricopeptide repeat-cont	0.879	0.887	0.712	0.0
224088569	504	predicted protein [Populus trichocarpa]	0.794	0.821	0.695	0.0
334188141	517	pentatricopeptide repeat-containing prot	0.896	0.903	0.609	1e-172
242054925	458	hypothetical protein SORBIDRAFT_03g03930	0.840	0.956	0.6	1e-163

>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/500 (69%), Positives = 414/500 (82%), Gaps = 2/500 (0%)

Query: 21  HSLAPNYLIETQK--ASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           H+LA N L E+Q+      KL T  +  D V   S S       ++FDEVP+ +VVSAT 
Sbjct: 303 HALACNQLKESQRIHGRAIKLGTTILEPDIVCSYSASKALWDACKLFDEVPNWDVVSATA 362

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
            IG FA+ HH+EEAIY FSRML LNI+P++F+FG+VIPSSTAL+DLN G+QLHA A K+G
Sbjct: 363 TIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMG 422

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+SNVFVGSA++D Y KL+SI EA + FEDTH PNVVSYTT+I G LK+ERF+DAL LF+
Sbjct: 423 LESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFR 482

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP RNVVSWNAMI GYSQ G NEEAVNLF+ MLREG +PN  T PCAI A ANIAALGM
Sbjct: 483 KMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGM 542

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+SFH  AVKFLGK DVF+GNSL+SFYAKCGSME+SLLVF+ L ++NIV+WNA+ICGYA 
Sbjct: 543 GRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYAN 602

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +GRG EAI FFE+M+  G+RPN VTLLGLL ACNH+GLV+KGYSYF++A++E+PG+L PE
Sbjct: 603 HGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPE 662

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           H+ACMVDLLSRSGRFKEA++FL++LPF PGIGFWKALLGGC+IHSN+ELGE AAR+ILAL
Sbjct: 663 HHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILAL 722

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           DPEDVSSYVMLSNA S AG+W +VS IR+EM+EK M  VPG SWIEI+SKVH+FVTGDRN
Sbjct: 723 DPEDVSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRN 782

Query: 499 HHMNDEIYAVLRSCTEQIRE 518
           H  +DEIY VL  C + +RE
Sbjct: 783 HDQHDEIYQVLGFCIQHLRE 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Vitis vinifera]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/500 (69%), Positives = 414/500 (82%), Gaps = 2/500 (0%)

Query: 21  HSLAPNYLIETQK--ASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           H+LA N L E+Q+      KL T  +  D V   S S       ++FDEVP+ +VVSAT 
Sbjct: 22  HALACNQLKESQRIHGRAIKLGTTILEPDIVCSYSASKALWDACKLFDEVPNWDVVSATA 81

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
            IG FA+ HH+EEAIY FSRML LNI+P++F+FG+VIPSSTAL+DLN G+QLHA A K+G
Sbjct: 82  TIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMG 141

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+SNVFVGSA++D Y KL+SI EA + FEDTH PNVVSYTT+I G LK+ERF+DAL LF+
Sbjct: 142 LESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFR 201

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP RNVVSWNAMI GYSQ G NEEAVNLF+ MLREG +PN  T PCAI A ANIAALGM
Sbjct: 202 KMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGM 261

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+SFH  AVKFLGK DVF+GNSL+SFYAKCGSME+SLLVF+ L ++NIV+WNA+ICGYA 
Sbjct: 262 GRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYAN 321

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +GRG EAI FFE+M+  G+RPN VTLLGLL ACNH+GLV+KGYSYF++A++E+PG+L PE
Sbjct: 322 HGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPE 381

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           H+ACMVDLLSRSGRFKEA++FL++LPF PGIGFWKALLGGC+IHSN+ELGE AAR+ILAL
Sbjct: 382 HHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILAL 441

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           DPEDVSSYVMLSNA S AG+W +VS IR+EM+EK M  VPG SWIEI+SKVH+FVTGDRN
Sbjct: 442 DPEDVSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRN 501

Query: 499 HHMNDEIYAVLRSCTEQIRE 518
           H  +DEIY VL  C + +RE
Sbjct: 502 HDQHDEIYQVLGFCIQHLRE 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/525 (66%), Positives = 421/525 (80%), Gaps = 14/525 (2%)

Query: 8   CRSSLSLNKLSKLHSLAP------------NYLIETQKASVQ--KLETPAIRTDSVSCGS 53
           C SS   +    LHSLA             N L E+Q+A  +  KL T  +  D V   S
Sbjct: 254 CPSSDGTDAYKTLHSLAKFKPQRETQALACNQLKESQRAHGRAVKLGTTILEPDIVCSYS 313

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
            S +     ++FDEVP+ +VVSAT  IG FA+ HH+EEAIY FSRML LNI+P++F+FG+
Sbjct: 314 ASKELWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGT 373

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VIPS+TAL+DLN G+QLHA A K+GL+SNVFVGSA++D Y KL+SI EA + FEDTH PN
Sbjct: 374 VIPSATALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPN 433

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVSYTT+I G LK+ERF+DAL LF+ MP RNVVSWNAMI GYSQ G NEEAVNLF+ MLR
Sbjct: 434 VVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLR 493

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG +PN  T PCAI A ANIAALGMG+SFH  AVKFLGK DVF+GNSL+SFYAKCGSME+
Sbjct: 494 EGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEE 553

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           SLLVF+ L ++NIV+WNA+ICGYA +GRG EAI FFE+M+  G+RPN VTLLGLL ACNH
Sbjct: 554 SLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNH 613

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           +GLV+KGYSYF++A++E+PG+L PEH+ACMVDLLSRSGRFKEA++FL++LPF PGIGFWK
Sbjct: 614 SGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWK 673

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALLGGC+IHSN+ELGE AAR+ILALDPEDVSSYVMLSNA S AG+W +VS IR+EM+EK 
Sbjct: 674 ALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSVSMIRKEMREKR 733

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           M  VPG SWIEI+SKVH+FVTGDRNH  +DEIY VL  C + +RE
Sbjct: 734 MKGVPGSSWIEIRSKVHIFVTGDRNHDQHDEIYQVLGFCIQHLRE 778

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/502 (67%), Positives = 404/502 (80%), Gaps = 8/502 (1%)

Query: 19  KLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           K+HSLA  +          K E   +  D   C S+S+    V ++FDE+P+L+V+S TT
Sbjct: 18  KIHSLASGH--------AHKAECSPVPVDIKVCRSKSNIRMDVDELFDEMPELDVLSVTT 69

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +IGRFA+QH YEEA+ LFSRMLLLNI+P+EFTF +VI SST L+++ LGKQLHA   K+G
Sbjct: 70  LIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKNIYLGKQLHARTMKMG 129

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L + VFVGSA+LD Y KL S EEA   FED   PNVVSYTT+I G LK+ + +DAL+LFQ
Sbjct: 130 LNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQ 189

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           EMP RNVVSWNAM+GG+SQ G NEEAV+LFIEMLREG +PN ST PCAI +AAN+A+LGM
Sbjct: 190 EMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGM 249

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GKSFHACAVK L   DVFV NSL+SFYAKCGSMEDSLLVF++L +RN V+WNAVICG+AQ
Sbjct: 250 GKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQ 309

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           NGRGE+A+ FFERMR  G+RPN VTLLGLL ACNH GLVEKGY YF+Q + E+PG+LKPE
Sbjct: 310 NGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPE 369

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HYACMVDLLSR GR KEA +FL+DLPFDPG GFWKALLGGC IHSN EL + AA++ILAL
Sbjct: 370 HYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIHSNAELSDLAAQKILAL 429

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           DPEDVSSYVMLSNA S AG+W  VS IRREMKEKG+ R+PGCSWIE++SK+HVF+  D+N
Sbjct: 430 DPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGCSWIEVRSKIHVFLNSDKN 489

Query: 499 HHMNDEIYAVLRSCTEQIREFE 520
           HH  +EIY+ L+ C EQ+RE E
Sbjct: 490 HHQKEEIYSFLKFCVEQLREIE 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Glycine max]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/493 (66%), Positives = 395/493 (80%)

Query: 28  LIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH 87
           + +T  A+  K E     +D      +S  F    Q+F+E+ DL V SATT+I  F K+H
Sbjct: 1   MTKTHHANATKHEASVAHSDINPYNLDSTTFHVACQLFEEMSDLTVASATTMIQGFVKRH 60

Query: 88  HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
            +E+AIYLFS+ML   IRP+EFTFG++I SS AL ++ +GKQLHA A K+GL  +VFVGS
Sbjct: 61  CHEDAIYLFSKMLASKIRPNEFTFGTLINSSAALGNVVVGKQLHACAMKIGLSCHVFVGS 120

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
           ++LDLY K S+IE+A + F DT +PNVVSYTT+ICG LKR RFEDAL++F EMP RNVVS
Sbjct: 121 SLLDLYFKQSTIEDAQKAFGDTQHPNVVSYTTLICGYLKRGRFEDALRVFHEMPERNVVS 180

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WNAM+GG SQTG NEEAVN FI MLREG +PN ST PC I AAANIA+LG+GKSFHACA+
Sbjct: 181 WNAMVGGCSQTGHNEEAVNFFIGMLREGFIPNESTFPCVICAAANIASLGIGKSFHACAI 240

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           KFLGK+D FVGNSLISFYAKCGSMEDSLL+FDKL +RNIV+WNA+ICGYAQNGRG EAI 
Sbjct: 241 KFLGKVDQFVGNSLISFYAKCGSMEDSLLMFDKLFKRNIVSWNAMICGYAQNGRGAEAIS 300

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
           FFERM   G +PN VTLLGLLWACNH GLV++GYSYF++A+LE PG+LK EHYACMV+LL
Sbjct: 301 FFERMCSEGYKPNYVTLLGLLWACNHAGLVDEGYSYFNRARLESPGLLKSEHYACMVNLL 360

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447
           +RSGRF EA++FL  +PFDPG+GFWKALL GCQIHSN+ LGE AAR+IL LDP+DVSSYV
Sbjct: 361 ARSGRFAEAEDFLQSVPFDPGLGFWKALLAGCQIHSNMRLGELAARKILDLDPDDVSSYV 420

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           MLSNA S AGKW +V+ +R EMKEKGM R+PG SWIE++ +VH F+TGD+NH   DEIY 
Sbjct: 421 MLSNAHSAAGKWSDVATVRTEMKEKGMKRIPGSSWIEVRGEVHAFLTGDQNHDKKDEIYL 480

Query: 508 VLRSCTEQIREFE 520
           +L    E +RE E
Sbjct: 481 LLNFFFEHLRENE 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448675|ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucumis sativus]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/459 (71%), Positives = 394/459 (85%), Gaps = 1/459 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q++D++P LNVVSATT IGR A+QH +EEA+ LFS ML+LN+RP+EFTFG+VI S  AL 
Sbjct: 50  QLYDKMPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSPKALG 109

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D+++GKQLH  A K GL SNVFVGSA+LDLY+K+  IEEA R FED   PNVVSYT++I 
Sbjct: 110 DIHIGKQLHVCAIKTGLHSNVFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLIS 169

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK ER  DAL++F EMP RNVVSWN+MIGG+SQ G NE+AV+LFI+MLREG++P  ST
Sbjct: 170 GYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQST 229

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL- 301
            PCAI AAANIA++G+G+SFHACAVKF GKLDVFV NSLISFYAKCGSMEDSLLVF+KL 
Sbjct: 230 FPCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFYAKCGSMEDSLLVFNKLL 289

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN+V+WNAV+ G+AQNGRG+EAI+F++RM + G +PN VT L LLWACNH GLV++GY
Sbjct: 290 DERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGY 349

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           SYF+QA+L++P +LK EHYACMVDLLSRSG+FK A+EF++DLPFDPGIGFWKALLGGCQI
Sbjct: 350 SYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGGCQI 409

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           HSNVELGE AA+RILALDP DVSSYVM+SNA S AGKW +VS +RREMKEKG+ R+PGCS
Sbjct: 410 HSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRREMKEKGLKRIPGCS 469

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           WIEI+SKVHVFVTGD+NHH  DEIY+ L+   E ++E E
Sbjct: 470 WIEIRSKVHVFVTGDKNHHQKDEIYSALKFFVEHLKERE 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523361|ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Cucumis sativus]

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/459 (71%), Positives = 395/459 (86%), Gaps = 1/459 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q++D++P LNVVSATT IGR A+QH +EEA+ LFS ML+LN+RP+EFTFG+VI S+ AL 
Sbjct: 50  QLYDKLPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSAKALG 109

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D+++GKQLH  A K GL SN+FVGSA+LDLY+K+  IEEA R FED   PNVVSYT++I 
Sbjct: 110 DIHIGKQLHVCAIKTGLHSNLFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLIS 169

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK ER  DAL++F EMP RNVVSWN+MIGG+SQ G NE+AV+LFI+MLREG++P  ST
Sbjct: 170 GYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQST 229

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL- 301
            PCAI AAANIA++G+G+SFHACAVKF GKLDVFV NSLISFYAKCGSMEDSLLVF+KL 
Sbjct: 230 FPCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFYAKCGSMEDSLLVFNKLL 289

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN+V+WNAV+ G+AQNGRG+EAI+F++RM + G +PN VT L LLWACNH GLV++GY
Sbjct: 290 DERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGY 349

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           SYF+QA+L++P +LK EHYACMVDLLSRSG+FK A+EF++DLPFDPGIGFWKALLGGCQI
Sbjct: 350 SYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGGCQI 409

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           HSNVELGE AA+RILALDP DVSSYVM+SNA S AGKW +VS +RREMKEKG+ R+PGCS
Sbjct: 410 HSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRREMKEKGLKRIPGCS 469

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           WIEI+SKVHVFVTGD+NHH  DEIY+ L+   E ++E E
Sbjct: 470 WIEIRSKVHVFVTGDKNHHQKDEIYSALKFFVEHLKERE 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa] gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/447 (69%), Positives = 373/447 (83%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD +PDL+VVSATTIIG+FA+ H Y EAI LFSRML LN+ P+EFTFG+VI SST+L 
Sbjct: 48  QVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFLNVTPNEFTFGTVIHSSTSLG 107

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DLNLG+Q  A A K+GL   VFVGSA+LD Y KL SI+EA R FED  +PN+VSYT +I 
Sbjct: 108 DLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTALIH 167

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK+ RFE+A +LF++MP RN+V+WNAMIGG+SQ G+NEEAVNLF+EM+REGLVP   T
Sbjct: 168 GYLKKGRFEEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYT 227

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
            PCAIIAAANIAAL MG+SFHACA+K +G+  VFVGNSLISFYAKCGSMEDSL +F +L 
Sbjct: 228 FPCAIIAAANIAALEMGRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFYELP 287

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER IV+WNAVICG+AQNGRGE A++F+ERMR  G+RP+ VTLLGLLWACNH GLV+KGYS
Sbjct: 288 ERTIVSWNAVICGFAQNGRGENAVDFYERMRNTGLRPDSVTLLGLLWACNHAGLVDKGYS 347

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF++A+LE P +LKP+HYACMVDLLSR G FKEA+EFL DLPF+PG+GFWKALLGGC+IH
Sbjct: 348 YFNRARLEHPSLLKPKHYACMVDLLSRCGCFKEAQEFLRDLPFNPGVGFWKALLGGCKIH 407

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
           SN ELG  A R IL LDP+D SSY+MLSNA S AG+W + S IR+E+  +G+ R+P  SW
Sbjct: 408 SNTELGALAGRNILDLDPKDASSYIMLSNAHSAAGRWQDASVIRQEIHARGLKRIPASSW 467

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           IEIK+KVHVFV  D +HH  D+IY+VL
Sbjct: 468 IEIKTKVHVFVNCDMSHHQKDDIYSVL 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188141|ref|NP_199060.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170829|sp|Q9FIH2.1|PP414_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g42450, mitochondrial; Flags: Precursor gi|9759481|dbj|BAB10486.1| unnamed protein product [Arabidopsis thaliana] gi|332007429|gb|AED94812.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/474 (60%), Positives = 369/474 (77%), Gaps = 7/474 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +SD   + H+VFDE+P+L+V+SAT +IGRF K+  + EA   F R+L L IRP+EFTFG+
Sbjct: 39  DSDLIRNAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGT 98

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI SST   D+ LGKQLH +A K+GL SNVFVGSA+L+ Y+KLS++ +A R F+DT +PN
Sbjct: 99  VIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPN 158

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS T +I G LK+  FE+AL LF+ MP R+VV+WNA+IGG+SQTGRNEEAVN F++MLR
Sbjct: 159 VVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLR 218

Query: 234 EGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSM 291
           EG+V PN ST PCAI A +NIA+ G GKS HACA+KFLGK  +VFV NSLISFY+KCG+M
Sbjct: 219 EGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNM 278

Query: 292 EDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLL 348
           EDSLL F+KL E  RNIV+WN++I GYA NGRGEEA+  FE+M +   +RPN VT+LG+L
Sbjct: 279 EDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVL 338

Query: 349 WACNHTGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +ACNH GL+++GY YF++A    +DP +L+ EHYACMVD+LSRSGRFKEA+E +  +P D
Sbjct: 339 FACNHAGLIQEGYMYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLD 398

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           PGIGFWKALLGGCQIHSN  L + AA +IL LDP DVSSYVMLSNA S    W NVS IR
Sbjct: 399 PGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIR 458

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           R+MKE G+ R  GCSWIE++ ++ VFV  D+N+ + DE+Y +L   ++ + E E
Sbjct: 459 RKMKETGLKRFTGCSWIEVRDQIRVFVNADKNNELKDEVYRMLALVSQHLEENE 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor] gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 267/445 (60%), Positives = 343/445 (77%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  +VVSAT  IG   ++  + +A+ LFS++L   + P+EFTFG+V+ S+TAL     G
Sbjct: 1   MPHRDVVSATAAIGALTRRGRHRDALALFSQVLADGVAPNEFTFGTVLRSATALRAPRAG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            QLHA A K+GL SNVFVGSA+LD Y K+ ++ EA  V +DT  PNVVSYT +I GLLK 
Sbjct: 61  VQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVLDDTREPNVVSYTALIAGLLKN 120

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
             F++A +LF+ MP RNVVSWNAMIGG SQ G +EEAVNLF+EM REG+ PN ST PC +
Sbjct: 121 GMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVNLFLEMCREGVTPNESTFPCVL 180

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            + AN  ALG+G+S HA A+KFLGKLDV++GNSL+SFYA+CGS+EDS+L F K+  +N+V
Sbjct: 181 TSVANAGALGVGRSVHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKMNRKNVV 240

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA+ICGYAQNG+GEEA++ +  MR  G++P+ VTLLGLL+ CNH GLV++GY+ F   
Sbjct: 241 SWNALICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHAGLVDEGYALFKTT 300

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           ++E PG+LKPEHYAC+VDLLSR+ RF  AK FL +LPF+PGIGFWKAL+GGCQIH N EL
Sbjct: 301 EMEQPGILKPEHYACVVDLLSRAKRFDNAKRFLEELPFEPGIGFWKALVGGCQIHWNREL 360

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            E  A+RI ALDP+D SSY++LSN  S +G W +VS IRRE+KEKG+ R+ GCSWIE+  
Sbjct: 361 AESVAKRIHALDPKDTSSYILLSNVYSASGSWQSVSMIRREIKEKGLKRITGCSWIEVHD 420

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSC 512
           KVHVF  GD  HH +DEIY++L  C
Sbjct: 421 KVHVFSNGDYRHHQSDEIYSMLEVC 445

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
TAIR|locus:2054131	697	SLO2 "AT2G13600" [Arabidopsis	0.886	0.662	0.385	3.5e-91
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.633	0.310	0.412	7.9e-91
TAIR|locus:2057630	727	AT2G33680 "AT2G33680" [Arabido	0.598	0.429	0.401	1.3e-84
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.629	0.368	0.389	2.8e-82
TAIR|locus:2122551	834	AT4G39530 [Arabidopsis thalian	0.625	0.390	0.385	9.4e-82
TAIR|locus:2198546	760	AT1G20230 "AT1G20230" [Arabido	0.856	0.586	0.344	4e-81
TAIR|locus:2155740	738	AT5G65570 [Arabidopsis thalian	0.652	0.460	0.369	5.1e-81
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	0.869	0.576	0.361	1.8e-80
TAIR|locus:2060640	738	OTP81 "ORGANELLE TRANSCRIPT PR	0.888	0.627	0.344	2.2e-80
TAIR|locus:2096414	882	AT3G03580 [Arabidopsis thalian	0.604	0.357	0.361	8e-80

TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 183/475 (38%), Positives = 284/475 (59%)

Query:    51 CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
             CG+ +D      +VFDE+ D NVVS  ++I  F +     EA+ +F  ML   + P E T
Sbjct:   200 CGNVND----AQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255

Query:   111 FGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
               SVI +  +L  + +G+++H    K   L++++ + +A +D+Y K S I+EA  +F+  
Sbjct:   256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query:   170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                NV++ T+MI G       + A  +F +M  RNVVSWNA+I GY+Q G NEEA++LF 
Sbjct:   316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query:   230 EMLREGLVPNHSTLPCXXXXXXXXXXLGMGKSFHACAVKFLGKL------DVFVGNSLIS 283
              + RE + P H +             L +G   H   +K   K       D+FVGNSLI 
Sbjct:   376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query:   284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
              Y KCG +E+  LVF K+ ER+ V+WNA+I G+AQNG G EA+E F  M  +G +P+ +T
Sbjct:   436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495

Query:   344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYD 402
             ++G+L AC H G VE+G  YFS +   D G+    +HY CMVDLL R+G  +EAK  + +
Sbjct:   496 MIGVLSACGHAGFVEEGRHYFS-SMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEE 554

Query:   403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
             +P  P    W +LL  C++H N+ LG++ A ++L ++P +   YV+LSN  +  GKW++V
Sbjct:   555 MPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDV 614

Query:   463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              N+R+ M+++G+T+ PGCSWI+I+   HVF+  D++H    +I+++L     ++R
Sbjct:   615 MNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 7.9e-91, Sum P(2) = 7.9e-91
 Identities = 136/330 (41%), Positives = 209/330 (63%)

Query:   189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCXXX 248
             + E++   F++    + ++WNA++ G+ Q+G NEEA+ +F+ M REG+  N+ T      
Sbjct:   641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700

Query:   249 XXXXXXXLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
                    +  GK  HA   K     +  V N+LIS YAKCGS+ D+   F +++ +N V+
Sbjct:   701 AASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 760

Query:   309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
             WNA+I  Y+++G G EA++ F++M  + +RPN VTL+G+L AC+H GLV+KG +YF    
Sbjct:   761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820

Query:   369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
              E     KPEHY C+VD+L+R+G    AKEF+ ++P  P    W+ LL  C +H N+E+G
Sbjct:   821 SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880

Query:   429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
             EFAA  +L L+PED ++YV+LSN  +V+ KWD     R++MKEKG+ + PG SWIE+K+ 
Sbjct:   881 EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940

Query:   489 VHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
             +H F  GD+NH + DEI+   +  T++  E
Sbjct:   941 IHSFYVGDQNHPLADEIHEYFQDLTKRASE 970

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 126/314 (40%), Positives = 191/314 (60%)

Query:   192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCXXXXXX 251
             DA K F  +  R+V  W ++I GY Q   NEEA+ L+  M   G++PN  T+        
Sbjct:   375 DARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434

Query:   252 XXXXLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
                 L +GK  H   +K    L+V +G++L + Y+KCGS+ED  LVF +   +++V+WNA
Sbjct:   435 SLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNA 494

Query:   312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
             +I G + NG+G+EA+E FE M   G+ P+ VT + ++ AC+H G VE+G+ YF+    + 
Sbjct:   495 MISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMS-DQ 553

Query:   372 PGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
              G+  K +HYACMVDLLSR+G+ KEAKEF+     D G+  W+ LL  C+ H   ELG +
Sbjct:   554 IGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVY 613

Query:   431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
             A  +++AL   + S+YV LS   +  G+  +V  + + M+  G+++  GCSWIE+K++ H
Sbjct:   614 AGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYH 673

Query:   491 VFVTGDRNHHMNDE 504
             VFV GD  H M +E
Sbjct:   674 VFVVGDTMHPMIEE 687

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
 Identities = 134/344 (38%), Positives = 208/344 (60%)

Query:   189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-----------REGLV 237
             + + A+++F +M  R++V+WN MI GY  +  +E+A+ L  +M            R  L 
Sbjct:   455 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514

Query:   238 PNHSTLPCXXXXXXXXXXLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
             PN  TL            L  GK  HA A+K     DV VG++L+  YAKCG ++ S  V
Sbjct:   515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 574

Query:   298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
             FD++ ++N++TWN +I  Y  +G G+EAI+    M + G++PN VT + +  AC+H+G+V
Sbjct:   575 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634

Query:   358 EKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPG-IGFWKA 414
             ++G   F   K  D G+ +P  +HYAC+VDLL R+GR KEA + +  +P D    G W +
Sbjct:   635 DEGLRIFYVMK-PDYGV-EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query:   415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
             LLG  +IH+N+E+GE AA+ ++ L+P   S YV+L+N  S AG WD  + +RR MKE+G+
Sbjct:   693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query:   475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
              + PGCSWIE   +VH FV GD +H  ++++   L +  E++R+
Sbjct:   753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRK 796

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
 Identities = 126/327 (38%), Positives = 186/327 (56%)

Query:   191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCXXXXX 250
             +D+  +F EM  +++V WN+M  GY Q   NEEA+NLF+E+      P+  T        
Sbjct:   506 KDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAA 565

Query:   251 XXXXXLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
                  + +G+ FH   +K   + + ++ N+L+  YAKCGS ED+   FD    R++V WN
Sbjct:   566 GNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWN 625

Query:   311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
             +VI  YA +G G++A++  E+M   GI PN +T +G+L AC+H GLVE G   F +  L 
Sbjct:   626 SVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQF-ELMLR 684

Query:   371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                  + EHY CMV LL R+GR  +A+E +  +P  P    W++LL GC    NVEL E 
Sbjct:   685 FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEH 744

Query:   431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
             AA   +  DP+D  S+ MLSN  +  G W     +R  MK +G+ + PG SWI I  +VH
Sbjct:   745 AAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVH 804

Query:   491 VFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             +F++ D++H   ++IY VL     QIR
Sbjct:   805 IFLSKDKSHCKANQIYEVLDDLLVQIR 831

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
 Identities = 157/456 (34%), Positives = 266/456 (58%)

Query:    70 DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
             + N+VS   I+  F +  +++EA+ +F ++  L   P + T  SV+PS    E LN+G+ 
Sbjct:   214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query:   130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
             +H +  K GL  +  V SA++D+Y K   +     +F              I GL +   
Sbjct:   274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query:   190 FEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
              + AL++F+    +    NVVSW ++I G +Q G++ EA+ LF EM   G+ PNH T+P 
Sbjct:   334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393

Query:   246 XXXXXXXXXXLGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
                       LG G+S H  AV+ +  LD V VG++LI  YAKCG +  S +VF+ +  +
Sbjct:   394 MLPACGNIAALGHGRSTHGFAVR-VHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query:   305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
             N+V WN+++ G++ +G+ +E +  FE +    ++P+ ++   LL AC   GL ++G+ YF
Sbjct:   453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query:   365 SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                  E+ G +KP  EHY+CMV+LL R+G+ +EA + + ++PF+P    W ALL  C++ 
Sbjct:   513 KMMS-EEYG-IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQ 570

Query:   423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
             +NV+L E AA ++  L+PE+  +YV+LSN  +  G W  V +IR +M+  G+ + PGCSW
Sbjct:   571 NNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630

Query:   483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
             I++K++V+  + GD++H   D+I   +   ++++R+
Sbjct:   631 IQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRK 666

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155740 AT5G65570 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 128/346 (36%), Positives = 201/346 (58%)

Query:   174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
             + S T+++   L+    +D+L++F+ + + N VSW ++I G  Q GR E A+  F +M+R
Sbjct:   302 LASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMR 361

Query:   234 EGLVPNHSTLPCXXXXXXXXXXLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             + + PN  TL               G+  H    K+    D + G+ LI  Y KCG  + 
Sbjct:   362 DSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDM 421

Query:   294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWACN 352
             + LVFD L+E ++++ N +I  YAQNG G EA++ FERM IN G++PN VT+L +L ACN
Sbjct:   422 ARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERM-INLGLQPNDVTVLSVLLACN 480

Query:   353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
             ++ LVE+G   F   + +D  ML  +HYACMVDLL R+GR +EA E L     +P +  W
Sbjct:   481 NSRLVEEGCELFDSFR-KDKIMLTNDHYACMVDLLGRAGRLEEA-EMLTTEVINPDLVLW 538

Query:   413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
             + LL  C++H  VE+ E   R+IL ++P D  + +++SN  +  GKW+ V  ++ +MK+ 
Sbjct:   539 RTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDM 598

Query:   473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
              + + P  SW+EI  + H F+ GD   H N E   +L +  E I++
Sbjct:   599 KLKKNPAMSWVEINKETHTFMAGDLFSHPNSE--QILENLEELIKK 642

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 166/459 (36%), Positives = 262/459 (57%)

Query:    65 FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALED 123
             F+++ + ++V+  ++I  F ++ +   A+ +FS+ML  ++  P  FT  SV+ +   LE 
Sbjct:   235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294

Query:   124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED--THNPNVVSYTTMI 181
             L +GKQ+H+     G   +  V +A++ +Y +   +E A R+ E   T +  +  +T ++
Sbjct:   295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query:   182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
              G +K      A  +F  +  R+VV+W AMI GY Q G   EA+NLF  M+  G  PN  
Sbjct:   355 DGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414

Query:   242 TLPCXXXXXXXXXXLGMGKSFHACAVKFLGKL-DVFVGNSLISFYAKCGSMEDSLLVFDK 300
             TL            L  GK  H  AVK  G++  V V N+LI+ YAK G++  +   FD 
Sbjct:   415 TLAAMLSVASSLASLSHGKQIHGSAVKS-GEIYSVSVSNALITMYAKAGNITSASRAFDL 473

Query:   301 LT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
             +  ER+ V+W ++I   AQ+G  EEA+E FE M + G+RP+ +T +G+  AC H GLV +
Sbjct:   474 IRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQ 533

Query:   360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             G  YF   K  D  +    HYACMVDL  R+G  +EA+EF+  +P +P +  W +LL  C
Sbjct:   534 GRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSAC 593

Query:   420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
             ++H N++LG+ AA R+L L+PE+  +Y  L+N  S  GKW+  + IR+ MK+  + +  G
Sbjct:   594 RVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQG 653

Query:   480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
              SWIE+K KVHVF   D  H   +EIY  ++   ++I++
Sbjct:   654 FSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKK 692

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 162/470 (34%), Positives = 279/470 (59%)

Query:    50 SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
             SCG       S  +VF  + + +VVS  ++I  F ++   ++A+ LF +M   +++ S  
Sbjct:   178 SCGD----LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHV 233

Query:   110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
             T   V+ +   + +L  G+Q+ ++  +  +  N+ + +A+LD+Y K  SIE+A R+F+  
Sbjct:   234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293

Query:   170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                + V++TTM+ G    E +E A ++   MP +++V+WNA+I  Y Q G+  EA+ +F 
Sbjct:   294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353

Query:   230 EM-LREGLVPNHSTLPCXXXXXXXXXXLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             E+ L++ +  N  TL            L +G+  H+   K   +++  V ++LI  Y+KC
Sbjct:   354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413

Query:   289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             G +E S  VF+ + +R++  W+A+I G A +G G EA++ F +M+   ++PNGVT   + 
Sbjct:   414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473

Query:   349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
              AC+HTGLV++  S F Q +  + G++  E HYAC+VD+L RSG  ++A +F+  +P  P
Sbjct:   474 CACSHTGLVDEAESLFHQME-SNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPP 532

Query:   408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
                 W ALLG C+IH+N+ L E A  R+L L+P +  ++V+LSN  +  GKW+NVS +R+
Sbjct:   533 STSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRK 592

Query:   468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              M+  G+ + PGCS IEI   +H F++GD  H M++++Y  L    E+++
Sbjct:   593 HMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 642

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 8.0e-80, Sum P(2) = 8.0e-80
 Identities = 116/321 (36%), Positives = 190/321 (59%)

Query:   192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCXXXXXX 251
             D+LK+F  M   + V+WN +I    + G     + +  +M +  +VP+ +T         
Sbjct:   461 DSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCA 520

Query:   252 XXXXLGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
                   +GK  H C ++F  + ++ +GN+LI  Y+KCG +E+S  VF++++ R++VTW  
Sbjct:   521 SLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTG 580

Query:   312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE- 370
             +I  Y   G GE+A+E F  M  +GI P+ V  + +++AC+H+GLV++G + F + K   
Sbjct:   581 MIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHY 640

Query:   371 --DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
               DP M+  EHYAC+VDLLSRS +  +A+EF+  +P  P    W ++L  C+   ++E  
Sbjct:   641 KIDP-MI--EHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETA 697

Query:   429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
             E  +RRI+ L+P+D    ++ SNA +   KWD VS IR+ +K+K +T+ PG SWIE+   
Sbjct:   698 ERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKN 757

Query:   489 VHVFVTGDRNHHMNDEIYAVL 509
             VHVF +GD +   ++ IY  L
Sbjct:   758 VHVFSSGDDSAPQSEAIYKSL 778

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIH2	PP414_ARATH	No assigned EC number	0.6097	0.8963	0.9032	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	521
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-109
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-106
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-49
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-38
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-36
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-31
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-10
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-08
pfam01535	31	pfam01535, PPR, PPR repeat	2e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-07
pfam01535	31	pfam01535, PPR, PPR repeat	8e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	4e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	5e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-04

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  341 bits (876), Expect = e-109
 Identities = 165/473 (34%), Positives = 249/473 (52%), Gaps = 39/473 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG   D      ++FDE+P+ N+ S  TIIG      +Y EA  LF  M         
Sbjct: 169 VKCGMLID----ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF  ++ +S  L     G+QLH    K G+  + FV  A++D+Y K   IE+A  VF+ 
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD- 283

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                          MP +  V+WN+M+ GY+  G +EEA+ L+
Sbjct: 284 ------------------------------GMPEKTTVAWNSMLAGYALHGYSEEALCLY 313

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM   G+  +  T    I   + +A L   K  HA  ++    LD+    +L+  Y+K 
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G MED+  VFD++  +N+++WNA+I GY  +GRG +A+E FERM   G+ PN VT L +L
Sbjct: 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            AC ++GL E+G+  F Q+  E+  + KP   HYACM++LL R G   EA   +   PF 
Sbjct: 434 SACRYSGLSEQGWEIF-QSMSENHRI-KPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P +  W ALL  C+IH N+ELG  AA ++  + PE +++YV+L N  + +G+    + + 
Sbjct: 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
             +K KG++  P C+WIE+K + H F +GDR H  + EIY  L    ++I E+
Sbjct: 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  337 bits (866), Expect = e-106
 Identities = 165/458 (36%), Positives = 252/458 (55%), Gaps = 37/458 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF  +   + VS T +I  + K    ++A+  ++ M   N+ P E T  SV+ +   L 
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL++G +LH  A + GL S V V +A++++Y K   I++A                    
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA-------------------- 443

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                      L++F  +P ++V+SW ++I G     R  EA+  F +ML   L PN  T
Sbjct: 444 -----------LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVT 491

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L  A+ A A I AL  GK  HA  ++     D F+ N+L+  Y +CG M  +   F+   
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SH 550

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+++V+WN ++ GY  +G+G  A+E F RM  +G+ P+ VT + LL AC+ +G+V +G  
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF    +E+   + P  +HYAC+VDLL R+G+  EA  F+  +P  P    W ALL  C+
Sbjct: 611 YFH--SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH +VELGE AA+ I  LDP  V  Y++L N  + AGKWD V+ +R+ M+E G+T  PGC
Sbjct: 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SW+E+K KVH F+T D +H    EI  VL    E+++ 
Sbjct: 729 SWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  180 bits (459), Expect = 5e-49
 Identities = 105/388 (27%), Positives = 185/388 (47%), Gaps = 34/388 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++P+ ++ S   ++G +AK  +++EA+ L+ RML   +RP  +TF  V+ +   + D
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+++HA   + G + +V V +A++ +Y+K                          CG
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVK--------------------------CG 236

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +   R      +F  MP R+ +SWNAMI GY + G   E + LF  M    + P+  T+
Sbjct: 237 DVVSAR-----LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I A   +    +G+  H   VK    +DV V NSLI  Y   GS  ++  VF ++  
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++ V+W A+I GY +NG  ++A+E +  M  + + P+ +T+  +L AC   G ++ G   
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411

Query: 364 FSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              A  E  G++     A  ++++ S+     +A E  +++P    I +   + G    +
Sbjct: 412 HELA--ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLS 450
              E   F  + +L L P  V+    LS
Sbjct: 470 RCFEALIFFRQMLLTLKPNSVTLIAALS 497

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  149 bits (378), Expect = 2e-38
 Identities = 89/318 (27%), Positives = 149/318 (46%), Gaps = 36/318 (11%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  V CG   D  S+   VFD +P  + +S   +I  + +     E + LF  M  L
Sbjct: 227 ALITMYVKCG---DVVSA-RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P   T  SVI +   L D  LG+++H +  K G   +V V ++++ +Y+ L S  EA
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            +VF      + VS+T                                MI GY + G  +
Sbjct: 343 EKVFSRMETKDAVSWTA-------------------------------MISGYEKNGLPD 371

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+  +  M ++ + P+  T+   + A A +  L +G   H  A +      V V N+LI
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+KC  ++ +L VF  + E+++++W ++I G   N R  EA+ FF +M +  ++PN V
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSV 490

Query: 343 TLLGLLWACNHTGLVEKG 360
           TL+  L AC   G +  G
Sbjct: 491 TLIAALSACARIGALMCG 508

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  144 bits (365), Expect = 1e-36
 Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 31/262 (11%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
           E+A+ L   M  L +   E  + ++         +  G ++ + A        V +G+A+
Sbjct: 68  EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           L ++++   +  A  VF                                +MP R++ SWN
Sbjct: 128 LSMFVRFGELVHAWYVF-------------------------------GKMPERDLFSWN 156

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            ++GGY++ G  +EA+ L+  ML  G+ P+  T PC +     I  L  G+  HA  V+F
Sbjct: 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
             +LDV V N+LI+ Y KCG +  + LVFD++  R+ ++WNA+I GY +NG   E +E F
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276

Query: 330 ERMRINGIRPNGVTLLGLLWAC 351
             MR   + P+ +T+  ++ AC
Sbjct: 277 FTMRELSVDPDLMTITSVISAC 298

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  128 bits (322), Expect = 3e-31
 Identities = 90/355 (25%), Positives = 163/355 (45%), Gaps = 44/355 (12%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-----PSEFTFGSVIPSSTALEDLNLGK 128
           VS  + I +      + EA+ LF    +L        P+  T+ +++ +  AL+ +   K
Sbjct: 88  VSLCSQIEKLVACGRHREALELFE---ILEAGCPFTLPAS-TYDALVEACIALKSIRCVK 143

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
            ++      G + + ++ + +L +++K   + +A R+F++    N+ S+ T+I GL+   
Sbjct: 144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
            + +A  LF+EM       W            ++     F+ MLR               
Sbjct: 204 NYREAFALFREM-------WEDG---------SDAEPRTFVVMLR--------------- 232

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A+A + +   G+  H C +K     D FV  +LI  Y+KCG +ED+  VFD + E+  V 
Sbjct: 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WN+++ GYA +G  EEA+  +  MR +G+  +  T   ++   +   L+E  ++  + A 
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE--HAKQAHAG 350

Query: 369 LEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           L   G  L       +VDL S+ GR ++A+     +P    I  W AL+ G   H
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS-WNALIAGYGNH 404

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 36/143 (25%), Positives = 67/143 (46%)

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
           N+ +      G+ E+A+ L   M    +  +               A+  G    + A+ 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
               L V +GN+++S + + G +  +  VF K+ ER++ +WN ++ GYA+ G  +EA+  
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 329 FERMRINGIRPNGVTLLGLLWAC 351
           + RM   G+RP+  T   +L  C
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTC 197

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.0 bits (144), Expect = 1e-11
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQ 217
           P+VV+Y T+I G  K+ + E+ALKLF EM  R    NV +++ +I G  +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 57.8 bits (141), Expect = 4e-11
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
           ++VT+N +I GY + G+ EEA++ F  M+  GI+PN  T
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 11/213 (5%)

Query: 219 GRNEEAVNLFIEMLREGL---VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
           GR+ EA+ LF E+L  G    +P  ST    + A   + ++   K+ +        + D 
Sbjct: 101 GRHREALELF-EILEAGCPFTLPA-STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           ++ N ++  + KCG + D+  +FD++ ERN+ +W  +I G    G   EA   F  M  +
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFS-QAKLEDPGMLKPEHYAC-MVDLLSRSGRF 393
           G      T + +L A    G    G        K    G++     +C ++D+ S+ G  
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT---GVVGDTFVSCALIDMYSKCGDI 275

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           ++A+     +P    +  W ++L G  +H   E
Sbjct: 276 EDARCVFDGMPEKTTVA-WNSMLAGYALHGYSE 307

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 54.7 bits (133), Expect = 5e-10
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           +VV++N +I GY + G+ EEA+ LF EM + G+ PN  T
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 48.2 bits (116), Expect = 6e-08
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           VT+N +I G  + GR EEA+E F+ M+  GI P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           VT+N++I GY + G+ EEA+E F+ M+  G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           +VV+  T+I  + K+   EEA+ LF+ M    I+P+ +T+  +I
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 45.1 bits (108), Expect = 8e-07
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           V++N++I GY + G+ EEA+ LF EM  +G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.9 bits (105), Expect = 2e-06
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           P+VV+Y T+I GL +  R ++A++L  EM 
Sbjct: 5   PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.1 bits (103), Expect = 4e-06
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           + ++VT+N +I G  + GR +EA+E  + M 
Sbjct: 4   KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           V+Y T+I GL K  R E+AL+LF+EM  R + 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
           V+Y ++I G  K  + E+AL+LF+EM  + V
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           V++N +I G  + GR EEA+ LF EM   G+ P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 47/233 (20%), Positives = 96/233 (41%), Gaps = 11/233 (4%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS----WNAMIGGYSQTGRNEEAVNL 227
           P+ ++   ++       + + A +++Q +   N+      +   +   SQ G  + A+++
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           + +M ++G+ P+       +  A +   L         A K   KL     +SL+   + 
Sbjct: 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696

Query: 288 CGSMEDSLLVFDKLT----ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
             + + +L +++ +        + T NA+I    +  +  +A+E    M+  G+ PN +T
Sbjct: 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
              LL A       + G    SQAK ED          C+  L  R  RF++A
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLR--RFEKA 806

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 40/203 (19%)

Query: 280 SLISFYAKCGSMEDSLLVFDKLT----ERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           +LIS  AK G ++    VF ++     E N+ T+ A+I G A+ G+  +A   +  MR  
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE-DPGMLKPEH--YACMVDLLSRSGR 392
            ++P+ V    L+ AC  +G V++ +   ++ K E  P  + P+H     ++   + +G+
Sbjct: 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP--IDPDHITVGALMKACANAGQ 594

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
              AKE +Y +                 IH     G           PE    Y +  N+
Sbjct: 595 VDRAKE-VYQM-----------------IHEYNIKGT----------PE---VYTIAVNS 623

Query: 453 LSVAGKWDNVSNIRREMKEKGMT 475
            S  G WD   +I  +MK+KG+ 
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVK 646

Length = 1060

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 42.1 bits (97), Expect = 4e-04
 Identities = 48/220 (21%), Positives = 75/220 (34%), Gaps = 11/220 (5%)

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
           E  E+AL+L              +     + GR EEA+ L  + L   L+PN +     +
Sbjct: 44  ELLEEALELLPN--SDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNL 101

Query: 248 IAAANI-----AALGMGKSFHACAVKFLGKLDVFVGNSL--ISFYAKCGSMEDSLLVFDK 300
                       AL + +   A          +    +L  +  Y +   + +  L  D 
Sbjct: 102 GLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDP 161

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
                     A+       GR EEA+E  E+        +   LL L       G  E+ 
Sbjct: 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
             Y+ +A   DP     E    +  LL   GR++EA E L
Sbjct: 222 LEYYEKALELDPDN--AEALYNLALLLLELGRYEEALEAL 259

Length = 291

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           + T+NA++   A+ G  + A+   E M+ +G++P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           +VV++N +I G  + GR +EAV L  EM
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHN----PNVVSYTTMICGLLK 186
           +V   + ++D Y K   +EEA ++F +       PNV +Y+ +I GL K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	521
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.8
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.79
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.78
KOG2003	840	consensus TPR repeat-containing protein [General f	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.73
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.7
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.67
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.67
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.65
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.65
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.65
KOG1126	638	consensus DNA-binding cell division cycle control	99.64
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.62
KOG1126	638	consensus DNA-binding cell division cycle control	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.6
KOG2076	895	consensus RNA polymerase III transcription factor	99.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.58
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.57
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.54
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.44
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.41
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.38
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.35
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.35
KOG1129	478	consensus TPR repeat-containing protein [General f	99.34
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.32
PRK12370	553	invasion protein regulator; Provisional	99.31
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.31
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.3
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.3
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.28
PF13041	50	PPR_2: PPR repeat family	99.28
PRK12370	553	invasion protein regulator; Provisional	99.27
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.26
PF13041	50	PPR_2: PPR repeat family	99.25
KOG1129	478	consensus TPR repeat-containing protein [General f	99.24
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.23
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.22
PRK11189	296	lipoprotein NlpI; Provisional	99.21
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.2
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.19
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.17
PRK11189	296	lipoprotein NlpI; Provisional	99.14
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.12
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.11
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.07
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.05
KOG1125	579	consensus TPR repeat-containing protein [General f	99.04
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.01
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.0
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.98
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.95
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.95
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.93
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.93
PRK04841	903	transcriptional regulator MalT; Provisional	98.91
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.9
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.86
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.85
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.82
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.81
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.78
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.77
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.71
PRK15359	144	type III secretion system chaperone protein SscB;	98.69
PRK04841	903	transcriptional regulator MalT; Provisional	98.68
PLN02789	320	farnesyltranstransferase	98.67
PRK15359	144	type III secretion system chaperone protein SscB;	98.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.65
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.65
KOG1125	579	consensus TPR repeat-containing protein [General f	98.63
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.62
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.58
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.57
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.5
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.5
PF12854	34	PPR_1: PPR repeat	98.49
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.46
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.45
PF12854	34	PPR_1: PPR repeat	98.41
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.31
PLN02789	320	farnesyltranstransferase	98.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.28
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.27
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.27
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.25
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.22
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.2
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.2
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.08
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.04
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.03
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.01
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.98
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.96
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.91
KOG0553	304	consensus TPR repeat-containing protein [General f	97.89
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.89
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.86
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.84
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.81
PF13371	73	TPR_9: Tetratricopeptide repeat	97.8
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.79
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.79
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.78
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.78
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.76
PRK15331	165	chaperone protein SicA; Provisional	97.76
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.72
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.67
KOG0553	304	consensus TPR repeat-containing protein [General f	97.65
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.63
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.6
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.59
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.56
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.56
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.53
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.53
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.48
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.44
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.44
PRK10803	263	tol-pal system protein YbgF; Provisional	97.4
PF13431	34	TPR_17: Tetratricopeptide repeat	97.4
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.36
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.36
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.34
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.34
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.32
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.31
PF13428	44	TPR_14: Tetratricopeptide repeat	97.31
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.3
PF12688	120	TPR_5: Tetratrico peptide repeat	97.3
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.27
PF12688	120	TPR_5: Tetratrico peptide repeat	97.22
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.19
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.12
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.12
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.09
PRK10803	263	tol-pal system protein YbgF; Provisional	97.08
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.08
KOG1258	577	consensus mRNA processing protein [RNA processing	97.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.05
PF13371	73	TPR_9: Tetratricopeptide repeat	97.01
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.0
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.99
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.99
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.95
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.91
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.8
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.76
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.67
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.62
PF13512	142	TPR_18: Tetratricopeptide repeat	96.59
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.49
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.47
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.36
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.35
PRK11619	644	lytic murein transglycosylase; Provisional	96.3
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.3
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.25
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.21
PRK11906	458	transcriptional regulator; Provisional	96.21
PF13512	142	TPR_18: Tetratricopeptide repeat	96.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.14
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.14
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.13
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.11
KOG3941	406	consensus Intermediate in Toll signal transduction	96.07
PRK15331	165	chaperone protein SicA; Provisional	95.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.98
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.89
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.87
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.8
KOG4555	175	consensus TPR repeat-containing protein [Function	95.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.68
KOG1258	577	consensus mRNA processing protein [RNA processing	95.63
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.59
PRK11906	458	transcriptional regulator; Provisional	95.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.46
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.43
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.37
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.35
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.27
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.17
PF13428	44	TPR_14: Tetratricopeptide repeat	95.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.07
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.96
KOG4555	175	consensus TPR repeat-containing protein [Function	94.94
KOG1585	308	consensus Protein required for fusion of vesicles	94.89
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.77
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.76
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	94.6
KOG1585	308	consensus Protein required for fusion of vesicles	94.52
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.47
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.4
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.33
KOG4234	271	consensus TPR repeat-containing protein [General f	94.24
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.14
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.98
KOG3941	406	consensus Intermediate in Toll signal transduction	93.96
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.92
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.78
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.68
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.68
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.67
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.56
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.52
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.33
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.29
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.22
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.16
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.15
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.93
KOG4234	271	consensus TPR repeat-containing protein [General f	92.67
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.58
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.51
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.36
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.2
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.12
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	91.96
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.9
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.86
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.81
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.77
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.69
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.67
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.61
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.49
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.39
PRK11619	644	lytic murein transglycosylase; Provisional	91.38
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	91.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.19
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.18
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.17
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.79
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.71
PRK09687	280	putative lyase; Provisional	90.38
KOG1586	288	consensus Protein required for fusion of vesicles	90.36
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.3
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.1
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.97
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.96
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.86
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	89.69
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.6
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	89.54
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.3
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.08
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.97
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.47
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	88.44
KOG4648	536	consensus Uncharacterized conserved protein, conta	88.09
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.02
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	87.87
PRK09687	280	putative lyase; Provisional	87.87
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.86
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.47
PF13431	34	TPR_17: Tetratricopeptide repeat	87.46
PRK10941	269	hypothetical protein; Provisional	87.45
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.32
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.3
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	87.25
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.09
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.83
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.7
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	86.55
KOG3364	149	consensus Membrane protein involved in organellar	85.88
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	85.82
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	85.55
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.44
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.91
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.72
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	84.53
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.49
KOG1586	288	consensus Protein required for fusion of vesicles	84.16
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.59
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.1
COG1747	711	Uncharacterized N-terminal domain of the transcrip	82.09
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	81.26
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.11
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	80.86
KOG2300	629	consensus Uncharacterized conserved protein [Funct	80.84
PRK12798	421	chemotaxis protein; Reviewed	80.39

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.7e-71  Score=587.04  Aligned_cols=491  Identities=35%  Similarity=0.636  Sum_probs=459.6

Q ss_pred             CCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHh
Q 009967           26 NYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM   99 (521)
Q Consensus        26 ~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m   99 (521)
                      +.....+++|..+.+.| +.++      |+.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|
T Consensus       201 ~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M  279 (857)
T PLN03077        201 PDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM  279 (857)
T ss_pred             cchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence            35555678999999999 8887      9999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHH
Q 009967          100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT  179 (521)
Q Consensus       100 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  179 (521)
                      .+.|+.||..||+.++.+|...|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|..||..+|+.
T Consensus       280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~  359 (857)
T PLN03077        280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA  359 (857)
T ss_pred             HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHcCCCHHHHHHHHhhC-----------------------------------------------------------
Q 009967          180 MICGLLKRERFEDALKLFQEM-----------------------------------------------------------  200 (521)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~~-----------------------------------------------------------  200 (521)
                      ++.+|++.|++++|.++|++|                                                           
T Consensus       360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~  439 (857)
T PLN03077        360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC  439 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence            887777776666666666654                                                           


Q ss_pred             -----------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 009967          201 -----------PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF  269 (521)
Q Consensus       201 -----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  269 (521)
                                 .++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+.
T Consensus       440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~  518 (857)
T PLN03077        440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT  518 (857)
T ss_pred             HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence                       345555666666666677777777777777765 58899999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009967          270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW  349 (521)
Q Consensus       270 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  349 (521)
                      |..++..++++|+++|++.|++++|.++|+.+ ++|..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.
T Consensus       519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~  597 (857)
T PLN03077        519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC  597 (857)
T ss_pred             CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009967          350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      +|.+.|++++|.++|+.|.+..++.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++
T Consensus       598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e  677 (857)
T PLN03077        598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE  677 (857)
T ss_pred             HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence            99999999999999999987899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHH
Q 009967          430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL  509 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  509 (521)
                      ...+++.++.|+++..|..+++.|...|+|++|.++.+.|++.|+.++||+||+++++.+|.|..++++||...+|+.+|
T Consensus       678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l  757 (857)
T PLN03077        678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL  757 (857)
T ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 009967          510 RSCTEQIREF  519 (521)
Q Consensus       510 ~~~~~~~~~~  519 (521)
                      +.+..++++.
T Consensus       758 ~~l~~~~~~~  767 (857)
T PLN03077        758 EGFYEKMKAS  767 (857)
T ss_pred             HHHHHHHHhC
Confidence            9999999864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.2e-70  Score=565.23  Aligned_cols=490  Identities=29%  Similarity=0.477  Sum_probs=455.4

Q ss_pred             CCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCC----CCCcccHHHHHHHHHhcCChHHHHHH
Q 009967           26 NYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVP----DLNVVSATTIIGRFAKQHHYEEAIYL   95 (521)
Q Consensus        26 ~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~   95 (521)
                      +...++..++..+...+.+.++      ++.+|++.|+++.|.+++..+.    .||..+||.++..|++.|++++|.++
T Consensus       101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l  180 (697)
T PLN03081        101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL  180 (697)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence            3445555666666654324444      8888888888888888887764    47888888888888888888888888


Q ss_pred             HHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----
Q 009967           96 FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----  171 (521)
Q Consensus        96 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----  171 (521)
                      |++|.    .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+    
T Consensus       181 f~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~  256 (697)
T PLN03081        181 FDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV  256 (697)
T ss_pred             HhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence            88885    4788888888888888888888888888888888888888888888888888888888888766653    


Q ss_pred             CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009967          172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA  251 (521)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  251 (521)
                      +|..+|+.++.+|++.|++++|.++|++|.++|+.+||.++.+|++.|++++|+++|++|...|+.||..||+.++.+|+
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~  336 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS  336 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      +.|+++.|.+++..+.+.|..|+..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++
T Consensus       337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~  416 (697)
T PLN03081        337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER  416 (697)
T ss_pred             hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH
Q 009967          332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF  411 (521)
Q Consensus       332 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  411 (521)
                      |.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..++.|+..+|+.++++|++.|++++|.+++++++..|+..+
T Consensus       417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~  496 (697)
T PLN03081        417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM  496 (697)
T ss_pred             HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence            99999999999999999999999999999999999987789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEE
Q 009967          412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV  491 (521)
Q Consensus       412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~  491 (521)
                      |+.|+.+|...|+++.|..+++++.+..|++..+|..++++|.+.|++++|.+++++|.+.|+.+.|++||+.+.+.+|.
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~  576 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS  576 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 009967          492 FVTGDRNHHMNDEIYAVLRSCTEQIREF  519 (521)
Q Consensus       492 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~  519 (521)
                      |++++.+||...+|+..+..+..++++.
T Consensus       577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~  604 (697)
T PLN03081        577 FFSGDRLHPQSREIYQKLDELMKEISEY  604 (697)
T ss_pred             EccCCCCCccHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999863

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.4e-61  Score=507.16  Aligned_cols=449  Identities=25%  Similarity=0.431  Sum_probs=411.9

Q ss_pred             CCCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 009967           25 PNYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR   98 (521)
Q Consensus        25 ~~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   98 (521)
                      .+.+....++|..+.+.| ..++      ++..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++
T Consensus        99 ~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~  177 (857)
T PLN03077         99 KRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR  177 (857)
T ss_pred             CCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHH
Confidence            345566678888888887 6555      899999999999999999999999999999999999999999999999999


Q ss_pred             hHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHH
Q 009967           99 MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT  178 (521)
Q Consensus        99 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  178 (521)
                      |...|+.||..||+.++++|...++++.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|..+|..+|+
T Consensus       178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n  257 (857)
T PLN03077        178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN  257 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988776666666


Q ss_pred             HHHHHHH----------------------------------------------------------------------cCC
Q 009967          179 TMICGLL----------------------------------------------------------------------KRE  188 (521)
Q Consensus       179 ~li~~~~----------------------------------------------------------------------~~g  188 (521)
                      ++|.+|+                                                                      +.|
T Consensus       258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g  337 (857)
T PLN03077        258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG  337 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence            6555554                                                                      455


Q ss_pred             CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967          189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       189 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      ++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+
T Consensus       338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~  417 (857)
T PLN03077        338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER  417 (857)
T ss_pred             CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            66666667777777888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967          269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL  348 (521)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  348 (521)
                      .|..|+..++++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|..+|++|.. +++||..||..++
T Consensus       418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL  496 (857)
T PLN03077        418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL  496 (857)
T ss_pred             hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999986 5899999999999


Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      .+|++.|+++.+.+++..+. +.|+.++..++++|+++|++.|++++|.++|+.+  .||..+|+.++.+|.+.|+.++|
T Consensus       497 ~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A  573 (857)
T PLN03077        497 SACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMA  573 (857)
T ss_pred             HHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHH
Confidence            99999999999999999996 8899999999999999999999999999999998  78999999999999999999999


Q ss_pred             HHHHHHHHhc--CCCCchHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCccCCc
Q 009967          429 EFAARRILAL--DPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-EKGMTRVPG  479 (521)
Q Consensus       429 ~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~  479 (521)
                      +++|++|.+.  .| |..+|..++.+|.+.|++++|.++|++|. +.|+.|+..
T Consensus       574 ~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~  626 (857)
T PLN03077        574 VELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK  626 (857)
T ss_pred             HHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence            9999999884  35 78889999999999999999999999998 678887643

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.2e-59  Score=487.81  Aligned_cols=453  Identities=11%  Similarity=0.150  Sum_probs=364.8

Q ss_pred             CCCCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 009967           24 APNYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS   97 (521)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   97 (521)
                      ..+...++.++++.|.+.|.+.++      ++..|.+.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+
T Consensus       382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~  461 (1060)
T PLN03218        382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR  461 (1060)
T ss_pred             HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            356788888999999988844444      67778888888888888888888888888888888888888888888888


Q ss_pred             HhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CC
Q 009967           98 RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----PN  173 (521)
Q Consensus        98 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~  173 (521)
                      +|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+    ||
T Consensus       462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD  541 (1060)
T PLN03218        462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD  541 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888854    88


Q ss_pred             chhHHHHHHHHHcCCCHHHHHHHHhhCC------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 009967          174 VVSYTTMICGLLKRERFEDALKLFQEMP------HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI  247 (521)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  247 (521)
                      ..+|+.+|.+|++.|++++|.++|++|.      .||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI  621 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV  621 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence            8888888888888888888888888884      3788888888888888888888888888888888888888888888


Q ss_pred             HHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChH
Q 009967          248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGE  323 (521)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~  323 (521)
                      .+|++.|+++.|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+    ||..+|+.+|.+|++.|+++
T Consensus       622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e  701 (1060)
T PLN03218        622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK  701 (1060)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence            88888888888888888888888888888888888888888888888888888864    77788888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      +|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. ..|+.||..+|+.++.+|++.|++++|.+++..|
T Consensus       702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M  780 (1060)
T PLN03218        702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSILLVASERKDDADVGLDLLSQA  780 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888885 6778888888888888888888888888888776


Q ss_pred             C---CCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHhcC--C---------------
Q 009967          404 P---FDPGIGFWKALLGGCQI-----------------------HSNVELGEFAARRILALD--P---------------  440 (521)
Q Consensus       404 ~---~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~~--p---------------  440 (521)
                      .   ..||..+|+.++..|..                       .+..+.|..+|++|++.+  |               
T Consensus       781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~  860 (1060)
T PLN03218        781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP  860 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Confidence            3   57787788777755431                       123456777777777633  3               


Q ss_pred             -------------------CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 009967          441 -------------------EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG  479 (521)
Q Consensus       441 -------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  479 (521)
                                         ++..+|+.++.++.+  ..++|..++++|.+.|+.|+..
T Consensus       861 ~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        861 HDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             ccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence                               133445555555421  1246778888888888777653

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-57  Score=473.63  Aligned_cols=427  Identities=16%  Similarity=0.195  Sum_probs=398.9

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCc-----ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNV-----VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE  122 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  122 (521)
                      ++..|++.|++++|+++|+.|..++.     ..++.++..|.+.|.+++|+.+|+.|..    ||..+|+.++.+|++.|
T Consensus       376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g  451 (1060)
T PLN03218        376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ  451 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence            78888899999999999999986554     4556777889999999999999999974    99999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCchhHHHHHHHHHcCCCHHHHHHHHh
Q 009967          123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----PNVVSYTTMICGLLKRERFEDALKLFQ  198 (521)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~  198 (521)
                      +++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+    ||..+|+.+|.+|++.|++++|.++|+
T Consensus       452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~  531 (1060)
T PLN03218        452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG  531 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999984    899999999999999999999999999


Q ss_pred             hCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967          199 EMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK  272 (521)
Q Consensus       199 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  272 (521)
                      +|.+    ||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.
T Consensus       532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~  611 (1060)
T PLN03218        532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK  611 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            9964    8999999999999999999999999999986  578999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967          273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL  348 (521)
Q Consensus       273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  348 (521)
                      |+..+|+.++.+|++.|++++|.++|++|.+    ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++
T Consensus       612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI  691 (1060)
T PLN03218        612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM  691 (1060)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            9999999999999999999999999999984    899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP---FDPGIGFWKALLGGCQIHSNV  425 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~  425 (521)
                      .+|++.|++++|.++|++|. ..++.|+..+|+.|+.+|++.|++++|.++|++|.   ..||..+|+.++.+|.+.|++
T Consensus       692 ~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        692 GACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA  770 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999996 77899999999999999999999999999999874   589999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC-CCchHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHhCCCccCCc
Q 009967          426 ELGEFAARRILALDP-EDVSSYVMLSNALSV----A-------------------GKWDNVSNIRREMKEKGMTRVPG  479 (521)
Q Consensus       426 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~~~~~  479 (521)
                      ++|.+++++|.+.+. ++..+|+.++..|.+    +                   +..++|..+|++|.+.|+.|+..
T Consensus       771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~  848 (1060)
T PLN03218        771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME  848 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence            999999999998542 277888888765432    1                   23468999999999999999865

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.6e-55  Score=453.30  Aligned_cols=447  Identities=19%  Similarity=0.278  Sum_probs=406.0

Q ss_pred             CCCCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 009967           24 APNYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS   97 (521)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   97 (521)
                      ..+......++|..+.+.| +.++      |+.+|++.|++++|.++|++|++||..+||.++.+|++.|++++|+++|+
T Consensus       135 ~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~  213 (697)
T PLN03081        135 ALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR  213 (697)
T ss_pred             hCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence            3456667789999999999 8888      99999999999999999999999999999999999999999999999999


Q ss_pred             HhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhH
Q 009967           98 RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY  177 (521)
Q Consensus        98 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  177 (521)
                      +|.+.|+.|+..+|+.++.+|...|+.+.+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|++|..+|..+|
T Consensus       214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~  293 (697)
T PLN03081        214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW  293 (697)
T ss_pred             HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 009967          178 TTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI  253 (521)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  253 (521)
                      +.++.+|++.|+.++|.++|++|.    .||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.
T Consensus       294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~  373 (697)
T PLN03081        294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW  373 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence            999999999999999999999995    4899999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967          254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFF  329 (521)
Q Consensus       254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~  329 (521)
                      |+++.|..+|+.|.+    ||..+||+++.+|++.|+.++|.++|++|.+    ||..||+.++.+|++.|..++|.++|
T Consensus       374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f  449 (697)
T PLN03081        374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF  449 (697)
T ss_pred             CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            999999999999864    6899999999999999999999999999974    99999999999999999999999999


Q ss_pred             HHHHH-CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC
Q 009967          330 ERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP  407 (521)
Q Consensus       330 ~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~  407 (521)
                      +.|.+ .|+.|+..+|+.++.++++.|++++|.++++++    +..|+..+|+.|+.+|...|+++.|..+++++. ..|
T Consensus       450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p  525 (697)
T PLN03081        450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP  525 (697)
T ss_pred             HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            99986 699999999999999999999999999999766    577999999999999999999999999998853 455


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHH---HH--------HhcCChHHHHHHHHHHHhCC
Q 009967          408 -GIGFWKALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSN---AL--------SVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       408 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~---~~--------~~~g~~~~A~~~~~~m~~~g  473 (521)
                       +..+|..++..|.+.|++++|.+++++|.+.+-.  ...+|..+..   .+        ....-++...++..+|.+.|
T Consensus       526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g  605 (697)
T PLN03081        526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG  605 (697)
T ss_pred             CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence             4669999999999999999999999999986421  1111111100   00        00112455667888899999


Q ss_pred             CccCCc
Q 009967          474 MTRVPG  479 (521)
Q Consensus       474 ~~~~~~  479 (521)
                      ..|+..
T Consensus       606 y~~~~~  611 (697)
T PLN03081        606 YVAEEN  611 (697)
T ss_pred             CCCCcc
Confidence            888754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.8e-29  Score=267.81  Aligned_cols=418  Identities=12%  Similarity=0.052  Sum_probs=308.8

Q ss_pred             hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      ++..+.+.|++++|.++++.+..   .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus       437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~  515 (899)
T TIGR02917       437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP  515 (899)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence            77778888888888888877652   355678888888888888888888888887654 34555666777777888888


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967          125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMP  201 (521)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  201 (521)
                      ++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++..   .+...+..++..+.+.|++++|..+++.+.
T Consensus       516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  594 (899)
T TIGR02917       516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA  594 (899)
T ss_pred             HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            88888888887764 55677777888888888888888888887754   344566777788888888888888888775


Q ss_pred             C---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHH
Q 009967          202 H---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG  278 (521)
Q Consensus       202 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  278 (521)
                      +   .+..+|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|+++.|..+++.+.+..+. +...+
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  672 (899)
T TIGR02917       595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQ  672 (899)
T ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence            4   356778888888888888888888888877643 234556667777778888888888888887776543 56677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967          279 NSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG  355 (521)
Q Consensus       279 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  355 (521)
                      ..++..+...|++++|.++++.+.+   .+...+..+...+...|++++|...|+++...+  |+..++..+..++...|
T Consensus       673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g  750 (899)
T TIGR02917       673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG  750 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence            7777778888888888888877764   345567777777777888888888888777643  55566666777777778


Q ss_pred             cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967          356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAAR  433 (521)
Q Consensus       356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  433 (521)
                      ++++|.+.++++....+  .++..+..+...|...|++++|.+.|+++.  .+++...+..++..+...|+ ++|+..++
T Consensus       751 ~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~  827 (899)
T TIGR02917       751 NTAEAVKTLEAWLKTHP--NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE  827 (899)
T ss_pred             CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence            88888777777764443  456677777777777788888877777743  23455567777777777777 66777777


Q ss_pred             HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       434 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      ++.+..|+++.++..++.++...|++++|..+++++.+.+.
T Consensus       828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            77777777777777777777777777777777777776554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.4e-28  Score=265.90  Aligned_cols=440  Identities=10%  Similarity=-0.008  Sum_probs=298.9

Q ss_pred             CCCCccchHHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHH
Q 009967           24 APNYLIETQKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLF   96 (521)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~   96 (521)
                      ..+........+..+.+...-...    +...+...|++++|.+.|+....   .+...+..++..+.+.|++++|..++
T Consensus       375 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  454 (899)
T TIGR02917       375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA  454 (899)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence            344445555555554442200111    66666777777777777766442   22345556667777777777777777


Q ss_pred             HHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CC
Q 009967           97 SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PN  173 (521)
Q Consensus        97 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~  173 (521)
                      +.+.... +++..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++..   .+
T Consensus       455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  532 (899)
T TIGR02917       455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN  532 (899)
T ss_pred             HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc
Confidence            7776543 4556677777777777777777777777777643 44555666677777777777777777777654   34


Q ss_pred             chhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009967          174 VVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA  250 (521)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  250 (521)
                      ..++..+...+.+.|+.++|...++++.+   .+...+..++..|...|++++|..+++.+.... +.+..++..+..++
T Consensus       533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  611 (899)
T TIGR02917       533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ  611 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            55667777777777777777777777643   345566677777777777777777777776543 34556677777777


Q ss_pred             HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 009967          251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIE  327 (521)
Q Consensus       251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~  327 (521)
                      ...|+++.|...++.+.+..+. +...+..+..++.+.|++++|..+|+++.+   .+..++..++..+...|++++|..
T Consensus       612 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  690 (899)
T TIGR02917       612 LAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK  690 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777777766533 556666777777777777777777777654   345577777777777777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--C
Q 009967          328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--F  405 (521)
Q Consensus       328 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~  405 (521)
                      +++.+.+.+ +++...+..+...+...|++++|...|+.+....   |+..++..++.++.+.|++++|.+.++++.  .
T Consensus       691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  766 (899)
T TIGR02917       691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH  766 (899)
T ss_pred             HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            777777654 3455566666677777777777777777775332   444566667777777777777777776642  2


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +.+...+..+...|...|++++|...|+++++..|+++.++..++..+...|+ .+|+.+++++.+.
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            34555677777777777777777777777777777777777777777777777 6677777776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=1.1e-20  Score=205.54  Aligned_cols=414  Identities=13%  Similarity=0.068  Sum_probs=286.9

Q ss_pred             hhhhcccCCChhHHHHHhccCCC--CCcccH-----------------HHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD--LNVVSA-----------------TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE  108 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~  108 (521)
                      ++..+.+.|+.++|.+.++++.+  |+...+                 ......+.+.|++++|+..|+.+.+.+ +|+.
T Consensus        68 ~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~  146 (1157)
T PRK11447         68 RFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL  146 (1157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh
Confidence            67777888888888888887653  332211                 223345777888888888888887653 3333


Q ss_pred             hh-HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-CCc-----h------
Q 009967          109 FT-FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNV-----V------  175 (521)
Q Consensus       109 ~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~------  175 (521)
                      .. ...+.......|+.++|++.++.+.+.. +.+...+..+...+...|+.++|+..++++.. +..     .      
T Consensus       147 ~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l  225 (1157)
T PRK11447        147 DLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI  225 (1157)
T ss_pred             HHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence            21 1111222234588888888888888764 55666777888888888888888888876532 100     0      


Q ss_pred             -----------hHH----------------------------------HHHHHHHcCCCHHHHHHHHhhCCC---CChhH
Q 009967          176 -----------SYT----------------------------------TMICGLLKRERFEDALKLFQEMPH---RNVVS  207 (521)
Q Consensus       176 -----------~~~----------------------------------~li~~~~~~g~~~~a~~~~~~~~~---~~~~~  207 (521)
                                 .+.                                  .....+...|++++|+..|++..+   .+..+
T Consensus       226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a  305 (1157)
T PRK11447        226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEA  305 (1157)
T ss_pred             hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence                       000                                  112345567888888888887764   36677


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---hH------------HHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS---TL------------PCAIIAAANIAALGMGKSFHACAVKFLGK  272 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  272 (521)
                      +..+..++.+.|++++|+..|++..+..  |+..   .+            ......+...|++++|...++.+.+..+.
T Consensus       306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~  383 (1157)
T PRK11447        306 LGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT  383 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            8888888888888888888888887743  3221   11            12234566778888888888888887654


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHH--------------------------------------
Q 009967          273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-IVTWNA--------------------------------------  311 (521)
Q Consensus       273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~--------------------------------------  311 (521)
                       +...+..+..++...|++++|++.|+++.+  |+ ...+..                                      
T Consensus       384 -~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~  462 (1157)
T PRK11447        384 -DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND  462 (1157)
T ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence             556677778888888888888888888764  22 222221                                      


Q ss_pred             ----HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH---
Q 009967          312 ----VICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM---  383 (521)
Q Consensus       312 ----li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---  383 (521)
                          +...+...|++++|.+.|++..+.  .|+ ...+..+...+...|++++|...++++....+.  ++..+..+   
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~  538 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN--DPEQVYAYGLY  538 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence                233455678899999999988874  354 456677788888999999999999988644442  22222222   


Q ss_pred             -----------------------------------------HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009967          384 -----------------------------------------VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH  422 (521)
Q Consensus       384 -----------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~  422 (521)
                                                               ...+...|+.++|..+++.-  +++...+..+...+...
T Consensus       539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~  616 (1157)
T PRK11447        539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQR  616 (1157)
T ss_pred             HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHc
Confidence                                                     33344555666666665532  33445667778888999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      |++++|+..|+++++..|+++.++..++.+|...|++++|+..++...+.
T Consensus       617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999987654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=4.8e-21  Score=208.29  Aligned_cols=415  Identities=11%  Similarity=0.071  Sum_probs=326.6

Q ss_pred             hhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC-ChhhHH------------
Q 009967           49 VSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-SEFTFG------------  112 (521)
Q Consensus        49 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------  112 (521)
                      ...+...|++++|+..|++...  | +...+..+...+.+.|++++|+..|++..+..... ....+.            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            4556788999999999987642  3 66788899999999999999999999998754221 111111            


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCC
Q 009967          113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRER  189 (521)
Q Consensus       113 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~  189 (521)
                      .....+...|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+  | +...+..+...+. .++
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~  433 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS  433 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence            12335678899999999999999864 45667788889999999999999999999876  3 3445666666664 567


Q ss_pred             HHHHHHHHhhCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcch
Q 009967          190 FEDALKLFQEMPHRN------------VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAAL  256 (521)
Q Consensus       190 ~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~  256 (521)
                      .++|+.+++.+....            ...+..+...+...|++++|++.|++..+..  |+ ...+..+...+...|++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence            899999998876421            2345567788899999999999999998854  54 45667788899999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----Ch---------hHHHHHHHHHHHcCChH
Q 009967          257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER----NI---------VTWNAVICGYAQNGRGE  323 (521)
Q Consensus       257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~  323 (521)
                      ++|...++.+.+..+. +...+..+...+...++.++|...++.+...    +.         ..+..+...+...|+.+
T Consensus       512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            9999999999886554 5555555666778899999999999988642    11         12234566788999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      +|..+++.     .+++...+..+...+...|++++|...|+++....+  .++..+..++.+|...|++++|++.++.+
T Consensus       591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P--~~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP--GNADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999882     244556777788889999999999999999986554  45678999999999999999999999986


Q ss_pred             C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHh-CCC
Q 009967          404 P-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV------SSYVMLSNALSVAGKWDNVSNIRREMKE-KGM  474 (521)
Q Consensus       404 ~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~  474 (521)
                      . ..| +...+..+..++...|++++|.+++++++...|+++      .++..++..+...|++++|+..|++... .|+
T Consensus       664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~  743 (1157)
T PRK11447        664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI  743 (1157)
T ss_pred             hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence            4 344 455677788889999999999999999999876544      4677789999999999999999998853 344


Q ss_pred             c
Q 009967          475 T  475 (521)
Q Consensus       475 ~  475 (521)
                      .
T Consensus       744 ~  744 (1157)
T PRK11447        744 T  744 (1157)
T ss_pred             C
Confidence            3

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-22  Score=186.84  Aligned_cols=377  Identities=15%  Similarity=0.162  Sum_probs=227.3

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHH-HHHHHHHH
Q 009967           75 SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV-GSAILDLY  153 (521)
Q Consensus        75 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~  153 (521)
                      +|+.+...+-..|++++|+..++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.  .|+... ...+.+..
T Consensus       118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl  194 (966)
T KOG4626|consen  118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL  194 (966)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence            45556666666666777777776666643 224556666666666666666666666666663  344332 23333444


Q ss_pred             HcCCCHHHHHHHhhcCCC--CC-chhHHHHHHHHHcCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHH
Q 009967          154 IKLSSIEEATRVFEDTHN--PN-VVSYTTMICGLLKRERFEDALKLFQEMPHRN---VVSWNAMIGGYSQTGRNEEAVNL  227 (521)
Q Consensus       154 ~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~  227 (521)
                      ...|++.+|...+.+..+  |. ...|..|...+..+|++..|+..|++..+-|   ..+|-.|...|...+.+++|...
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~  274 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC  274 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence            456666666666655554  32 3356666666666677777777666665522   34566666666666666666666


Q ss_pred             HHHHHHCCCCCCh-hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 009967          228 FIEMLREGLVPNH-STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---  303 (521)
Q Consensus       228 ~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---  303 (521)
                      |......  .|+. ..+..+.-.|...|.++.|...+++.++..+. -...|+.|..++-..|++.+|.+.|++...   
T Consensus       275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p  351 (966)
T KOG4626|consen  275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP  351 (966)
T ss_pred             HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence            6665552  3432 34445555566666666666666666665444 345566666666666666666666666654   


Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-hHHH
Q 009967          304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYA  381 (521)
Q Consensus       304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~  381 (521)
                      ....+.+.|...|...|.+++|..+|....+  +.|.- ...+.|...|-.+|++++|...|+++.   .+.|+. ..|+
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~  426 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS  426 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence            2234566666666666666666666666555  33442 355666666666666666666666655   333442 3566


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 009967          382 CMVDLLSRSGRFKEAKEFLYDL-PFDPGI-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW  459 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  459 (521)
                      .+...|...|+.+.|.+.+.+. .+.|.. ..++.|...|...|+..+|++-|+.++.+.|+.|.+|..++.++.-..+|
T Consensus       427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw  506 (966)
T KOG4626|consen  427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW  506 (966)
T ss_pred             hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence            6666666666666666666653 234442 35666666666666666666666666666666666666666665555444


Q ss_pred             HHH
Q 009967          460 DNV  462 (521)
Q Consensus       460 ~~A  462 (521)
                      .+-
T Consensus       507 ~D~  509 (966)
T KOG4626|consen  507 TDY  509 (966)
T ss_pred             cch
Confidence            443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=8.1e-22  Score=183.07  Aligned_cols=418  Identities=11%  Similarity=0.082  Sum_probs=344.9

Q ss_pred             hhhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      |.+-.-+.|++++|++.-..+-.  | +....-.+-..+.+..+.+....--....+. .+.-..+|+.+.+.+-..|++
T Consensus        54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~  132 (966)
T KOG4626|consen   54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQL  132 (966)
T ss_pred             HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchH
Confidence            77777889999999987765432  2 2222223334455555666554433333332 345678999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCch-hHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967          125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVV-SYTTMICGLLKRERFEDALKLFQEMP  201 (521)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~  201 (521)
                      +.|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+  |+.. ....+...+...|++++|...+.+..
T Consensus       133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi  211 (966)
T KOG4626|consen  133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI  211 (966)
T ss_pred             HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence            99999999999854 44678899999999999999999999998887  4433 33445666777899999999998876


Q ss_pred             C--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhH
Q 009967          202 H--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV  277 (521)
Q Consensus       202 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  277 (521)
                      +  | -..+|+.|...+-.+|+...|+..|++....  .|+- ..|..+-..|...+.++.|...+..+....+. ...+
T Consensus       212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a  288 (966)
T KOG4626|consen  212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVA  288 (966)
T ss_pred             hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhh
Confidence            5  3 2468999999999999999999999999884  4553 57888999999999999999999998877655 6677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTE--RN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNH  353 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~  353 (521)
                      +..+...|...|.++.|+..|++..+  |+ +..|+.|..++-..|+..+|...+++....  .|+ ..+.+.|...+..
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE  366 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence            88888899999999999999999986  44 368999999999999999999999998874  354 4588999999999


Q ss_pred             hccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 009967          354 TGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGEF  430 (521)
Q Consensus       354 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~  430 (521)
                      .|.++.|..+|....+-.   |. ....+.|...|..+|++++|+..+++ +.++|+.. +++.+...|...|+.+.|++
T Consensus       367 ~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q  443 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ  443 (966)
T ss_pred             hccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence            999999999999886333   44 34689999999999999999999998 45678754 89999999999999999999


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967          431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  475 (521)
                      .+.+++..+|.-..++..|+.+|..+|+..+|++-+++..+....
T Consensus       444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999999999998765433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=2.9e-20  Score=190.08  Aligned_cols=390  Identities=14%  Similarity=0.050  Sum_probs=287.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967           76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK  155 (521)
Q Consensus        76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  155 (521)
                      +......+.+.|++++|+..|++..+  +.|+...|..+..++...|++++|+..++..++.. +.+...+..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            33556678888999999999999886  45777888888888899999999999999988864 4456788888899999


Q ss_pred             CCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC-----------------------------C
Q 009967          156 LSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPH-----------------------------R  203 (521)
Q Consensus       156 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------------------------~  203 (521)
                      .|++++|...|..+..   .+......++..+........+...++.-..                             .
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL  286 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence            9999999887755432   1111111111111111111112222211110                             0


Q ss_pred             Ch---hHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh
Q 009967          204 NV---VSWNAMIGG---YSQTGRNEEAVNLFIEMLREG-LVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV  275 (521)
Q Consensus       204 ~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  275 (521)
                      +.   ..+..+...   ....+++++|.+.|+.....+ ..|+ ...+..+...+...|+++.|...++.+.+..+. ..
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~  365 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT  365 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence            00   111111111   123467999999999998764 2343 345667777888999999999999999987544 46


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967          276 FVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN  352 (521)
Q Consensus       276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  352 (521)
                      ..+..+..++...|++++|...|+++.+   .+...|..+...+...|++++|...|++..+.. +.+...+..+..++.
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~  444 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence            6788889999999999999999998865   456789999999999999999999999998853 234567778888899


Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHHhcC
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGI-G-------FWKALLGGCQIHS  423 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~g  423 (521)
                      ..|++++|...|+++....+  .++..+..+..++...|++++|++.|++. ...|+. .       .++.....+...|
T Consensus       445 ~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~  522 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ  522 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence            99999999999999875543  45678999999999999999999999883 333331 1       1111222234469


Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       424 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ++++|.+++++++.++|++..++..++.++.+.|++++|+..|++..+.
T Consensus       523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998754

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=1.6e-20  Score=182.45  Aligned_cols=273  Identities=13%  Similarity=0.063  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      ++..+...+...|++++|..+++.+...+..++   ...+..+...+...|+++.|..+++.+.+... .+..++..++.
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~  149 (389)
T PRK11788         71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLE  149 (389)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence            344444444444444444444444443211111   12233444444444455555544444444321 24555666667


Q ss_pred             HHHhcCCHHHHHHHHhhcCC--CC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967          284 FYAKCGSMEDSLLVFDKLTE--RN------IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG  355 (521)
Q Consensus       284 ~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  355 (521)
                      ++.+.|++++|.+.++.+.+  |+      ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus       150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g  228 (389)
T PRK11788        150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG  228 (389)
T ss_pred             HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence            77777777777777776653  11      1234566777888899999999999888743 233557777788888999


Q ss_pred             cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967          356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGGCQIHSNVELGEFAARR  434 (521)
Q Consensus       356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  434 (521)
                      ++++|.++++++....+ .....++..++.+|.+.|++++|...++++. ..|+...+..++..+...|++++|..++++
T Consensus       229 ~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~  307 (389)
T PRK11788        229 DYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE  307 (389)
T ss_pred             CHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999998864332 1224567888899999999999999998853 467777778888889999999999999999


Q ss_pred             HHhcCCCCchHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCcceEE
Q 009967          435 ILALDPEDVSSYVMLSNALSV---AGKWDNVSNIRREMKEKGMTRVPGCSWI  483 (521)
Q Consensus       435 ~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~  483 (521)
                      +++..|+++ .+..+...+..   .|+.+++..++++|.++++.++|.+...
T Consensus       308 ~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~  358 (389)
T PRK11788        308 QLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCR  358 (389)
T ss_pred             HHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECC
Confidence            999999655 55555555543   5689999999999999999999985443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=5.3e-19  Score=180.19  Aligned_cols=373  Identities=12%  Similarity=0.046  Sum_probs=222.5

Q ss_pred             cccCCChhHHHHHhccCCCC------CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           52 GSESDKFSSVHQVFDEVPDL------NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        52 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      +.++.+++.---+|...++.      +..-.-.++..+.++|++++|..+++...... +-+...+..++.+....|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence            34556666665555544421      22233345556666777777777777766653 223333444444555667777


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC
Q 009967          126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHR  203 (521)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  203 (521)
                      .|...++.+.+.. +.+...+..+...+...|++++|...++++..  |+                              
T Consensus        94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~------------------------------  142 (656)
T PRK15174         94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG------------------------------  142 (656)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------
Confidence            7777777776643 34455566666666666777766666666544  22                              


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      +...+..+..++...|++++|...++.+....  |+.......+..+...|++++|...++.+.+....++......+..
T Consensus       143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~  220 (656)
T PRK15174        143 NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD  220 (656)
T ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence            23344444444455555555555444443322  2221111111224444555555555554444432223333344456


Q ss_pred             HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 009967          284 FYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEE----AIEFFERMRINGIRPNGVTLLGLLWACNHTGL  356 (521)
Q Consensus       284 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  356 (521)
                      ++.+.|++++|...|+++.+   .+...+..+...+...|++++    |...|++..... +.+...+..+...+...|+
T Consensus       221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~  299 (656)
T PRK15174        221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQ  299 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCC
Confidence            66677777777777777654   344566677777777887775    788888877642 2244577777778888888


Q ss_pred             HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 009967          357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGF-WKALLGGCQIHSNVELGEFAARR  434 (521)
Q Consensus       357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~  434 (521)
                      +++|...++++....+  .++..+..+..+|.+.|++++|...++++. ..|+... +..+..++...|+.++|+..|++
T Consensus       300 ~~eA~~~l~~al~l~P--~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~  377 (656)
T PRK15174        300 NEKAIPLLQQSLATHP--DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH  377 (656)
T ss_pred             HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888888765443  344566777888888888888888887753 3555433 33345667888888888888888


Q ss_pred             HHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       435 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      +++..|++.            ..++++|...+.+..+.-
T Consensus       378 al~~~P~~~------------~~~~~ea~~~~~~~~~~~  404 (656)
T PRK15174        378 YIQARASHL------------PQSFEEGLLALDGQISAV  404 (656)
T ss_pred             HHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence            888888654            234456666666655543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=3.1e-18  Score=178.33  Aligned_cols=393  Identities=10%  Similarity=-0.002  Sum_probs=212.2

Q ss_pred             hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      .++.....|+.++|++++.+...   .+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+...|++
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY   99 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence            66777788888888888877553   233457888888888888999988888887753 34455666777778888888


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967          125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMP  201 (521)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~  201 (521)
                      ++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.+  | +...+..+...+...|..+.|++.++...
T Consensus       100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~  177 (765)
T PRK10049        100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN  177 (765)
T ss_pred             HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence            88888888888763 44555 77788888888888888888888876  4 34455667777778888888888888776


Q ss_pred             CCChh--------HHHHHHHHHHhc-----CCh---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHhhcchHHH
Q 009967          202 HRNVV--------SWNAMIGGYSQT-----GRN---EEAVNLFIEMLRE-GLVPNHS-TLP----CAIIAAANIAALGMG  259 (521)
Q Consensus       202 ~~~~~--------~~~~l~~~~~~~-----~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~a  259 (521)
                      . ++.        ....++......     +++   ++|++.++.+.+. ...|+.. .+.    ..+.++...|+.+.|
T Consensus       178 ~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA  256 (765)
T PRK10049        178 L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV  256 (765)
T ss_pred             C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence            5 211        112222222111     123   5566666666643 1122211 110    002223344455555


Q ss_pred             HHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          260 KSFHACAVKFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-------IVTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       260 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      ...|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+.+       ......+..++...|++++|..+++.
T Consensus       257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~  335 (765)
T PRK10049        257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH  335 (765)
T ss_pred             HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            5555555444321 111 11113344445555555555555443211       11233333344444555555555554


Q ss_pred             HHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-
Q 009967          332 MRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK---PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-  405 (521)
Q Consensus       332 m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-  405 (521)
                      +....  |... .+.                        .....|+   ...+..+...+...|++++|+++++++. . 
T Consensus       336 ~~~~~--P~~~~~~~------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~  389 (765)
T PRK10049        336 TINNS--PPFLRLYG------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA  389 (765)
T ss_pred             HhhcC--CceEeecC------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44321  1000 000                        0000011   1123334444555555555555555432 1 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      +.+...+..++..+...|++++|++.++++++..|+++..+...+..+.+.|++++|..+++++.+
T Consensus       390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            223334444445555555555555555555555555555555555555555555555555555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=1e-19  Score=176.81  Aligned_cols=283  Identities=11%  Similarity=0.012  Sum_probs=139.9

Q ss_pred             HHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHHcCCC
Q 009967           82 RFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN---VFVGSAILDLYIKLSS  158 (521)
Q Consensus        82 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~  158 (521)
                      .+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++   ...+..+...|.+.|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            3445566666666666666643 23344556666666666666666666666665331111   2345555666666666


Q ss_pred             HHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCC--------hhHHHHHHHHHHhcCChHHHHHH
Q 009967          159 IEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPHRN--------VVSWNAMIGGYSQTGRNEEAVNL  227 (521)
Q Consensus       159 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~  227 (521)
                      +++|..+|+++.+   .+..++..++..+.+.|++++|.+.++.+.+.+        ...+..+...+...|++++|...
T Consensus       123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            6666666666544   233345555555555555555555555543310        11233444555555555555555


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC
Q 009967          228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN  305 (521)
Q Consensus       228 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~  305 (521)
                      |+++.+.. +.+...+..+...+...|++++|..+++.+.+.++.....+++.++.+|.+.|++++|...++++.+  |+
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            55555432 1112233344444444555555555555444433222233344444555555555555555554432  33


Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---hccHHHHHHHHHHch
Q 009967          306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH---TGLVEKGYSYFSQAK  368 (521)
Q Consensus       306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~  368 (521)
                      ...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..+++++.
T Consensus       282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~  345 (389)
T PRK11788        282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV  345 (389)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence            334444445555555555555555544442  3444444444443332   234444555554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=2.2e-18  Score=175.66  Aligned_cols=314  Identities=11%  Similarity=-0.014  Sum_probs=199.7

Q ss_pred             hhhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      ++..+.+.|++++|..+++.+..  | +...+..++.+....|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus        48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~  126 (656)
T PRK15174         48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY  126 (656)
T ss_pred             HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence            67788899999999999987642  2 44566667777888999999999999999864 44566778888889999999


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 009967          125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH  202 (521)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  202 (521)
                      ++|...++.+.+.. +.+...+..+..++...|++++|...++.+..  |+.......+..+.+.|++++|+..++.+.+
T Consensus       127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~  205 (656)
T PRK15174        127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLP  205 (656)
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999864 55677888899999999999999999987643  4333222222346777888888887777654


Q ss_pred             C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHH----HHHHHHHHHHcCCCC
Q 009967          203 R----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGM----GKSFHACAVKFLGKL  273 (521)
Q Consensus       203 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~  273 (521)
                      .    +...+..+..++...|++++|+..++++...+  |+ ...+..+...+...|+++.    |...++.+.+..+. 
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-  282 (656)
T PRK15174        206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-  282 (656)
T ss_pred             cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence            2    22334445567777788888888777777643  33 3334444455555555543    45555555544333 


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT-LLGLLW  349 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~  349 (521)
                      +..++..+...+.+.|++++|...+++..+  | +...+..+..++.+.|++++|...++++...  .|+... +..+..
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~  360 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA  360 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence            444455555555555555555555554442  2 2233444445555555555555555554442  233221 222233


Q ss_pred             HHHhhccHHHHHHHHHHch
Q 009967          350 ACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       350 ~~~~~~~~~~a~~~~~~~~  368 (521)
                      ++...|+.++|...|+++.
T Consensus       361 al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        361 ALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            4445555555555555544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.87  E-value=4e-18  Score=174.32  Aligned_cols=391  Identities=10%  Similarity=0.002  Sum_probs=287.6

Q ss_pred             hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      ....+.+.|++++|++.|++..  .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|+++
T Consensus       133 ~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       133 KGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence            4467788999999999998854  4677889999999999999999999999998864 345668888999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C---------------------------Cc--
Q 009967          126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P---------------------------NV--  174 (521)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---------------------------~~--  174 (521)
                      +|+..+..+...+-..+.. ...++..+........+...++.-..  +                           +.  
T Consensus       212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (615)
T TIGR00990       212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET  290 (615)
T ss_pred             HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence            9998887665543111111 11111111111111222222211111  0                           00  


Q ss_pred             -hhHHHHHHHH---HcCCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhH
Q 009967          175 -VSYTTMICGL---LKRERFEDALKLFQEMPH------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTL  243 (521)
Q Consensus       175 -~~~~~li~~~---~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~  243 (521)
                       ..+..+...+   ...+++++|.+.|+...+      .....|+.+...+...|++++|+..|++.....  |+ ...|
T Consensus       291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~  368 (615)
T TIGR00990       291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSY  368 (615)
T ss_pred             ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHH
Confidence             0111111111   234688999999998764      234678888999999999999999999998853  55 4577


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcC
Q 009967          244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNG  320 (521)
Q Consensus       244 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~  320 (521)
                      ..+...+...|+++.|...++.+.+..+. +..++..+..++...|++++|...|++..+  | +...+..+...+.+.|
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g  447 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG  447 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence            78888899999999999999999887654 678899999999999999999999999875  3 4567888889999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh--h---HHHHHHHHHHhcCCHHH
Q 009967          321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--E---HYACMVDLLSRSGRFKE  395 (521)
Q Consensus       321 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~---~~~~l~~~~~~~g~~~~  395 (521)
                      ++++|+..|++..... +.+...+..+..++...|++++|...|++.....+-....  .   .++.....+...|++++
T Consensus       448 ~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e  526 (615)
T TIGR00990       448 SIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE  526 (615)
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence            9999999999988742 3346688888999999999999999999987443311111  1   12222333445799999


Q ss_pred             HHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          396 AKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       396 A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                      |.+++++. ...|+ ...+..+...+...|++++|+..|+++.++.+....
T Consensus       527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            99999883 44554 447888999999999999999999999998875433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.87  E-value=3.6e-17  Score=170.66  Aligned_cols=212  Identities=11%  Similarity=0.014  Sum_probs=151.4

Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      ++.+.|...+.......  |+......+...+.+.|++++|...|+++..  ++...+..+...+.+.|++++|...+++
T Consensus       490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q  567 (987)
T PRK09782        490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ  567 (987)
T ss_pred             CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44555555555554443  2333333334445578888888888877654  4444566667777888888888888888


Q ss_pred             HHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-
Q 009967          332 MRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-  408 (521)
Q Consensus       332 m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-  408 (521)
                      ..+..  |+.. .+..+.......|++++|...+++.....   |+...+..+..++.+.|++++|...+++. ...|+ 
T Consensus       568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~  642 (987)
T PRK09782        568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN  642 (987)
T ss_pred             HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            87653  4333 33333334445588888888888887443   56777888888888899999999888874 33454 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus       643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            5577777778888899999999999999999988889999999999999999999988887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.84  E-value=3.2e-16  Score=160.34  Aligned_cols=433  Identities=11%  Similarity=0.019  Sum_probs=298.1

Q ss_pred             CCccchHHHHHHHhhcCCCchhhhhhcccCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHhHHC
Q 009967           26 NYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD--LNVV-SATTIIGRFAKQHHYEEAIYLFSRMLLL  102 (521)
Q Consensus        26 ~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~  102 (521)
                      ..+...+..+...+..-           +.|+++.|+..|++..+  |+.. ....++..+...|+.++|+..+++....
T Consensus        29 ~~p~~~~~~y~~aii~~-----------r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p   97 (822)
T PRK14574         29 VNPAMADTQYDSLIIRA-----------RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS   97 (822)
T ss_pred             cCccchhHHHHHHHHHH-----------hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC
Confidence            34444555555555443           89999999999988764  4321 2237788888889999999999998721


Q ss_pred             CCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHH
Q 009967          103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTM  180 (521)
Q Consensus       103 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l  180 (521)
                       .+.+......+...+...|++++|.++|+.+.+.. +.+...+..++..+...++.++|++.++++..  |+...+..+
T Consensus        98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l  175 (822)
T PRK14574         98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL  175 (822)
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence             12223333333557788899999999999999865 44567777888899999999999999999987  554445444


Q ss_pred             HHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH------HHHHHHH-
Q 009967          181 ICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL------PCAIIAA-  250 (521)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------~~ll~~~-  250 (521)
                      +..+...++..+|++.++++.+  | +...+..+..+..+.|-...|.++.++-... +.+.....      ...++-. 
T Consensus       176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~  254 (822)
T PRK14574        176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAV  254 (822)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcc
Confidence            4444446666669999998875  3 5677788888889999888888776542211 11111000      0011000 


Q ss_pred             ----Hhhc---chHHHHHHHHHHHHc-CCCCCh-hH----HHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHH
Q 009967          251 ----ANIA---ALGMGKSFHACAVKF-LGKLDV-FV----GNSLISFYAKCGSMEDSLLVFDKLTER----NIVTWNAVI  313 (521)
Q Consensus       251 ----~~~~---~~~~a~~~~~~~~~~-~~~~~~-~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li  313 (521)
                          ....   -.+.+..-++.+... +..|.. ..    ..-.+-++...|+..++++.|+.+..+    ...+-..+.
T Consensus       255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a  334 (822)
T PRK14574        255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA  334 (822)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence                0111   233444444444442 222321 11    123345677888999999999999842    234566778


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC----------CCChh
Q 009967          314 CGYAQNGRGEEAIEFFERMRING-----IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG----------MLKPE  378 (521)
Q Consensus       314 ~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~  378 (521)
                      .+|...+++++|..+++.+....     ..++......|.-++...+++++|..+++.+....+.          .|++.
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d  414 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD  414 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence            88999999999999999886632     1223334567888889999999999999998643331          23332


Q ss_pred             ---HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          379 ---HYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       379 ---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                         .+..++..+...|++.+|++.++++.  .+-|......+...+...|++.+|++.++.+..++|++..+....+.++
T Consensus       415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a  494 (822)
T PRK14574        415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA  494 (822)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence               34556777888999999999998863  2456778888888899999999999999888889999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 009967          454 SVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       454 ~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...|++.+|..+.+++.+.
T Consensus       495 l~l~e~~~A~~~~~~l~~~  513 (822)
T PRK14574        495 MALQEWHQMELLTDDVISR  513 (822)
T ss_pred             HhhhhHHHHHHHHHHHHhh
Confidence            9999999998888766443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.81  E-value=1.2e-15  Score=159.41  Aligned_cols=407  Identities=9%  Similarity=-0.017  Sum_probs=291.1

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHH--HHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGR--FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      ++..+.+.|+++.|+++.+. ...+. .  ..++.  ....+...++...+..|.+.. +-+......+--...+.|+.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~  393 (987)
T PRK09782        319 TLPVLLKEGQYDAAQKLLAT-LPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSR  393 (987)
T ss_pred             HHHHHHhccHHHHHHHHhcC-CCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHH
Confidence            47888888888877777542 22222 1  22222  223466777777777777652 335555555555567778888


Q ss_pred             HHHHHHHHHHHh-C-CCCcHHHHHHHHHHHHcCCCH---HHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967          126 LGKQLHAWATKV-G-LQSNVFVGSAILDLYIKLSSI---EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM  200 (521)
Q Consensus       126 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  200 (521)
                      +|.++++..... + -..+....+.++..|.+.+..   .++..+-..+..+....|   ...+   -....+...+...
T Consensus       394 ~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~a  467 (987)
T PRK09782        394 EAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW---QSQL---PGIADNCPAIVRL  467 (987)
T ss_pred             HHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH---Hhhh---hhhhhhHHHHHHh
Confidence            888888877662 1 223455566788888888773   344333333333322111   1111   1112222223222


Q ss_pred             CC---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh
Q 009967          201 PH---R--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV  275 (521)
Q Consensus       201 ~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  275 (521)
                      ..   +  +...|..+..++.. +++++|...+.+.....  |+......+...+...|+++.|...++.+....  |+.
T Consensus       468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~  542 (987)
T PRK09782        468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSN  542 (987)
T ss_pred             cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCc
Confidence            22   3  66788888888877 88999999888877643  766555555666678999999999999876553  334


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967          276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA---VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN  352 (521)
Q Consensus       276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  352 (521)
                      ..+..+..++.+.|+.++|.+.|++..+.++...+.   +.......|++++|...+++..+.  .|+...+..+..++.
T Consensus       543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~  620 (987)
T PRK09782        543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR  620 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence            456677888899999999999999988644333333   333344559999999999999874  478888999999999


Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEF  430 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~  430 (521)
                      +.|++++|...++++....+  .++..+..+..++...|++++|+..+++. ...| +...+..+..++...|++++|+.
T Consensus       621 ~lG~~deA~~~l~~AL~l~P--d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        621 QRHNVPAAVSDLRAALELEP--NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999985554  45668889999999999999999999984 3445 56688999999999999999999


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      .|+++++..|++..+....++...+..+++.|.+.+++....++
T Consensus       699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999888655444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=2.3e-15  Score=154.15  Aligned_cols=426  Identities=11%  Similarity=0.039  Sum_probs=312.7

Q ss_pred             chhhccccCCCCccchHHHHHHHhhcCCCch----hhhhhcccCCChhHHHHHhccCCCCCccc-HHHH--HHHHHhcCC
Q 009967           16 KLSKLHSLAPNYLIETQKASVQKLETPAIRT----DSVSCGSESDKFSSVHQVFDEVPDLNVVS-ATTI--IGRFAKQHH   88 (521)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--~~~~~~~g~   88 (521)
                      ....+....-++...+........+..--.+    +++..+...|+.++|+..+++...|+... +..+  ...+...|+
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence            3333444444544444444444443320111    27888889999999999999987764443 3333  457778899


Q ss_pred             hHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 009967           89 YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED  168 (521)
Q Consensus        89 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  168 (521)
                      +++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+...  .|+...+..++..+...++..+|++.+++
T Consensus       118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            999999999999875 445666777778889999999999999999875  46666665555555556777679999999


Q ss_pred             CCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChh------HHHHHHHHH---H--hcCC---hHHHHHHH
Q 009967          169 THN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVV------SWNAMIGGY---S--QTGR---NEEAVNLF  228 (521)
Q Consensus       169 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~------~~~~l~~~~---~--~~~~---~~~a~~~~  228 (521)
                      +.+  | +...+..+...+.+.|-...|.++..+-+.   +...      ....+++.-   .  ...+   .+.|+.-+
T Consensus       195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~  274 (822)
T PRK14574        195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY  274 (822)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence            986  5 456778889999999999999999988764   1110      011111110   0  1112   34566666


Q ss_pred             HHHHHC-CCCCChh-----hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009967          229 IEMLRE-GLVPNHS-----TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT  302 (521)
Q Consensus       229 ~~m~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  302 (521)
                      +.+... +-.|...     ...-.+-++...|+...+...++.+...+.+....+-.++.++|...+++++|..+|..+.
T Consensus       275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~  354 (822)
T PRK14574        275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY  354 (822)
T ss_pred             HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence            666652 2224322     2234567888999999999999999999987777889999999999999999999999985


Q ss_pred             CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--HH-HHHHHHHHHHhhccHHH
Q 009967          303 ER---------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-----------RPN--GV-TLLGLLWACNHTGLVEK  359 (521)
Q Consensus       303 ~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~--~~-~~~~ll~~~~~~~~~~~  359 (521)
                      ..         +......|.-+|...+++++|..+++++.+...           .||  -. .+..++..+...|++.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~  434 (822)
T PRK14574        355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT  434 (822)
T ss_pred             hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence            42         223357788899999999999999999987311           122  22 33445666889999999


Q ss_pred             HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      |++.++++....|  -|......+.+.+...|.+.+|++.++... ..|+ ..+....+.++...+++++|..+.+.+.+
T Consensus       435 Ae~~le~l~~~aP--~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~  512 (822)
T PRK14574        435 AQKKLEDLSSTAP--ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS  512 (822)
T ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            9999999976665  567788899999999999999999997743 3554 55777888888999999999999999999


Q ss_pred             cCCCCchHH
Q 009967          438 LDPEDVSSY  446 (521)
Q Consensus       438 ~~p~~~~~~  446 (521)
                      ..|+++.+-
T Consensus       513 ~~Pe~~~~~  521 (822)
T PRK14574        513 RSPEDIPSQ  521 (822)
T ss_pred             hCCCchhHH
Confidence            999888553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.80  E-value=6.5e-16  Score=161.04  Aligned_cols=360  Identities=12%  Similarity=0.058  Sum_probs=235.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCC
Q 009967           78 TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS  157 (521)
Q Consensus        78 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  157 (521)
                      -.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..++.++...|
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g   97 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG   97 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence            34556667788888888888877522 3445567777777888888888888888877753 445666677777888888


Q ss_pred             CHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          158 SIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEM  231 (521)
Q Consensus       158 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m  231 (521)
                      ++++|...++++.+  | +.. +..+...+...|+.++|+..++++.+  | +...+..+..++...+..+.|++.++..
T Consensus        98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049         98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            88888888887765  3 334 66677777777777877777777665  2 4455566666777777777777777655


Q ss_pred             HHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH-----HhcCCH---HHHHHHHhhcCC
Q 009967          232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY-----AKCGSM---EDSLLVFDKLTE  303 (521)
Q Consensus       232 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~~  303 (521)
                      ..   .|+....   +       .                   ......++...     ...+++   ++|.+.++.+.+
T Consensus       177 ~~---~p~~~~~---l-------~-------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~  224 (765)
T PRK10049        177 NL---TPAEKRD---L-------E-------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA  224 (765)
T ss_pred             CC---CHHHHHH---H-------H-------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence            43   2321000   0       0                   00001111111     111222   556666665552


Q ss_pred             -----CChh-HH----HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967          304 -----RNIV-TW----NAVICGYAQNGRGEEAIEFFERMRINGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP  372 (521)
Q Consensus       304 -----~~~~-~~----~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  372 (521)
                           |+.. .+    ...+..+...|++++|+..|+.+.+.+-+ |+. ....+..++...|++++|...|+++....+
T Consensus       225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p  303 (765)
T PRK10049        225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE  303 (765)
T ss_pred             hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence                 2111 11    11123345667888888888887775422 322 222245567788888888888887753333


Q ss_pred             CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C-------------CC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967          373 GML--KPEHYACMVDLLSRSGRFKEAKEFLYDLPF-D-------------PG---IGFWKALLGGCQIHSNVELGEFAAR  433 (521)
Q Consensus       373 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------------~~---~~~~~~l~~~~~~~g~~~~A~~~~~  433 (521)
                      ..+  .......+..++.+.|++++|.++++.+.. .             |+   ...+..+...+...|+.++|++.++
T Consensus       304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~  383 (765)
T PRK10049        304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR  383 (765)
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            221  123455666677788888888888776531 1             23   2245566777889999999999999


Q ss_pred             HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       434 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ++....|.++..+..++..+...|++++|++.+++..+..
T Consensus       384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999987643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.79  E-value=4.6e-16  Score=152.60  Aligned_cols=464  Identities=14%  Similarity=0.094  Sum_probs=266.3

Q ss_pred             ccccccCCCcccchhhcccc-CCCCccchHHHHHHHhhcCCCchh----------hhhhcccCCChhHHHHHhccC---C
Q 009967            4 LLCICRSSLSLNKLSKLHSL-APNYLIETQKASVQKLETPAIRTD----------SVSCGSESDKFSSVHQVFDEV---P   69 (521)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~----------l~~~~~~~g~~~~A~~~~~~~---~   69 (521)
                      +|.++|..++.++..+-|++ -++..+.+...+.....   +.|.          +--.+-....+..++.++...   .
T Consensus       190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq---Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n  266 (1018)
T KOG2002|consen  190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ---LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN  266 (1018)
T ss_pred             HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh---cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc
Confidence            35566666666666666666 34555555555555554   2233          111111223344444444332   2


Q ss_pred             CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCC--CCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHH
Q 009967           70 DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI--RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS  147 (521)
Q Consensus        70 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  147 (521)
                      ..|+...+.|...|.-.|+++.++.+...+.....  ..-...|-.+.+++-..|++++|..+|.+..+..-..-...+.
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~  346 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV  346 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence            34566667777777777777777777777765321  1223346667777777777777777777766643111133344


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCC----CHHHHHHHHhhCCCC---ChhHHHHHHHHHHh
Q 009967          148 AILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRE----RFEDALKLFQEMPHR---NVVSWNAMIGGYSQ  217 (521)
Q Consensus       148 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~  217 (521)
                      .+...|.+.|+++.+...|+.+.+  | +..+...|...|+..+    ..+.|..++.+...+   |...|-.+...+..
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            566777777777777777777655  3 3445555566665554    345555555555442   34445555444444


Q ss_pred             cCChHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc---CCCCCh------hHHHHHHHH
Q 009967          218 TGRNEEAVNLFIEM----LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF---LGKLDV------FVGNSLISF  284 (521)
Q Consensus       218 ~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~  284 (521)
                      ..-+.. +..|...    ...+-.+.+...+.+.......|++..|...+..+...   ...++.      .+-..+..+
T Consensus       427 ~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl  505 (1018)
T KOG2002|consen  427 TDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL  505 (1018)
T ss_pred             cChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence            333222 4444332    23333455556666666666666666666666655543   111111      112223333


Q ss_pred             HHhcCCHHHHHHHHhhcCC-------------------------------------CChhHHHHHHHHHHHcCChHHHHH
Q 009967          285 YAKCGSMEDSLLVFDKLTE-------------------------------------RNIVTWNAVICGYAQNGRGEEAIE  327 (521)
Q Consensus       285 ~~~~g~~~~A~~~~~~~~~-------------------------------------~~~~~~~~li~~~~~~~~~~~A~~  327 (521)
                      .-..++.+.|.+.|..+.+                                     .++..+..+...+.....+..|.+
T Consensus       506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k  585 (1018)
T KOG2002|consen  506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK  585 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence            3444444445444444443                                     233334444444444444444444


Q ss_pred             HHHHHHHC-CCCCCHHHHHHHHHHHHh------------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967          328 FFERMRIN-GIRPNGVTLLGLLWACNH------------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK  394 (521)
Q Consensus       328 ~~~~m~~~-~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  394 (521)
                      -|....+. ...+|..+...|...|..            .+..++|.++|.++...++  -|...-+.+.-+++..|++.
T Consensus       586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp--kN~yAANGIgiVLA~kg~~~  663 (1018)
T KOG2002|consen  586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP--KNMYAANGIGIVLAEKGRFS  663 (1018)
T ss_pred             HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--chhhhccchhhhhhhccCch
Confidence            44333321 112455555556665432            2345778888887764443  45556677888888888999


Q ss_pred             HHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          395 EAKEFLYDLPF--DPGIGFWKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       395 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +|..+|.++..  .....+|-.+..+|...|++..|++.|+......  .+++.+...|++++.+.|++.+|.+.+....
T Consensus       664 ~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  664 EARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99998888652  3345678888888888999999999998888743  3477888889999999999988888887765


Q ss_pred             hCC
Q 009967          471 EKG  473 (521)
Q Consensus       471 ~~g  473 (521)
                      ...
T Consensus       744 ~~~  746 (1018)
T KOG2002|consen  744 HLA  746 (1018)
T ss_pred             HhC
Confidence            543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.78  E-value=6.4e-16  Score=151.64  Aligned_cols=399  Identities=12%  Similarity=0.044  Sum_probs=242.6

Q ss_pred             hhhhcccCCChhHHHHHhccCCC--CC--cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC-
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD--LN--VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE-  122 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-  122 (521)
                      +.++|-..|++++|...|-.-..  ++  +..+--+.+.+.+.|+++.+...|+...+.. +-+..+...+...|+..+ 
T Consensus       313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~  391 (1018)
T KOG2002|consen  313 LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAK  391 (1018)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhh
Confidence            55555555666666555543221  22  2223344555555566666666655555532 223333333333343332 


Q ss_pred             ---ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCC--------CCCchhHHHHHHHHHcCCCHH
Q 009967          123 ---DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH--------NPNVVSYTTMICGLLKRERFE  191 (521)
Q Consensus       123 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~  191 (521)
                         ..+.|..++...++.- +.|...|-.+...+....- -.+..+|....        ...+...|.+...+...|+++
T Consensus       392 ~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~  469 (1018)
T KOG2002|consen  392 KQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE  469 (1018)
T ss_pred             hhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence               2233444444333322 3344445444444433222 22233332221        134445555666666666666


Q ss_pred             HHHHHHhhCCC-------CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHhhcchH
Q 009967          192 DALKLFQEMPH-------RNV------VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP-CAIIAAANIAALG  257 (521)
Q Consensus       192 ~a~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~  257 (521)
                      .|...|+....       ++.      .+-..+....-..++++.|.+.|.......  |+-.... -+.-.....+...
T Consensus       470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~  547 (1018)
T KOG2002|consen  470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLY  547 (1018)
T ss_pred             HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcH
Confidence            66666655432       111      122334455555566666666666666532  4433222 1111112234566


Q ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHH------------cC
Q 009967          258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIVTWNAVICGYAQ------------NG  320 (521)
Q Consensus       258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~~  320 (521)
                      .|...+.......-. ++..+..+...|.+..+|..|.+-|..+.+     +|+.+.-+|...|.+            .+
T Consensus       548 ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk  626 (1018)
T KOG2002|consen  548 EASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK  626 (1018)
T ss_pred             HHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence            666666666654432 556666677788888888888886666653     455555556665542            34


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 009967          321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL  400 (521)
Q Consensus       321 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  400 (521)
                      ..++|+++|.+..... +-|...-+.+.-+++..|++..|..+|.++++...  ....+|-.+..+|..+|++..|+++|
T Consensus       627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            5788999999888754 44777888888889999999999999999974443  34556899999999999999999999


Q ss_pred             hhC-C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          401 YDL-P---FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       401 ~~~-~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      +.. .   .+.+....+.|..++...|.+.+|.+.+..+....|.++.+...++....+
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk  762 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK  762 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence            873 1   256777899999999999999999999999999999999887777766544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=1.9e-15  Score=136.13  Aligned_cols=203  Identities=15%  Similarity=0.092  Sum_probs=163.6

Q ss_pred             hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 009967          252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEF  328 (521)
Q Consensus       252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~  328 (521)
                      ..|+++.|...+.+.+..........|| +.-.+-..|++++|++.|-++..   .+..+...+...|-...+...|+++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            4578888888888888764443333333 23346678999999999988764   6777888888889999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC
Q 009967          329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP  407 (521)
Q Consensus       329 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~  407 (521)
                      +.+.... ++.|...+..|...|-+.|+-.+|.+.+-.-  -.-++-+..+...|...|....-+++++.+|++.. ..|
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds--yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS--YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc--ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            9877653 4456678888999999999999999876543  22344677888889999999999999999999854 489


Q ss_pred             CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          408 GIGFWKALLGGCQ-IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       408 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      +..-|..++..|. +.|++++|.++|+...+..|.+...+..|++.+...|.
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            9999999988865 56999999999999999999999999999999888775

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.73  E-value=1.9e-14  Score=129.77  Aligned_cols=390  Identities=12%  Similarity=0.097  Sum_probs=245.1

Q ss_pred             HHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHH-HHHHHcCCCChHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHH
Q 009967           80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS-VIPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYI  154 (521)
Q Consensus        80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~  154 (521)
                      .+-|..+..+.+|+..|+-+.+..+-|+...... +-+.+.+.+++.+|+++|...+..-...+    ..+.+.+.-.+.
T Consensus       208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi  287 (840)
T KOG2003|consen  208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI  287 (840)
T ss_pred             HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence            3445556677888888888877777777655432 33446677777888888877766421122    233444455667


Q ss_pred             cCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC----------------CChhHHHH-----H
Q 009967          155 KLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH----------------RNVVSWNA-----M  211 (521)
Q Consensus       155 ~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~-----l  211 (521)
                      +.|.++.|+..|+...+  |+..+-..|+-++.--|+.++..+.|.+|..                |+....+.     .
T Consensus       288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~  367 (840)
T KOG2003|consen  288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH  367 (840)
T ss_pred             ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence            77888888888877665  6666555555566667777777777776642                11111111     1


Q ss_pred             HHHHHhcCC--hHHHHHHHHHHHHCCCCCChhh-HHHH--------------------HHHHHhhcchHHHHHHHHHHHH
Q 009967          212 IGGYSQTGR--NEEAVNLFIEMLREGLVPNHST-LPCA--------------------IIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       212 ~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~-~~~l--------------------l~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      +.-..+.+.  .++++-.-.++...-+.|+... +...                    ...+.+.|+++.|.+++.-+.+
T Consensus       368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~  447 (840)
T KOG2003|consen  368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK  447 (840)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence            111111111  1111111111111112222100 0000                    0123345555555555554443


Q ss_pred             cCCCCC------------------------------------hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH
Q 009967          269 FLGKLD------------------------------------VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV  312 (521)
Q Consensus       269 ~~~~~~------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l  312 (521)
                      ...+.-                                    ......-.+.....|++++|.+.|++....|...-..|
T Consensus       448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal  527 (840)
T KOG2003|consen  448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL  527 (840)
T ss_pred             ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence            322211                                    11111111222346889999999999988777654444


Q ss_pred             H---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967          313 I---CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR  389 (521)
Q Consensus       313 i---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (521)
                      .   -.+-..|+.++|+..|-++..- +..+...+..+...|....+..+|.+++.++.  .-++.++.+...|.+.|-+
T Consensus       528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhc
Confidence            3   3466789999999999887652 23466677888888999999999999998874  3344678899999999999


Q ss_pred             cCCHHHHHHHHhh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          390 SGRFKEAKEFLYD-LP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       390 ~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      .|+-..|.+..-+ .. ++-+..+..-|..-|....-++.++.+|+++.-+.|+....-..++.++.+.|++..|.++++
T Consensus       605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk  684 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK  684 (840)
T ss_pred             ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            9999999987644 34 355677777777778888889999999999999999544444556777889999999999999


Q ss_pred             HHHhC
Q 009967          468 EMKEK  472 (521)
Q Consensus       468 ~m~~~  472 (521)
                      +..++
T Consensus       685 ~~hrk  689 (840)
T KOG2003|consen  685 DIHRK  689 (840)
T ss_pred             HHHHh
Confidence            97654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.72  E-value=1e-12  Score=124.03  Aligned_cols=455  Identities=12%  Similarity=0.037  Sum_probs=274.0

Q ss_pred             CCCCccchHHHHHHHhhcCCCchhhhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHHHHhH
Q 009967           24 APNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLFSRML  100 (521)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  100 (521)
                      ....+.+++-+....++.---+.+|.-+|++...++.|..++.+..   ..+...|-+-...--.+|+.+...++.++-.
T Consensus       388 elE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl  467 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL  467 (913)
T ss_pred             hccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3455666776666666642123338889999999999999987654   4577888887777788999998888877643


Q ss_pred             ----HCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C
Q 009967          101 ----LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS--NVFVGSAILDLYIKLSSIEEATRVFEDTHN--P  172 (521)
Q Consensus       101 ----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~  172 (521)
                          ..|+..+...|..=...|-..|..-.+..+....+..|+..  ...||+.-...|.+.+.++-|..+|....+  |
T Consensus       468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp  547 (913)
T KOG0495|consen  468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP  547 (913)
T ss_pred             HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence                46888888888887788888888888888888888777543  356777777888888888888888777665  2


Q ss_pred             -CchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009967          173 -NVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII  248 (521)
Q Consensus       173 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  248 (521)
                       +...|......--..|..+....+|++...   .....|......+...|+...|..++....+.. +-+...+...+.
T Consensus       548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK  626 (913)
T KOG0495|consen  548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK  626 (913)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence             233444444443444555555555554432   122333334444444455555555554444432 113334444444


Q ss_pred             HHHhhcchHHHHHHHHHH---------------------------------HHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967          249 AAANIAALGMGKSFHACA---------------------------------VKFLGKLDVFVGNSLISFYAKCGSMEDSL  295 (521)
Q Consensus       249 ~~~~~~~~~~a~~~~~~~---------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  295 (521)
                      .-.....++.|..+|...                                 ++.-+. -...|-.+.+.+-+.++++.|.
T Consensus       627 le~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  627 LEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             HhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHH
Confidence            444444455555554444                                 443221 2233444444444444444444


Q ss_pred             HHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967          296 LVFDKLTE--RN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP  372 (521)
Q Consensus       296 ~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  372 (521)
                      ..|..-.+  |+ +..|-.+...--+.|..-.|..++++..-.+ +-+...|...|+.-.+.|+.+.|..++.++.++++
T Consensus       706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp  784 (913)
T KOG0495|consen  706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP  784 (913)
T ss_pred             HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44444333  22 2234444444444444455555554444332 22333444444444455555555554444443332


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       373 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                        .+...|..-|.+..+.++-......+++-  +-|+...-.+...+....+++.|.+-|.+++..+|++..+|..+-..
T Consensus       785 --~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf  860 (913)
T KOG0495|consen  785 --SSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF  860 (913)
T ss_pred             --ccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence              23334444444444444433333333333  34555556666777888899999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCccCCcceEEEECC
Q 009967          453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS  487 (521)
Q Consensus       453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~  487 (521)
                      +.+.|.-++-.++++.....  .|..|..|.-+..
T Consensus       861 el~hG~eed~kev~~~c~~~--EP~hG~~W~avSK  893 (913)
T KOG0495|consen  861 ELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK  893 (913)
T ss_pred             HHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence            99999999999999887654  5677777775544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=8.4e-17  Score=148.10  Aligned_cols=258  Identities=19%  Similarity=0.160  Sum_probs=112.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 009967          210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL-PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC  288 (521)
Q Consensus       210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  288 (521)
                      .+...+.+.|++++|+++++.......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            3355666667777777776544333212333333 33444555566677777777776665544 56667777777 688


Q ss_pred             CCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 009967          289 GSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKGYSYFS  365 (521)
Q Consensus       289 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  365 (521)
                      +++++|.+++...-+  +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.++
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999998887654  566778888899999999999999999977632 34566678888888999999999999999


Q ss_pred             HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      ++....|  .++.....++..+...|+.+++.+++....  .+.+...|..+..++...|+.++|+..|+++....|+|+
T Consensus       171 ~al~~~P--~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  171 KALELDP--DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHHH-T--T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHcCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence            9986664  357788899999999999999888877643  134556788899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          444 SSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       444 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      .+...++.++...|+.++|.++.++..+
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            9999999999999999999999887643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.70  E-value=2.6e-12  Score=121.28  Aligned_cols=424  Identities=11%  Similarity=0.035  Sum_probs=342.2

Q ss_pred             hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      |-.+-....+.++|+-++.+..+   .+...|.    +|++-.-|+.|..++++..+. ++.+...|.+....--..|+.
T Consensus       382 LWKaAVelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~  456 (913)
T KOG0495|consen  382 LWKAAVELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNV  456 (913)
T ss_pred             HHHHHHhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCH
Confidence            66677777778888888877553   2334444    455666789999999999875 778888888777777788999


Q ss_pred             HHHHHHHHHH----HHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC------CCchhHHHHHHHHHcCCCHHHHH
Q 009967          125 NLGKQLHAWA----TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN------PNVVSYTTMICGLLKRERFEDAL  194 (521)
Q Consensus       125 ~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~  194 (521)
                      +.+.++...-    ...|+..+..-|-.=...|-..|..--+..+......      .--.+|..-...|.+.+.++-|.
T Consensus       457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car  536 (913)
T KOG0495|consen  457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR  536 (913)
T ss_pred             HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence            9988887764    4468888888888888888888888888777776654      23457888889999999999999


Q ss_pred             HHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 009967          195 KLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG  271 (521)
Q Consensus       195 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  271 (521)
                      .+|....+   .+...|...+..--..|..+....+|++.... ++-....+..........|++..|..++..+.+..+
T Consensus       537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p  615 (913)
T KOG0495|consen  537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP  615 (913)
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence            99998876   35567888777778889999999999999885 344455566667778889999999999999999887


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 009967          272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLL  348 (521)
Q Consensus       272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll  348 (521)
                      . +..++-+.+.....+.+++.|..+|.+...  ++...|..-+...--.++.++|.+++++..+.  .|+-. .|..+.
T Consensus       616 n-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG  692 (913)
T KOG0495|consen  616 N-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG  692 (913)
T ss_pred             C-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence            7 888999999999999999999999999875  77788888888888889999999999998874  46654 788888


Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL--PFDPGIGFWKALLGGCQIHSNVE  426 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~  426 (521)
                      ..+.+.++++.|...|..-....+  -.+..|-.|.+.--+.|.+-+|..++++.  +.+.+...|-..+..-.+.|+.+
T Consensus       693 Qi~e~~~~ie~aR~aY~~G~k~cP--~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  693 QIEEQMENIEMAREAYLQGTKKCP--NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCC--CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence            899999999999999987654443  44557888888889999999999999985  43556779999999999999999


Q ss_pred             HHHHHHHHHHhcCCC------------------------------CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 009967          427 LGEFAARRILALDPE------------------------------DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR  476 (521)
Q Consensus       427 ~A~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~  476 (521)
                      .|..+..++++--|.                              |+.++..++..+....+++.|++.|.+.++.+.+.
T Consensus       771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~  850 (913)
T KOG0495|consen  771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN  850 (913)
T ss_pred             HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            999999888764432                              56778888999999999999999999988765444


Q ss_pred             CCcceE
Q 009967          477 VPGCSW  482 (521)
Q Consensus       477 ~~~~~~  482 (521)
                      -..+.|
T Consensus       851 GD~wa~  856 (913)
T KOG0495|consen  851 GDAWAW  856 (913)
T ss_pred             chHHHH
Confidence            333333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.8e-12  Score=117.90  Aligned_cols=419  Identities=9%  Similarity=0.040  Sum_probs=315.6

Q ss_pred             cCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHH
Q 009967           54 ESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL  130 (521)
Q Consensus        54 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  130 (521)
                      .++++..|+.+|++...   .+...|--.+..-.++..+..|..+|++....=...|..-| -.+..=-..|++..|.++
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence            45777889999987653   56778888899999999999999999999874322333333 333333467999999999


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC------
Q 009967          131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH------  202 (521)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------  202 (521)
                      |+.-.+  ..|+...|++.++.-.+.+.++.|..++++..-  |++.+|.-...--.+.|....|..+|+...+      
T Consensus       164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~  241 (677)
T KOG1915|consen  164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE  241 (677)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence            999887  689999999999999999999999999998764  9999999888888899999999999998765      


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchHHHHHH--------HHHHHHcCCC
Q 009967          203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN--HSTLPCAIIAAANIAALGMGKSF--------HACAVKFLGK  272 (521)
Q Consensus       203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~  272 (521)
                      .+...+.+....-.++..++.|.-+|+-.+.+ ++.+  ...|......=-+-|+.......        ++..++.++ 
T Consensus       242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-  319 (677)
T KOG1915|consen  242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-  319 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-
Confidence            23455666667677788899999999988875 2222  33454555444556665544433        333344332 


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh---hHHHHHHHH--------HHHcCChHHHHHHHHHHHHCCCCC
Q 009967          273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNI---VTWNAVICG--------YAQNGRGEEAIEFFERMRINGIRP  339 (521)
Q Consensus       273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~~~~p  339 (521)
                      .|-.++--.++.-...|+.+...++|++...  |..   ..|.-.|-.        -....+.+.+.++++...+. ++-
T Consensus       320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH  398 (677)
T KOG1915|consen  320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH  398 (677)
T ss_pred             CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence            3667777788888888999999999999874  222   122222211        13468999999999999883 444


Q ss_pred             CHHHHHHHHHHH----HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 009967          340 NGVTLLGLLWAC----NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWK  413 (521)
Q Consensus       340 ~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~  413 (521)
                      ..+||..+--.|    .++.++..|.+++..++   |.-|...+|...|..-.+.+.+|.+..++++. ...| +..+|.
T Consensus       399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~  475 (677)
T KOG1915|consen  399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS  475 (677)
T ss_pred             ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence            455766543333    57789999999999887   55689999999999999999999999999984 3445 566899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcce
Q 009967          414 ALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS  481 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~  481 (521)
                      .....-...|+.+.|..+|+-+++...-  ....|-..+..-...|.++.|..+++++.+...-....+|
T Consensus       476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis  545 (677)
T KOG1915|consen  476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS  545 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence            9988888999999999999998874322  2346777888888999999999999999887543333333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=7.8e-13  Score=120.75  Aligned_cols=385  Identities=18%  Similarity=0.107  Sum_probs=256.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc-HHHHHHHHHHH
Q 009967           76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLY  153 (521)
Q Consensus        76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~  153 (521)
                      +-....-|.++|++++|++.|.+.++.  .|| +..|.....+|...|+++++.+--...++  +.|+ ...+..-..++
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAH  193 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHH
Confidence            334556678899999999999999884  577 77788888888999999999888877777  3454 44666667788


Q ss_pred             HcCCCHHHHHHHhhcCC---CCCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCh----------------------
Q 009967          154 IKLSSIEEATRVFEDTH---NPNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNV----------------------  205 (521)
Q Consensus       154 ~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~----------------------  205 (521)
                      -..|++++|..-..-..   .-+..+...++.-..+.--...+.+-+..=..   |+.                      
T Consensus       194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~  273 (606)
T KOG0547|consen  194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS  273 (606)
T ss_pred             HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence            88888887764221110   00000011111111111111122222221000   111                      


Q ss_pred             -hHHHHHHHHHHh--cC---ChHHHHHHHHHHHHC-CCCCChh----hHHHHHHH-------HHhhcchHHHHHHHHHHH
Q 009967          206 -VSWNAMIGGYSQ--TG---RNEEAVNLFIEMLRE-GLVPNHS----TLPCAIIA-------AANIAALGMGKSFHACAV  267 (521)
Q Consensus       206 -~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~-~~~p~~~----~~~~ll~~-------~~~~~~~~~a~~~~~~~~  267 (521)
                       .+...+..++..  .+   .+..|...+.+-... ...++..    -...+..+       +.-.|+.-.+..-++..+
T Consensus       274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I  353 (606)
T KOG0547|consen  274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI  353 (606)
T ss_pred             ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence             122222222211  11   233343333332111 1112111    00122222       234577888888888888


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHH
Q 009967          268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVT  343 (521)
Q Consensus       268 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~  343 (521)
                      +....++ ..|--+..+|....+.++.++.|+...+   .|+.+|..-.+.+.-.+++++|..-|++....  .|+ ...
T Consensus       354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~  430 (606)
T KOG0547|consen  354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYA  430 (606)
T ss_pred             hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHH
Confidence            8876643 3366777889999999999999999875   56678888888889999999999999998874  454 456


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---------HHHHH
Q 009967          344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG---------IGFWK  413 (521)
Q Consensus       344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---------~~~~~  413 (521)
                      |..+.-+..+.+.++++...|++.+.+.+  ..+.+|+.....+...++++.|.+.|+.. .+.|+         +.+..
T Consensus       431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP--~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K  508 (606)
T KOG0547|consen  431 YIQLCCALYRQHKIAESMKTFEEAKKKFP--NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK  508 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence            66666667788999999999999977765  55678999999999999999999999873 33443         22333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      .++....+ +|+..|+.+++++++++|....+|..++..-.+.|+.++|+++|++-.
T Consensus       509 a~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  509 ALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333 899999999999999999999999999999999999999999999753

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=2.2e-12  Score=115.93  Aligned_cols=313  Identities=12%  Similarity=0.110  Sum_probs=205.9

Q ss_pred             cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHH--HcCCCChHHH-HHHHHHHHHhCCCCcHHHHHHH
Q 009967           73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS--STALEDLNLG-KQLHAWATKVGLQSNVFVGSAI  149 (521)
Q Consensus        73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l  149 (521)
                      +.+-|.++.. ..+|....+.-+|+.|.+.|++.+...-..+++.  |....++.-+ ++.|-.|...| +.+..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence            4566666664 5568899999999999999988887776666654  3344444332 33444455444 3333344   


Q ss_pred             HHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHH
Q 009967          150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAV  225 (521)
Q Consensus       150 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~  225 (521)
                           +.|++.+   ++-+....+..++..||.++++--..+.|.+++++...    -+..+||.+|.+-.-..+    .
T Consensus       191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K  258 (625)
T KOG4422|consen  191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K  258 (625)
T ss_pred             -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence                 4555444   33334444566788888888888888888888887764    366777777765433222    6


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHH----HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhh
Q 009967          226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG----KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED-SLLVFDK  300 (521)
Q Consensus       226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~  300 (521)
                      +++.+|....+.||..||++++.+.++.|+++.+    .+++.+|.+.|++|...+|..++..+++-++..+ |..++.+
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d  338 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND  338 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence            7778888888888888888888888888876544    5677788888888888888888888888777644 4444444


Q ss_pred             cCC------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhhccHHHHH
Q 009967          301 LTE------------RNIVTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRPNG---VTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       301 ~~~------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~---~~~~~ll~~~~~~~~~~~a~  361 (521)
                      +..            .|...|...+..|....+.+-|.++-.-+...    -+.|+.   .-|..+....+.....+...
T Consensus       339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~  418 (625)
T KOG4422|consen  339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL  418 (625)
T ss_pred             HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            331            23345666677777777777777766554331    122332   24556666667777777777


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      ..|+.+. -.-.-|+..+...++++..-.|+++-.-+++.++
T Consensus       419 ~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~  459 (625)
T KOG4422|consen  419 KWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDS  459 (625)
T ss_pred             HHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence            7777775 4444466666667777777777776666666554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.65  E-value=5.2e-13  Score=130.68  Aligned_cols=311  Identities=14%  Similarity=0.125  Sum_probs=192.7

Q ss_pred             CCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          157 SSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEM---PHRNVVSWNAMIGGYSQTGRNEEAVNLFIE  230 (521)
Q Consensus       157 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  230 (521)
                      |++++|.+++.+++.   .+...|.+|...|-..|+.+++...+-..   ...|...|..+.....+.|++++|.-.|.+
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r  232 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR  232 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            555555555555543   23344555555555555555555444332   223445555555555555555555555555


Q ss_pred             HHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHhhcCC---
Q 009967          231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN----SLISFYAKCGSMEDSLLVFDKLTE---  303 (521)
Q Consensus       231 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~---  303 (521)
                      ..+.. +++...+---...|-+.|+...|...+.++....++.+..-+.    ..++.+...++-+.|.+.++....   
T Consensus       233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~  311 (895)
T KOG2076|consen  233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK  311 (895)
T ss_pred             HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence            55532 2233333334445555555555555555555554433322222    234445555555666666665543   


Q ss_pred             --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHHHhh
Q 009967          304 --RNIVTWNAVICGYAQNGRGEEAIEFFERMRIN---------------------------GIRPNGVTLLGLLWACNHT  354 (521)
Q Consensus       304 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------------------~~~p~~~~~~~ll~~~~~~  354 (521)
                        -+...++.++..+.+...++.|......+...                           ++.++... ..+.-++.+.
T Consensus       312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L  390 (895)
T KOG2076|consen  312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL  390 (895)
T ss_pred             ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence              23345666667777777777777666665541                           12222222 1222233344


Q ss_pred             ccHHHHHHHHHHchHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 009967          355 GLVEKGYSYFSQAKLEDP--GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF---DPGIGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       355 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      +..+....+..... ...  ...++..|.-+.++|...|++.+|+.++..+..   ..+...|-.+...|...|.+++|+
T Consensus       391 ~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~  469 (895)
T KOG2076|consen  391 KERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI  469 (895)
T ss_pred             cccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence            44444444444443 333  344567899999999999999999999998753   234568999999999999999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +.|++++...|++..+-..|+..+.+.|+.++|.+++..+.
T Consensus       470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999976

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=4e-12  Score=114.31  Aligned_cols=349  Identities=15%  Similarity=0.116  Sum_probs=211.4

Q ss_pred             CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 009967           71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL  150 (521)
Q Consensus        71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  150 (521)
                      ....+|..+|.++++--..+.|.+++++-....++.+..+||.+|.+-.-.    ...++..+|....+.||..|+|+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence            345789999999999999999999999998887899999999999874322    2378899999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHh----hcCCC----CCchhHHHHHHHHHcCCCHHH-HHHHHhhCCC------------CChhHHH
Q 009967          151 DLYIKLSSIEEATRVF----EDTHN----PNVVSYTTMICGLLKRERFED-ALKLFQEMPH------------RNVVSWN  209 (521)
Q Consensus       151 ~~~~~~g~~~~a~~~~----~~~~~----~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~------------~~~~~~~  209 (521)
                      .+..+.|+++.|.+.+    .+|.+    |...+|..+|..+.+.++..+ +..+..++..            .|...|.
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~  360 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ  360 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence            9999999988776554    33332    777777777777777666543 3333322211            2344555


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCC----CCCCh---hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          210 AMIGGYSQTGRNEEAVNLFIEMLREG----LVPNH---STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       210 ~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      ..+..|.+..+.+-|.++-.-+....    +.|+.   .-|..+....++....+.....|+.++-.-+-|+..+...++
T Consensus       361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l  440 (625)
T KOG4422|consen  361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL  440 (625)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence            66666666666666666544433211    22221   223445555555556666666666666555555666666666


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhccHHH
Q 009967          283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV---TLLGLLWACNHTGLVEK  359 (521)
Q Consensus       283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~  359 (521)
                      ++..-.|.++-..+++..+..-+-            .-+-+--++++..|......|+..   -+.....-|+  -++.+
T Consensus       441 rA~~v~~~~e~ipRiw~D~~~~gh------------t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e  506 (625)
T KOG4422|consen  441 RALDVANRLEVIPRIWKDSKEYGH------------TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKE  506 (625)
T ss_pred             HHHhhcCcchhHHHHHHHHHHhhh------------hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHH
Confidence            666556666655555555432110            011112223333333333333322   2222221111  11111


Q ss_pred             H-HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009967          360 G-YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-------PFDPGIGFWKALLGGCQIHSNVELGEFA  431 (521)
Q Consensus       360 a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~  431 (521)
                      + ...-.+++ .  ....+...+..+..+.|.|+.++|.+++..+       +..|.......++..-...++.-.|...
T Consensus       507 ~~e~~~~R~r-~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~  583 (625)
T KOG4422|consen  507 AYESQPIRQR-A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV  583 (625)
T ss_pred             HHHhhHHHHH-h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence            1 11222222 2  2245556777888888999999988888654       2344444555666667777788888888


Q ss_pred             HHHHHhcCC
Q 009967          432 ARRILALDP  440 (521)
Q Consensus       432 ~~~~~~~~p  440 (521)
                      ++-+...+-
T Consensus       584 lQ~a~~~n~  592 (625)
T KOG4422|consen  584 LQLASAFNL  592 (625)
T ss_pred             HHHHHHcCc
Confidence            887766543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=6.1e-12  Score=114.52  Aligned_cols=432  Identities=14%  Similarity=0.100  Sum_probs=320.3

Q ss_pred             CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 009967           72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD  151 (521)
Q Consensus        72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  151 (521)
                      +...|--...--..++++..|.++|++..... ..+...|...+..=.+...+..|..+++..+..- |--...|--.+-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y  149 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence            44556555566666789999999999998754 5566677777777788999999999999998853 222234444444


Q ss_pred             HHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHH
Q 009967          152 LYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNL  227 (521)
Q Consensus       152 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  227 (521)
                      .--..|++..|.++|++-.+  |+...|.+.|+--.+...++.|..++++..  .|++.+|--.+..-.+.|+...|..+
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence            55568999999999999876  999999999999999999999999999865  59999999999999999999999999


Q ss_pred             HHHHHHCCCCCCh----hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH----
Q 009967          228 FIEMLREGLVPNH----STLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVF----  298 (521)
Q Consensus       228 ~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~----  298 (521)
                      |....+.  .-|.    ..|.+...-=.....++.|..+++.++..-+.-. ...|..+...--+-|+.....+..    
T Consensus       230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            9988763  1233    3334444444566788999999999988755432 445666666556667765555433    


Q ss_pred             ----hhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHH---HhhccHHHHH
Q 009967          299 ----DKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--T-----LLGLLWAC---NHTGLVEKGY  361 (521)
Q Consensus       299 ----~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~-----~~~ll~~~---~~~~~~~~a~  361 (521)
                          +.+.+.   |..+|--.+..--..|+.+...++|++.... ++|-..  .     |..+=-+|   ....+.+.+.
T Consensus       308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr  386 (677)
T KOG1915|consen  308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR  386 (677)
T ss_pred             hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                222233   4457777788778889999999999999875 566332  2     22222222   3568899999


Q ss_pred             HHHHHchHhCCCCCChhHHHHH----HHHHHhcCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967          362 SYFSQAKLEDPGMLKPEHYACM----VDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL  436 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  436 (521)
                      ++|+....  -++....+|.-+    .....++.++..|.+++.. +..-|....|...|..-.+.++++.+..+|++.+
T Consensus       387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999873  222334455544    4445688999999999987 4557999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHH
Q 009967          437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE  514 (521)
Q Consensus       437 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  514 (521)
                      +.+|.+..+|...+..-...|+++.|..+|+-.+.+..-..|...|--+    -.|-....-+..++.+|+.|=+-..
T Consensus       465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY----IdFEi~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY----IDFEIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh----hhhhhhcchHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999988765544444333211    1233333456677777776544433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=3.1e-14  Score=134.88  Aligned_cols=270  Identities=11%  Similarity=0.042  Sum_probs=170.3

Q ss_pred             CHHHHHHHhhcCCC--CCc-hhHHHHHHHHHcCCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHH
Q 009967          158 SIEEATRVFEDTHN--PNV-VSYTTMICGLLKRERFEDALKLFQEMPH------RNVVSWNAMIGGYSQTGRNEEAVNLF  228 (521)
Q Consensus       158 ~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~  228 (521)
                      +..+|...|+++..  +|+ .....+..+|...+++++|+++|+.+.+      .+...|.+.+..+-+.    -++..+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            56788888888654  333 4455677888899999999999988875      4677888877665332    122222


Q ss_pred             -HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 009967          229 -IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---  304 (521)
Q Consensus       229 -~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  304 (521)
                       +.+...  .|+                                  .+.+|.++.++|.-+++.+.|++.|++..+-   
T Consensus       410 aq~Li~~--~~~----------------------------------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~  453 (638)
T KOG1126|consen  410 AQDLIDT--DPN----------------------------------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR  453 (638)
T ss_pred             HHHHHhh--CCC----------------------------------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence             233332  233                                  5566666666776667777777777666652   


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967          305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM  383 (521)
Q Consensus       305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  383 (521)
                      ...+|+.+..-+.....+|.|...|+....  +.|.. .+|..+...|.+.++++.|+-.|+++.+..+  .+......+
T Consensus       454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP--~nsvi~~~~  529 (638)
T KOG1126|consen  454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP--SNSVILCHI  529 (638)
T ss_pred             cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc--cchhHHhhh
Confidence            334666666666666667777777766554  23333 2566666667777777777777776653332  233445556


Q ss_pred             HHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967          384 VDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN  461 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  461 (521)
                      ...+.+.|+.|+|++++++.. . +.|+..--.-+..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.
T Consensus       530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence            666667777777777776632 1 23344444445556666777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHh
Q 009967          462 VSNIRREMKE  471 (521)
Q Consensus       462 A~~~~~~m~~  471 (521)
                      |+.-|--+.+
T Consensus       610 Al~~f~~A~~  619 (638)
T KOG1126|consen  610 ALLHFSWALD  619 (638)
T ss_pred             HHHhhHHHhc
Confidence            7766655543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.62  E-value=1.6e-12  Score=125.33  Aligned_cols=248  Identities=11%  Similarity=0.043  Sum_probs=153.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 009967          214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLP--CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM  291 (521)
Q Consensus       214 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  291 (521)
                      +..+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|...++.+.+..+. ++.....+...|.+.|+|
T Consensus       127 aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        127 AAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhH
Confidence            335555555555555555542  23332222  2234445555555555555555555533 556666677777777777


Q ss_pred             HHHHHHHhhcCCCC---h--------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 009967          292 EDSLLVFDKLTERN---I--------VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG  360 (521)
Q Consensus       292 ~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  360 (521)
                      ++|.+++..+.+..   .        .+|..++.......+.+...++|+.+-+. .+.+......+...+...|+.++|
T Consensus       204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A  282 (398)
T PRK10747        204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA  282 (398)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence            77777777666411   1        12333333334444556666666665332 234566777777788888888888


Q ss_pred             HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      ..++++... .+  +++...  ++......++.+++.+.+++.. ..|+ ......+...|...|++++|.+.|+++.+.
T Consensus       283 ~~~L~~~l~-~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        283 QQIILDGLK-RQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             HHHHHHHHh-cC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            888887753 32  444322  2233334578888888777642 3444 445667777788888888888888888888


Q ss_pred             CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       439 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      .| +...+..++.++.+.|+.++|.+++++-..
T Consensus       358 ~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        358 RP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88 556677888888888888888888887543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=2.2e-13  Score=129.28  Aligned_cols=245  Identities=13%  Similarity=0.059  Sum_probs=181.7

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967          220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSMEDSLLV  297 (521)
Q Consensus       220 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~  297 (521)
                      +..+|+..|.....+ +.-+......+..+|...+++++++++|+.+.+..+  .-+..+|.+.+..+-+.=...---+-
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            345666666663332 222334445556666666677777777666665432  12566677666544332222111112


Q ss_pred             HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC
Q 009967          298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK  376 (521)
Q Consensus       298 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  376 (521)
                      +-.+....+.+|-++..+|.-+++.+.|++.|++....  .| ...+|+.+.+-+....++|.|...|+.+.   +  .+
T Consensus       413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~  485 (638)
T KOG1126|consen  413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VD  485 (638)
T ss_pred             HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CC
Confidence            22223356789999999999999999999999999874  46 67789988888999999999999999876   2  34


Q ss_pred             hhH---HHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967          377 PEH---YACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN  451 (521)
Q Consensus       377 ~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  451 (521)
                      +..   |-.|...|.+.++++.|+-.|++. .+.|. ......+...+.+.|+.++|+++++++.-++|.|+..-..-+.
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            444   455778899999999999999985 45554 4466667777899999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhC
Q 009967          452 ALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       452 ~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .+...+++++|++.++++++.
T Consensus       566 il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHh
Confidence            999999999999999999864

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.60  E-value=4.1e-12  Score=122.42  Aligned_cols=276  Identities=12%  Similarity=-0.033  Sum_probs=180.8

Q ss_pred             CCCHHHHHHHhhcCCC--CCchhHHHH-HHHHHcCCCHHHHHHHHhhCCC--CChhHHH--HHHHHHHhcCChHHHHHHH
Q 009967          156 LSSIEEATRVFEDTHN--PNVVSYTTM-ICGLLKRERFEDALKLFQEMPH--RNVVSWN--AMIGGYSQTGRNEEAVNLF  228 (521)
Q Consensus       156 ~g~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~  228 (521)
                      .|+++.|++.+....+  +++..+..+ .....+.|+++.|.+.+.++.+  |+.....  .....+...|+++.|...+
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l  176 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV  176 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4555555555544433  112222222 2222455555555555555544  2221111  2244556666666666666


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967          229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-------FVGNSLISFYAKCGSMEDSLLVFDKL  301 (521)
Q Consensus       229 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~  301 (521)
                      +++.+.. +-++..+..+...+.+.|+++.+..++..+.+.+..++.       ..|..++.......+.+...++++.+
T Consensus       177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l  255 (398)
T PRK10747        177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ  255 (398)
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            6665543 223344555556666666666666666666665544222       12333344444555667777788877


Q ss_pred             CC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh
Q 009967          302 TE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE  378 (521)
Q Consensus       302 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  378 (521)
                      .+   .++.....+...+...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+..+...+.++  -|+.
T Consensus       256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~  329 (398)
T PRK10747        256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG--DTPL  329 (398)
T ss_pred             CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC--CCHH
Confidence            64   57778888999999999999999999998874  4555322  23334456899999999999876665  5566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      .+..+...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7889999999999999999999984 46899999999999999999999999999998774

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.60  E-value=1.1e-11  Score=121.64  Aligned_cols=315  Identities=12%  Similarity=0.063  Sum_probs=174.3

Q ss_pred             cCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHH
Q 009967           86 QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV  165 (521)
Q Consensus        86 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  165 (521)
                      .|++++|.+++.+..+.. +-+...|..|...|-+.|+.+++...+-.+.-.. +.|...|..+.....+.|+++.|.-.
T Consensus       152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence            377777777777777654 4566677777777777777777766655444332 45567777777777777777777777


Q ss_pred             hhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCCh--------hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967          166 FEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV--------VSWNAMIGGYSQTGRNEEAVNLFIEMLRE  234 (521)
Q Consensus       166 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  234 (521)
                      |.+..+   ++...+..-...|-+.|+...|.+.|.++.+-++        ..-..++..+...++.+.|.+.++.....
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            777765   3333444455667777777777777777655211        12233445556666667777766665552


Q ss_pred             -CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC---------------------------CChhH-HHHHHHHH
Q 009967          235 -GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK---------------------------LDVFV-GNSLISFY  285 (521)
Q Consensus       235 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~-~~~l~~~~  285 (521)
                       +-..+...++.++..+.+...++.+.............                           ++..+ ...+.-..
T Consensus       310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~  389 (895)
T KOG2076|consen  310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH  389 (895)
T ss_pred             ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence             22334445556666666666666665555544431111                           12222 11111112


Q ss_pred             HhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967          286 AKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                      .+.++..+++..|.....    .++..|.-+..+|...|++.+|..+|..+......-+...|..+..+|...|..+.|.
T Consensus       390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~  469 (895)
T KOG2076|consen  390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI  469 (895)
T ss_pred             ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence            223333333333222221    2233455555566666666666666666555433334445555555566666666666


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP  404 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  404 (521)
                      +.|+.+....+.  +...--.|...+.+.|+.++|.+.+..+.
T Consensus       470 e~y~kvl~~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  470 EFYEKVLILAPD--NLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHhcCCC--chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            666665544432  22233445555556666666666665543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3.4e-11  Score=109.60  Aligned_cols=329  Identities=12%  Similarity=0.007  Sum_probs=239.0

Q ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChh-HHHHHHHHHHh
Q 009967          139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV-SWNAMIGGYSQ  217 (521)
Q Consensus       139 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~  217 (521)
                      ...|...+-.....+.+.|..+.|+..|......-+..|.+.+....-..+.+.+..+...+...+.. .--.+..++..
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e  239 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE  239 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence            34455544444555667788888888887776644445554444443344444444444333332221 11223456666


Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHH
Q 009967          218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK--LDVFVGNSLISFYAKCGSMEDSL  295 (521)
Q Consensus       218 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~  295 (521)
                      ..+.+++..-+......|.+-+...-+....+.....++++|..+|+++.+..+-  -|..+|..++-.-....++.---
T Consensus       240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA  319 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA  319 (559)
T ss_pred             HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence            6678888888888888876555555555666667788999999999999988432  15566666654433322332222


Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967          296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM  374 (521)
Q Consensus       296 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  374 (521)
                      +..-.+.+-.+.|...+..-|.-.++.++|...|++..+.+  |.. ..|+.+.+-|...++...|.+-++++.+-++  
T Consensus       320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--  395 (559)
T KOG1155|consen  320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP--  395 (559)
T ss_pred             HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--
Confidence            22233344556677788888889999999999999999854  544 4677777889999999999999999985554  


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      .|-..|-.|.++|.-.+...-|+-+|++.. .+| |...|.+|...|.+.++.++|+..|.+++..+-.+..++..++..
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL  475 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL  475 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            567789999999999999999999999853 455 677999999999999999999999999999887788999999999


Q ss_pred             HHhcCChHHHHHHHHHHHh
Q 009967          453 LSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       453 ~~~~g~~~~A~~~~~~m~~  471 (521)
                      |.+.++.++|.+++++-++
T Consensus       476 ye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  476 YEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHH
Confidence            9999999999999998765

>TIGR00540 hemY_coli hemY protein

Probab=99.58  E-value=1.1e-11  Score=120.22  Aligned_cols=222  Identities=11%  Similarity=-0.107  Sum_probs=102.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhH-------HHHHHHH
Q 009967          212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV-------GNSLISF  284 (521)
Q Consensus       212 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~  284 (521)
                      ...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+....       +..++..
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555543 11223344444555555555555555555554443211111       1111111


Q ss_pred             HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHH-HHHHHhhccHH
Q 009967          285 YAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL--LGL-LWACNHTGLVE  358 (521)
Q Consensus       285 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l-l~~~~~~~~~~  358 (521)
                      -......+...+.+....+   .++..+..+...+...|++++|.+++++..+..  ||....  ..+ .......++.+
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~  316 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE  316 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence            1111222333334444432   355566666666666666666666666666542  333210  111 11122334555


Q ss_pred             HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD---LPFDPGIGFWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      .+.+.+++..+..+..|+.....++...+.+.|++++|.+.|+.   ....|+...+..+...+...|+.++|.+++++.
T Consensus       317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555544443222223444555555555555555555552   223455554445555555555555555555554


Q ss_pred             H
Q 009967          436 L  436 (521)
Q Consensus       436 ~  436 (521)
                      +
T Consensus       397 l  397 (409)
T TIGR00540       397 L  397 (409)
T ss_pred             H
Confidence            3

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.57  E-value=2.8e-14  Score=131.40  Aligned_cols=160  Identities=17%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      ...+..++..+.+.++++++..+++.+.... ..++...|......+.+.|+.+.|...++.+++..+. +..+.+.++.
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~  188 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAW  188 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence            3334444445555555555555555544321 1222233333333333333333333333333333322 3344444444


Q ss_pred             HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 009967          284 FYAKCGSMEDSLLVFDKLT---ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG  360 (521)
Q Consensus       284 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  360 (521)
                      .+...|+.+++.+++....   ..|+..+..+..+|...|+.++|..+|++..+.. +.|......+..++...|+.++|
T Consensus       189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------
T ss_pred             HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            4444444444333333332   1333344444444444445555555554444421 12333344444444444444444


Q ss_pred             HHHHHH
Q 009967          361 YSYFSQ  366 (521)
Q Consensus       361 ~~~~~~  366 (521)
                      .++..+
T Consensus       268 ~~~~~~  273 (280)
T PF13429_consen  268 LRLRRQ  273 (280)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            444443

>TIGR00540 hemY_coli hemY protein

Probab=99.57  E-value=1e-11  Score=120.41  Aligned_cols=283  Identities=12%  Similarity=0.001  Sum_probs=202.1

Q ss_pred             HcCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhhcchHHH
Q 009967          185 LKRERFEDALKLFQEMPH--RN-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS--TLPCAIIAAANIAALGMG  259 (521)
Q Consensus       185 ~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a  259 (521)
                      ...|+++.|.+.+.+..+  |+ ...+-....++...|+++.|.+.+.+..+..  |+..  .-......+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence            356777777777776654  33 2344555678888999999999999987743  5553  333457788889999999


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHH----HHHHHHHcCChHHHHHHHHHH
Q 009967          260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNA----VICGYAQNGRGEEAIEFFERM  332 (521)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~----li~~~~~~~~~~~A~~~~~~m  332 (521)
                      ...++.+.+..+. ++.+...+...+.+.|+++.|.+.+..+.+   .+...+..    ........+..+++.+.+..+
T Consensus       173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999866 678888999999999999999999999885   23333321    111123333333334455555


Q ss_pred             HHCC---CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 009967          333 RING---IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG  408 (521)
Q Consensus       333 ~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~  408 (521)
                      ....   .+.+...+..+...+...|+.++|.+.+++..+..+-.+...............++.+.+.+.+++. +..|+
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~  331 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD  331 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence            4432   1136778888888999999999999999999755542222111111122223457788888888763 33444


Q ss_pred             -H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          409 -I--GFWKALLGGCQIHSNVELGEFAAR--RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       409 -~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                       +  ....++...+.+.|++++|.+.|+  ...+..| ++..+..++..+.+.|+.++|.+++++...
T Consensus       332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             3  566788899999999999999999  5667888 555677999999999999999999998543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=5.6e-12  Score=109.42  Aligned_cols=300  Identities=13%  Similarity=0.131  Sum_probs=191.5

Q ss_pred             CCCHHHHHHHhhcCCCCCchhH---HHHHHHHHcCCCHHHHHHHHhhCCC-CCh------hHHHHHHHHHHhcCChHHHH
Q 009967          156 LSSIEEATRVFEDTHNPNVVSY---TTMICGLLKRERFEDALKLFQEMPH-RNV------VSWNAMIGGYSQTGRNEEAV  225 (521)
Q Consensus       156 ~g~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~a~  225 (521)
                      .++.++|...|-+|.+.|..++   -+|.+.|-+.|..|.|+++-+.+.+ ||.      .+...|..-|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            4456666666666655333332   3445555555555555555554443 222      12333444444555555555


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 009967          226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN  305 (521)
Q Consensus       226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  305 (521)
                      .+|..+.+.                                   +.- -......|+..|-...+|++|+++-+++.+.+
T Consensus       128 ~~f~~L~de-----------------------------------~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~  171 (389)
T COG2956         128 DIFNQLVDE-----------------------------------GEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLG  171 (389)
T ss_pred             HHHHHHhcc-----------------------------------hhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence            555554442                                   211 33445567777777777777777777665433


Q ss_pred             hh--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC
Q 009967          306 IV--------TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK  376 (521)
Q Consensus       306 ~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  376 (521)
                      ..        .|--+...+....+.+.|..++++..+.+  |+.+ .-..+.+.....|+++.|.+.++.+. ..+..--
T Consensus       172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl  248 (389)
T COG2956         172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVL-EQNPEYL  248 (389)
T ss_pred             CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHH-HhChHHH
Confidence            32        34445555556778888898888887754  4443 33455567888899999999998886 4443334


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      +.+...|..+|...|+.++...++.++ ...++...-..+...-....-.+.|...+.+-+...| +...+..++.....
T Consensus       249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~  327 (389)
T COG2956         249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLA  327 (389)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhc
Confidence            557788889999999999988888774 4455655555566655666677888888888888888 66666666665443


Q ss_pred             ---cCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecC
Q 009967          456 ---AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG  495 (521)
Q Consensus       456 ---~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~  495 (521)
                         .|...+-...+++|+...++..|.+......-..+.+.=.
T Consensus       328 daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~  370 (389)
T COG2956         328 DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWH  370 (389)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeee
Confidence               3568888899999998888888887777666655555433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.7e-11  Score=110.18  Aligned_cols=282  Identities=12%  Similarity=0.082  Sum_probs=184.6

Q ss_pred             HHHHcCCCHHHHHHHhhcCCC---CCchhHH-HHHHHHHcCCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCC
Q 009967          151 DLYIKLSSIEEATRVFEDTHN---PNVVSYT-TMICGLLKRERFEDALKLFQEMPHR------NVVSWNAMIGGYSQTGR  220 (521)
Q Consensus       151 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~  220 (521)
                      .++-...+.+++..-.+...+   |+..-+- ....+.-...++++|+.+|+++.+.      |..+|..++-.-  ..+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence            344444455555544444433   2222222 2223334455666666666666552      445565554332  221


Q ss_pred             hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967          221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK  300 (521)
Q Consensus       221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  300 (521)
                      ..  +.++.+-...--+--+.|.-.+.+-|+-.++.++|..+|+.+++.++. ....|+.+.+-|...++...|.+.+++
T Consensus       313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            11  111111111101233446666677777777777888888877777655 667788888889999999999999998


Q ss_pred             cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh
Q 009967          301 LTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP  377 (521)
Q Consensus       301 ~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  377 (521)
                      +.+   .|-..|-.+.++|.-.+.+.-|+-.|++..... +-|...|..|..+|.+.++.++|+..|.++. ..+ ..+.
T Consensus       390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai-~~~-dte~  466 (559)
T KOG1155|consen  390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI-LLG-DTEG  466 (559)
T ss_pred             HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH-hcc-ccch
Confidence            876   456788889999999999999999999888742 3356788999999999999999999999886 333 1355


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDLP--------FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      ..+..|.+.|-+.++.++|...+.+-.        ..|. ..+..-|..-+.+.+++++|.........-++
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~  538 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET  538 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence            778889999999999999988887621        1332 22333355667888999999888777766543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=6.8e-11  Score=110.32  Aligned_cols=262  Identities=15%  Similarity=0.085  Sum_probs=214.6

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      .++........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+++.-+. .+.+|-++.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence            355666677778888999999999999998864 456666777777889999988888888888877655 677888888


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHH
Q 009967          283 SFYAKCGSMEDSLLVFDKLTERNI---VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVE  358 (521)
Q Consensus       283 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~  358 (521)
                      -.|.-.|+..+|++.|.+...-|.   ..|-.+..+|+-.|..|+|...+....+.  .|.. .-+..+.--|.+.++.+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHH
Confidence            888889999999999999876443   58999999999999999999999987763  2222 22333444588899999


Q ss_pred             HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 009967          359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--------FDP-GIGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      .|.++|.++....+  .|+.+++-+.-.....+.+.+|..+|+...        ..+ -..+++.|..+|.+.+.+++|+
T Consensus       398 LAe~Ff~~A~ai~P--~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  398 LAEKFFKQALAIAP--SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHhcCC--CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            99999999875554  466678888777778899999999998632        122 3447888999999999999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      ..+++++.+.|.++.++..++-+|...|+++.|++.|.+..
T Consensus       476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999855

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=7.3e-11  Score=108.13  Aligned_cols=383  Identities=11%  Similarity=0.014  Sum_probs=255.6

Q ss_pred             hhcccCCChhHHHHHhccCC--CCC-cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-hhhHHHHHHHHcCCCChH
Q 009967           50 SCGSESDKFSSVHQVFDEVP--DLN-VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        50 ~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~  125 (521)
                      .-|-++|++++|++.+....  .|+ +.-|......|..-|+|+++.+---+..+.  .|+ +-.+..-.+++-..|+++
T Consensus       123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~  200 (606)
T KOG0547|consen  123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD  200 (606)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence            36678999999999998765  366 788999999999999999998887777764  454 335556666777788887


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHH-----------------
Q 009967          126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLL-----------------  185 (521)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~-----------------  185 (521)
                      +|+.=....--.+--.+..+--.+=+.+-+.| ...+.+-+..-..   |+.....+....+.                 
T Consensus       201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~  279 (606)
T KOG0547|consen  201 EALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA  279 (606)
T ss_pred             HHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence            77543322211111111111111111111111 1223333331111   22222222111111                 


Q ss_pred             --------cC---CCHHHHHHHHhhCC-------CCC---------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 009967          186 --------KR---ERFEDALKLFQEMP-------HRN---------VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP  238 (521)
Q Consensus       186 --------~~---g~~~~a~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p  238 (521)
                              ..   ..+..|.+.+.+-.       ..+         ..+...-...+.-.|+.-.|..-|+......  |
T Consensus       280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~  357 (606)
T KOG0547|consen  280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--P  357 (606)
T ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--c
Confidence                    00   12333333332211       111         1223333334556789999999999998865  3


Q ss_pred             Chhh-HHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHH
Q 009967          239 NHST-LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI---VTWNAVIC  314 (521)
Q Consensus       239 ~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~  314 (521)
                      .... |.-+...|....+.......|+.+.+.++. ++.+|..-.+++.-.++++.|..-|++...-++   ..|-.+..
T Consensus       358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~  436 (606)
T KOG0547|consen  358 AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC  436 (606)
T ss_pred             ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence            3333 777788899999999999999999998877 778888888888889999999999999987443   45555666


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC------CCChhHHHHHHHHHH
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG------MLKPEHYACMVDLLS  388 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~  388 (521)
                      +..+.+.+++++..|++..+. ++.-...|+.....+...++++.|.+.|+..+...+.      .+.+.+..+++..-.
T Consensus       437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw  515 (606)
T KOG0547|consen  437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW  515 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence            666889999999999998875 4445568888999999999999999999998744433      233334444444444


Q ss_pred             hcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          389 RSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       389 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      + +++..|.+++++. .+.|. ...+..|...-.+.|+.++|+++|++...+-.
T Consensus       516 k-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  516 K-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             h-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4 8999999999985 44554 34889999999999999999999999988655

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.50  E-value=1.2e-10  Score=104.46  Aligned_cols=282  Identities=15%  Similarity=0.091  Sum_probs=180.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC----CchhHHHHHHHHHcCCCHHHHHHH
Q 009967          121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP----NVVSYTTMICGLLKRERFEDALKL  196 (521)
Q Consensus       121 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~  196 (521)
                      .|++.+|++....-.+.+ +.....|..-+.+--..|+.+.+-.++.+.-++    +...+-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            466666666666555544 222233334444555556666666666555441    222333444445555555555554


Q ss_pred             HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 009967          197 FQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL  273 (521)
Q Consensus       197 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  273 (521)
                      ++++.+   .++........+|.+.|++.....++..+.+.|.-.++..-                            ..
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence            444332   34455555555555555555555555555555533322110                            00


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      ...+++.+++-....+..+.-...++....   .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-.    ..-.
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~  303 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP  303 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence            234566667666666666666667777763   567777888888999999999999999998887766622    2224


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      +.+.++.+.-.+..++-....+..|  ..+.+|...|.+.+.|.+|.+.|+. ++..|+..+|.-+..++.+.|+..+|.
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence            5667777777777777665666444  6788899999999999999998886 456888888998999999999999999


Q ss_pred             HHHHHHHh
Q 009967          430 FAARRILA  437 (521)
Q Consensus       430 ~~~~~~~~  437 (521)
                      +..++.+.
T Consensus       382 ~~r~e~L~  389 (400)
T COG3071         382 QVRREALL  389 (400)
T ss_pred             HHHHHHHH
Confidence            88888775

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=8.4e-11  Score=102.26  Aligned_cols=282  Identities=11%  Similarity=0.093  Sum_probs=192.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-CCch------hHHHHHHHHHcCCCHHHH
Q 009967          121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVV------SYTTMICGLLKRERFEDA  193 (521)
Q Consensus       121 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~a  193 (521)
                      ..+.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|+|+++-..+.+ ||..      ....|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            356777777777777733 44555666777777777888888777777665 4432      233455667778888888


Q ss_pred             HHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 009967          194 LKLFQEMPHR---NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL  270 (521)
Q Consensus       194 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  270 (521)
                      +.+|..+.+.   -..+...|+..|-...+|++|+++-+++.+.+-.+...    -                        
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----e------------------------  178 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----E------------------------  178 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----H------------------------
Confidence            8888888763   23567778999999999999999999888865333211    1                        


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967          271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL  347 (521)
Q Consensus       271 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  347 (521)
                         -...|.-|...+....+.+.|...+.+..+.   .+..--.+...+...|+++.|.+.|+...+.+..--..+...|
T Consensus       179 ---IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         179 ---IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             ---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence               1233555666666777888888888877653   2334445667788888888888888888886533334577788


Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHh---cC
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL-YDLPFDPGIGFWKALLGGCQI---HS  423 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~---~g  423 (521)
                      ..+|...|+.++...++.++.+..   +.+..-..+.+.-....-.+.|..++ +.+..+|+...+..++.....   .|
T Consensus       256 ~~~Y~~lg~~~~~~~fL~~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg  332 (389)
T COG2956         256 YECYAQLGKPAEGLNFLRRAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG  332 (389)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence            888888999998888888876333   34444555555554455555665554 446668998888888887543   24


Q ss_pred             CHHHHHHHHHHHHh
Q 009967          424 NVELGEFAARRILA  437 (521)
Q Consensus       424 ~~~~A~~~~~~~~~  437 (521)
                      ...+....++.++.
T Consensus       333 ~~k~sL~~lr~mvg  346 (389)
T COG2956         333 RAKESLDLLRDMVG  346 (389)
T ss_pred             chhhhHHHHHHHHH
Confidence            45666666666665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=1.6e-10  Score=103.60  Aligned_cols=271  Identities=11%  Similarity=0.039  Sum_probs=149.8

Q ss_pred             CCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHH
Q 009967           55 SDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH  131 (521)
Q Consensus        55 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  131 (521)
                      .|+|..|++...+-.+   .....|..-.++--+.|+.+.+-..+.+..+....++...+.+..+.....|+.+.|..-.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            4777777777765332   2233444444555566777777777777766422344444555555566777777777777


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC-----------CchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967          132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-----------NVVSYTTMICGLLKRERFEDALKLFQEM  200 (521)
Q Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~  200 (521)
                      .++.+.+ +-++........+|.+.|++.....++..+.+.           ...+|..+++-....+..+.-...++..
T Consensus       177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            7777655 445666667777777777777777777776651           1234566666666666666666666666


Q ss_pred             CC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhH
Q 009967          201 PH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV  277 (521)
Q Consensus       201 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  277 (521)
                      ++   .++..-.+++.-+...|+.++|.++..+..+++..|+    ...+..+.+.++...-.+..+...+.-+. ++..
T Consensus       256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L  330 (400)
T COG3071         256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLL  330 (400)
T ss_pred             cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhH
Confidence            54   3455556666666677777777777666666554444    11222233334444333333333332221 2244


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      +.+|...|.+.+.|.+|...|+...+  |+..+|+.+..++.+.|+..+|.+..++
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence            44444444444444444444444332  4444444444444444444444444444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=4.3e-11  Score=107.25  Aligned_cols=198  Identities=17%  Similarity=0.077  Sum_probs=161.5

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      ....+..+...+...|++++|.+.+++..+   .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            345667778888889999999999988764   345677888888999999999999999988754 3455677778888


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      +...|++++|...++++............+..+..++...|++++|...+++.. ..| +...+..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            899999999999999987433222345567788899999999999999998743 233 456788888899999999999


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...++++.+..|.++..+..++..+...|+.++|..+.+.+.+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999999998888889999999999999999999998887543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.4e-09  Score=97.82  Aligned_cols=387  Identities=11%  Similarity=0.018  Sum_probs=248.7

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCcccHHHHH-HHHHhcC-ChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTII-GRFAKQH-HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      .+.+|...|+-+.|......+++.-..--+.+| ..+-+.| +-.++.--+.+.... .+.-......++.. .-    .
T Consensus       103 ~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~~i~~ll~l-~v----~  176 (564)
T KOG1174|consen  103 AAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQVIEALLEL-GV----N  176 (564)
T ss_pred             HHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-cchHHHHHHHHHHH-hh----c
Confidence            677777778888888888877754333333333 3333332 222222222222221 11111111111110 11    1


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHc--CCCHHHHHHHhhcC--CC---CCchhHHHHHHHHHcCCCHHHHHHHHh
Q 009967          126 LGKQLHAWATKVGLQSNVFVGSAILDLYIK--LSSIEEATRVFEDT--HN---PNVVSYTTMICGLLKRERFEDALKLFQ  198 (521)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~a~~~~~  198 (521)
                      .+...-..|-...++|...+....+.+++.  .++...|...+--+  ..   .|+.....+...+...|+.++|+..|+
T Consensus       177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe  256 (564)
T KOG1174|consen  177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS  256 (564)
T ss_pred             chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence            111111223333344554444444544433  34444444433222  22   466677888888888899999998888


Q ss_pred             hCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh
Q 009967          199 EMPHRNVVSWNAM---IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV  275 (521)
Q Consensus       199 ~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  275 (521)
                      +...-|+.+...|   .-.+.+.|++++...+...+.... .-+...+-.-.......+++..|..+-+..++.... +.
T Consensus       257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~  334 (564)
T KOG1174|consen  257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NH  334 (564)
T ss_pred             HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cc
Confidence            8776544433332   334567788888888877776532 122223333344445677888888888887776554 55


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH
Q 009967          276 FVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL-WAC  351 (521)
Q Consensus       276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~  351 (521)
                      ..+-.-...+.+.|+.+.|.-.|+....   -+..+|..|+.+|...|.+.+|..+-+...+. ++.+..+...+. ..|
T Consensus       335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~  413 (564)
T KOG1174|consen  335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL  413 (564)
T ss_pred             hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence            5665566788899999999999998764   46789999999999999999999888876553 344566666553 333


Q ss_pred             -HhhccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009967          352 -NHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       352 -~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A  428 (521)
                       ....--++|..++++.....   |+ ....+.+...+...|+.++++.++++ +...||....+.|...+...+.+++|
T Consensus       414 ~~dp~~rEKAKkf~ek~L~~~---P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  414 FPDPRMREKAKKFAEKSLKIN---PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA  490 (564)
T ss_pred             ccCchhHHHHHHHHHhhhccC---CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence             34445689999999876333   44 44677888999999999999999998 55689999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCchHH
Q 009967          429 EFAARRILALDPEDVSSY  446 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~  446 (521)
                      +..|..+++++|++..+.
T Consensus       491 m~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  491 MEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHHHHHhcCccchHHH
Confidence            999999999999776553

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=4.4e-09  Score=92.80  Aligned_cols=410  Identities=10%  Similarity=0.058  Sum_probs=225.1

Q ss_pred             hhhcccCCChhHHHHHhccCCCCC----cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           49 VSCGSESDKFSSVHQVFDEVPDLN----VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        49 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      +.-+....|+..|+.+++--...+    ..+-..+...+.+-|++++|...+..+.+.. .|+...+..+.-.+.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            445556677888888876432211    1222234556677888888888888877654 56666666666555566777


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC-
Q 009967          125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-  203 (521)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-  203 (521)
                      .+|..+-..     .+.++-.-..++..-.+.|+-++-..+-+.+.+.. .---+|.......-.+++|++++.++... 
T Consensus       108 ~eA~~~~~k-----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  108 IEAKSIAEK-----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN  181 (557)
T ss_pred             HHHHHHHhh-----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            777666443     22333334445556667777666666555554421 22233444444556789999999998864 


Q ss_pred             -ChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc--chHHHHHH--------------HHH
Q 009967          204 -NVVSWNA-MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA--ALGMGKSF--------------HAC  265 (521)
Q Consensus       204 -~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~--------------~~~  265 (521)
                       .....|. +.-+|.+..-++-+.++++-.++.-  ||... ..-+.+|..-.  +-..+..-              .+.
T Consensus       182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdSti-A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~  258 (557)
T KOG3785|consen  182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTI-AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY  258 (557)
T ss_pred             hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHH-HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence             4444554 4557788888898888988887752  55433 33334443211  11111111              112


Q ss_pred             HHHcCC------------CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC-------
Q 009967          266 AVKFLG------------KL-----DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR-------  321 (521)
Q Consensus       266 ~~~~~~------------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------  321 (521)
                      +.+.+.            -|     -+..-..|+-.|.+.+++++|..+.+.+...++.-|-.-.-.++..|+       
T Consensus       259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH  338 (557)
T KOG3785|consen  259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH  338 (557)
T ss_pred             HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence            222111            00     112223355567889999999999998876555444333333333332       


Q ss_pred             hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 009967          322 GEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL  400 (521)
Q Consensus       322 ~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  400 (521)
                      ..-|...|+-.-+.+..-|.. .-.++..++.-..+++++..+++.+. ..=...|... -.+..+++..|++.+|+++|
T Consensus       339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn-~N~AQAk~atgny~eaEelf  416 (557)
T KOG3785|consen  339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFN-LNLAQAKLATGNYVEAEELF  416 (557)
T ss_pred             HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhh-hHHHHHHHHhcChHHHHHHH
Confidence            334444444333333222211 12233344445556777777776664 3322223322 24667777777777777777


Q ss_pred             hhCCCCCC---HHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          401 YDLPFDPG---IGFW-KALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       401 ~~~~~~~~---~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      -.+. .|+   ..+| ..|..+|.+.++.+.|-.++-++-.  |. ....+..++.-|.+.+.+--|.+.|+.+....
T Consensus       417 ~~is-~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  417 IRIS-GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD  491 (557)
T ss_pred             hhhc-ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence            6654 222   2233 3344556677777777665543321  22 22334445666777777766666666655443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.38  E-value=2.3e-10  Score=112.04  Aligned_cols=246  Identities=9%  Similarity=0.072  Sum_probs=135.5

Q ss_pred             HHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 009967           94 YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN  173 (521)
Q Consensus        94 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  173 (521)
                      .++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.....+.+...++.++......|+.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            34556666777777777777777777777777776 7777776666667777777777777777666554       566


Q ss_pred             chhHHHHHHHHHcCCCHHH---HHHHHhhCCC---------------------C-ChhHHHHHHHHHHhcCChHHHHHHH
Q 009967          174 VVSYTTMICGLLKRERFED---ALKLFQEMPH---------------------R-NVVSWNAMIGGYSQTGRNEEAVNLF  228 (521)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~---a~~~~~~~~~---------------------~-~~~~~~~l~~~~~~~~~~~~a~~~~  228 (521)
                      ..+|..|..+|.+.||+..   +++.+..+..                     | ....-...+....-.|-++.+++++
T Consensus        83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll  162 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL  162 (1088)
T ss_pred             hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777554   2221111110                     0 0011112222333344444444444


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----
Q 009967          229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER----  304 (521)
Q Consensus       229 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  304 (521)
                      ..+-...   ...++..+++-+.  -+....+++.+......-.|++.++.+++++-.-+|+.+.|..++.+|.+.    
T Consensus       163 ~~~Pvsa---~~~p~~vfLrqnv--~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi  237 (1088)
T KOG4318|consen  163 AKVPVSA---WNAPFQVFLRQNV--VDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI  237 (1088)
T ss_pred             hhCCccc---ccchHHHHHHHhc--cCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence            3332110   0001111122211  123334444444433322566777777777777777777777777777652    


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967          305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG  355 (521)
Q Consensus       305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  355 (521)
                      +.+-|-.|+-+   .++...++.+++-|.+.|+.|++.|+...+-.+...|
T Consensus       238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence            23333333333   5666667777777777777777777766665555533

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.35  E-value=1.8e-09  Score=105.99  Aligned_cols=262  Identities=13%  Similarity=0.052  Sum_probs=163.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      ++..+|.+++.+-...|+.+.|..++.+|.+.|.+.+.+-|-.++-+   .++...+..++.-|.+.|+.|+..|+...+
T Consensus       202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv  278 (1088)
T KOG4318|consen  202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV  278 (1088)
T ss_pred             CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence            67888888888888889999999999999998888777777666655   777888888888888888888887776655


Q ss_pred             HHHHhcCCHH----------------------------------------------------------------------
Q 009967          283 SFYAKCGSME----------------------------------------------------------------------  292 (521)
Q Consensus       283 ~~~~~~g~~~----------------------------------------------------------------------  292 (521)
                      ..+..+|...                                                                      
T Consensus       279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e  358 (1088)
T KOG4318|consen  279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGE  358 (1088)
T ss_pred             HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCc
Confidence            5444422211                                                                      


Q ss_pred             HHHHHHhhcCC-------CChhHHHHHHHHHHHcCC----------------------hHHHHHHHHHHHHCCCCCCHH-
Q 009967          293 DSLLVFDKLTE-------RNIVTWNAVICGYAQNGR----------------------GEEAIEFFERMRINGIRPNGV-  342 (521)
Q Consensus       293 ~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~----------------------~~~A~~~~~~m~~~~~~p~~~-  342 (521)
                      ..+++-..+..       .++..|..++.-|.+.-+                      ..+..++...     ..||.. 
T Consensus       359 ~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~l  433 (1088)
T KOG4318|consen  359 EVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFL  433 (1088)
T ss_pred             hHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHH
Confidence            11111111110       011122222222211100                      0000000000     112211 


Q ss_pred             ---------------------------HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          343 ---------------------------TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       343 ---------------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                                                 .-+.++..|+..-+..+++..-+... ..-+   +..|..|++.+....+.+.
T Consensus       434 r~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~  509 (1088)
T KOG4318|consen  434 RQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEY  509 (1088)
T ss_pred             HHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHH
Confidence                                       11223333333333444443333221 1111   1458889999999999999


Q ss_pred             HHHHHhhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          396 AKEFLYDLPF-----DPGIGFWKALLGGCQIHSNVELGEFAARRILAL---DPEDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       396 A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      |..+.++...     .-|...+..+.....+.+....+..+++++.+.   .|....++..+.+.....|+.+...+..+
T Consensus       510 Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d  589 (1088)
T KOG4318|consen  510 ALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLAD  589 (1088)
T ss_pred             HHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence            9999988751     234446777888888999999999999998873   34445677778888888999999999999


Q ss_pred             HHHhCCCcc
Q 009967          468 EMKEKGMTR  476 (521)
Q Consensus       468 ~m~~~g~~~  476 (521)
                      -++..|+.-
T Consensus       590 ~lvslgl~e  598 (1088)
T KOG4318|consen  590 ILVSLGLSE  598 (1088)
T ss_pred             HHHHhhhhh
Confidence            999888766

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.6e-09  Score=101.47  Aligned_cols=238  Identities=11%  Similarity=0.033  Sum_probs=146.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 009967          213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME  292 (521)
Q Consensus       213 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  292 (521)
                      .++...|+..+-..+=.++.+.. +-.+.+|-++.--|...|...+|++++......... -...|-.+...|.-.|.-+
T Consensus       286 a~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Ehd  363 (611)
T KOG1173|consen  286 ACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHD  363 (611)
T ss_pred             HHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHH
Confidence            34444444444433333443321 222333444433344444444444444444433222 2345666677777777777


Q ss_pred             HHHHHHhhcCC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          293 DSLLVFDKLTE--RNI-VTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       293 ~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                      .|...+..+.+  |.. ..+--+..-|.+.+++..|.+.|.+...  +-| |+...+-+.-.....+.+.+|..+|+...
T Consensus       364 QAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  364 QAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            77777666554  111 1222234456777888888888887775  345 44455555555666788888888887764


Q ss_pred             HhC----CCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          369 LED----PGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       369 ~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      ..-    +-. -...+++.|..+|.+.+++++|+..+++..  .+.+..++.++...|...|+++.|++.|.+++.+.|+
T Consensus       442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            111    111 134468889999999999999999998732  2567778888888899999999999999999999998


Q ss_pred             CchHHHHHHHHHH
Q 009967          442 DVSSYVMLSNALS  454 (521)
Q Consensus       442 ~~~~~~~l~~~~~  454 (521)
                      +..+-..|..+..
T Consensus       522 n~~~~~lL~~aie  534 (611)
T KOG1173|consen  522 NIFISELLKLAIE  534 (611)
T ss_pred             cHHHHHHHHHHHH
Confidence            7666565555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=1.2e-10  Score=101.43  Aligned_cols=230  Identities=11%  Similarity=-0.023  Sum_probs=191.4

Q ss_pred             ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh-HHHHHHHH
Q 009967          239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV-TWNAVICG  315 (521)
Q Consensus       239 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~  315 (521)
                      |..--..+..+|.+.|.+.+|++.++..++...  -+.+|..|.+.|.+..++..|..+|.+-.+  |..+ ....+...
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi  299 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI  299 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence            334445788899999999999999998887754  556777788999999999999999998876  4334 44456777


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                      +-..++.++|.++++...+.. +.+.....++...|.-.++++.|..+|+++. .-|. .++..|+.+.-+|.-.+++|-
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhh
Confidence            888899999999999988853 3456677777788889999999999999997 5554 577889999999999999999


Q ss_pred             HHHHHhhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          396 AKEFLYDLP---FDPG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       396 A~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      ++.-|++..   ..|+  ..+|-.+.......||+..|.+.|+-++..+|++...++.|+-.-.+.|+.++|..+++...
T Consensus       377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            998887732   1454  44888888888899999999999999999999999999999999999999999999999876


Q ss_pred             hCC
Q 009967          471 EKG  473 (521)
Q Consensus       471 ~~g  473 (521)
                      +..
T Consensus       457 s~~  459 (478)
T KOG1129|consen  457 SVM  459 (478)
T ss_pred             hhC
Confidence            543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.32  E-value=4.2e-08  Score=93.38  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=56.6

Q ss_pred             ccHHHHHHHHHHchHhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCC--CCC--HHHHHHHHHHHHhcCCHHHH
Q 009967          355 GLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPF--DPG--IGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       355 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A  428 (521)
                      ..++.|+.+|+++.+.++  |...  .|-.....--+.|-...|+.++++...  ++.  ...|+..|.--+..=-+..-
T Consensus       564 ~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T  641 (835)
T KOG2047|consen  564 TKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT  641 (835)
T ss_pred             CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence            357778888887764332  3221  233333333455777777777776532  222  22455555433333233344


Q ss_pred             HHHHHHHHhcCCCC--chHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          429 EFAARRILALDPED--VSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       429 ~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      ..+|+++++.-|++  ...-...+..-.+.|..+.|+.++.-
T Consensus       642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~  683 (835)
T KOG2047|consen  642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAH  683 (835)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence            55556665554532  12233344445555666666666554

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=1.3e-09  Score=109.97  Aligned_cols=262  Identities=13%  Similarity=0.016  Sum_probs=183.7

Q ss_pred             ChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh---------hcchHHHHHHHHHHHH
Q 009967          204 NVVSWNAMIGGYSQ-----TGRNEEAVNLFIEMLREGLVPNHS-TLPCAIIAAAN---------IAALGMGKSFHACAVK  268 (521)
Q Consensus       204 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~  268 (521)
                      +...|...+.+-..     .+++++|...|++..+.  .|+.. .+..+..++..         .++++.|...++.+.+
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            45555555555322     23467899999998875  36543 34444444332         2447899999999998


Q ss_pred             cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 009967          269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TL  344 (521)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~  344 (521)
                      ..+. +...+..+..++...|++++|...|+++.+  | +...+..+...+...|++++|...+++..+..  |+.. .+
T Consensus       333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~  409 (553)
T PRK12370        333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG  409 (553)
T ss_pred             cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence            8766 778888888999999999999999999875  4 34578888999999999999999999998853  5532 33


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHhc
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIG-FWKALLGGCQIH  422 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~  422 (521)
                      ..++..+...|++++|...++++....+ +.++..+..+..+|...|++++|...++++. ..|+.. ..+.+...+...
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            3344456668999999999998864432 1245567788889999999999999998864 344433 455555566766


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      |  +.|...++++.+..-..+.-.......|.-.|+.+.+... +++.+.|-
T Consensus       489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence            6  4788877777763222222222366667777787777766 88877653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=7.4e-08  Score=90.95  Aligned_cols=174  Identities=15%  Similarity=0.102  Sum_probs=116.5

Q ss_pred             CCHHHHHHHHhhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHH
Q 009967          289 GSMEDSLLVFDKLTERN-IVTWNAVICGYA--QNGRGEEAIEFFERMRINGIRPNG--VTLLGLLWACNHTGLVEKGYSY  363 (521)
Q Consensus       289 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~  363 (521)
                      +..+.+.++-....... ...+.+++....  +...+..+.+++...-+..  |..  ......+......|+++.|.++
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            34455555555555422 233444444332  2235777888888776643  443  3444555667889999999999


Q ss_pred             HH--------HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCCHH-HHHHHHHHHHhcCCHH
Q 009967          364 FS--------QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL--------PFDPGIG-FWKALLGGCQIHSNVE  426 (521)
Q Consensus       364 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~-~~~~l~~~~~~~g~~~  426 (521)
                      +.        .+. ..+  ..+.+..++...+.+.++.+.|..++.+.        ...+... .+..++..-.+.|+.+
T Consensus       399 l~~~~~~~~ss~~-~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~  475 (652)
T KOG2376|consen  399 LSLFLESWKSSIL-EAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE  475 (652)
T ss_pred             HHHHhhhhhhhhh-hhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence            98        442 223  45566778888888888877676666542        2232222 4555555666779999


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       427 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      +|..++++++..+|++..+...++.+|++. +.+.|..+-+.
T Consensus       476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            999999999999999999999999999887 46777766554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.5e-07  Score=85.15  Aligned_cols=279  Identities=12%  Similarity=-0.007  Sum_probs=203.6

Q ss_pred             cCCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhcchHHH
Q 009967          186 KRERFEDALKLFQEMP-----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIAALGMG  259 (521)
Q Consensus       186 ~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a  259 (521)
                      -.++...+...+-.+.     ..|+.....+..++...|+.++|+-.|++.+..+  |+..+ .....-.+...|+++..
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~  285 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD  285 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence            3455555554444333     2478889999999999999999999999987743  54332 22333445678888888


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009967          260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRING  336 (521)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~  336 (521)
                      ..+...+....-. +...|-.-+......++++.|..+-++..+   .++..|-.-...+...|+.++|.-.|+......
T Consensus       286 ~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  286 SALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            8887777654322 222333334445567889999999888876   344455555667888999999999999887642


Q ss_pred             CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHhh-CCCCCCHH-HH
Q 009967          337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV-DLLS-RSGRFKEAKEFLYD-LPFDPGIG-FW  412 (521)
Q Consensus       337 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~-~~~~~~~~-~~  412 (521)
                       +-+-..|..|+++|...|.+.+|.-.-+......+  -+..+...+. ..+. ...--++|.+++++ ++.+|+.. ..
T Consensus       365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV  441 (564)
T KOG1174|consen  365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV  441 (564)
T ss_pred             -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH
Confidence             23567999999999999999998877776653443  3444555442 2222 22345789999987 56678744 77


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      ..+...|...|..+.++.++++.+...| |....+.|+..+...+.+.+|.+.|....+
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            8888889999999999999999999999 888899999999999999999999988654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=2.2e-08  Score=97.26  Aligned_cols=367  Identities=14%  Similarity=0.067  Sum_probs=239.7

Q ss_pred             CCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CC-chh
Q 009967          102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----PN-VVS  176 (521)
Q Consensus       102 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~  176 (521)
                      ..+..|...|..+.-++...|+++.+.+.|++.... .-.....|+.+...|...|.-..|..+++....    |+ ...
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~  395 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV  395 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence            345567778888887888888888888888887653 344566788888888888888888888877654    22 222


Q ss_pred             HHHHHHHHH-cCCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCC-
Q 009967          177 YTTMICGLL-KRERFEDALKLFQEMPH--------RNVVSWNAMIGGYSQT-----------GRNEEAVNLFIEMLREG-  235 (521)
Q Consensus       177 ~~~li~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~-  235 (521)
                      +-..-..|. +.+.+++++++-.+...        -....|..+.-+|...           ....++++.+++..+.+ 
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~  475 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP  475 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            222223333 34556655555444332        1334444444444321           12346777777776643 


Q ss_pred             CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h------
Q 009967          236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-I------  306 (521)
Q Consensus       236 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~------  306 (521)
                      ..|+...|  +.--++..++++.|.....+..+.+...+...|..|.-++.-.+++.+|+.+.+...+  ++ .      
T Consensus       476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence            33333333  2334567788888999888888887777888888888888888888888888876653  11 0      


Q ss_pred             --------------hHHHHHHHHHH-----------------------HcCChHHHHHHHHHHH--------HCC-----
Q 009967          307 --------------VTWNAVICGYA-----------------------QNGRGEEAIEFFERMR--------ING-----  336 (521)
Q Consensus       307 --------------~~~~~li~~~~-----------------------~~~~~~~A~~~~~~m~--------~~~-----  336 (521)
                                    .|...++..+-                       ...+..+|.+....+.        ..|     
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence                          11111111111                       0011111111111110        000     


Q ss_pred             ----CC--CCH------HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-C
Q 009967          337 ----IR--PNG------VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-L  403 (521)
Q Consensus       337 ----~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~  403 (521)
                          +.  |+.      ..|......+...+..++|...+.++....+  .....|......+...|.+++|.+.|.. +
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~--l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP--LSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch--hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence                11  111      1233444556677778888877777643332  4555677778888899999999998876 4


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          404 PFDPG-IGFWKALLGGCQIHSNVELGEF--AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       404 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ...|+ +.+..++...+...|+...|..  ++..+++.+|.++.+|..++..+.+.|+.+.|.+.|....+..
T Consensus       712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            45665 5589999999999999888888  9999999999999999999999999999999999999887654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.30  E-value=8.6e-10  Score=106.10  Aligned_cols=228  Identities=18%  Similarity=0.168  Sum_probs=158.0

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C-C--
Q 009967          243 LPCAIIAAANIAALGMGKSFHACAVKF-----LG-KLDV-FVGNSLISFYAKCGSMEDSLLVFDKLTE-------R-N--  305 (521)
Q Consensus       243 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~--  305 (521)
                      +..+...|...|+++.|...++..++.     |. .|.+ ...+.+...|...+++.+|..+|+++..       + +  
T Consensus       202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~  281 (508)
T KOG1840|consen  202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA  281 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            333444455555555555544444432     11 1111 1223466778888888888888887763       1 2  


Q ss_pred             -hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCC--CCC
Q 009967          306 -IVTWNAVICGYAQNGRGEEAIEFFERMRI-----NGI-RPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDP--GML  375 (521)
Q Consensus       306 -~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~  375 (521)
                       ..+++.|..+|.+.|++++|..++++..+     .|. .|... .++.+...|...+++++|..++++..+...  ..+
T Consensus       282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~  361 (508)
T KOG1840|consen  282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE  361 (508)
T ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence             24777888889999999988888887644     122 23333 455666678899999999988887653322  111


Q ss_pred             C----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 009967          376 K----PEHYACMVDLLSRSGRFKEAKEFLYDLP-------F--DPG-IGFWKALLGGCQIHSNVELGEFAARRILAL---  438 (521)
Q Consensus       376 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  438 (521)
                      +    ..+++.|...|...|++++|.+++++..       .  .+. ...++.+...|.+.+++++|.++|.+...+   
T Consensus       362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~  441 (508)
T KOG1840|consen  362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL  441 (508)
T ss_pred             cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            1    3478999999999999999999998742       1  222 336788888999999999999999988763   


Q ss_pred             -CCC---CchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          439 -DPE---DVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       439 -~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                       +|+   ...+|..|+..|.+.|++++|.++.+...
T Consensus       442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             454   44578899999999999999999988875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.28  E-value=1.9e-09  Score=96.51  Aligned_cols=196  Identities=19%  Similarity=0.225  Sum_probs=107.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967          205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF  284 (521)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  284 (521)
                      ...+..+...+...|++++|...+++.....  |+                                  +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~   74 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY   74 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence            4566677777777777777777777776543  33                                  23334444445


Q ss_pred             HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHH
Q 009967          285 YAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKG  360 (521)
Q Consensus       285 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a  360 (521)
                      +...|++++|.+.+++..+   .+...+..+...+...|++++|...+++.......| ....+..+..++...|++++|
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  154 (234)
T TIGR02521        75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA  154 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence            5555555555555554442   223344455555555566666666666555432111 223444455556666666666


Q ss_pred             HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      ...+++.....+  .+...+..+...+...|++++|...+++..  .+.+...+..++..+...|+.+.|....+.+...
T Consensus       155 ~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       155 EKYLTRALQIDP--QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            666666543332  234455566666666666666666665532  1233444445555566666666666666655544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.28  E-value=1e-11  Score=80.28  Aligned_cols=50  Identities=30%  Similarity=0.513  Sum_probs=44.6

Q ss_pred             CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcC
Q 009967           71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA  120 (521)
Q Consensus        71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  120 (521)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68889999999999999999999999999999999999999999988764

>PRK12370 invasion protein regulator; Provisional

Probab=99.27  E-value=1.4e-09  Score=109.76  Aligned_cols=227  Identities=11%  Similarity=-0.012  Sum_probs=172.1

Q ss_pred             ChhhHHHHHHHHHh-----hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-
Q 009967          239 NHSTLPCAIIAAAN-----IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK---------CGSMEDSLLVFDKLTE-  303 (521)
Q Consensus       239 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-  303 (521)
                      +...|...+.+...     .++.+.|...++++.+..+. +...+..+..+|..         .+++++|...+++..+ 
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            33444455554322     24568899999999987655 45566666665542         3458899999999886 


Q ss_pred             --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHH
Q 009967          304 --RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY  380 (521)
Q Consensus       304 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  380 (521)
                        .+...+..+...+...|++++|...|++..+.+  |+ ...+..+..++...|++++|...++++....+..+  ..+
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--~~~  409 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--AAG  409 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hhH
Confidence              355688888888999999999999999999854  55 55778888889999999999999999985555322  233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYDLP--FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG  457 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  457 (521)
                      ..++..+...|++++|...+++..  ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS  489 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence            344555667899999999998753  1354 4456777788889999999999999998888888888888888888888


Q ss_pred             ChHHHHHHHHHHHhC
Q 009967          458 KWDNVSNIRREMKEK  472 (521)
Q Consensus       458 ~~~~A~~~~~~m~~~  472 (521)
                        ++|...++.+.+.
T Consensus       490 --~~a~~~l~~ll~~  502 (553)
T PRK12370        490 --ERALPTIREFLES  502 (553)
T ss_pred             --HHHHHHHHHHHHH
Confidence              4888888887654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.26  E-value=2.7e-07  Score=88.07  Aligned_cols=175  Identities=11%  Similarity=0.062  Sum_probs=128.6

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHHC-CCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL  152 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  152 (521)
                      ..|-..+..+.++|+...-...|+..... .+......|...+......+-++.+..+|+..++.  .|..  -+.-+..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHH
Confidence            47888888889999999999999887653 44556677888888888889999999999998873  3433  6677888


Q ss_pred             HHcCCCHHHHHHHhhcCCC----------CCchhHHHHHHHHHcCCC---HHHHHHHHhhCCC--CC--hhHHHHHHHHH
Q 009967          153 YIKLSSIEEATRVFEDTHN----------PNVVSYTTMICGLLKRER---FEDALKLFQEMPH--RN--VVSWNAMIGGY  215 (521)
Q Consensus       153 ~~~~g~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~--~~--~~~~~~l~~~~  215 (521)
                      +++.+++++|.+.+.....          .+-..|..+-...++.-+   --....+++.+..  +|  ...|++|+.-|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            8999999999999988875          233456655555554432   2234455555544  23  46799999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 009967          216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA  254 (521)
Q Consensus       216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  254 (521)
                      .+.|.+++|..+|++....-  .+..-|..+..+|+.-.
T Consensus       259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FE  295 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFE  295 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHH
Confidence            99999999999999987743  45555666666665543

>PF13041 PPR_2: PPR repeat family

Probab=99.25  E-value=2.2e-11  Score=78.67  Aligned_cols=50  Identities=34%  Similarity=0.618  Sum_probs=47.2

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967          304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH  353 (521)
Q Consensus       304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  353 (521)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=9.6e-10  Score=95.84  Aligned_cols=229  Identities=13%  Similarity=0.061  Sum_probs=190.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK  287 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  287 (521)
                      -+.+..+|.+.|.+.+|.+.++.-+..  .|-+.||..+-.+|.+......|..++.+-++.-+. ++....-..+.+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence            367889999999999999999988875  477778999999999999999999999888876433 56566667788888


Q ss_pred             cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967          288 CGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF  364 (521)
Q Consensus       288 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  364 (521)
                      .++.++|.++|+...+   .++.....+...|.-.++++-|+.+++++...|+ -+...|+.+.-+|...++++-+..-|
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence            9999999999999876   4666777778888999999999999999999986 46778888888999999999999999


Q ss_pred             HHchHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          365 SQAKLEDPGMLK--PEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       365 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      ++.... -..|+  ..+|-.+.......|++.-|.+.|+-. ..+++ ...++.|.-.-.+.|++++|..++..+....|
T Consensus       382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            888633 22233  457888999999999999999999874 33444 44889998888999999999999999999988


Q ss_pred             C
Q 009967          441 E  441 (521)
Q Consensus       441 ~  441 (521)
                      .
T Consensus       461 ~  461 (478)
T KOG1129|consen  461 D  461 (478)
T ss_pred             c
Confidence            5

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.23  E-value=1.2e-07  Score=92.67  Aligned_cols=408  Identities=11%  Similarity=0.082  Sum_probs=245.8

Q ss_pred             hhhcccCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHc------
Q 009967           49 VSCGSESDKFSSVHQVFDEVPD--LNVV-SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST------  119 (521)
Q Consensus        49 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~------  119 (521)
                      .+.+...|++++|++.++....  .|.. ........+.+.|+.++|..+|..+.+.+  |+...|...+..+.      
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence            4566788999999999977553  3443 45566788899999999999999999876  66665555444443      


Q ss_pred             CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH-HHHHHHhhcCCCCC-chhHHHHHHHHHcCCCHHHHHHHH
Q 009967          120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI-EEATRVFEDTHNPN-VVSYTTMICGLLKRERFEDALKLF  197 (521)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~  197 (521)
                      ...+.+....+|+.+...-  |.......+.-.+.....+ ..+...+..+...+ +.++..+-..|....+.+-..+++
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~  166 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV  166 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence            1235677788888776642  3222222221111111112 12223333333323 334555555555444444444444


Q ss_pred             hhCC------------------CCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcch
Q 009967          198 QEMP------------------HRNV--VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAAL  256 (521)
Q Consensus       198 ~~~~------------------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~  256 (521)
                      ....                  .|+.  .++..+...|-..|++++|++++++...+.  |+ +..|..-.+.+...|++
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence            3321                  1233  345677888999999999999999998864  55 56777888999999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------HH--HHHHHHHHHcCChHH
Q 009967          257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV----------TW--NAVICGYAQNGRGEE  324 (521)
Q Consensus       257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~~~~~~  324 (521)
                      .+|...++.+.+.... |..+-+-.+..+.+.|++++|.+++.....++..          .|  .....+|.+.|++..
T Consensus       245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999988766 7777788888999999999999999988765421          22  334677889999988


Q ss_pred             HHHHHHHHHHC--CC---CCC----------HHHHHHHHHHHHhhc-------cHHHHHHHHHHchHhCCCC-C------
Q 009967          325 AIEFFERMRIN--GI---RPN----------GVTLLGLLWACNHTG-------LVEKGYSYFSQAKLEDPGM-L------  375 (521)
Q Consensus       325 A~~~~~~m~~~--~~---~p~----------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~-~------  375 (521)
                      |++.|....+.  .+   +-|          ..+|..+++..-+..       -...|.++|-.+. ..+.. .      
T Consensus       324 ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~-d~~~~~~~~~~~~  402 (517)
T PF12569_consen  324 ALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH-DKPEAKQGEEQEA  402 (517)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-cCccccccccccc
Confidence            88777665431  11   112          222333332211111       1133455554443 22110 0      


Q ss_pred             -----ChhHHHHHHHHH---HhcCCHHHHHHHH-h----------hC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009967          376 -----KPEHYACMVDLL---SRSGRFKEAKEFL-Y----------DL------PFDPGIGFWKALLGGCQIHSNVELGEF  430 (521)
Q Consensus       376 -----~~~~~~~l~~~~---~~~g~~~~A~~~~-~----------~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~  430 (521)
                           +..--..+..-.   .+...-+++...- +          +.      +..+|+..- .|+   ....=.++|.+
T Consensus       403 ~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge-kL~---~t~dPLe~A~k  478 (517)
T PF12569_consen  403 DNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE-KLL---KTEDPLEEAMK  478 (517)
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH-HHh---cCCcHHHHHHH
Confidence                 000001111100   1111111111110 0          00      012222211 111   22346788999


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      +++-+....|++..+|......|.+.|++--|++.+.+
T Consensus       479 fl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k  516 (517)
T PF12569_consen  479 FLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK  516 (517)
T ss_pred             HHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence            99999999999999999999999999999999988764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.22  E-value=1.7e-09  Score=90.01  Aligned_cols=188  Identities=14%  Similarity=0.079  Sum_probs=85.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV  357 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  357 (521)
                      |.-.|.+.|+...|..-+++..+.|   ..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-+|..|++
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~  119 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRP  119 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCCh
Confidence            3444555555555555555554322   1244444555555555555555555544421 11223444444444455555


Q ss_pred             HHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      ++|...|+++...........+|..+.-+..+.|+++.|.+.|++. ...|+ ..+.-.+.......|++-.|..++++.
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~  199 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERY  199 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence            5555555554422111122234555555555555555555555442 22222 224444444445555555555555555


Q ss_pred             HhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       436 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      ....+.+...+...++.-.+.|+.+.+-++=.++
T Consensus       200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4444444444444444444555554444443333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.21  E-value=3.3e-09  Score=97.88  Aligned_cols=115  Identities=12%  Similarity=0.023  Sum_probs=59.5

Q ss_pred             CChHHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967          219 GRNEEAVNLFIEMLREG-LVPN--HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL  295 (521)
Q Consensus       219 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  295 (521)
                      +..+.++.-+.++.... ..|+  ...|......+...|+.+.|...+..+.+..+. +...|+.+...+...|+++.|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence            44555666666655432 1121  123444444455555555555555555555433 4455555555555555555555


Q ss_pred             HHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009967          296 LVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRI  334 (521)
Q Consensus       296 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~  334 (521)
                      ..|++..+  | +..+|..+..++...|++++|.+.+++..+
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555543  2 233455555555555555555555555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.21  E-value=4.8e-09  Score=101.05  Aligned_cols=232  Identities=13%  Similarity=0.091  Sum_probs=173.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCChhhHH-HHHHHHHhhcchHHHHHHHHHHHHc-----CCC-
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-----G-LVPNHSTLP-CAIIAAANIAALGMGKSFHACAVKF-----LGK-  272 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-  272 (521)
                      .+...+...|...|+++.|+.+++...+.     | ..|...+.. .+...|...+++++|..+|+.+...     |.. 
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45555888899999999999888887664     2 124433333 3667778888999999888888653     222 


Q ss_pred             C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 009967          273 L-DVFVGNSLISFYAKCGSMEDSLLVFDKLTE----------RNI-VTWNAVICGYAQNGRGEEAIEFFERMRIN---GI  337 (521)
Q Consensus       273 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~  337 (521)
                      | -..+++.|..+|.+.|++++|...+++..+          +.+ ..++.++..+...+++++|..++++..+.   -.
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            1 234567778889999999999888887653          222 24667778889999999999999986551   12


Q ss_pred             CCCH----HHHHHHHHHHHhhccHHHHHHHHHHchHhC----CC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 009967          338 RPNG----VTLLGLLWACNHTGLVEKGYSYFSQAKLED----PG-MLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP---  404 (521)
Q Consensus       338 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---  404 (521)
                      .++.    .+++.+...|...|++++|+++++++.+..    +- .+. ...++.|...|.+.+++.+|.++|.+..   
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            2332    478999999999999999999999986443    21 122 3367889999999999999999887632   


Q ss_pred             -----CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          405 -----FDPGIG-FWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       405 -----~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                           ..|+.. +|..|+..|...|+++.|+++.+.+..
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                 245544 899999999999999999999999885

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.20  E-value=1.5e-07  Score=89.94  Aligned_cols=382  Identities=12%  Similarity=0.068  Sum_probs=222.4

Q ss_pred             cCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHH
Q 009967           54 ESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL  130 (521)
Q Consensus        54 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  130 (521)
                      ..|+-++|........+   .+.++|.++.-.+....++++|++.|......+ +.|...+.-+.-.-++.|+++.....
T Consensus        53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t  131 (700)
T KOG1156|consen   53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET  131 (700)
T ss_pred             cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence            45777788777765543   355778777777777788888888888887754 44555555555445667777777777


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-----CCchhHHHH------HHHHHcCCCHHHHHHHHhh
Q 009967          131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-----PNVVSYTTM------ICGLLKRERFEDALKLFQE  199 (521)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~  199 (521)
                      ..+..+.. +.....|...+.++.-.|+...|..+++...+     |+...+...      .....+.|..++|.+.+..
T Consensus       132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~  210 (700)
T KOG1156|consen  132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD  210 (700)
T ss_pred             HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence            77776642 33445666777777777888888877766543     333333322      2345567777777777766


Q ss_pred             CCCC--C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChh
Q 009967          200 MPHR--N-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF  276 (521)
Q Consensus       200 ~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  276 (521)
                      -...  | ...-......+.+.+++++|..+|..+....  ||..-|...+..                           
T Consensus       211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~---------------------------  261 (700)
T KOG1156|consen  211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK---------------------------  261 (700)
T ss_pred             hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH---------------------------
Confidence            6542  2 2223344566777788888888888877754  665554433322                           


Q ss_pred             HHHHHHHHHHhcCCHHHHH-HHHhhcCC--CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967          277 VGNSLISFYAKCGSMEDSL-LVFDKLTE--RNIVTWNAV-ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN  352 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  352 (521)
                             ++.+-.+.-++. .+|....+  |....-.-+ +.......-.+....++..+.+.|+++--..+.++-.-=.
T Consensus       262 -------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~  334 (700)
T KOG1156|consen  262 -------ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE  334 (700)
T ss_pred             -------HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh
Confidence                   222111111222 33333322  000000000 0000001123344455566666666543333333321100


Q ss_pred             hhccHHH-HHHHHHHchHhCC----------CCCChhHH--HHHHHHHHhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHH
Q 009967          353 HTGLVEK-GYSYFSQAKLEDP----------GMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLP-FDPGIG-FWKALLG  417 (521)
Q Consensus       353 ~~~~~~~-a~~~~~~~~~~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~  417 (521)
                      +..-.++ +..+...+. ..+          -+|++..|  -.++..+-+.|+++.|..+++... -.|... .|..=..
T Consensus       335 k~~~le~Lvt~y~~~L~-~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR  413 (700)
T KOG1156|consen  335 KVAFLEKLVTSYQHSLS-GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR  413 (700)
T ss_pred             HhHHHHHHHHHHHhhcc-cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            0001111 111221111 111          13444433  456778888999999999998753 345433 4555556


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      .+...|+.++|...++++.+++..|...-..-+.-..++++.++|.++.....+.|.
T Consensus       414 I~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  414 IFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            688889999999999999998876766655778888899999999999988887775

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.5e-07  Score=88.18  Aligned_cols=387  Identities=15%  Similarity=0.100  Sum_probs=221.6

Q ss_pred             hcccCCChhHHHHHhccC---CCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-hhhHHHHHHHHcCCCChHH
Q 009967           51 CGSESDKFSSVHQVFDEV---PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIPSSTALEDLNL  126 (521)
Q Consensus        51 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~  126 (521)
                      +....|+++.|+..|-..   .++|.+.|+.-..+|++.|++++|++=-.+.++.  .|+ .-.|+....++.-.|++++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence            455789999999999753   3567888999999999999999999877777664  465 4578889989999999999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHh------hcCCC-C------CchhHHHHHHHHH--------
Q 009967          127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------EDTHN-P------NVVSYTTMICGLL--------  185 (521)
Q Consensus       127 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------~~~~~-~------~~~~~~~li~~~~--------  185 (521)
                      |+..|..-++.. +.+...++.+..++...  . .+.+.|      ..+.. |      ....|..++..+-        
T Consensus        89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            999999988864 55677778888777211  0 011111      11110 1      1112222222211        


Q ss_pred             --cCCCHHHHHHHHhhCC----------------CC------------C----------hhHHHHHHHHHHhcCChHHHH
Q 009967          186 --KRERFEDALKLFQEMP----------------HR------------N----------VVSWNAMIGGYSQTGRNEEAV  225 (521)
Q Consensus       186 --~~g~~~~a~~~~~~~~----------------~~------------~----------~~~~~~l~~~~~~~~~~~~a~  225 (521)
                        .-.++..+.-.+....                .|            |          ..-...+.++..+..+++.|+
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence              1111222222221110                00            0          123455666777777788888


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHH-------HHHHHhcCCHHHHHHHH
Q 009967          226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL-------ISFYAKCGSMEDSLLVF  298 (521)
Q Consensus       226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~  298 (521)
                      +-+.......  -+..-++....++...|.+..+...-....+.|.. ...-|+.+       ..+|.+.++++.|+..|
T Consensus       245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            8877777643  33344455556667777776666666655555443 22222222       23444555666666666


Q ss_pred             hhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh
Q 009967          299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP  377 (521)
Q Consensus       299 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  377 (521)
                      .+...+...     -....+....+++........-  +.|... -...-...+.+.|++..|...|.+++...+  .|.
T Consensus       322 ~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P--~Da  392 (539)
T KOG0548|consen  322 QKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP--EDA  392 (539)
T ss_pred             HHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--chh
Confidence            664431110     0111222334444444443332  223332 112224445666777777777777664442  455


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      ..|..-.-+|.+.|.+..|+.-.+.. ...|+ ...|..-..++....+++.|++.|.+.++.+|++..+...+.++...
T Consensus       393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            66777777777777777776655542 22333 33555555556666677777777777777777666665555555544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.17  E-value=6.7e-08  Score=85.17  Aligned_cols=300  Identities=10%  Similarity=0.049  Sum_probs=201.4

Q ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHH---HHHHcCCCHHHHHHHHhhCCCCChhHHHHH---HHHH
Q 009967          142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI---CGLLKRERFEDALKLFQEMPHRNVVSWNAM---IGGY  215 (521)
Q Consensus       142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~  215 (521)
                      ++.-.--+.+.+...|++..|+.-|....+-|+..|.++.   ..|...|+...|+.-|+++.+.-+..+.+-   ...+
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            3334445556666777788888888777776666666554   356677777777777776665333333222   3456


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChh----------------hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH
Q 009967          216 SQTGRNEEAVNLFIEMLREGLVPNHS----------------TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN  279 (521)
Q Consensus       216 ~~~~~~~~a~~~~~~m~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  279 (521)
                      .++|.+++|..-|+..+++.  |+..                .....+..+...|+...+..+...+++..+- +...+.
T Consensus       117 lK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~  193 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQ  193 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHH
Confidence            77888888888888877754  3221                1223344556677888888888888877654 778888


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHH---HHH
Q 009967          280 SLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT----LLG---LLW  349 (521)
Q Consensus       280 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~---ll~  349 (521)
                      .-..+|...|++..|+.-++...+   .+..++..+-..+...|+.+.++...++..+  +.||...    |..   +..
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence            888999999999999877766654   5666777777888888999999988888877  4577642    111   111


Q ss_pred             ------HHHhhccHHHHHHHHHHchHhCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHH
Q 009967          350 ------ACNHTGLVEKGYSYFSQAKLEDPGML--KPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGC  419 (521)
Q Consensus       350 ------~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~  419 (521)
                            .....++|.++.+..+...+..+-.+  ....+..+-.++...|++.+|++...++ ...|+ +.++..-..+|
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~  351 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY  351 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence                  12345667777777776653333211  1224556677777888888888777763 33454 66777777788


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967          420 QIHSNVELGEFAARRILALDPEDVSSY  446 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~  446 (521)
                      .....++.|+.-|+++.+.+++|..+-
T Consensus       352 l~dE~YD~AI~dye~A~e~n~sn~~~r  378 (504)
T KOG0624|consen  352 LGDEMYDDAIHDYEKALELNESNTRAR  378 (504)
T ss_pred             hhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence            888888888888888888888766543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.14  E-value=3.8e-08  Score=90.90  Aligned_cols=90  Identities=16%  Similarity=0.004  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACN  352 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~  352 (521)
                      .|..+...|...|+++.|...|++..+   .+...|+.+...+...|++++|...|++..+.  .|+ ..++..+..++.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            344444445555555555555554443   22344555555555555555555555555442  232 334444444444


Q ss_pred             hhccHHHHHHHHHHch
Q 009967          353 HTGLVEKGYSYFSQAK  368 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~  368 (521)
                      ..|++++|.+.+++..
T Consensus       144 ~~g~~~eA~~~~~~al  159 (296)
T PRK11189        144 YGGRYELAQDDLLAFY  159 (296)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            5555555555555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=3.5e-07  Score=79.22  Aligned_cols=404  Identities=12%  Similarity=0.032  Sum_probs=194.4

Q ss_pred             hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHH-HHHHHcCCCC
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS-VIPSSTALED  123 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~  123 (521)
                      ++..+.+..++++|++++..-.+   .+....+.+...|-+..++..|.+.++.+...  .|...-|.. -...+.+.+.
T Consensus        16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i   93 (459)
T KOG4340|consen   16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI   93 (459)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence            44444555555555555543322   13344455555555555566666666555542  344333322 1223344555


Q ss_pred             hHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHcCCCHHHHHHHhhcCCC-CCchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967          124 LNLGKQLHAWATKVGLQSNVF--VGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDALKLFQEM  200 (521)
Q Consensus       124 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~  200 (521)
                      +..|+++...|...   ++..  ....-.......+|+..+..+.++... .+..+.+.......+.|+++.|.+-|+..
T Consensus        94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen   94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence            55555555554431   1111  111111112234555555555555552 33344444444444555555555555554


Q ss_pred             CC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967          201 PH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL----PCAIIAAANIAALGMGKSFHACAVKFLGK  272 (521)
Q Consensus       201 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  272 (521)
                      .+    .....||..+ +..+.|+++.|++...+..++|++..+..=    .-.+.+ ...|+   -..+....      
T Consensus       171 lqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa------  239 (459)
T KOG4340|consen  171 LQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA------  239 (459)
T ss_pred             HhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHHHHH------
Confidence            43    1223343332 223345555555555555555543221100    000000 00000   00000000      


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967          273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL  347 (521)
Q Consensus       273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  347 (521)
                       -+..+|.-...+.+.|+++.|.+.+-.|..     -|++|...+.-.- ..+++.+..+-+.-+...+ +-...||..+
T Consensus       240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl  316 (459)
T KOG4340|consen  240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL  316 (459)
T ss_pred             -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence             112334444556789999999999999984     4666665554322 2345555555566566543 2345699999


Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhcCCH
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS-RSGRFKEAKEFLYDLPFDPGIGFWKALLGGC-QIHSNV  425 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~  425 (521)
                      +-.||+..-++.|-.++.+-....-.-.++..|+. ++++. ..-..++|.+-++.+...-....-..-+... .+..+-
T Consensus       317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d  395 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD  395 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999998888653211001123334443 33333 3456677766665542100000001111111 111111


Q ss_pred             ----HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          426 ----ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       426 ----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                          ..+++-+++.+++.   -.+....++.|.+..++..+.++|..-.+..-
T Consensus       396 d~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~  445 (459)
T KOG4340|consen  396 DEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN  445 (459)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence                22333444444432   22566778889999999999999998665443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.12  E-value=4.2e-08  Score=81.87  Aligned_cols=200  Identities=16%  Similarity=0.097  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967          207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY  285 (521)
Q Consensus       207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  285 (521)
                      +...|.-.|...|++..|..-+++.++++  |+ ..++..+...|.+.|+.+.|.+.|+.+++..+. +..         
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~Gd---------  104 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGD---------  104 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccc---------
Confidence            45556677788888888888888887754  44 223333444444444444444444444444333 334         


Q ss_pred             HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHH
Q 009967          286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYF  364 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  364 (521)
                                            +.|.....+|..|++++|...|++......-|. ..||..+.-+..+.|+.+.|..+|
T Consensus       105 ----------------------VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063         105 ----------------------VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             ----------------------hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence                                  444444444555555555555554444221111 224444444444555555555555


Q ss_pred             HHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967          365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED  442 (521)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  442 (521)
                      ++.....+  -.+.....+.......|++..|..+++...  ..++..+.-..|..-...||.+.+.+.=.++.+..|.+
T Consensus       163 ~raL~~dp--~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         163 KRALELDP--QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHhCc--CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            55443332  112234444444455555555555554421  23344444444444445555555555555555555543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.11  E-value=1.8e-07  Score=91.52  Aligned_cols=282  Identities=15%  Similarity=0.099  Sum_probs=137.8

Q ss_pred             HHHcCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----h--h
Q 009967          183 GLLKRERFEDALKLFQEMPH--RN-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA----N--I  253 (521)
Q Consensus       183 ~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~--~  253 (521)
                      .+...|++++|++.++.-..  .| ..........+.+.|+.++|..+|..+...+  |+...|...+..+.    .  .
T Consensus        13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence            34455555555555555433  22 2334445566666666666666666666654  55555544444333    1  1


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH-HHHHHHhhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME-DSLLVFDKLTERNI-VTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      .+.+....+++.+.+.-+..+  ....+.-.+....++. .+..++..+....+ .+|+.+-..|......+-..+++..
T Consensus        91 ~~~~~~~~~y~~l~~~yp~s~--~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~  168 (517)
T PF12569_consen   91 EDVEKLLELYDELAEKYPRSD--APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE  168 (517)
T ss_pred             ccHHHHHHHHHHHHHhCcccc--chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence            134444555555544432211  1111111111111121 22222333333222 3444444444433333334444444


Q ss_pred             HHHC----C----------CCCCHH--HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          332 MRIN----G----------IRPNGV--TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       332 m~~~----~----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                      ....    +          -.|...  ++..+...|...|++++|.++.++.++..+  ..+..|..-.+.|.+.|++.+
T Consensus       169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP--t~~ely~~KarilKh~G~~~~  246 (517)
T PF12569_consen  169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP--TLVELYMTKARILKHAGDLKE  246 (517)
T ss_pred             HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHCCCHHH
Confidence            3221    0          122322  334445556667777777777777663332  124566666777777777777


Q ss_pred             HHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC-------chHHHHHHHHHHhcCChHHHHH
Q 009967          396 AKEFLYDLP-FD-PGIGFWKALLGGCQIHSNVELGEFAARRILALD--PED-------VSSYVMLSNALSVAGKWDNVSN  464 (521)
Q Consensus       396 A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~  464 (521)
                      |.+.++... .. -|...-+..+..+.+.|++++|...+....+.+  |..       .......+.+|.+.|++..|+.
T Consensus       247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk  326 (517)
T PF12569_consen  247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK  326 (517)
T ss_pred             HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            777776643 12 233333444455666777777777776665543  211       1122345667777777777766


Q ss_pred             HHHHHH
Q 009967          465 IRREMK  470 (521)
Q Consensus       465 ~~~~m~  470 (521)
                      -|..+.
T Consensus       327 ~~~~v~  332 (517)
T PF12569_consen  327 RFHAVL  332 (517)
T ss_pred             HHHHHH
Confidence            655543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=9.5e-07  Score=82.87  Aligned_cols=352  Identities=12%  Similarity=0.039  Sum_probs=216.0

Q ss_pred             hhhhcccCCChhHHHHHhccCC--CCCc-ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP--DLNV-VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      -..+|++.|++++|.+--.+-.  .|+. ..|+....++.--|++++|+.-|.+-.+.. +.+...+.-+..++......
T Consensus        42 rsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~  120 (539)
T KOG0548|consen   42 RSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAA  120 (539)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHh
Confidence            5778999999999987765544  3554 489999999999999999999999988864 44566677777766111000


Q ss_pred             H---HHHHHHHHHHHhC---CCCcHHHHHHHHHH----------HHcCCCHHHHHHHhhcCC----------------CC
Q 009967          125 N---LGKQLHAWATKVG---LQSNVFVGSAILDL----------YIKLSSIEEATRVFEDTH----------------NP  172 (521)
Q Consensus       125 ~---~a~~~~~~~~~~~---~~~~~~~~~~l~~~----------~~~~g~~~~a~~~~~~~~----------------~~  172 (521)
                      .   .--.++.......   .......|..++..          |.....+..+...+....                .|
T Consensus       121 ~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p  200 (539)
T KOG0548|consen  121 DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEP  200 (539)
T ss_pred             hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCc
Confidence            0   0000111100000   00011112222221          111111222222221110                01


Q ss_pred             ---------C-------------chhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHH
Q 009967          173 ---------N-------------VVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLF  228 (521)
Q Consensus       173 ---------~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~  228 (521)
                               .             ..-.-.+.++..+..+++.|++.+.....  .+..-++....+|...|.+..+...-
T Consensus       201 ~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c  280 (539)
T KOG0548|consen  201 CKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELC  280 (539)
T ss_pred             ccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcch
Confidence                     0             01234567777788888888888887665  34555677788899999988888777


Q ss_pred             HHHHHCCCCCChhhHHH-------HHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967          229 IEMLREGLVPNHSTLPC-------AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL  301 (521)
Q Consensus       229 ~~m~~~~~~p~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  301 (521)
                      ....+.|- -...-|+.       +..++.+.++++.+...+...+..-..|+         ...+....+++.......
T Consensus       281 ~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~  350 (539)
T KOG0548|consen  281 EKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERK  350 (539)
T ss_pred             HHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHH
Confidence            77666542 11222222       23355666788888888888665544432         233444555665555544


Q ss_pred             CC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh
Q 009967          302 TE--RNI-VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE  378 (521)
Q Consensus       302 ~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  378 (521)
                      .-  |.. .-...-...+.+.|++..|...|.++.+.. +-|...|....-+|.+.|.+..|..-.+...+..+  +...
T Consensus       351 a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--~~~k  427 (539)
T KOG0548|consen  351 AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP--NFIK  427 (539)
T ss_pred             HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--hHHH
Confidence            32  322 122223667889999999999999999875 44666889998899999999999998888765543  3344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHH
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWK  413 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~  413 (521)
                      .|..-..++....+++.|++.|++. ...|+..-+.
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            5666667777788999999999884 3455544333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.07  E-value=1.6e-08  Score=91.93  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=112.8

Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hhcc
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----HTGL  356 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~  356 (521)
                      ...++...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+..  .| .+...+..++.    ..+.
T Consensus       108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence            345566788899888888776  566677778889999999999999999998743  34 44455555543    2346


Q ss_pred             HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 009967          357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGCQIHSNV-ELGEFAAR  433 (521)
Q Consensus       357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~-~~A~~~~~  433 (521)
                      +..|..+|+++..+.  .+++.+.+.+..+....|++++|.+++.+ +...|+ +.+...++-.....|+. +.+.+++.
T Consensus       183 ~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            889999999985443  37888888999999999999999998887 433443 44666666666667776 67778888


Q ss_pred             HHHhcCCCCchH
Q 009967          434 RILALDPEDVSS  445 (521)
Q Consensus       434 ~~~~~~p~~~~~  445 (521)
                      ++....|+++.+
T Consensus       261 qL~~~~p~h~~~  272 (290)
T PF04733_consen  261 QLKQSNPNHPLV  272 (290)
T ss_dssp             HCHHHTTTSHHH
T ss_pred             HHHHhCCCChHH
Confidence            888888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=6.3e-07  Score=87.83  Aligned_cols=226  Identities=12%  Similarity=0.039  Sum_probs=135.3

Q ss_pred             hhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHC-C--------CCCChhhHHHHHHHHc
Q 009967           49 VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-N--------IRPSEFTFGSVIPSST  119 (521)
Q Consensus        49 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~~~~~~~ll~~~~  119 (521)
                      ...|..-|+.+.|.+-.+.+.  +-..|..+.+.|.+.++.+-|.-.+-.|... |        -.|+ .+-..+.-...
T Consensus       735 FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi  811 (1416)
T KOG3617|consen  735 FSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI  811 (1416)
T ss_pred             eeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence            456788899999977776665  3478999999999988888777666666421 1        0122 22122222235


Q ss_pred             CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC-chhHHHHHHHHHcCCCHHHHHHHHh
Q 009967          120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN-VVSYTTMICGLLKRERFEDALKLFQ  198 (521)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~  198 (521)
                      ..|-+++|+.+|.+-++.         ..|=..|-..|.|++|.++-+.-.... ..+|......+-..++.+.|++.|+
T Consensus       812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE  882 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE  882 (1416)
T ss_pred             HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            778899999999887763         344456778899999998876544321 2356666666677888999999998


Q ss_pred             hCCCC-----------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc
Q 009967          199 EMPHR-----------------------NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA  255 (521)
Q Consensus       199 ~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  255 (521)
                      +...+                       |...|.-...-.-..|+.+.|+.+|.....         |-.+.+..+-.|+
T Consensus       883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK  953 (1416)
T ss_pred             hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence            86542                       222333333333444555555555544432         2233333344455


Q ss_pred             hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967          256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL  301 (521)
Q Consensus       256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  301 (521)
                      .++|-++-++-   |   |......+.+.|-..|++.+|..+|.+.
T Consensus       954 ~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  954 TDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             chHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            55554443321   1   3344444555565666666666555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1e-08  Score=96.51  Aligned_cols=218  Identities=17%  Similarity=0.122  Sum_probs=172.6

Q ss_pred             HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 009967          251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIE  327 (521)
Q Consensus       251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~  327 (521)
                      .+.|++..|.-.|+..++..+. +...|.-|.......++-..|+..+.+..+   .|....-.|.-.|...|.-..|.+
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            4567777777788888777666 788899999999999999999999998886   345677777788999999999999


Q ss_pred             HHHHHHHCCCC-----C---CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967          328 FFERMRINGIR-----P---NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF  399 (521)
Q Consensus       328 ~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  399 (521)
                      .++.-.....+     +   +...-..  ..+.....+....++|-.+....+..+|+.++..|.-.|.-.|.+++|...
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            99887553210     0   0000000  122233344556666666655777778999999999999999999999999


Q ss_pred             Hhh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          400 LYD-LPFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       400 ~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      |+. +.++|+ ...|+.|...++...+..+|+..|.+++++.|.-..+.+.|+-.|...|.|++|...|-....
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            998 445665 559999999999999999999999999999999999999999999999999999999887654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.03  E-value=1.5e-06  Score=83.27  Aligned_cols=388  Identities=11%  Similarity=0.092  Sum_probs=236.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967           76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK  155 (521)
Q Consensus        76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  155 (521)
                      |..++..| ..+++...++..+.+.+. .+-...|.....-.+...|+.++|........+.. ..+...|..+.-.+..
T Consensus        11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen   11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence            34444433 345677777777777663 33334444433334566788888888777766643 4456677777777777


Q ss_pred             CCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 009967          156 LSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFI  229 (521)
Q Consensus       156 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~  229 (521)
                      ..++++|++.|.....   .|...|.-+.-.-++.|+++..........+   .....|..++.++.-.|++..|..+++
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~  167 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE  167 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999988887764   4555666666666677777777766666554   345678888888888999999999998


Q ss_pred             HHHHCC-CCCChhhHHHHHH------HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009967          230 EMLREG-LVPNHSTLPCAII------AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT  302 (521)
Q Consensus       230 ~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  302 (521)
                      +..+.. ..|+...+.....      .....|..+.|.+.+..-...-+. ....-..-...+.+.+++++|..++..+.
T Consensus       168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll  246 (700)
T KOG1156|consen  168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLL  246 (700)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence            887754 3466665554332      234556666665555443322111 22222344567788899999999999888


Q ss_pred             C--CChhHHHHH-HHHHHH-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHHHHHHHHchHhCCCCCCh
Q 009967          303 E--RNIVTWNAV-ICGYAQ-NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL-VEKGYSYFSQAKLEDPGMLKP  377 (521)
Q Consensus       303 ~--~~~~~~~~l-i~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~  377 (521)
                      .  ||-.-|... ..++.+ .+..+....+|....+.  .|....-..+--......+ .+....++.... +.|+++  
T Consensus       247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~--  321 (700)
T KOG1156|consen  247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPS--  321 (700)
T ss_pred             hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCc--
Confidence            6  444444443 444432 33333333666665542  2222211111111111122 233344444443 444332  


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHh----hCC-------------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLY----DLP-------------FDPGIGFWKA--LLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~----~~~-------------~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                       ++..+...|-.-...+-..++..    .+.             .+|....|..  ++..+-..|+++.|...++.+++.
T Consensus       322 -vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH  400 (700)
T KOG1156|consen  322 -VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH  400 (700)
T ss_pred             -hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence             34444444433222221112211    111             1556555554  555688899999999999999999


Q ss_pred             CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       439 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      .|.-+..|..-++.+..+|..++|...+++..+..
T Consensus       401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD  435 (700)
T ss_pred             CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence            99889999999999999999999999999976554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.01  E-value=7.1e-09  Score=94.25  Aligned_cols=191  Identities=13%  Similarity=0.074  Sum_probs=134.1

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 009967          272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-ER----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG  346 (521)
Q Consensus       272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~  346 (521)
                      .|.......+...+...++-+.+..-++... ++    +..........+...|++++|+++++.-      .+......
T Consensus        63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al  136 (290)
T PF04733_consen   63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL  136 (290)
T ss_dssp             SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred             ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence            4455555555554444455666666665544 32    2222222334566789999999988742      45667777


Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH----HHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD----LLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQ  420 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~  420 (521)
                      .+..+.+.++++.|.+.++.|. +..  .|. +...+..    .+.-.+.+.+|..+|+++.  ..+++.+.+.++.++.
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~-~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l  212 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQ-QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL  212 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHH-CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH-hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            8889999999999999999996 332  333 3333333    3333457999999999974  3577888899999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009967          421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW-DNVSNIRREMKEK  472 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~  472 (521)
                      ..|++++|.+++.++++.+|+++.++..++.+....|+. +.+.+++.+++..
T Consensus       213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998 6678888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=8.1e-07  Score=78.83  Aligned_cols=381  Identities=13%  Similarity=0.094  Sum_probs=243.4

Q ss_pred             HHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967           80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI  159 (521)
Q Consensus        80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  159 (521)
                      +.-+..+.++..|+.+++.-...+-.-...+-..+..++...|++++|...+.-+.... .++...+..|..++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            67778889999999999876643322222222334445679999999999999888754 67777777788888888999


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 009967          160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN  239 (521)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~  239 (521)
                      .+|..+-.+..+ ++..-..|.+.-.+.++-++-..+-+.+.+ ...---++.+.....-.+++|+++|+..+..+  |+
T Consensus       108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e  183 (557)
T KOG3785|consen  108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE  183 (557)
T ss_pred             HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence            999998877743 222333445555667776666665555554 22334455555555667999999999998865  66


Q ss_pred             hhhHHHHHH-HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHH--HHHhhc-------------
Q 009967          240 HSTLPCAII-AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC--GSMEDSL--LVFDKL-------------  301 (521)
Q Consensus       240 ~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~--~~~~~~-------------  301 (521)
                      ....+..+. +|.+..-++.+.++++--++.-+. ++...|..+....+.  |+..+++  .+-+..             
T Consensus       184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH  262 (557)
T KOG3785|consen  184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH  262 (557)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence            666665544 456677778888888877765443 333334333322221  2211111  111111             


Q ss_pred             ------------------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhhccHH
Q 009967          302 ------------------TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-----NHTGLVE  358 (521)
Q Consensus       302 ------------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~  358 (521)
                                        .+.=+..--.++--|.++++..+|..+.+++.-  ..|-......++.+-     .......
T Consensus       263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlK  340 (557)
T KOG3785|consen  263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLK  340 (557)
T ss_pred             CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence                              111112233345557889999999999887542  234444444444332     1222355


Q ss_pred             HHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          359 KGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       359 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      -|.+.|+.+- ..+..- +..--..+..++.-..++++.+.+++.++  +..|...--.+..+....|++.+|+++|-++
T Consensus       341 iAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  341 IAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             HHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence            6777777663 333322 22234455666666678999999988876  2334444445888999999999999999988


Q ss_pred             HhcCCCCchHH-HHHHHHHHhcCChHHHHHHHHHH
Q 009967          436 LALDPEDVSSY-VMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       436 ~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      ...+-.|..+| ..|+++|.+.|+.+-|+.++-++
T Consensus       420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~  454 (557)
T KOG3785|consen  420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT  454 (557)
T ss_pred             cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence            77664455555 45799999999999999887664

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.98  E-value=1.6e-06  Score=83.06  Aligned_cols=197  Identities=11%  Similarity=-0.046  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHH
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNG--VTLLGLLWA  350 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~  350 (521)
                      ....+...+...|++++|.+.+++..+   .+...+..+...+...|++++|..++++.....- .|+.  ..+..+...
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            334455667777777777777777764   3345666677777777888888887777665321 1222  234456666


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HhhC-CCCCC---HHHHHHHHHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-A--CMVDLLSRSGRFKEAKEF---LYDL-PFDPG---IGFWKALLGGCQ  420 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~~~---~~~~~~l~~~~~  420 (521)
                      +...|++++|..+++++....+..+..... +  .++..+...|....+.+.   .... ...|.   .........++.
T Consensus       196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~  275 (355)
T cd05804         196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA  275 (355)
T ss_pred             HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence            777788888888887764222211111111 1  222333333432222222   1111 10011   112224455577


Q ss_pred             hcCCHHHHHHHHHHHHhcCCC---------CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          421 IHSNVELGEFAARRILALDPE---------DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ..|+.+.|..+++.+....-.         ........+.++...|++++|.+.+......+
T Consensus       276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            788888888888887662211         34455566777889999999999999877654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.95  E-value=3e-06  Score=82.31  Aligned_cols=376  Identities=13%  Similarity=0.100  Sum_probs=222.3

Q ss_pred             hhhhcccCCChhHHHHHhcc--CCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           48 SVSCGSESDKFSSVHQVFDE--VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      -++.|.+.|.+.+|.+....  ....|......+..++.+..-+++|-++|+++..    |+     -.+..+.+..-+-
T Consensus       621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~  691 (1636)
T KOG3616|consen  621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFG  691 (1636)
T ss_pred             HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHH
Confidence            45666666666665554321  1123444444555555555555555555555432    11     1122222222233


Q ss_pred             HHHHHHHHHHHhCCCCcHHHH-HHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCC
Q 009967          126 LGKQLHAWATKVGLQSNVFVG-SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN  204 (521)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  204 (521)
                      +|.++-..    .++..+.+. ......+...|+++.|..-|-+..     ....-+.+......+.+|+.+++.+.+.+
T Consensus       692 kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk  762 (1636)
T KOG3616|consen  692 KAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK  762 (1636)
T ss_pred             HHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc
Confidence            33332221    112111111 122233344566666665554332     12223445566778888888888887654


Q ss_pred             hh--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          205 VV--SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       205 ~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      +.  -|..+...|+..|+++.|.++|.+.-         .+.-.|..|.+.|.+..|.++-.+..  |+......|.+-.
T Consensus       763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiaka  831 (1636)
T KOG3616|consen  763 TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKA  831 (1636)
T ss_pred             cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhH
Confidence            43  47778888999999999988886532         35567788889999988887765543  4444566676667


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967          283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS  362 (521)
Q Consensus       283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  362 (521)
                      .-.-+.|++.+|+++|-.+.+|+.     .|+.|-+.|..+..+++..+-...   .-..|-..+..-+...|++..|+.
T Consensus       832 edldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~  903 (1636)
T KOG3616|consen  832 EDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEE  903 (1636)
T ss_pred             HhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHH
Confidence            777888999999999998888875     477888889988888887753221   112355666677788888888887


Q ss_pred             HHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH-----HHH-------------------HHHHH
Q 009967          363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG-----FWK-------------------ALLGG  418 (521)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~-------------------~l~~~  418 (521)
                      -|-+..          -|.+-+.+|...+.|++|-++-+.-. ..+..     .|.                   .-+..
T Consensus       904 ~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~  972 (1636)
T KOG3616|consen  904 HFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF  972 (1636)
T ss_pred             HHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence            775542          15566677777777777777655422 11111     111                   11111


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      .+..+-++-|.++.+-...  ...+.+...++..+...|++++|-+-+-+..+.+
T Consensus       973 a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  973 AADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             hhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            2334455555555443332  1245566778888889999999988777766654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=1.9e-05  Score=75.15  Aligned_cols=408  Identities=13%  Similarity=0.053  Sum_probs=221.6

Q ss_pred             hhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           49 VSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        49 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      +..+...|++++|.+...++..  | +...+..=+-++.+.++|++|+.+.+.-..  ...+...+..=..+..+.+..+
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D   96 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD   96 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence            5566677777777777766542  2 344555556667777777777755443211  0111111111122334677777


Q ss_pred             HHHHHHHHHHHhCCCC-cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHH-HHcCCCHHHHHHHHhhCCC-
Q 009967          126 LGKQLHAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG-LLKRERFEDALKLFQEMPH-  202 (521)
Q Consensus       126 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~-  202 (521)
                      +|...++     |..+ +..+...-...+.+.|++++|..+|+.+.+.+...+...+.+ +...+-.-.+. +.+.... 
T Consensus        97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v  170 (652)
T KOG2376|consen   97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEV  170 (652)
T ss_pred             HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCC
Confidence            7777766     2232 233555556667777888888888877766444444433322 11111111121 2333332 


Q ss_pred             --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCCChh-------hHHHHHHHHHhhcchHHHHHHHHHH
Q 009967          203 --RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-------LVPNHS-------TLPCAIIAAANIAALGMGKSFHACA  266 (521)
Q Consensus       203 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~  266 (521)
                        .+...+......+...|++.+|+++++...+.+       -.-+..       .-..+...+-..|+..+|..++...
T Consensus       171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~  250 (652)
T KOG2376|consen  171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI  250 (652)
T ss_pred             CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence              233334444566777889999999888873321       111111       1223445567788888888888888


Q ss_pred             HHcCCCCChh----HHHHHHHHHHhcCCH-H-HHHHHHhhcCCCCh--------------h-HHHHHHHHHHHcCChHHH
Q 009967          267 VKFLGKLDVF----VGNSLISFYAKCGSM-E-DSLLVFDKLTERNI--------------V-TWNAVICGYAQNGRGEEA  325 (521)
Q Consensus       267 ~~~~~~~~~~----~~~~l~~~~~~~g~~-~-~A~~~~~~~~~~~~--------------~-~~~~li~~~~~~~~~~~A  325 (521)
                      ++.... |..    ..|.|+.+ ....++ + .++..++.......              . .-+.++..|.  +.-+.+
T Consensus       251 i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~  326 (652)
T KOG2376|consen  251 IKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQV  326 (652)
T ss_pred             HHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence            887654 322    12222221 111111 1 22223332221111              1 1122222222  223333


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHH--hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHh--
Q 009967          326 IEFFERMRINGIRPNGVTLLGLLWACN--HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY--  401 (521)
Q Consensus       326 ~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--  401 (521)
                      .++-...  .+..|.. .+..++..+.  +......+..++......++. -...+....+......|+++.|.+++.  
T Consensus       327 r~~~a~l--p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~gn~~~A~~il~~~  402 (652)
T KOG2376|consen  327 RELSASL--PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQGNPEVALEILSLF  402 (652)
T ss_pred             HHHHHhC--CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3333321  1223433 3444444432  222467788888776433321 124456677888899999999999998  


Q ss_pred             ------hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C---CCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          402 ------DLP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILAL----D---PEDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       402 ------~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                            .+. ..-.+.+...+...+.+.++.+.|..++.+++.-    .   +....++..++..-.+.|+-++|...++
T Consensus       403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le  482 (652)
T KOG2376|consen  403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE  482 (652)
T ss_pred             hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence                  332 2233445555666678888888899998888762    2   2233456667777778899999999999


Q ss_pred             HHHhC
Q 009967          468 EMKEK  472 (521)
Q Consensus       468 ~m~~~  472 (521)
                      ++.+.
T Consensus       483 el~k~  487 (652)
T KOG2376|consen  483 ELVKF  487 (652)
T ss_pred             HHHHh
Confidence            99874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.94  E-value=1.7e-06  Score=82.90  Aligned_cols=189  Identities=13%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C---Ch--hHHHHHHHHHHHcCC
Q 009967          249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R---NI--VTWNAVICGYAQNGR  321 (521)
Q Consensus       249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~li~~~~~~~~  321 (521)
                      .+...|+++.|...++...+..+. +...+..+..++...|++++|...+++..+  |   +.  ..|..+...+...|+
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~  201 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD  201 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence            334444444444444444444322 455566666777777777777777776654  1   11  234456677777788


Q ss_pred             hHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhhccHHHHHHH---HHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967          322 GEEAIEFFERMRINGI-RPNGVTL-L--GLLWACNHTGLVEKGYSY---FSQAKLEDPGMLKPEHYACMVDLLSRSGRFK  394 (521)
Q Consensus       322 ~~~A~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  394 (521)
                      +++|..++++...... .+..... .  .++..+...|..+.+.+.   ......................++...|+.+
T Consensus       202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence            8888888877654321 1111111 1  222222233322222221   1111101010111122234566677888888


Q ss_pred             HHHHHHhhCCC--CC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          395 EAKEFLYDLPF--DP---G------IGFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       395 ~A~~~~~~~~~--~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      .|...++.+..  ..   .      +...-....++...|+.++|.+.+.+++..
T Consensus       282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888876531  11   1      111222233467889999999999888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=4.5e-06  Score=81.73  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL  387 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (521)
                      .|......+.+.++.++|...+.+..... +-....|......+...|.+++|.+.|.....-.|  .++.+..++..++
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP--~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP--DHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC--CCcHHHHHHHHHH
Confidence            35556677788899999998888877642 23444666666778889999999999988764444  3456789999999


Q ss_pred             HhcCCHHHHHH--HHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          388 SRSGRFKEAKE--FLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       388 ~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                      .+.|+..-|..  ++..+ ..+| +...|..+...+.+.|+.+.|.+.|.-+.++.+.+|.
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99998777776  76664 4455 5779999999999999999999999999998876653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.93  E-value=3.7e-06  Score=81.67  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=93.3

Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 009967          246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA  325 (521)
Q Consensus       246 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  325 (521)
                      .+.+......+.+|..+++.+...+..  ..-|..+.+.|...|+++.|+++|-+.-     .++-.|..|.+.|+|+.|
T Consensus       738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence            344455556666666666666554332  2334556666777777777777766542     344556667777777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967          326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF  405 (521)
Q Consensus       326 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  405 (521)
                      .++-.+..  |.......|..-..-....|++.+|+++|-.+    + .|+.     -+.+|-+.|..++.+++.++---
T Consensus       811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h~  878 (1636)
T KOG3616|consen  811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHG  878 (1636)
T ss_pred             HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence            76655433  21122233333333355666666666665433    1 1332     35566667777777666665421


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          406 DPGIGFWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      .--..+...+..-+-..|+.+.|...|-++
T Consensus       879 d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            111224444555556666666666655544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.91  E-value=4.4e-06  Score=90.75  Aligned_cols=323  Identities=10%  Similarity=-0.020  Sum_probs=210.0

Q ss_pred             HHHHcCCCHHHHHHHhhcCCC----CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC----C----C----hhHHHHHHHH
Q 009967          151 DLYIKLSSIEEATRVFEDTHN----PNVVSYTTMICGLLKRERFEDALKLFQEMPH----R----N----VVSWNAMIGG  214 (521)
Q Consensus       151 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~----~----~~~~~~l~~~  214 (521)
                      ......|+++.+..+++.+..    .+..........+...|+++++...+.....    .    +    ......+...
T Consensus       382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            344557788888888777642    2233333445556678999998888876432    1    1    1122233455


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-----CChhHHHHHHHHH
Q 009967          215 YSQTGRNEEAVNLFIEMLREGLVPNH----STLPCAIIAAANIAALGMGKSFHACAVKFLGK-----LDVFVGNSLISFY  285 (521)
Q Consensus       215 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~  285 (521)
                      +...|++++|...+++....-...+.    .....+...+...|+++.|...+.........     ........+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            67899999999999988763111121    23344555667899999999998887653221     1123455667778


Q ss_pred             HhcCCHHHHHHHHhhcCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 009967          286 AKCGSMEDSLLVFDKLTE-------RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN--GIRPN--GVTLLGLLWA  350 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~  350 (521)
                      ...|+++.|...+++..+       ++    ...+..+...+...|++++|...+.+....  ...+.  ...+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            899999999998887653       11    123445566677789999999999887552  11122  2244445566


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHhhCCCC--CCHH----HHHHHHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-----ACMVDLLSRSGRFKEAKEFLYDLPFD--PGIG----FWKALLGGC  419 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~  419 (521)
                      ....|+.+.|...++.+............+     ...+..+...|+.+.|.+.+......  ....    .+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            788999999999988874321111111111     11224455689999999998775421  1111    134566678


Q ss_pred             HhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          420 QIHSNVELGEFAARRILALD------PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ...|++++|...++++....      +....++..++.++.+.|+.++|...+.+..+..
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            88999999999999988742      1134567788999999999999999999987654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.90  E-value=2.5e-07  Score=95.61  Aligned_cols=233  Identities=13%  Similarity=0.106  Sum_probs=186.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--------RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL  345 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~  345 (521)
                      +...|-..|..+.+.++.++|+++++++..        .-...|.+++..-..-|.-+...++|+++.+.-  -....|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            556677888889999999999999998874        123478888888888888899999999998742  2234678


Q ss_pred             HHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCC---CHHHHHHHHHHHHh
Q 009967          346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDP---GIGFWKALLGGCQI  421 (521)
Q Consensus       346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~---~~~~~~~l~~~~~~  421 (521)
                      .|...|.+.+.+++|.++++.|.++.+  -...+|..++..+.+.++-+.|..++.+ +..-|   ........+..-.+
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            888999999999999999999998887  5667899999999999999999999987 33333   34455566666788


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCC
Q 009967          422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM  501 (521)
Q Consensus       422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (521)
                      .||.+++..+|+..+...|.....|+.+++.-.+.|+.+.++.+|++....++++...-.+      ...|..-.++|.+
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff------fKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF------FKKWLEYEKSHGD 1686 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH------HHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999998876443111      1122233367777


Q ss_pred             cHHHHHHHHHHHHHH
Q 009967          502 NDEIYAVLRSCTEQI  516 (521)
Q Consensus       502 ~~~i~~~l~~~~~~~  516 (521)
                      .+.+..+-++-.+-+
T Consensus      1687 e~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKEYV 1701 (1710)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            777777766665544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=1.1e-06  Score=76.20  Aligned_cols=304  Identities=12%  Similarity=0.079  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHHH-HHHHHHhc
Q 009967          145 VGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNA-MIGGYSQT  218 (521)
Q Consensus       145 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~  218 (521)
                      -+++++..+.+..+++.|++++..-.+  | +......+..+|....++..|-..++++..  |...-|.. -...+.+.
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence            345555556677777777777765544  2 344556666777777777777777777665  33333322 23455566


Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 009967          219 GRNEEAVNLFIEMLREGLVPNHSTLPCAII--AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL  296 (521)
Q Consensus       219 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  296 (521)
                      +.+..|+++...|...   |+...-..-+.  ...+.+++-.+..+.++....|   +..+.+...-...+.|+++.|.+
T Consensus        92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq  165 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence            6777777776666442   21111111111  1123344444544444433221   33333333334445566666666


Q ss_pred             HHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhhccHHHHHHHHHHch
Q 009967          297 VFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT----LLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       297 ~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                      -|+...+    .....||.-+ +..+.|+++.|+++..++.++|++.....    ..-.+.+ ...|+.   ..+.... 
T Consensus       166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~Sa-  239 (459)
T KOG4340|consen  166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQSA-  239 (459)
T ss_pred             HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHHH-
Confidence            6655554    2223444333 23344555666666666555554321110    0000000 000000   0000000 


Q ss_pred             HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                             -...+|.-...+.+.|+++.|.+.+.+|+    .+.|+.+...+.-.- ..+++.+..+-+.-+++++|-.+.
T Consensus       240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E  311 (459)
T KOG4340|consen  240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE  311 (459)
T ss_pred             -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence                   00123333344567888888888888886    234556655554332 235666677777777778887778


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHH
Q 009967          445 SYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       445 ~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      ++..+.-.|++..-++-|..++-+
T Consensus       312 TFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  312 TFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHHHHhhhHHHhHHHHHHhh
Confidence            888888888888888888777765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.85  E-value=3.9e-07  Score=81.65  Aligned_cols=180  Identities=11%  Similarity=-0.024  Sum_probs=123.7

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-I---VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV----T  343 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~  343 (521)
                      ....+..+...+.+.|+++.|...|+++.+  |+ .   .++..+..++...|++++|...++++.+..  |+..    +
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence            455667777788888888888888887764  32 1   356777788888888888888888887643  3221    3


Q ss_pred             HHHHHHHHHhh--------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 009967          344 LLGLLWACNHT--------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL  415 (521)
Q Consensus       344 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l  415 (521)
                      +..+..++...        |+.+.|.+.++.+....+-.  ...+..+.....    .....           ......+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~----~~~~~-----------~~~~~~~  172 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDY----LRNRL-----------AGKELYV  172 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence            44455555543        67888888888887554322  222222211111    00000           0011245


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          416 LGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...+...|++++|+..++++++..|++   +..+..++.++...|++++|..+++.+...
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            566889999999999999999987764   478999999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=4.7e-05  Score=76.89  Aligned_cols=275  Identities=14%  Similarity=0.117  Sum_probs=165.7

Q ss_pred             CCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 009967          157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL  236 (521)
Q Consensus       157 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~  236 (521)
                      +.+++|.+.-++..+  +..|..+..+-.+.|.+.+|++-|-+..  |+..|..++....+.|.+++-.+++.-.++..-
T Consensus      1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred             hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence            444444444444433  3456777777777777777777665544  455667777777777777777777665555443


Q ss_pred             CCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 009967          237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY  316 (521)
Q Consensus       237 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  316 (521)
                      .|..  =+.++-+|++.+++.+.+.+..       -|+......+.+-|...|.++.|.-+|..     +..|..|...+
T Consensus      1165 E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTL 1230 (1666)
T ss_pred             Cccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHH
Confidence            3332  2456667777776655544432       44555566666666666777776666653     45677777788


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC--CCChhHHHHHHHHHHhcCCHH
Q 009967          317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG--MLKPEHYACMVDLLSRSGRFK  394 (521)
Q Consensus       317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~  394 (521)
                      ...|++..|...-++.      .+..||..+-.+|...+.+..|.        -+|+  .....-...|+..|...|.++
T Consensus      1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred             HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHH
Confidence            8888888877655432      35567887777787766554331        2332  234445677888888888888


Q ss_pred             HHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-C------CCchHHHHHHHHHHhcCChHHHHH
Q 009967          395 EAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL-D-P------EDVSSYVMLSNALSVAGKWDNVSN  464 (521)
Q Consensus       395 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p------~~~~~~~~l~~~~~~~g~~~~A~~  464 (521)
                      +.+.+++.. .. +.....|+.|...|.+- ++++.++.++-.... + |      +....|..+.-.|.+-..||.|.-
T Consensus      1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            888888763 22 33344566666555543 444444444443331 1 1      134456666666666666665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=8.9e-05  Score=73.37  Aligned_cols=203  Identities=10%  Similarity=0.001  Sum_probs=131.7

Q ss_pred             hhhccccCCCCccchHHHHHHHh--hcCCCchh-hhhhcccCCChhHHHHHhccCCC-------------CCcccHHHHH
Q 009967           17 LSKLHSLAPNYLIETQKASVQKL--ETPAIRTD-SVSCGSESDKFSSVHQVFDEVPD-------------LNVVSATTII   80 (521)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~   80 (521)
                      .++++...+-+-++++.++..+.  ++. .-++ ++++|.+..+.+-|.-.+..|..             ++ ..-..+.
T Consensus       730 kaml~FSfyvtiG~MD~AfksI~~IkS~-~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA  807 (1416)
T KOG3617|consen  730 KAMLDFSFYVTIGSMDAAFKSIQFIKSD-SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA  807 (1416)
T ss_pred             HhhhceeEEEEeccHHHHHHHHHHHhhh-HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence            34455444444555555554443  222 2333 99999999999888888776642             22 2222333


Q ss_pred             HHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHH
Q 009967           81 GRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE  160 (521)
Q Consensus        81 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  160 (521)
                      -.-..-|..++|..+|++.++.         ..+=+.|-..|.+++|.++-+.--+.   .=..||..-..-+-..+|++
T Consensus       808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHH
Confidence            3345668899999999998763         33444566788999998876643321   12345555566666778888


Q ss_pred             HHHHHhhcCCC-----------------------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---------------
Q 009967          161 EATRVFEDTHN-----------------------PNVVSYTTMICGLLKRERFEDALKLFQEMPH---------------  202 (521)
Q Consensus       161 ~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------  202 (521)
                      .|++.|++...                       .|...|.-....+-..|+.+.|+.+|....+               
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~  955 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD  955 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence            88888877643                       2334444455555667888888888876542               


Q ss_pred             ---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967          203 ---------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR  233 (521)
Q Consensus       203 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  233 (521)
                               .|..+...+.+.|-..|++.+|..+|.+.+.
T Consensus       956 kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  956 KAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                     3556777888888888888888888877643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.81  E-value=6e-07  Score=77.14  Aligned_cols=148  Identities=11%  Similarity=0.133  Sum_probs=110.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC
Q 009967          313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR  392 (521)
Q Consensus       313 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  392 (521)
                      +..|...|+++.+....+.+..    |.        ..+...++.+++...++......+  .+...|..+...|...|+
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCC
Confidence            3456777777776444332221    11        012235666777777777765555  677789999999999999


Q ss_pred             HHHHHHHHhhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          393 FKEAKEFLYDL-PFDP-GIGFWKALLGGC-QIHSN--VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       393 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      +++|...+++. ...| +...+..+..++ ...|+  .++|.++++++++.+|+++.++..++..+.+.|++++|+..|+
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999874 2344 566777777764 66676  5999999999999999999999999999999999999999999


Q ss_pred             HHHhCCC
Q 009967          468 EMKEKGM  474 (521)
Q Consensus       468 ~m~~~g~  474 (521)
                      ++.+...
T Consensus       169 ~aL~l~~  175 (198)
T PRK10370        169 KVLDLNS  175 (198)
T ss_pred             HHHhhCC
Confidence            9887643

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=3.4e-05  Score=77.83  Aligned_cols=238  Identities=14%  Similarity=0.039  Sum_probs=181.5

Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHH
Q 009967          188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV  267 (521)
Q Consensus       188 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  267 (521)
                      +.++.|.++-++..  .+..|..+..+-.+.|...+|++-|-+.      -|+..|..++..+.+.|.++...+++..+.
T Consensus      1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred             hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44455555554444  4567999999999999999998877443      467789999999999999999999999998


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967          268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL  347 (521)
Q Consensus       268 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  347 (521)
                      +...+|.+.  ..|+-+|++.++..+.++++   ..||.........-|...|.++.|.-+|..         ..-|..|
T Consensus      1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKL 1226 (1666)
T ss_pred             HhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHH
Confidence            887776554  56888999999988776654   357888888888889999999888877763         3446677


Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL  427 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  427 (521)
                      ...+...|+++.|...-+++       .+..+|..+..+|...+.+.-|.-.  -+.+--...-...|+.-|...|-+++
T Consensus      1227 a~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred             HHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHH
Confidence            77788889998888877665       3667898888888877766544321  11112233456678889999999999


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          428 GEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      -+.+++..+.+...+...|..|+-.|.+-
T Consensus      1298 lIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             HHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence            99999999998888888888888777764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.78  E-value=3.1e-05  Score=68.79  Aligned_cols=307  Identities=10%  Similarity=-0.011  Sum_probs=170.9

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHH-HHHHHHH
Q 009967           75 SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG-SAILDLY  153 (521)
Q Consensus        75 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~  153 (521)
                      ----+...+..+|++..|+.-|....+.+ +.+-.++-.-...|...|+..-|+.=+...++  .+||...- -.-...+
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence            33456667777788888888888776532 11222333333457777888888877777776  46765432 2233466


Q ss_pred             HcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          154 IKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM  231 (521)
Q Consensus       154 ~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m  231 (521)
                      .++|.++.|..-|+.+.+  |+..+-.   .++.+.-..++            .......+..+...|+...|+.....+
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e------------~~~l~~ql~s~~~~GD~~~ai~~i~~l  181 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQE------------HWVLVQQLKSASGSGDCQNAIEMITHL  181 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHH------------HHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence            788888888888877765  2211100   00000000000            011112233344445555555555555


Q ss_pred             HHCCCCC-ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--h-
Q 009967          232 LREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI--V-  307 (521)
Q Consensus       232 ~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-  307 (521)
                      ++.  .| |...+..-..+|...|++..|..=+..+.+.... +...+.-+...+...|+.+.++...++..+-|+  . 
T Consensus       182 lEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  182 LEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             Hhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence            442  23 2233333444555555555554444444443333 333444455555566666666665555554222  1 


Q ss_pred             ---HHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967          308 ---TWNAV---------ICGYAQNGRGEEAIEFFERMRINGIRPNGV---TLLGLLWACNHTGLVEKGYSYFSQAKLEDP  372 (521)
Q Consensus       308 ---~~~~l---------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  372 (521)
                         .|..+         +......++|.++.+..+...+........   .+..+-.++...+++.+|++.-.++....+
T Consensus       259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~  338 (504)
T KOG0624|consen  259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP  338 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence               11111         122345678888888888877654221222   344455566778899999999888863332


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967          373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP  404 (521)
Q Consensus       373 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  404 (521)
                        .|..++.--..+|.-...++.|+.-|+...
T Consensus       339 --~dv~~l~dRAeA~l~dE~YD~AI~dye~A~  368 (504)
T KOG0624|consen  339 --DDVQVLCDRAEAYLGDEMYDDAIHDYEKAL  368 (504)
T ss_pred             --hHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              347788888899999999999999998854

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=4.2e-07  Score=88.20  Aligned_cols=218  Identities=8%  Similarity=-0.027  Sum_probs=165.1

Q ss_pred             CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHH
Q 009967          238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICG  315 (521)
Q Consensus       238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~  315 (521)
                      |-...-..+...+.+.|-...|..+++.         ...+...+.+|...|+..+|..+..+..+  |++..|..+.+.
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV  466 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence            3333344556667777777888877774         45567788888999988888888777664  677788888777


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                      .....-+++|.++.+.....       +-..+.......++++++.+.|+.-.+.++  ....+|-.+.-+..+.+++..
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHH
Confidence            77777788888887764321       112222223346888999998888765555  345568888888889999999


Q ss_pred             HHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          396 AKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       396 A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      |.+.|.. ....||.. .|+.+..+|.+.|+-.+|...++++...+..+..+|..........|.+++|.+.+.++.+..
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9988876 44566644 899999999999999999999999999888888999999999999999999999999886543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.76  E-value=0.00021  Score=67.67  Aligned_cols=125  Identities=10%  Similarity=0.013  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGC  419 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~  419 (521)
                      +|..++....+..-+..|+.+|.++. +.+..+ ++.++++++..|+ .++..-|.++|+- ++.-+| +......+..+
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR-~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL  445 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAR-EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL  445 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHh-hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            34444444444445555555555554 222222 4444455554443 3445555555543 221222 22333344444


Q ss_pred             HhcCCHHHHHHHHHHHHhc--CCC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          420 QIHSNVELGEFAARRILAL--DPE-DVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      ...++-..+..+|++.+..  .|+ ...+|..++..-+.-|+...++++-+++
T Consensus       446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~  498 (656)
T KOG1914|consen  446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR  498 (656)
T ss_pred             HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            4555555555555555553  221 3345555555555555555555554444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.71  E-value=2.2e-05  Score=79.08  Aligned_cols=417  Identities=14%  Similarity=0.070  Sum_probs=234.8

Q ss_pred             hhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh--HHHHHHHHcCCC
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT--FGSVIPSSTALE  122 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~  122 (521)
                      |-+.|....+...|.+.|++.-   ..+...+....+.|++..+++.|..+.-..-+.. +.-...  |...--.+...+
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~  576 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAH  576 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCcc
Confidence            5556666667778888887643   4466778888888888888888888733222211 111112  222222356777


Q ss_pred             ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchh-HHHH--HHHHHcCCCHHHHHHHHhh
Q 009967          123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS-YTTM--ICGLLKRERFEDALKLFQE  199 (521)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~a~~~~~~  199 (521)
                      +...++.-|+...+.. +.|...|..++.+|.++|.+..|.++|.+...-++.. |...  ....+..|.+++|...+..
T Consensus       577 n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~  655 (1238)
T KOG1127|consen  577 NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL  655 (1238)
T ss_pred             chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            8888888888877754 5577888889999999999999999998776633322 2222  2234556788888877776


Q ss_pred             CCC----------CChhHHHHHHHHHHhcCChHH-------HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchH--HH-
Q 009967          200 MPH----------RNVVSWNAMIGGYSQTGRNEE-------AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG--MG-  259 (521)
Q Consensus       200 ~~~----------~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a-  259 (521)
                      +..          .-..++-.+...+...|-..+       +++.|.-...+....+...+..+-.+|.-.-..+  .. 
T Consensus       656 ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn  735 (1238)
T KOG1127|consen  656 IIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN  735 (1238)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH
Confidence            543          112233333333332332222       2222222222211111111211111111100000  00 


Q ss_pred             ---HHH-HHHHHHcCC--------------------CCChhHHHHHHHHHHh----c----CCHHHHHHHHhhcCC---C
Q 009967          260 ---KSF-HACAVKFLG--------------------KLDVFVGNSLISFYAK----C----GSMEDSLLVFDKLTE---R  304 (521)
Q Consensus       260 ---~~~-~~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~---~  304 (521)
                         ..+ +.+....+.                    ..+...|..++..|.+    .    .+...|...+....+   .
T Consensus       736 ~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an  815 (1238)
T KOG1127|consen  736 MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN  815 (1238)
T ss_pred             HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc
Confidence               000 001111111                    1123333334333322    1    233466677766654   5


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967          305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV  384 (521)
Q Consensus       305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  384 (521)
                      +..+|+.|.-. ...|++.-|...|-.-.... +-...+|..+.-.+....+++.|...|...+.-.+  .+...|....
T Consensus       816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP--~nl~~WlG~A  891 (1238)
T KOG1127|consen  816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP--LNLVQWLGEA  891 (1238)
T ss_pred             cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCc--hhhHHHHHHH
Confidence            66677776554 55566766666665544432 23445777777778888899999999998763333  3444566656


Q ss_pred             HHHHhcCCHHHHHHHHhh-----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH----------HHHHhcCCCCchHHH
Q 009967          385 DLLSRSGRFKEAKEFLYD-----LP--FDPGIGFWKALLGGCQIHSNVELGEFAA----------RRILALDPEDVSSYV  447 (521)
Q Consensus       385 ~~~~~~g~~~~A~~~~~~-----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~----------~~~~~~~p~~~~~~~  447 (521)
                      ......|+.-++..+|..     +.  .-|+...|-........+|+.++-+...          ++.....|+...+|.
T Consensus       892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~  971 (1238)
T KOG1127|consen  892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA  971 (1238)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence            666678888888888765     11  1344445544444556666666554444          444456788888999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHH
Q 009967          448 MLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       448 ~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      ..+...-+.+.+.+|.+...+..
T Consensus       972 ~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  972 ANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888888777653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.69  E-value=6e-07  Score=72.93  Aligned_cols=108  Identities=12%  Similarity=-0.029  Sum_probs=67.7

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH  422 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~  422 (521)
                      ..+..++...|++++|...|+.+....+  .+...|..+..++.+.|++++|...|++.. . +.+...+..+..++...
T Consensus        28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         28 YASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            3445556666777777777766653333  345566666666667777777777666632 2 33455666666666777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      |++++|+..|+++++..|+++..+...+.++.
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777777766666655543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.68  E-value=0.00013  Score=79.30  Aligned_cols=323  Identities=12%  Similarity=-0.008  Sum_probs=203.3

Q ss_pred             HHHHHcCCCHHHHHHHhhcCCCCCch--hHHHHHHHHHcCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHH
Q 009967          150 LDLYIKLSSIEEATRVFEDTHNPNVV--SYTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEE  223 (521)
Q Consensus       150 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~  223 (521)
                      ...+...|++.+|.............  ............|+++.+..+++.+..    .+..........+...|++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~  427 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE  427 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence            34455566666666555554432111  111222345567888888888887742    233334455566678899999


Q ss_pred             HHHHHHHHHHCC--C----CCCh--hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCH
Q 009967          224 AVNLFIEMLREG--L----VPNH--STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV----FVGNSLISFYAKCGSM  291 (521)
Q Consensus       224 a~~~~~~m~~~~--~----~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~  291 (521)
                      +...+......-  .    .+..  .........+...|+++.+...++.........+.    ...+.+...+...|++
T Consensus       428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~  507 (903)
T PRK04841        428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL  507 (903)
T ss_pred             HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence            999998875531  1    1111  11122234456789999999999988764222222    2345566777889999


Q ss_pred             HHHHHHHhhcCC-------CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhhc
Q 009967          292 EDSLLVFDKLTE-------RN--IVTWNAVICGYAQNGRGEEAIEFFERMRI----NGIR--P-NGVTLLGLLWACNHTG  355 (521)
Q Consensus       292 ~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~~  355 (521)
                      +.|...+.+...       +.  ..++..+...+...|++++|...+++...    .+..  | ....+..+...+...|
T Consensus       508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G  587 (903)
T PRK04841        508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA  587 (903)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence            999999988763       11  23455667778899999999999888655    2211  1 1233445555677789


Q ss_pred             cHHHHHHHHHHchHhCC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHH-----HHHHHHHhcC
Q 009967          356 LVEKGYSYFSQAKLEDP-GML--KPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGIGFWK-----ALLGGCQIHS  423 (521)
Q Consensus       356 ~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~-----~l~~~~~~~g  423 (521)
                      ++++|...+++...... ..+  ....+..+...+...|++++|.+.+++..    .......+.     ..+..+...|
T Consensus       588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  667 (903)
T PRK04841        588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG  667 (903)
T ss_pred             CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence            99999999888753211 112  23345557778889999999998887642    111111111     1123345679


Q ss_pred             CHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          424 NVELGEFAARRILALDPEDVS----SYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       424 ~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +.+.|...+.......+....    .+..++.++...|++++|...+++....
T Consensus       668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999998776653322222    2457888899999999999999987654

>PLN02789 farnesyltranstransferase

Probab=98.67  E-value=8.9e-06  Score=75.16  Aligned_cols=223  Identities=17%  Similarity=0.162  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK  287 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  287 (521)
                      +..+-..+...+..++|+.++.++...  .|+..                                  .+|+.-..++..
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~y----------------------------------taW~~R~~iL~~   83 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNY----------------------------------TVWHFRRLCLEA   83 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhH----------------------------------HHHHHHHHHHHH
Confidence            334444455666777777777777763  35432                                  223333333333


Q ss_pred             cC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967          288 CG-SMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRG--EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       288 ~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                      .| ++++++..++++.+   .+..+|+.....+.+.|+.  +++..+++++.+.. +-|..+|.....++...|++++++
T Consensus        84 L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL  162 (320)
T PLN02789         84 LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDEL  162 (320)
T ss_pred             cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHH
Confidence            34 34555555555543   2333454444444444432  45566666666533 224456666666666666677777


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHhh-CCCCC-CHHHHHHHHHHHHhc----CCHHHH
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRS---GRF----KEAKEFLYD-LPFDP-GIGFWKALLGGCQIH----SNVELG  428 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----g~~~~A  428 (521)
                      +.++++++...  .+...|+....++.+.   |..    +++.++..+ +...| |...|+.+...+...    +...+|
T Consensus       163 ~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~  240 (320)
T PLN02789        163 EYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEV  240 (320)
T ss_pred             HHHHHHHHHCC--CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhH
Confidence            77776664443  3344454444444333   222    345555533 33344 445777777776652    445678


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcC------------------ChHHHHHHHHHH
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAG------------------KWDNVSNIRREM  469 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m  469 (521)
                      .+.+.++...+|+++.++..|+..|....                  ..++|..+++.+
T Consensus       241 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l  299 (320)
T PLN02789        241 SSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL  299 (320)
T ss_pred             HHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence            88888888888888999999999988642                  336788888877

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.65  E-value=9.9e-07  Score=71.67  Aligned_cols=95  Identities=13%  Similarity=-0.037  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      .+..+...+...|++++|...|+... ..| +...|..+..++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            35567888999999999999999843 344 6778999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 009967          457 GKWDNVSNIRREMKEKG  473 (521)
Q Consensus       457 g~~~~A~~~~~~m~~~g  473 (521)
                      |++++|+..|++..+..
T Consensus       106 g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        106 GEPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999987653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=7.8e-06  Score=79.68  Aligned_cols=189  Identities=19%  Similarity=0.185  Sum_probs=158.6

Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       271 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      .+|-...-..+...+...|-...|..+|+++     ..|.-.|.+|+..|+..+|..+..+-.+  -+||..-|..+++.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV  466 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence            3455556677888899999999999999975     5788889999999999999999988777  36899999999998


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDP-GIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      .....-+++|.++.+....+        .-..+.....+.+++.++.+.++. +...| ...+|-.+..+..+.++++.|
T Consensus       467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            88888899999998876322        222333344457999999999986 55444 466899999899999999999


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      .+.|...+..+|++...|+.+..+|.+.|+..+|...+++..+...
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999999999999988773

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.65  E-value=6.7e-06  Score=85.46  Aligned_cols=218  Identities=16%  Similarity=0.124  Sum_probs=154.0

Q ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHH
Q 009967          140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--------PNVVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWN  209 (521)
Q Consensus       140 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~  209 (521)
                      |-+...|-..|......+++++|.+++++...        .-...|.++++.-...|.-+...++|++..+  .....|.
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence            44556677788888888888888888888764        1234677777777777888888888888776  2346688


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhc
Q 009967          210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKC  288 (521)
Q Consensus       210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  288 (521)
                      .|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++..+++.-++ -.+....-.++.-.+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            8888888888888888888888775 2255667777777777777777788887777765443 2344445556666677


Q ss_pred             CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhccHH
Q 009967          289 GSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--TLLGLLWACNHTGLVE  358 (521)
Q Consensus       289 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~  358 (521)
                      |+.+.+..+|+....   .....|+..+..-.++|+.+.+..+|++....++.|-..  .|...+..--..|+-+
T Consensus      1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            888888888877764   234578888888888888888888888887777666443  4445554444444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=3e-06  Score=80.33  Aligned_cols=246  Identities=15%  Similarity=0.070  Sum_probs=149.5

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967          216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL  295 (521)
Q Consensus       216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  295 (521)
                      .+.|+..+|.-.|+..+..+ +-+...|..+...-+..++-..|...+.++++..+. +..+.-+|.-.|...|.-..|.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence            34444444444444444432 112233334444444444444444444444444333 4555555555566666655666


Q ss_pred             HHHhhcCCCCh-hHHHHHH---------HHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967          296 LVFDKLTERNI-VTWNAVI---------CGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYF  364 (521)
Q Consensus       296 ~~~~~~~~~~~-~~~~~li---------~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  364 (521)
                      +.++.-....+ ..|....         ..+.....+....++|-++.. .+.++|......|.-.|.-.|++++|...|
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            55554321000 0000000         111112223444555555443 454467777777777788899999999999


Q ss_pred             HHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 009967          365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILALDPE-  441 (521)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-  441 (521)
                      +.+....+  -|..+||.|.-.++...+.++|+..|++ +.++|+.. ++..|..+|+..|.+++|...|-.++.+.+. 
T Consensus       454 ~~AL~v~P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  454 EAALQVKP--NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             HHHHhcCC--chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            99875544  4566899999999999999999999988 45678744 8888999999999999999999999886543 


Q ss_pred             ---------CchHHHHHHHHHHhcCChHHHHHH
Q 009967          442 ---------DVSSYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       442 ---------~~~~~~~l~~~~~~~g~~~~A~~~  465 (521)
                               +-.+|.+|=.++.-.++.|-+.++
T Consensus       532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             cccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence                     124677777777777777755544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.62  E-value=1.7e-05  Score=79.92  Aligned_cols=378  Identities=10%  Similarity=-0.024  Sum_probs=187.3

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDL  152 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~  152 (521)
                      ..|..|...|...-+...|.+.|++..+.+ ..+..........|++..+++.|..+.-..-+.. ...-...|..+.-.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            356666666665556666666666666543 3445555566666666666666666622222111 00011122223334


Q ss_pred             HHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhH-HH--HHHHHHHhcCChHHHHH
Q 009967          153 YIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS-WN--AMIGGYSQTGRNEEAVN  226 (521)
Q Consensus       153 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~--~l~~~~~~~~~~~~a~~  226 (521)
                      |.+.++...|..-|+....   .|...|..+..+|.+.|++..|.++|.+...-++.. |.  -.....+..|.+.+|+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            5556666666666665554   244456666666666676666666666555422211 11  11223344566666666


Q ss_pred             HHHHHHHCC------CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHH
Q 009967          227 LFIEMLREG------LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-------LGKLDVFVGNSLISFYAKCGSMED  293 (521)
Q Consensus       227 ~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~  293 (521)
                      .+.......      ..--..++..+...+...|-...+..+++...+.       ....+...|-.+          ..
T Consensus       652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sd  721 (1238)
T KOG1127|consen  652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SD  721 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hH
Confidence            665544320      0011122222222223333333333333332211       000011111111          12


Q ss_pred             HHHHHhhcCCCC---hhHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--------hcc
Q 009967          294 SLLVFDKLTERN---IVTWNAVICGYAQNGRG---E---EAIEFFERMRINGIRPNGVTLLGLLWACNH--------TGL  356 (521)
Q Consensus       294 A~~~~~~~~~~~---~~~~~~li~~~~~~~~~---~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~~~  356 (521)
                      |-.+|-... |+   ......+..-.-..+..   |   -+.+.+-.-.+  ...+..+|..++..|.+        ..+
T Consensus       722 ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~  798 (1238)
T KOG1127|consen  722 ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKD  798 (1238)
T ss_pred             HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchh
Confidence            222333222 22   11111111111111111   1   11111111111  11223344444433322        123


Q ss_pred             HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967          357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARR  434 (521)
Q Consensus       357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  434 (521)
                      ...|...+.+.++...  .+..+|+.|.-. ...|++.-|...|-+-.  .+....+|..+.-.+....|++-|...|.+
T Consensus       799 ~~~Ai~c~KkaV~L~a--nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~  875 (1238)
T KOG1127|consen  799 ACTAIRCCKKAVSLCA--NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS  875 (1238)
T ss_pred             HHHHHHHHHHHHHHhh--ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence            3467777776654332  345566666554 66677777777765532  244566888888888888999999999999


Q ss_pred             HHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       435 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      ...++|.+...|...+.+....|+.-++..+|..
T Consensus       876 ~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  876 VQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            9999999888888888888888887777777765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=4.3e-05  Score=65.65  Aligned_cols=159  Identities=15%  Similarity=0.070  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----H  353 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~  353 (521)
                      ...-...|+..|++++|.+......  +......=+..+.+..+++-|.+.+++|.+.   -+..|.+.|..++.    .
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG  185 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence            3334455677777777777777632  2333333334455666777777777777763   25556666666553    2


Q ss_pred             hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHH
Q 009967          354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHS-NVELGEF  430 (521)
Q Consensus       354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~  430 (521)
                      .+.+..|.-+|+++.++.+  |++.+.+...-+....|++++|..+++..-  ...++.+...++-.-...| +.+-..+
T Consensus       186 gek~qdAfyifeE~s~k~~--~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r  263 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTP--PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER  263 (299)
T ss_pred             chhhhhHHHHHHHHhcccC--CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence            3456777777777753344  676677777777777777777777776632  1233444444443333333 3344445


Q ss_pred             HHHHHHhcCCCCc
Q 009967          431 AARRILALDPEDV  443 (521)
Q Consensus       431 ~~~~~~~~~p~~~  443 (521)
                      .+.++....|.++
T Consensus       264 ~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  264 NLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHhcCCcch
Confidence            5566666666554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.58  E-value=7.3e-06  Score=83.53  Aligned_cols=175  Identities=9%  Similarity=-0.001  Sum_probs=127.5

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHH
Q 009967          304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC  382 (521)
Q Consensus       304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  382 (521)
                      .++..+..|.....+.|.+++|..+++...+  +.|+.. ....+..++.+.+++++|....++.....+  .+......
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~~~~  159 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--SSAREILL  159 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHHHHH
Confidence            3477888888888999999999999999887  457655 666777888899999999999998864443  45567788


Q ss_pred             HHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 009967          383 MVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD  460 (521)
Q Consensus       383 l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  460 (521)
                      +..++.+.|++++|..+|+++. ..|+ ..++..+..++...|+.++|...|+++++..-+-...|+.++      ++..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~  233 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN  233 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence            8888999999999999999864 3444 668888888899999999999999999886544444444332      2334


Q ss_pred             HHHHHHHHHHhCCCccCCcceEEEECCE
Q 009967          461 NVSNIRREMKEKGMTRVPGCSWIEIKSK  488 (521)
Q Consensus       461 ~A~~~~~~m~~~g~~~~~~~~~~~~~~~  488 (521)
                      .-...++++.-.+......++.+.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (694)
T PRK15179        234 ADLAALRRLGVEGDGRDVPVSILVLEKM  261 (694)
T ss_pred             HHHHHHHHcCcccccCCCceeeeeHHHH
Confidence            4455666665555444444444444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.57  E-value=1.8e-06  Score=68.91  Aligned_cols=117  Identities=10%  Similarity=0.076  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      ..-.+...+...|++++|..+|+-+. ..| +...|..|..++...|++++|+..|.++..++|++|..+..++.++...
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            44456667778999999999999854 344 5668888999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 009967          457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE  518 (521)
Q Consensus       457 g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  518 (521)
                      |+.+.|++.|+..+...                       ..+|+...|.+.-+.+++.+..
T Consensus       117 G~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~  155 (157)
T PRK15363        117 DNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD  155 (157)
T ss_pred             CCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence            99999999999877543                       2458888888888888777664

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.57  E-value=1.6e-05  Score=81.94  Aligned_cols=40  Identities=13%  Similarity=0.077  Sum_probs=21.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       415 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      +-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus       229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            3334444555555555555555555555555555555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.54  E-value=1.7e-05  Score=68.13  Aligned_cols=156  Identities=13%  Similarity=0.098  Sum_probs=100.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967          310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR  389 (521)
Q Consensus       310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (521)
                      ..+-..+...|+-+....+........ .-|.......+......|++..|...++++....+  +|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p--~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP--TDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC--CChhhhhHHHHHHHH
Confidence            444555566666666666665543321 12333444466666777777777777777643333  666777777777777


Q ss_pred             cCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          390 SGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       390 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      .|+++.|..-|.+. .+ ..++...+.+...+...||.+.|..++.+.....+.+..+-..++......|++++|..+..
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            77777777666652 23 33445667777777777777777777777777777677777777777777777777776654


Q ss_pred             H
Q 009967          468 E  468 (521)
Q Consensus       468 ~  468 (521)
                      +
T Consensus       227 ~  227 (257)
T COG5010         227 Q  227 (257)
T ss_pred             c
Confidence            4

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.51  E-value=1.4e-05  Score=71.57  Aligned_cols=182  Identities=13%  Similarity=0.011  Sum_probs=126.7

Q ss_pred             CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hh---HH
Q 009967          238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-IV---TW  309 (521)
Q Consensus       238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~  309 (521)
                      .....+......+...|+++.|...++.+.+..+..  ....+..+..++.+.|+++.|...++++.+  |+ ..   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            344567777888999999999999999998876531  124667788999999999999999999975  32 22   45


Q ss_pred             HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHH
Q 009967          310 NAVICGYAQN--------GRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY  380 (521)
Q Consensus       310 ~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  380 (521)
                      ..+..++...        |++++|.+.++.+...  .|+.. ....+...    +....      ..         ....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~---------~~~~  169 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RL---------AGKE  169 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HH---------HHHH
Confidence            5566666654        7899999999999875  35543 22222111    00000      00         0112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC-CC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYDLP-FD---P-GIGFWKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~~~-~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      ..+...|.+.|++++|...++... ..   | ....+..+..++...|++++|...++.+....|
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            356677888899999998888742 22   2 245788888889999999999998888877655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.50  E-value=1.8e-05  Score=67.99  Aligned_cols=154  Identities=12%  Similarity=0.098  Sum_probs=116.0

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967          282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       282 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                      +-.|...|+++.+....+.+..+..        .+...++.+++...++...... +.|...|..+...|...|+++.|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4567788888877655544433220        1112566778888888877654 456778999999999999999999


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLL-SRSGR--FKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRIL  436 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  436 (521)
                      ..|+++....+  .+...+..+..++ .+.|+  .++|.+++++.. ..| +...+..+...+...|++++|+..+++++
T Consensus        94 ~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999875554  4667788888864 67777  599999999853 345 56688888888999999999999999999


Q ss_pred             hcCCCCchHH
Q 009967          437 ALDPEDVSSY  446 (521)
Q Consensus       437 ~~~p~~~~~~  446 (521)
                      +..|++..-+
T Consensus       172 ~l~~~~~~r~  181 (198)
T PRK10370        172 DLNSPRVNRT  181 (198)
T ss_pred             hhCCCCccHH
Confidence            9988765544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.50  E-value=1.5e-05  Score=68.50  Aligned_cols=135  Identities=18%  Similarity=0.174  Sum_probs=113.3

Q ss_pred             CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 009967          338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKAL  415 (521)
Q Consensus       338 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l  415 (521)
                      .|+......+-..+.-.|+-+....+.......++  .+......++....+.|++..|...+++..  .++|...|+.+
T Consensus        63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             CcchHHHHHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            45444335566677778888888888877643333  566677779999999999999999999853  36778899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      ..+|.+.|+++.|...|.+++++.|+++..++.++..|.-.|+++.|..++......+.
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999876554

>PF12854 PPR_1: PPR repeat

Probab=98.49  E-value=2.2e-07  Score=53.76  Aligned_cols=32  Identities=25%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             CCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967          138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDT  169 (521)
Q Consensus       138 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  169 (521)
                      |+.||..+|+.+|++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56677777777777777777777777777766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.47  E-value=1.5e-05  Score=81.22  Aligned_cols=141  Identities=13%  Similarity=0.091  Sum_probs=112.2

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 009967          272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGL  347 (521)
Q Consensus       272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l  347 (521)
                      ..++..+..|.....+.|.+++|..+++...+  |+ ......++..+.+.+++++|...+++.....  |+.. ....+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence            34688888899999999999999999999986  44 4577778889999999999999999988854  6555 55566


Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALL  416 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~  416 (521)
                      ..++...|++++|..+|+++....  .-+..++..+..++...|+.++|...|++..  ..|....|+.++
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            667889999999999999997422  2346788899999999999999999998853  255556655554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=7.7e-05  Score=64.16  Aligned_cols=150  Identities=16%  Similarity=0.122  Sum_probs=96.3

Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----c
Q 009967          245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVICGYAQ----N  319 (521)
Q Consensus       245 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~  319 (521)
                      .-...|...++++.|.+......      +......=+.++.+..+++-|.+.+++|.+- +..+.+.|..++.+    .
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc
Confidence            33444555555555555544411      2233333345566777788888888888873 34466666666654    3


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHH-HH
Q 009967          320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA-KE  398 (521)
Q Consensus       320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~  398 (521)
                      +.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++.+..+..  -++.+...++.+-...|...++ .+
T Consensus       187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~Gkd~~~~~r  263 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLANLIVLALHLGKDAEVTER  263 (299)
T ss_pred             hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCCChHHHHH
Confidence            4678888888888764 568888888888888888888888888888875554  4566666666666666655443 34


Q ss_pred             HHhhC
Q 009967          399 FLYDL  403 (521)
Q Consensus       399 ~~~~~  403 (521)
                      .+.++
T Consensus       264 ~l~QL  268 (299)
T KOG3081|consen  264 NLSQL  268 (299)
T ss_pred             HHHHH
Confidence            44444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.46  E-value=8.7e-05  Score=76.68  Aligned_cols=235  Identities=7%  Similarity=-0.011  Sum_probs=111.9

Q ss_pred             hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcC
Q 009967          108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR  187 (521)
Q Consensus       108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  187 (521)
                      ...+..|+..+...+++++|.++.+...+.. +-....|-.+.-.+.+.++.+.+..+  .+           +......
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-----------l~~~~~~   96 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL-----------IDSFSQN   96 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh-----------hhhcccc
Confidence            3445555555555566666666655444432 11222222233344455554444333  11           1111122


Q ss_pred             CCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHH
Q 009967          188 ERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC  265 (521)
Q Consensus       188 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  265 (521)
                      .++.-...+...+..  .+..++..++.+|-+.|+.++|..+|+++++.+ +-|....+.+...++.. +++.|..++..
T Consensus        97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720         97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            222222222222222  233466677777777777777777777777755 33444555555555555 55555555554


Q ss_pred             HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHH
Q 009967          266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTL  344 (521)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~  344 (521)
                      ++..               |...+++..+.++|.++.+-++.-             ++.-..+.+.+... |..--..++
T Consensus       175 AV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~~~~~~~  226 (906)
T PRK14720        175 AIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFTRLVGLL  226 (906)
T ss_pred             HHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccchhHHHH
Confidence            4332               444455555555555555433221             11122222222221 111223344


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS  388 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (521)
                      ..+-..|...++++++..+++.+.+..+  -|......++.+|.
T Consensus       227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~--~n~~a~~~l~~~y~  268 (906)
T PRK14720        227 EDLYEPYKALEDWDEVIYILKKILEHDN--KNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHhcCC--cchhhHHHHHHHHH
Confidence            4455566666677777777777653332  23344555555554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.45  E-value=3.7e-06  Score=67.94  Aligned_cols=95  Identities=25%  Similarity=0.342  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      .....+...+...|++++|.+.++.+. ..| +...|..+...+...|+++.|...++++++.+|+++..+..++.++..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            345556666667777777777776642 223 455666677777777777777777777777777777777777778888


Q ss_pred             cCChHHHHHHHHHHHhC
Q 009967          456 AGKWDNVSNIRREMKEK  472 (521)
Q Consensus       456 ~g~~~~A~~~~~~m~~~  472 (521)
                      .|++++|...+++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        98 LGEPESALKALDLAIEI  114 (135)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            88888888877776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12854 PPR_1: PPR repeat

Probab=98.41  E-value=5.4e-07  Score=52.11  Aligned_cols=32  Identities=31%  Similarity=0.506  Sum_probs=21.2

Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967          270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL  301 (521)
Q Consensus       270 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  301 (521)
                      |+.||..+|++|+++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666665

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.39  E-value=0.0022  Score=60.95  Aligned_cols=387  Identities=13%  Similarity=0.101  Sum_probs=228.5

Q ss_pred             hhhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcC-CCC
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA-LED  123 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~  123 (521)
                      |++-+..+ .++++++.++++..  | ....|..-+..-.+.++++...++|.++...-  .+...|...+.--.+ .++
T Consensus        26 lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~  102 (656)
T KOG1914|consen   26 LIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGK  102 (656)
T ss_pred             HHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccC
Confidence            66666555 88999999988764  3 45678888999999999999999999988653  345555555543221 222


Q ss_pred             h----HHHHHHHHHHH-HhCCCC-cHHHHHHHHHHH---------HcCCCHHHHHHHhhcCCC-C---------CchhHH
Q 009967          124 L----NLGKQLHAWAT-KVGLQS-NVFVGSAILDLY---------IKLSSIEEATRVFEDTHN-P---------NVVSYT  178 (521)
Q Consensus       124 ~----~~a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~-~---------~~~~~~  178 (521)
                      .    ....+.|+-.. +.|+.+ +..+|+..+..+         ....+++...+++.++.. |         |-..|.
T Consensus       103 ~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE  182 (656)
T KOG1914|consen  103 LFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFE  182 (656)
T ss_pred             cchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            2    22334444333 345443 334455554432         333456667777777764 2         111222


Q ss_pred             HHHHHH-------HcCCCHHHHHHHHhhCCC---------C------------ChhHHHHHHHHHHhcCC--------hH
Q 009967          179 TMICGL-------LKRERFEDALKLFQEMPH---------R------------NVVSWNAMIGGYSQTGR--------NE  222 (521)
Q Consensus       179 ~li~~~-------~~~g~~~~a~~~~~~~~~---------~------------~~~~~~~l~~~~~~~~~--------~~  222 (521)
                      .=|+..       -+...+..|.++++++..         +            .+..|..+|.--...+-        ..
T Consensus       183 ~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~  262 (656)
T KOG1914|consen  183 QEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTR  262 (656)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHH
Confidence            112111       123445566666665431         0            01224333332221110        01


Q ss_pred             HHHHHHHHH-HHCCCCCChhhHH-H----HHHHHHhhcch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--
Q 009967          223 EAVNLFIEM-LREGLVPNHSTLP-C----AIIAAANIAAL-------GMGKSFHACAVKFLGKLDVFVGNSLISFYAK--  287 (521)
Q Consensus       223 ~a~~~~~~m-~~~~~~p~~~~~~-~----ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  287 (521)
                      +..-++++. .--+..|+..... .    .-..+...|+.       +++..+++.....-...+..+|..+.+.--.  
T Consensus       263 Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~  342 (656)
T KOG1914|consen  263 RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRY  342 (656)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence            222222222 1223333322111 1    11122333333       4444555554443333344444444332111  


Q ss_pred             -cCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHH
Q 009967          288 -CGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       288 -~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                       ....+.....++++..    .-..+|-.++..-.+......|..+|.++.+.+..+ +....+.++..+| .++.+-|.
T Consensus       343 ~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~Af  421 (656)
T KOG1914|consen  343 DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAF  421 (656)
T ss_pred             ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHH
Confidence             1135555566666553    223478888888888889999999999999988777 6667778887665 47889999


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF---DPG--IGFWKALLGGCQIHSNVELGEFAARRIL  436 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~  436 (521)
                      ++|+.-..+.|  .++..-...++.+...|+-..+..+|++...   .|+  ...|..++..-..-||...+.++-++..
T Consensus       422 rIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  422 RIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            99998776776  4555566788889999999999999998642   333  4589999999999999999999999888


Q ss_pred             hcCC
Q 009967          437 ALDP  440 (521)
Q Consensus       437 ~~~p  440 (521)
                      ...|
T Consensus       500 ~af~  503 (656)
T KOG1914|consen  500 TAFP  503 (656)
T ss_pred             Hhcc
Confidence            8666

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.36  E-value=0.0043  Score=62.71  Aligned_cols=413  Identities=12%  Similarity=0.065  Sum_probs=239.3

Q ss_pred             cccCCChhHHHHHhccCCCC-CcccHHHHHHHH--HhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHH
Q 009967           52 GSESDKFSSVHQVFDEVPDL-NVVSATTIIGRF--AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK  128 (521)
Q Consensus        52 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  128 (521)
                      ....++|..|.+..+++.+. ....|..++.++  .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            34567888888888776532 223455555554  5778899999888887766533 7788888888888899999999


Q ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHH----HHHHhhcCCCCCchhHHHHHHHHHcCCC----------HHHHH
Q 009967          129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE----ATRVFEDTHNPNVVSYTTMICGLLKRER----------FEDAL  194 (521)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~  194 (521)
                      .+|+...+.  .|+......+..+|.+.+++.+    |.++++... .+...+...++.+.+.-.          ..-|.
T Consensus        98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            999988874  4667777778888888877654    445555433 334455555555544321          23455


Q ss_pred             HHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967          195 KLFQEMPHRN-----VVSWNAMIGGYSQTGRNEEAVNLFI-EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       195 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      +.++.+.+.+     ..-...-...+...|++++|..++. ...+.-..-+...-+.-+..+...+.+.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            6666655433     1111222334456788888888883 344433333444445667777888888888888888888


Q ss_pred             cCCCCChhHHHHHHHHHH----------------hcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHH---HcCChHHHHHH
Q 009967          269 FLGKLDVFVGNSLISFYA----------------KCGSMEDSLLVFDKLTER-NIVTWNAVICGYA---QNGRGEEAIEF  328 (521)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~~~A~~~  328 (521)
                      .|.. |   |...++.+.                ..+..+...+...+.... ....|-+-+.++.   .-|+.+++...
T Consensus       255 k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~  330 (932)
T KOG2053|consen  255 KGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY  330 (932)
T ss_pred             hCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence            7755 2   322222111                112233333333332221 1122333333332   34666665544


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-Chh---HHHHHHHHHHhcCCH-----HHHHHH
Q 009967          329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPE---HYACMVDLLSRSGRF-----KEAKEF  399 (521)
Q Consensus       329 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~---~~~~l~~~~~~~g~~-----~~A~~~  399 (521)
                      |-+  +.|-+|   .+..=+..|...=..++-..++.......+... +..   -+...+..-.-.|.+     +.-..+
T Consensus       331 y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~  405 (932)
T KOG2053|consen  331 YFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY  405 (932)
T ss_pred             HHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence            432  233333   222223333333344555666665542222111 111   122233333333422     222333


Q ss_pred             HhhC--------C----CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          400 LYDL--------P----FDPGI---------GFWKALLGGCQIHSNVE---LGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       400 ~~~~--------~----~~~~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      +++.        .    .-|..         .+.+.|+..+.+.+|..   +|+.+++.....+|.|..+-..++++|.-
T Consensus       406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~  485 (932)
T KOG2053|consen  406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSY  485 (932)
T ss_pred             HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            3221        1    11221         14566777888877654   78899999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhCCCccC
Q 009967          456 AGKWDNVSNIRREMKEKGMTRV  477 (521)
Q Consensus       456 ~g~~~~A~~~~~~m~~~g~~~~  477 (521)
                      .|-+..|.+.++.+--+.+..+
T Consensus       486 lGa~p~a~~~y~tLdIK~IQ~D  507 (932)
T KOG2053|consen  486 LGAFPDAYELYKTLDIKNIQTD  507 (932)
T ss_pred             hcCChhHHHHHHhcchHHhhhc
Confidence            9999999999998865555443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=0.0001  Score=69.06  Aligned_cols=117  Identities=21%  Similarity=0.152  Sum_probs=70.3

Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A  428 (521)
                      +...|+++.|+..++.+....+  -|+.......+.+.+.|+.++|.+.++++. ..|+ ...+-.+..++.+.|++++|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence            3445666666666666654443  344445555666666666666666666532 3444 33555566666666666666


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      +..+.+....+|+++..|..|+.+|...|+..+|.....++
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            66666666666666666666666666666665555555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=0.00044  Score=64.92  Aligned_cols=133  Identities=14%  Similarity=0.165  Sum_probs=69.4

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          215 YSQTGRNEEAVNLFIEMLREGLVPNHSTL-PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED  293 (521)
Q Consensus       215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  293 (521)
                      +...|+++.|+..++.+...  .|+...| ......+...++..+|.+.++.++...+. .....-.+.+++.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence            33445555555555554442  1333222 23334445555555555555555544333 24444556666666666666


Q ss_pred             HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          294 SLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       294 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                      |+.+++....   .|+..|..|.++|...|+..++..-..+                  .+...|+++.|...+....
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence            6666666553   3455666666666666666555543332                  2344556666666655554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.31  E-value=1.8e-05  Score=74.71  Aligned_cols=122  Identities=13%  Similarity=0.091  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHh
Q 009967          344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQI  421 (521)
Q Consensus       344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~  421 (521)
                      ...|+..+...++++.|..+++++.+..   |+  ....+++.+...++..+|.+++.+. ...| +..........+..
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            3455566666777888888888876333   34  3445777777777778888877763 2233 55566666777899


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      .++++.|+.+.+++....|.+..+|..|+.+|...|++++|+..++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN02789 farnesyltranstransferase

Probab=98.30  E-value=0.00014  Score=67.34  Aligned_cols=189  Identities=14%  Similarity=0.085  Sum_probs=136.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNG-RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL  356 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  356 (521)
                      +-..+...+..++|..+..++.+.+   ..+|+....++...| ++++++..++++.+.. +-+..+|+.-...+.+.|+
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~  121 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP  121 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence            3344555678889999988887633   346666666666677 6899999999988754 2233456655445555565


Q ss_pred             --HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc---CC----H
Q 009967          357 --VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH---SN----V  425 (521)
Q Consensus       357 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~----~  425 (521)
                        .+++..+++++.+..+  -+..+|.....++.+.|+++++++.++++. . ..+..+|+.....+...   |.    .
T Consensus       122 ~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~  199 (320)
T PLN02789        122 DAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR  199 (320)
T ss_pred             hhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence              3677888888875554  566788888888999999999999999863 2 34566777776665544   22    2


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----CChHHHHHHHHHHHhC
Q 009967          426 ELGEFAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREMKEK  472 (521)
Q Consensus       426 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~  472 (521)
                      +.++....+++..+|+|..+|+.+...+...    ++..+|.+.+.+..+.
T Consensus       200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~  250 (320)
T PLN02789        200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK  250 (320)
T ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence            5788888899999999999999999999883    4456788887776553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.28  E-value=3.5e-05  Score=62.19  Aligned_cols=114  Identities=9%  Similarity=0.014  Sum_probs=86.0

Q ss_pred             HHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 009967          328 FFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF  405 (521)
Q Consensus       328 ~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  405 (521)
                      ++++...  ..|+. .....+...+...|++++|.+.++.+....+  .++..+..+..++...|++++|...++.. ..
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455554  33443 4455666778888999999999988864443  46677888889999999999999888874 23


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967          406 -DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS  445 (521)
Q Consensus       406 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  445 (521)
                       +.+...+..+...+...|+++.|...|+++++.+|++...
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence             3456677778888999999999999999999999976653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=0.00012  Score=62.51  Aligned_cols=185  Identities=16%  Similarity=0.188  Sum_probs=144.3

Q ss_pred             hcCCHHHHHHHHhhcCC--------CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhhcc
Q 009967          287 KCGSMEDSLLVFDKLTE--------RNIV-TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW-ACNHTGL  356 (521)
Q Consensus       287 ~~g~~~~A~~~~~~~~~--------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~  356 (521)
                      ...+.++..+++..+..        ++.. .|..++-+....|+.+.|...++.+... + |.+.-...+-. -+...|+
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~  101 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN  101 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence            35688899999988763        3332 4555666677889999999999998875 3 66554333322 2567899


Q ss_pred             HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967          357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARR  434 (521)
Q Consensus       357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  434 (521)
                      +++|.++++.+.++.+  .|..++..-+-.....|+.-+|++-+.+..  +..|...|..+...|...|+++.|.-.+++
T Consensus       102 ~~~A~e~y~~lL~ddp--t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  102 YKEAIEYYESLLEDDP--TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             hhhHHHHHHHHhccCc--chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            9999999999986653  566677777777778888888887776632  467899999999999999999999999999


Q ss_pred             HHhcCCCCchHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCc
Q 009967          435 ILALDPEDVSSYVMLSNALSVAG---KWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       435 ~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~  475 (521)
                      ++=.+|-++..+..++..+.-.|   +..-|+++|.+..+....
T Consensus       180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence            99999999999999999977665   456788999998876553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=0.00023  Score=60.87  Aligned_cols=199  Identities=14%  Similarity=0.087  Sum_probs=141.8

Q ss_pred             hcchHHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh-HHHHHHHHHHHcCChHH
Q 009967          253 IAALGMGKSFHACAVK---FL-GKLDVF-VGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV-TWNAVICGYAQNGRGEE  324 (521)
Q Consensus       253 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~  324 (521)
                      ..+.++..+++.++..   .| ..++.. ++..++-+....|+.+.|..+++.+..  |+.. +-..-...+-..|++++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence            3466777777777754   23 444443 445556667788999999999998875  3322 11111223455799999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967          325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP  404 (521)
Q Consensus       325 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  404 (521)
                      |+++++.+.+.. +-|..++..=+...-..|+.-+|++-+....+...  .|...|..+...|...|+++.|.-.++++.
T Consensus       105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~--~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM--NDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            999999999876 34555666555566667777788887777755554  788999999999999999999999999964


Q ss_pred             -CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          405 -FDP-GIGFWKALLGGCQIH---SNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       405 -~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                       ..| ++..+..+...+.-.   .+.+.|.++|.+++++.|.+...+..+..++.
T Consensus       182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence             355 455667777764433   48889999999999999976666665554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.25  E-value=7.8e-05  Score=70.41  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967          276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG  355 (521)
Q Consensus       276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  355 (521)
                      .....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+...+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            3455667777788999999999999998777788888899988999999999999988642 335556666666688999


Q ss_pred             cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967          356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF  405 (521)
Q Consensus       356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  405 (521)
                      +++.|..+.+++....+  .+..+|..|+.+|.+.|+++.|+-.++.++.
T Consensus       249 ~~~lAL~iAk~av~lsP--~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  249 KYELALEIAKKAVELSP--SEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             CHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            99999999999874443  3455899999999999999999999998863

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.22  E-value=0.0091  Score=60.46  Aligned_cols=188  Identities=12%  Similarity=0.113  Sum_probs=134.0

Q ss_pred             hhhhc--ccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC
Q 009967           48 SVSCG--SESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE  122 (521)
Q Consensus        48 l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  122 (521)
                      .+.++  .|.|+.++|..+++....   .|..+...+-..|...|+.++|..+|++..+.  .|+......+..+|.+.+
T Consensus        47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~  124 (932)
T KOG2053|consen   47 VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK  124 (932)
T ss_pred             HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence            44444  488999999999987653   36678888888999999999999999999875  477888888999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCC----------CHHHHHHHhhcCCCCC--chh---HHHHHHHHHcC
Q 009967          123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS----------SIEEATRVFEDTHNPN--VVS---YTTMICGLLKR  187 (521)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~a~~~~~~~~~~~--~~~---~~~li~~~~~~  187 (521)
                      ++.+-.++--++-+ .++-+...+-+++..+...-          -..-|.+.++.+.+.+  ..+   .......+-..
T Consensus       125 ~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~  203 (932)
T KOG2053|consen  125 SYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ  203 (932)
T ss_pred             HHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence            88877666666655 34566777777777766532          1234555666655522  111   12223445678


Q ss_pred             CCHHHHHHHHhh-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 009967          188 ERFEDALKLFQE-----MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH  240 (521)
Q Consensus       188 g~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~  240 (521)
                      |++++|.+++..     ....+...-+--+..+...+++.+..++-.++...|  +|.
T Consensus       204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd  259 (932)
T KOG2053|consen  204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD  259 (932)
T ss_pred             ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc
Confidence            899999999842     222344455566778888899999999998888876  553

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.21  E-value=2.8e-06  Score=49.92  Aligned_cols=35  Identities=37%  Similarity=0.484  Sum_probs=31.3

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE  108 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~  108 (521)
                      .+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999998874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.20  E-value=7e-05  Score=61.10  Aligned_cols=114  Identities=13%  Similarity=0.041  Sum_probs=56.4

Q ss_pred             hccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCHH----HHHHHHHHHHhcCCHHH
Q 009967          354 TGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPF-DPGIG----FWKALLGGCQIHSNVEL  427 (521)
Q Consensus       354 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~  427 (521)
                      .++...+...++.+....+-.+- ....-.+...+...|++++|...|+.+.. .|+..    ....|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            45555555555555433332111 11223344555555555555555555321 12221    23334445556666666


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      |+..++.... .+-.+..+...+.+|.+.|++++|+..|++
T Consensus       104 Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6666644221 222455566666666667777776666654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.20  E-value=0.0055  Score=57.18  Aligned_cols=407  Identities=10%  Similarity=0.065  Sum_probs=217.9

Q ss_pred             cccCCChhHHHHHhccCCCC---Ccc------cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHH--HcC
Q 009967           52 GSESDKFSSVHQVFDEVPDL---NVV------SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS--STA  120 (521)
Q Consensus        52 ~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~  120 (521)
                      +-+++++.+|.++|.++-+.   +..      .-+.++++|..+ +.+.....+....+.  .| ...|..+..+  +.+
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence            44788999999999887532   212      234566666654 455555555555543  23 3445555555  457


Q ss_pred             CCChHHHHHHHHHHHHh--CCCC------------cHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--------CCchhHH
Q 009967          121 LEDLNLGKQLHAWATKV--GLQS------------NVFVGSAILDLYIKLSSIEEATRVFEDTHN--------PNVVSYT  178 (521)
Q Consensus       121 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~  178 (521)
                      .+++++|.+.+......  +..+            |...-+..+.++...|.+.++..+++++.+        -+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            78899998888876654  2222            222335667788889999999988888764        4667777


Q ss_pred             HHHHHHHcCCC---------------HHHHHHHHhhCCC----------CChhHHHHHHHHHHhc--CChHHHHHHHHHH
Q 009967          179 TMICGLLKRER---------------FEDALKLFQEMPH----------RNVVSWNAMIGGYSQT--GRNEEAVNLFIEM  231 (521)
Q Consensus       179 ~li~~~~~~g~---------------~~~a~~~~~~~~~----------~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m  231 (521)
                      .++-.++++=-               ++-+.-..+++..          |.......++....-.  .+..--.++++..
T Consensus       172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W  251 (549)
T PF07079_consen  172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW  251 (549)
T ss_pred             HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence            75544443211               1111111112211          1112222222222221  1122233444444


Q ss_pred             HHCCCCCChhhHH-HHHHHHHhhcchHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC
Q 009967          232 LREGLVPNHSTLP-CAIIAAANIAALGMGKSFHACAVKFLGKL----DVFVGNSLISFYAKCGSMEDSLLVFDKLT--ER  304 (521)
Q Consensus       232 ~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~  304 (521)
                      .+.-+.|+..... .+.....+  +.+++..+-+.+....+.+    -..++..++....+.++...|.+.+.-+.  +|
T Consensus       252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp  329 (549)
T PF07079_consen  252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP  329 (549)
T ss_pred             HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence            4444455533222 12222222  4445544444444332211    23455666666677777777777766554  34


Q ss_pred             ChhHHH-------HHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH---HHhhc-cHHHHHHHHHHch
Q 009967          305 NIVTWN-------AVICGYAQN----GRGEEAIEFFERMRINGIRPNGV-TLLGLLWA---CNHTG-LVEKGYSYFSQAK  368 (521)
Q Consensus       305 ~~~~~~-------~li~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~-~~~~a~~~~~~~~  368 (521)
                      +...-.       .+-+..+..    -+...=+.+|+......+  |.. -...++.+   +-+.| .-++|.++++.+.
T Consensus       330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il  407 (549)
T PF07079_consen  330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL  407 (549)
T ss_pred             cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            433211       222222211    112233445555544332  322 22222222   22333 3778888888876


Q ss_pred             HhCCCCCChhHHHHHH----HHHHhc---CCHHH---HHHHHhhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHH
Q 009967          369 LEDPGMLKPEHYACMV----DLLSRS---GRFKE---AKEFLYDLPFDP----GIGFWKALLGG--CQIHSNVELGEFAA  432 (521)
Q Consensus       369 ~~~~~~~~~~~~~~l~----~~~~~~---g~~~~---A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~  432 (521)
                      .-.+  -|..+-+.+.    ..|...   ..+.+   -+.++++..+.|    +...-+.|..+  +..+|++.++.-.-
T Consensus       408 ~ft~--yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys  485 (549)
T PF07079_consen  408 QFTN--YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS  485 (549)
T ss_pred             Hhcc--ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3332  2333333222    222221   11222   223333433333    33356667666  67899999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       433 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      .-+.++.| ++.+|..++-++....++++|+.++.++
T Consensus       486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            99999999 9999999999999999999999999974

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.15  E-value=3.9e-06  Score=48.91  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=28.0

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP  106 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p  106 (521)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888876

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.13  E-value=1.2e-05  Score=56.09  Aligned_cols=65  Identities=15%  Similarity=0.131  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 009967          408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG-KWDNVSNIRREMKEK  472 (521)
Q Consensus       408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~  472 (521)
                      +...|..+...+...|++++|+..|+++++.+|+++.+|..++.++...| ++++|+..+++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            45678889999999999999999999999999999999999999999999 799999999987653

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.08  E-value=4.9e-05  Score=56.62  Aligned_cols=93  Identities=20%  Similarity=0.258  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG  457 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  457 (521)
                      +..+...+...|++++|...+++. ...| +...+..+...+...|+++.|.+.+++.....|.++.++..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455667777788888888888764 2233 33566777777888889999999999998888888888888999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 009967          458 KWDNVSNIRREMKEK  472 (521)
Q Consensus       458 ~~~~A~~~~~~m~~~  472 (521)
                      ++++|...+++..+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999888886643

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.07  E-value=7.8e-06  Score=47.99  Aligned_cols=34  Identities=47%  Similarity=0.788  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN  340 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~  340 (521)
                      .+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3789999999999999999999999999999887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.06  E-value=1.7e-05  Score=54.51  Aligned_cols=58  Identities=17%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       415 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +...+...|++++|+..|+++++..|+++.++..++.++...|++++|...|+++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566788899999999999999999999999999999999999999999999988754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.06  E-value=7.5e-05  Score=58.59  Aligned_cols=93  Identities=12%  Similarity=0.075  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHH
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSN  451 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~  451 (521)
                      +..++..+.+.|++++|.+.++.+. ..|+    ...+..+..++...|+++.|...|+++....|++   +.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            3444444555555555555554432 1121    1233444555555566666666666665555543   344555556


Q ss_pred             HHHhcCChHHHHHHHHHHHhC
Q 009967          452 ALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       452 ~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ++...|++++|...++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            666666666666666655544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.04  E-value=0.00024  Score=57.97  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC--hhHHH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG----VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK--PEHYA  381 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~  381 (521)
                      .|..++..+ ..++...+...++.+.+..  |+.    .....+...+...|++++|...|+.+.... ..+.  .....
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l   89 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence            344445444 3677788887788877753  332    233344556777888888888888886333 1122  12344


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          382 CMVDLLSRSGRFKEAKEFLYDLPFD-PGIGFWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      .|..++...|++++|+..++..... .....+......+...|++++|+..|+++
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            5677788888888888888775422 22335555666788888888888888765

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.03  E-value=1.1e-05  Score=47.02  Aligned_cols=33  Identities=30%  Similarity=0.689  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRP  339 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p  339 (521)
                      .+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578899999999999999999999999888887

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.03  E-value=0.00014  Score=57.07  Aligned_cols=105  Identities=10%  Similarity=0.051  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALL  416 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~  416 (521)
                      ++..+...+...|++++|...|+.+....+-.+ ....+..+..++.+.|+++.|...++.+. ..|+    ..++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344555556667777777777777654443211 13345556777777777777777777642 2233    34566667


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          417 GGCQIHSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                      .++...|+.++|...++++++..|+++.+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            7777888888888888888888887665443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=0.00015  Score=68.84  Aligned_cols=103  Identities=17%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNV  425 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~  425 (521)
                      ...+...|+++.|...|+++....+  .+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            3445667888888888888765444  34556777777888888888888877764 2344 455777777777788888


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          426 ELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       426 ~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      ++|+..|+++++++|+++.+...+..+
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            888888888888888777766555444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.01  E-value=2.2e-05  Score=54.47  Aligned_cols=53  Identities=9%  Similarity=0.237  Sum_probs=47.2

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...|++++|++.|++++..+|+++.++..++.+|.+.|++++|..+++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999986654

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.01  E-value=0.011  Score=58.22  Aligned_cols=297  Identities=12%  Similarity=0.018  Sum_probs=174.8

Q ss_pred             cccccCCCcccchhhcccc-CCCCccchHHHHHHHhhcCCCchh---hhhhcccC----------CChhHHHHHhccCCC
Q 009967            5 LCICRSSLSLNKLSKLHSL-APNYLIETQKASVQKLETPAIRTD---SVSCGSES----------DKFSSVHQVFDEVPD   70 (521)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~---l~~~~~~~----------g~~~~A~~~~~~~~~   70 (521)
                      ..+++.+.+..+.+.--+. -+.++.-...+.+.++..| -.|+   +++.-.+.          =.+++|.+..+.  .
T Consensus       613 myifrgndpeEp~s~sGyIc~FedLeitsVlld~Il~~p-E~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEd--n  689 (1189)
T KOG2041|consen  613 MYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKILLTP-ENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIED--N  689 (1189)
T ss_pred             EEEecCcCccccccccceEEEeeceEEEEEEHhhHhcCc-CCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhc--C
Confidence            3455555555554443333 3444444445556666665 3444   33332222          234555555543  4


Q ss_pred             CCcccHHHHHHHHHhcCChHHHHHHHHHhHHC-CCCCC--------hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCC
Q 009967           71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPS--------EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS  141 (521)
Q Consensus        71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  141 (521)
                      |.+..|..+...-.+.-.++.|...|-+.... |++.-        ...-..=+  -+--|++++|+++|-+|-+++   
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD---  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD---  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh---
Confidence            66688998888877777888888887776542 32210        11111111  223478889988887776643   


Q ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC-----CchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 009967          142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNP-----NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS  216 (521)
Q Consensus       142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~  216 (521)
                            ..+..+.+.|||-...++++.-...     -...|+.+...++....+++|.+.|..-...     ...+.++.
T Consensus       765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly  833 (1189)
T KOG2041|consen  765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLY  833 (1189)
T ss_pred             ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHH
Confidence                  3466777888888888888775441     1246778888888888888888887766531     22345555


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 009967          217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL  296 (521)
Q Consensus       217 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  296 (521)
                      +..++++-..+-..     ++-+...+-.+..++.+.|.-++|.+.+-..   +.+      .+.+..|...++|.+|.+
T Consensus       834 ~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW~~ave  899 (1189)
T KOG2041|consen  834 RLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQWGEAVE  899 (1189)
T ss_pred             HHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHHHHHHH
Confidence            55555544443332     3345556667778888888888776654322   111      345667777888888888


Q ss_pred             HHhhcCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 009967          297 VFDKLTERNIVTWNA--------------VICGYAQNGRGEEAIEFFERMRI  334 (521)
Q Consensus       297 ~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~A~~~~~~m~~  334 (521)
                      +-++..-|.+.+.-+              -|..+.+.|++-.|-+++.+|.+
T Consensus       900 laq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  900 LAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence            877766554443211              23344556666666666666654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0002  Score=63.39  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967          375 LKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIH---SNVELGEFAARRILALDPEDVSSYVML  449 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l  449 (521)
                      -|...|..|...|.+.|+++.|..-|.+. .+ .+++..+..+..++...   ....++..+|++++..+|.|+.+...|
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            56778999999999999999999999873 22 55666777777774332   367789999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 009967          450 SNALSVAGKWDNVSNIRREMKEKGMTRVPG  479 (521)
Q Consensus       450 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  479 (521)
                      +..+...|++.+|...|+.|.+.....+|+
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            999999999999999999999886655543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.98  E-value=8.3e-06  Score=59.41  Aligned_cols=78  Identities=19%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             cCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 009967          390 SGRFKEAKEFLYDLP-FDP---GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       390 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      .|+++.|+.+++++. ..|   +...+..+..++.+.|++++|+.++++ ...+|.++.....++.++.+.|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            355666666666542 122   333455566677777777777777777 556666666666778888888888888877


Q ss_pred             HHH
Q 009967          466 RRE  468 (521)
Q Consensus       466 ~~~  468 (521)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.96  E-value=0.0012  Score=60.66  Aligned_cols=136  Identities=19%  Similarity=0.151  Sum_probs=78.7

Q ss_pred             HHHHHHHhc-CCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-H
Q 009967          280 SLISFYAKC-GSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRINGIR-----PNGV-T  343 (521)
Q Consensus       280 ~l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~-~  343 (521)
                      .+...|... |+++.|.+.|++..+     ..    ..++..+...+.+.|++++|.++|++....-..     .+.. .
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            345556565 777777777776653     11    135666778888899999999999887664322     2222 2


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHchHhCC-CCCCh--hHHHHHHHHHHh--cCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 009967          344 LLGLLWACNHTGLVEKGYSYFSQAKLEDP-GMLKP--EHYACMVDLLSR--SGRFKEAKEFLYDLPFDPGIGFWKALL  416 (521)
Q Consensus       344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~l~  416 (521)
                      +...+-++...||...|...+++.....+ +..+.  .....|+.++-.  ...++++..-|+.+. +.|..--..|+
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~  275 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL  275 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence            33334456677888899988888764432 32332  245566777643  335777777777776 55555433333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.91  E-value=0.02  Score=53.59  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=68.0

Q ss_pred             hhhhcccCCChhHHHHHhccCCC-CCcccHHHHHHHH--HhcCChHHHHHHHHHhHHC--CCCC------------Chhh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD-LNVVSATTIIGRF--AKQHHYEEAIYLFSRMLLL--NIRP------------SEFT  110 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~--~~~p------------~~~~  110 (521)
                      ++.+|-- ++.+.....+..+.+ -....|-.+..++  -+.+.+.+|++.+..-...  +-.|            |-..
T Consensus        52 ilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l  130 (549)
T PF07079_consen   52 ILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFL  130 (549)
T ss_pred             HHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHH
Confidence            5555532 345555555444432 1245566666654  4678999999988877654  3222            1222


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHhCC----CCcHHHHHHHHHHHHc
Q 009967          111 FGSVIPSSTALEDLNLGKQLHAWATKVGL----QSNVFVGSAILDLYIK  155 (521)
Q Consensus       111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~  155 (521)
                      -+..+..+...|++.++..+++.+...=+    ..+..+|+.++-.+.+
T Consensus       131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr  179 (549)
T PF07079_consen  131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR  179 (549)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence            23455667899999999999998876543    3788899886655544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00018  Score=63.25  Aligned_cols=106  Identities=19%  Similarity=0.139  Sum_probs=76.9

Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELG  428 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A  428 (521)
                      ..+.+++++|...|.+++.-.+  -|+..|..=..+|.+.|.++.|++-.+. +.+.|... +|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            4567788888888888774443  3555677777888888888888877766 34455533 888888888888888888


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      ++.|+++++++|++......|-.+-.+.+.
T Consensus       169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  169 IEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            888888888888887666666555444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.89  E-value=0.00024  Score=59.94  Aligned_cols=93  Identities=12%  Similarity=0.041  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      .+..+...+...|++++|...+++.. ..|+    ...+..+...+...|++++|+..++++++..|.++..+..++.++
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45566666666777777777766532 1121    346677777788888888888888888888888888888888888


Q ss_pred             HhcCC--------------hHHHHHHHHHHHh
Q 009967          454 SVAGK--------------WDNVSNIRREMKE  471 (521)
Q Consensus       454 ~~~g~--------------~~~A~~~~~~m~~  471 (521)
                      ...|+              +++|.+++++..+
T Consensus       117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence            77766              4556666666544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.86  E-value=0.00034  Score=66.37  Aligned_cols=102  Identities=14%  Similarity=0.025  Sum_probs=81.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967          312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG  391 (521)
Q Consensus       312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  391 (521)
                      ....+...|++++|+..|+++.... +-+...+..+..++...|++++|...++++....+  .+...|..+..+|...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhC
Confidence            4556778899999999999999854 33556788888889999999999999999975554  45668889999999999


Q ss_pred             CHHHHHHHHhhC-CCCCCHHHHHHHH
Q 009967          392 RFKEAKEFLYDL-PFDPGIGFWKALL  416 (521)
Q Consensus       392 ~~~~A~~~~~~~-~~~~~~~~~~~l~  416 (521)
                      ++++|...|++. ...|+......++
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999884 3466655444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.86  E-value=0.0009  Score=61.18  Aligned_cols=135  Identities=17%  Similarity=0.175  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD  385 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  385 (521)
                      .+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+..+  .+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence            357777777777778888888888887543 2233344433333 3335667778888888876655  56677888888


Q ss_pred             HHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          386 LLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       386 ~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                      .+.+.|+.+.|..+|++.. .-|.    ...|...+..-...|+.+.+..+.+++.+..|++..
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            8888888888888888742 2222    248888888888888888888888888888775433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.84  E-value=0.0046  Score=50.49  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=98.7

Q ss_pred             CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC---HHHH
Q 009967          337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG---IGFW  412 (521)
Q Consensus       337 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~  412 (521)
                      +.|+...-..|..+....|+..+|...|++.. ...+-.|+.+...+.++....+++..|...++++. .+|+   +...
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            35666666677778888888888888888874 55566677788888888888888888888888742 2222   2234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      -.+...+...|.+..|+..|+.++...| ++.....++..+.++|+.++|..-+..+.+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4556678888899999999999988888 777777778888888888777665555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.81  E-value=4.9e-05  Score=55.27  Aligned_cols=80  Identities=24%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967          319 NGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK  397 (521)
Q Consensus       319 ~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  397 (521)
                      .|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..++++. ...+  .+......+..++.+.|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~~--~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLDP--SNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence            3455555555555554321 012223333455555555555555555441 1111  11222333345555555555555


Q ss_pred             HHHh
Q 009967          398 EFLY  401 (521)
Q Consensus       398 ~~~~  401 (521)
                      ++++
T Consensus        79 ~~l~   82 (84)
T PF12895_consen   79 KALE   82 (84)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.80  E-value=9.2e-05  Score=52.18  Aligned_cols=58  Identities=17%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      ..|...++++.|.+.+++++..+|+++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4678889999999999999999999999999999999999999999999999886543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.79  E-value=0.00067  Score=57.18  Aligned_cols=129  Identities=18%  Similarity=0.202  Sum_probs=85.3

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967          306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN--GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM  383 (521)
Q Consensus       306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  383 (521)
                      ...+..+...+...|++++|...|++..+....+.  ...+..+..++...|++++|...++++....+  .+...+..+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l  112 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHH
Confidence            34566677777788888888888888776432222  34677777788888888888888888864443  245566677


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967          384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG  457 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  457 (521)
                      ..+|...|+...+..-++..                  ...+++|.+.++++.+.+|++   +..++..+...|
T Consensus       113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~  165 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence            77777777766555332221                  123677888999988888866   344444444333

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.79  E-value=3.3e-05  Score=43.75  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=26.1

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHHCCC
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNI  104 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  104 (521)
                      ++|+.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888999999999999999988888764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.0012  Score=60.61  Aligned_cols=85  Identities=9%  Similarity=0.098  Sum_probs=50.7

Q ss_pred             HhcCCHHHHHHHHhhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967          388 SRSGRFKEAKEFLYDL-PF-----DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN  461 (521)
Q Consensus       388 ~~~g~~~~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  461 (521)
                      .+.|++..|.+.|.+. .+     +|+...|.....+..+.|+..+|+.-.+++..++|.-...|..-+.++...++|++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE  339 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666552 22     23333444455555666666666666666666666556666666666666666666


Q ss_pred             HHHHHHHHHhC
Q 009967          462 VSNIRREMKEK  472 (521)
Q Consensus       462 A~~~~~~m~~~  472 (521)
                      |.+-+++..+.
T Consensus       340 AV~d~~~a~q~  350 (486)
T KOG0550|consen  340 AVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHhh
Confidence            66666665443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.78  E-value=0.0016  Score=64.71  Aligned_cols=138  Identities=11%  Similarity=0.002  Sum_probs=68.9

Q ss_pred             CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhh--------ccHHHHHHHHHHchH
Q 009967          304 RNIVTWNAVICGYAQ--NG---RGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHT--------GLVEKGYSYFSQAKL  369 (521)
Q Consensus       304 ~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~  369 (521)
                      .+...|...+.+...  .+   +.+.|..+|++..+.  .|+-. .+..+..++...        .++..+.+..++...
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            455667766666433  22   366777777777764  35532 333332222111        122233333333221


Q ss_pred             hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       370 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      ......++..|.++.......|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            1112233345555555555556666666666552 2345555555555556666666666666666666666444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.77  E-value=0.00039  Score=58.38  Aligned_cols=94  Identities=9%  Similarity=-0.101  Sum_probs=73.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                      ....+..++..+...|++++|...+++.. ..|+    ..++..+...+...|++++|+..+++++...|.....+..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            34456777778888888888888887742 2222    347888888899999999999999999999998888888888


Q ss_pred             HHHH-------hcCChHHHHHHHHHH
Q 009967          451 NALS-------VAGKWDNVSNIRREM  469 (521)
Q Consensus       451 ~~~~-------~~g~~~~A~~~~~~m  469 (521)
                      ..+.       ..|++++|...+++.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            8888       888888666666553

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.77  E-value=0.005  Score=54.85  Aligned_cols=172  Identities=11%  Similarity=0.015  Sum_probs=100.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCC--CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTE--RNIV----TWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNH  353 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~  353 (521)
                      ....+.+.|++++|.+.|+.+..  |+..    ..-.++.++.+.+++++|...+++..+... .|+. -+...+.+.+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~  116 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhh
Confidence            44455667778888877777764  3322    123455667777888888888888776421 1222 22222222211


Q ss_pred             --h------------------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHH
Q 009967          354 --T------------------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK  413 (521)
Q Consensus       354 --~------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  413 (521)
                        .                  .....|...|+.++...|   +.             .-..+|..-+..+...- ...--
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP---~S-------------~ya~~A~~rl~~l~~~l-a~~e~  179 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP---NS-------------QYTTDATKRLVFLKDRL-AKYEL  179 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc---CC-------------hhHHHHHHHHHHHHHHH-HHHHH
Confidence              1                  112344455555554443   21             12223332222221000 00111


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          414 ALLGGCQIHSNVELGEFAARRILALDPE---DVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      .+...|.+.|.+..|+.-++.+++..|+   .+.++..+..+|...|..++|..+...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            3445588999999999999999998887   45677888999999999999999887654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.76  E-value=0.00045  Score=63.42  Aligned_cols=186  Identities=17%  Similarity=0.174  Sum_probs=107.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCH--HHHH
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRI----NGIRPNG--VTLL  345 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~--~~~~  345 (521)
                      ....|-..|++++|.+.|.+..+     .+    ...|.....+|.+. ++++|...+++...    .| .|+.  ..+.
T Consensus        41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~  118 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHH
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence            34445555555555555544432     11    12333444444333 67777777666543    33 2222  2556


Q ss_pred             HHHHHHHhh-ccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-----CCCHH-H
Q 009967          346 GLLWACNHT-GLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP---F-----DPGIG-F  411 (521)
Q Consensus       346 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~~~~~-~  411 (521)
                      .+...|... |+++.|.+.|+++..-......    ..++..+...+.+.|++++|.++|+++.   .     +.+.. .
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            666778787 8999999999887643221112    2356778889999999999999998742   1     11222 2


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHhc--CChHHHHHHHHH
Q 009967          412 WKALLGGCQIHSNVELGEFAARRILALDPE-----DVSSYVMLSNALSVA--GKWDNVSNIRRE  468 (521)
Q Consensus       412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~--g~~~~A~~~~~~  468 (521)
                      +-..+-.+...||...|...+++....+|.     ...+...++.++-..  ..+++|+.-|+.
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~  262 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS  262 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence            233344567789999999999999998875     234556667776543  445566655554

>PRK15331 chaperone protein SicA; Provisional

Probab=97.76  E-value=0.00062  Score=54.88  Aligned_cols=88  Identities=15%  Similarity=0.057  Sum_probs=75.7

Q ss_pred             HHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967          384 VDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN  461 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  461 (521)
                      ..-+...|++++|..+|+-+.  ..-+...|..|..++-..++++.|+..|..+..++++||..+...+.+|...|+.+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence            334557899999999998753  244566788888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 009967          462 VSNIRREMKE  471 (521)
Q Consensus       462 A~~~~~~m~~  471 (521)
                      |...|+...+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.74  E-value=0.0003  Score=52.22  Aligned_cols=79  Identities=18%  Similarity=0.074  Sum_probs=67.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHHCCC-CCChhhHHHHHHHHcCCC--------ChHHHHHHHHHHHHhCCCCcHHHHH
Q 009967           77 TTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALE--------DLNLGKQLHAWATKVGLQSNVFVGS  147 (521)
Q Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  147 (521)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-..+.+|+.|+..+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456677778999999999999999999 899999999999866443        2345788999999999999999999


Q ss_pred             HHHHHHHc
Q 009967          148 AILDLYIK  155 (521)
Q Consensus       148 ~l~~~~~~  155 (521)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99988764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00042  Score=51.37  Aligned_cols=90  Identities=19%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE  426 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~  426 (521)
                      ..+...|++++|...++.+....+  .+...+..+..++...|++++|.+.++... . +.+...+..+...+...|+++
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence            334444455555555544432221  122334444445555555555555554421 1 122234455555555556666


Q ss_pred             HHHHHHHHHHhcCC
Q 009967          427 LGEFAARRILALDP  440 (521)
Q Consensus       427 ~A~~~~~~~~~~~p  440 (521)
                      .|...+.++.+..|
T Consensus        86 ~a~~~~~~~~~~~~   99 (100)
T cd00189          86 EALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHccCC
Confidence            66666666655544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.72  E-value=0.00018  Score=49.33  Aligned_cols=61  Identities=21%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          383 MVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       383 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      +...+.+.|++++|.+.|+++. ..| +...+..+..++...|++++|...|+++++.+|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4567788899999999988853 345 455888888889999999999999999999999765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.009  Score=55.12  Aligned_cols=80  Identities=11%  Similarity=-0.090  Sum_probs=40.1

Q ss_pred             HcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHH
Q 009967          118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDAL  194 (521)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  194 (521)
                      +.+..++..|+..+....+.. +.+...|..-+..+...|++++|.--.++-..   .......-.-+++...++..+|.
T Consensus        59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~  137 (486)
T KOG0550|consen   59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE  137 (486)
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence            344456666666666666654 33455555555666666666666554433332   11222233333444444444444


Q ss_pred             HHHh
Q 009967          195 KLFQ  198 (521)
Q Consensus       195 ~~~~  198 (521)
                      +.++
T Consensus       138 ~~~~  141 (486)
T KOG0550|consen  138 EKLK  141 (486)
T ss_pred             HHhh
Confidence            4444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.00022  Score=62.72  Aligned_cols=86  Identities=16%  Similarity=0.233  Sum_probs=75.8

Q ss_pred             HHHHhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967          385 DLLSRSGRFKEAKEFLYD-LPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV  462 (521)
Q Consensus       385 ~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  462 (521)
                      .-+.+.+++.+|+..|.+ +.+.| |...|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            345678899999999987 44554 5667777888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 009967          463 SNIRREMK  470 (521)
Q Consensus       463 ~~~~~~m~  470 (521)
                      ++.|++..
T Consensus       169 ~~aykKaL  176 (304)
T KOG0553|consen  169 IEAYKKAL  176 (304)
T ss_pred             HHHHHhhh
Confidence            99998854

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.63  E-value=7.6e-05  Score=42.22  Aligned_cols=30  Identities=50%  Similarity=0.865  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGI  337 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~  337 (521)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            677888888888888888888888877653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.60  E-value=0.057  Score=49.68  Aligned_cols=273  Identities=15%  Similarity=0.122  Sum_probs=173.6

Q ss_pred             CCCHHHHHHHHhhCC---CCChhHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhhcchHHH
Q 009967          187 RERFEDALKLFQEMP---HRNVVSWNAMIG--GYSQTGRNEEAVNLFIEMLREGLVPNHST--LPCAIIAAANIAALGMG  259 (521)
Q Consensus       187 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a  259 (521)
                      .|+-..|.++-.+..   ..|....-.++.  +-.-.|+++.|.+-|+.|...   |....  +..+.-...+.|+.+.|
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA  173 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA  173 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence            344445544444332   234444433433  334467888888888877652   32221  22333334566777777


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChh--HHHHHHHHHH---HcCChHHHHHHH
Q 009967          260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIV--TWNAVICGYA---QNGRGEEAIEFF  329 (521)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~A~~~~  329 (521)
                      ..+-+.....-+. -.....+.+...+..|+|+.|+++++.-.+     +++.  .-..|+.+-.   -.-+...|...-
T Consensus       174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A  252 (531)
T COG3898         174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA  252 (531)
T ss_pred             HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            7777776665544 355677788888999999999999886553     4442  2222332221   123566666666


Q ss_pred             HHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH--HHH--HHHhhCC
Q 009967          330 ERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK--EAK--EFLYDLP  404 (521)
Q Consensus       330 ~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~--~~~~~~~  404 (521)
                      .+..+  +.||-. .-..-..++.+.|+..++-.+++.+- +..  |.+.++...+  +.+.|+..  ...  +-++.|+
T Consensus       253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW-K~e--PHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk  325 (531)
T COG3898         253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW-KAE--PHPDIALLYV--RARSGDTALDRLKRAKKLESLK  325 (531)
T ss_pred             HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH-hcC--CChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence            65554  456644 33344567899999999999999886 333  6665554333  34556532  222  1234454


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 009967          405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA-GKWDNVSNIRREMKEK  472 (521)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~  472 (521)
                       +.+..+...+..+-...|++..|..-.+.+.+..| ...+|..+++.-... |+-.+++..+-+.++.
T Consensus       326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence             44566777788888889999999999999999999 778888999887765 9999999999886654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.59  E-value=0.0015  Score=59.82  Aligned_cols=129  Identities=13%  Similarity=0.138  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 009967          342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR-SGRFKEAKEFLYDLP--FDPGIGFWKALLGG  418 (521)
Q Consensus       342 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~  418 (521)
                      .+|..++....+.+..+.|+.+|.++++...  .+..+|...+..-.+ .++.+.|.++|+...  ...+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            4678888888899999999999999973333  344556666666444 567777999999842  36677889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          419 CQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +...++.+.|..+|++++..-|.+.   .+|..++..-.+.|+.+.+..+.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999766544   58999999999999999999999888764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.56  E-value=0.02  Score=51.02  Aligned_cols=179  Identities=15%  Similarity=0.038  Sum_probs=97.1

Q ss_pred             cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh----HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHH
Q 009967           73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT----FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA  148 (521)
Q Consensus        73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (521)
                      ...+-.....+.+.|++++|++.|+.+...-  |+...    .-.+..++.+.++++.|...++...+.........+..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            3333345556677899999999999998753  33322    13455667889999999999999888642222222322


Q ss_pred             HHHHHHc--CC---------------CHH---HHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHH
Q 009967          149 ILDLYIK--LS---------------SIE---EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW  208 (521)
Q Consensus       149 l~~~~~~--~g---------------~~~---~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  208 (521)
                      .+.+.+.  .+               |..   .|...|+.+           +..|=...-..+|...+..+...-...-
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-----------i~~yP~S~ya~~A~~rl~~l~~~la~~e  178 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-----------VRGYPNSQYTTDATKRLVFLKDRLAKYE  178 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-----------HHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence            3333221  11               111   222333333           3333333334444444444432222222


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhhcchHHHHHHHH
Q 009967          209 NAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHSTLPCAIIAAANIAALGMGKSFHA  264 (521)
Q Consensus       209 ~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  264 (521)
                      ..+...|.+.|.+..|..-++.+.+.-  .+.....+..+..++...|..+.+..+..
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            345667888888888888888888752  22233334445555555555555554443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.56  E-value=0.0019  Score=48.11  Aligned_cols=81  Identities=12%  Similarity=-0.009  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhhc--------chHHHHHHHHHHHHcCCCCChhH
Q 009967          207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAANIA--------ALGMGKSFHACAVKFLGKLDVFV  277 (521)
Q Consensus       207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~  277 (521)
                      +-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..        ..-....+++.++..+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            445567777778999999999999999999 999999999999887764        23456778889999999999999


Q ss_pred             HHHHHHHHHh
Q 009967          278 GNSLISFYAK  287 (521)
Q Consensus       278 ~~~l~~~~~~  287 (521)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.53  E-value=0.0048  Score=49.64  Aligned_cols=90  Identities=10%  Similarity=-0.072  Sum_probs=42.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967          310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR  389 (521)
Q Consensus       310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (521)
                      -.+...+...|++++|.++|+-+.... +-+...|..|..++...|++++|...|.....-.+  .++..+-.+..++..
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c~L~  115 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHH
Confidence            333444445555555555555544421 11223444444445555555555555555542222  233444445555555


Q ss_pred             cCCHHHHHHHHhh
Q 009967          390 SGRFKEAKEFLYD  402 (521)
Q Consensus       390 ~g~~~~A~~~~~~  402 (521)
                      .|+.+.|.+.|+.
T Consensus       116 lG~~~~A~~aF~~  128 (157)
T PRK15363        116 CDNVCYAIKALKA  128 (157)
T ss_pred             cCCHHHHHHHHHH
Confidence            5555555554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.53  E-value=0.0072  Score=60.11  Aligned_cols=136  Identities=12%  Similarity=0.065  Sum_probs=98.1

Q ss_pred             CCCCCHHHHHHHHHHHHh-----hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHhh
Q 009967          336 GIRPNGVTLLGLLWACNH-----TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS--------GRFKEAKEFLYD  402 (521)
Q Consensus       336 ~~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~  402 (521)
                      +.+.+...|..++++...     .++.+.|..+|+++.+..+  -....|..+..++...        ++...+.+..++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            345677888888887432     2347799999999985554  2334555555544332        123444444444


Q ss_pred             C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          403 L---P-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       403 ~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      .   . ...+...+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++......
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            2   1 234556777777777788999999999999999999 688999999999999999999999999776543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.50  E-value=0.02  Score=46.85  Aligned_cols=134  Identities=13%  Similarity=0.107  Sum_probs=95.5

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967          304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM  383 (521)
Q Consensus       304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  383 (521)
                      |++..-..|..+....|++.+|...|++...--..-|......+.++....++...|...++.+.+..+-.-++.....+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            55556666778888888888999888887765445577778888888888888888888888886555444455556677


Q ss_pred             HHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          384 VDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      .+.|...|++.+|+..|+.. ...|+...-......+.++|+.+++..-+..+.+
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            88888888888888888764 3456666555555556677766666554444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.48  E-value=0.00046  Score=63.15  Aligned_cols=251  Identities=10%  Similarity=0.083  Sum_probs=139.9

Q ss_pred             HHHHhcCChHHHHHHHHHhHHCCCCCCh----hhHHHHHHHHcCCCChHHHHHHHHHHHH----hCCC-CcHHHHHHHHH
Q 009967           81 GRFAKQHHYEEAIYLFSRMLLLNIRPSE----FTFGSVIPSSTALEDLNLGKQLHAWATK----VGLQ-SNVFVGSAILD  151 (521)
Q Consensus        81 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~  151 (521)
                      .-+++.|+....+.+|+...+.| .-|.    ..|..+-++|.-.+++++|+++...=+.    .|-+ -.......|.+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            35788999999999999998876 3343    3466677777788888888887543211    1110 11222334455


Q ss_pred             HHHcCCCHHHHHHHhhcCCC---------CCchhHHHHHHHHHcCCC--------------------HHHHHHHHhhCCC
Q 009967          152 LYIKLSSIEEATRVFEDTHN---------PNVVSYTTMICGLLKRER--------------------FEDALKLFQEMPH  202 (521)
Q Consensus       152 ~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~  202 (521)
                      .+--.|.+++|.....+-..         .....+..+.+.|...|+                    ++.|.++|.+=.+
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            55556777777665433222         233445566666665543                    2333333332111


Q ss_pred             ---------CChhHHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCChhhHHHHHHHHHhhcchHHHHHHHHHHH-
Q 009967          203 ---------RNVVSWNAMIGGYSQTGRNEEAVNLFIEML----REGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAV-  267 (521)
Q Consensus       203 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-  267 (521)
                               ..-..|..|.+.|.-.|+++.|+..-+.-+    +-|- ......+..+..++.-.|+++.|.+.|+... 
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence                     112345666666666777777766543321    1121 1122345556666666777777766665533 


Q ss_pred             ---HcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 009967          268 ---KFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---------RNIVTWNAVICGYAQNGRGEEAIEFFERM  332 (521)
Q Consensus       268 ---~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m  332 (521)
                         +.|-. .......+|.+.|.-..++++|+.++.+-..         -....+-+|..+|...|..++|+.+.+.-
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence               22221 2334455566666666677777776665331         22345666777777777777776665543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.44  E-value=0.0011  Score=55.81  Aligned_cols=98  Identities=9%  Similarity=0.112  Sum_probs=80.7

Q ss_pred             HHHHhccC--CCCCcccHHHHHHHHHhc-----CChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC-----------
Q 009967           61 VHQVFDEV--PDLNVVSATTIIGRFAKQ-----HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE-----------  122 (521)
Q Consensus        61 A~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----------  122 (521)
                      -...|+..  ...+..+|..+++.+.+.     |..+-....+..|.+-|+.-|..+|+.|+..+=+..           
T Consensus        33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F  112 (228)
T PF06239_consen   33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF  112 (228)
T ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence            34556654  456788899999888754     778888889999999999999999999999865422           


Q ss_pred             -----ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967          123 -----DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS  158 (521)
Q Consensus       123 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  158 (521)
                           +.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus       113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                 345689999999999999999999999999987764

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.44  E-value=0.11  Score=48.86  Aligned_cols=87  Identities=6%  Similarity=0.033  Sum_probs=66.4

Q ss_pred             ccchHHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHhH
Q 009967           28 LIETQKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVPDLNV---VSATTIIGRFAKQHHYEEAIYLFSRML  100 (521)
Q Consensus        28 ~~~~~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~  100 (521)
                      +++.-++.+.+...+ -...    |++.|..+|..++.+++++.+..|-+   .+|..-+++-...++++....+|.++.
T Consensus        25 ~~D~lrLRerIkdNP-tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL  103 (660)
T COG5107          25 HGDELRLRERIKDNP-TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL  103 (660)
T ss_pred             CchHHHHHHHhhcCc-hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence            445557888887764 1221    99999999999999999999998754   478888888888899999999999998


Q ss_pred             HCCCCCChhhHHHHHHH
Q 009967          101 LLNIRPSEFTFGSVIPS  117 (521)
Q Consensus       101 ~~~~~p~~~~~~~ll~~  117 (521)
                      .....  ...|...+.-
T Consensus       104 ~k~l~--ldLW~lYl~Y  118 (660)
T COG5107         104 KKSLN--LDLWMLYLEY  118 (660)
T ss_pred             hhhcc--HhHHHHHHHH
Confidence            76544  4445444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.40  E-value=0.0017  Score=58.33  Aligned_cols=93  Identities=10%  Similarity=0.058  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHH
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDLP-FDPGI----GFWKALLGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSN  451 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~  451 (521)
                      |..-+..+.+.|++++|...|+.+. ..|+.    ..+..+...|...|++++|...|++++...|++   +.++..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            4444444445566777766666642 23332    345556666777777777777777777766653   455555677


Q ss_pred             HHHhcCChHHHHHHHHHHHhC
Q 009967          452 ALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       452 ~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ++...|++++|..+|+++++.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777776654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.40  E-value=0.00015  Score=41.76  Aligned_cols=34  Identities=18%  Similarity=0.427  Sum_probs=31.2

Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 009967          431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSN  464 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  464 (521)
                      .|+++++++|+++.+|..++.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3788999999999999999999999999999863

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.38  E-value=0.00052  Score=47.62  Aligned_cols=65  Identities=20%  Similarity=0.247  Sum_probs=45.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHS-NVELGEFAARRILALDP  440 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p  440 (521)
                      ++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3456677777777777777777777763 2344 3447777777777777 68888888888888776

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.36  E-value=0.01  Score=51.48  Aligned_cols=165  Identities=18%  Similarity=0.119  Sum_probs=92.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 009967          280 SLISFYAKCGSMEDSLLVFDKLTE--RNI----VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--TLLGLLWAC  351 (521)
Q Consensus       280 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~  351 (521)
                      .....+.+.|++.+|.+.|+.+..  |+.    ...-.++.++.+.|+++.|...++++.+.-  |+..  -+...+.+.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHH
Confidence            344556677888888888887764  322    245566777788888888888888877632  3321  111111111


Q ss_pred             H--h-----------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 009967          352 N--H-----------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG  418 (521)
Q Consensus       352 ~--~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~  418 (521)
                      +  .           .+...+|...|+.+....|                ......+|...+..+. ..-...--.++..
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP----------------~S~y~~~A~~~l~~l~-~~la~~e~~ia~~  150 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP----------------NSEYAEEAKKRLAELR-NRLAEHELYIARF  150 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T----------------TSTTHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHHHHHHHHHCc----------------CchHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            1  1           1223455555555554443                2222333333332221 0000011224556


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHH
Q 009967          419 CQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVS  463 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~  463 (521)
                      |.+.|.+..|...++.+++..|+++   .+...++.+|.+.|..+.|.
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            8899999999999999999999854   46777889999999988554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.36  E-value=0.00067  Score=62.10  Aligned_cols=250  Identities=16%  Similarity=0.103  Sum_probs=160.2

Q ss_pred             HcCCCChHHHHHHHHHHHHhCCCCcH----HHHHHHHHHHHcCCCHHHHHHHhhcCCC---------CCchhHHHHHHHH
Q 009967          118 STALEDLNLGKQLHAWATKVGLQSNV----FVGSAILDLYIKLSSIEEATRVFEDTHN---------PNVVSYTTMICGL  184 (521)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~  184 (521)
                      +++.|+.+..+.+|+..++.| ..|.    .+|..|.++|.-.+++++|.++-..-..         ....+...|.+.+
T Consensus        27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl  105 (639)
T KOG1130|consen   27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL  105 (639)
T ss_pred             HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence            688999999999999999988 3343    4577788888888999999987543221         2334455566666


Q ss_pred             HcCCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH--
Q 009967          185 LKRERFEDALKLFQEMPH---------RNVVSWNAMIGGYSQTGR--------------------NEEAVNLFIEMLR--  233 (521)
Q Consensus       185 ~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~--  233 (521)
                      --.|.+++|.-+-.+-..         ....++..+...|...|+                    ++.|.++|.+=++  
T Consensus       106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~  185 (639)
T KOG1130|consen  106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS  185 (639)
T ss_pred             hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            677888877655433221         123455556666665542                    2344444443221  


Q ss_pred             --CC-CCCChhhHHHHHHHHHhhcchHHHHHHHHHHH----HcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhcC---
Q 009967          234 --EG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAV----KFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLT---  302 (521)
Q Consensus       234 --~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---  302 (521)
                        .| --..-..|..+-..|.-.|+++.|....+.-+    +.|-. .....+..+.+++.-.|+++.|.+.|+...   
T Consensus       186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence              11 00112334445555566678888877665533    23322 123456778888999999999999888653   


Q ss_pred             ----CCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          303 ----ERN--IVTWNAVICGYAQNGRGEEAIEFFERMRI----N-GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       303 ----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                          ++.  ..+..+|...|.-..++++|+.++.+-..    . ...-....+-+|..++...|..++|..+.+...
T Consensus       266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                222  34666788888888889999888876322    1 112345578888889999999998888776653

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.34  E-value=0.003  Score=60.21  Aligned_cols=114  Identities=11%  Similarity=0.031  Sum_probs=51.2

Q ss_pred             CCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHH
Q 009967          237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWN  310 (521)
Q Consensus       237 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~  310 (521)
                      +.+...+..++..+....+++.+..++......  ....-..+..++++.|.+.|..+.+..+++.=..    ||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            334444444555555555555555554444433  1112223333445555555554444444444332    4444555


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      .+|..+.+.|++..|.++..+|...+...+..|+..-+.+
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~  182 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS  182 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            5555555555555555444444444433344443333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.34  E-value=0.00041  Score=47.97  Aligned_cols=49  Identities=22%  Similarity=0.381  Sum_probs=26.3

Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      ..|++++|.++|+++....+  -+...+..++.+|.+.|++++|.++++++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44556666666666554443  24444555555555555555555555554

...

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.32  E-value=0.006  Score=58.24  Aligned_cols=117  Identities=11%  Similarity=0.039  Sum_probs=89.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHH
Q 009967          203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS  280 (521)
Q Consensus       203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  280 (521)
                      -+......+++.+....+.+.+..++.+.+..  ....-+.|..++++.|...|..+.+..++..=..-|+-||..++|.
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~  143 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL  143 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence            35566777777777778888888888888765  2333445667889999999999999999998888999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHc
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQN  319 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~  319 (521)
                      |++.+.+.|++..|.++...|..    .+..|+..-+.+|.+-
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999988887763    3445555445444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.23  Score=49.86  Aligned_cols=353  Identities=14%  Similarity=0.104  Sum_probs=184.8

Q ss_pred             HHHhcCChHHHHHHHHHhH--------HCCCCCChhhHHH-----HHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHH
Q 009967           82 RFAKQHHYEEAIYLFSRML--------LLNIRPSEFTFGS-----VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA  148 (521)
Q Consensus        82 ~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (521)
                      ++.+..++++-..+-++..        .-|++.+..-|..     ++.-+...+.+..|+++-..+...-... ..+|..
T Consensus       398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~  476 (829)
T KOG2280|consen  398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE  476 (829)
T ss_pred             cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence            3445556666555544432        3477777776654     3445666778888888877765322122 566777


Q ss_pred             HHHHHHcCCC---HHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC--------ChhHHHHHHHHH
Q 009967          149 ILDLYIKLSS---IEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHR--------NVVSWNAMIGGY  215 (521)
Q Consensus       149 l~~~~~~~g~---~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~  215 (521)
                      ...-+.+..+   -+.+..+=+++..  ....+|..+.+.....|+.+-|..+++.=+..        +..-+...+.-+
T Consensus       477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka  556 (829)
T KOG2280|consen  477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA  556 (829)
T ss_pred             HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence            7777776532   3333444444444  45567888888888899999999988866542        233455566667


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967          216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL  295 (521)
Q Consensus       216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  295 (521)
                      ...|+.+-...++-.+.+.-   +...|...      ..+.-.|..+|.+..+..-.      ..+-+.|-+..+... .
T Consensus       557 ies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~-~  620 (829)
T KOG2280|consen  557 IESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQA-L  620 (829)
T ss_pred             HhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhh-h
Confidence            77788777777766665431   11111111      11222333334333332111      011122222222221 1


Q ss_pred             HHHhh-c------CCCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhccH
Q 009967          296 LVFDK-L------TERNIVTWNAVICGYAQNGR----------GEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLV  357 (521)
Q Consensus       296 ~~~~~-~------~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~  357 (521)
                      ..|.. -      .++-..........+.+...          ..+-+.+.+.+.. .|.....-+.+--+.-+...|+.
T Consensus       621 a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~  700 (829)
T KOG2280|consen  621 ASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQN  700 (829)
T ss_pred             hhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccch
Confidence            11111 0      01111112222222332221          1111222222222 22223333444445555666777


Q ss_pred             HHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      .+|.++-.+.+     .|+...|-.-+.+++..++|++-+++-+..+ .  +..|.-...+|.+.|+.++|..++-+.-.
T Consensus       701 k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-s--PIGy~PFVe~c~~~~n~~EA~KYiprv~~  772 (829)
T KOG2280|consen  701 KRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-S--PIGYLPFVEACLKQGNKDEAKKYIPRVGG  772 (829)
T ss_pred             HHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-C--CCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence            77777765542     2566677777777777777777777766654 1  34555666777777777777777655422


Q ss_pred             cCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          438 LDPEDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       438 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      .        .....+|.+.|++.+|.++--
T Consensus       773 l--------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  773 L--------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             h--------HHHHHHHHHhccHHHHHHHHH
Confidence            1        155666777777777766543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.31  E-value=0.00055  Score=42.38  Aligned_cols=42  Identities=31%  Similarity=0.436  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967          410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN  451 (521)
Q Consensus       410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  451 (521)
                      .+|..+..+|...|++++|++.|+++++.+|+|+.++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            357788899999999999999999999999999999888764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.30  E-value=0.0014  Score=61.81  Aligned_cols=65  Identities=11%  Similarity=-0.060  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS---SYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +...|+.+..+|...|++++|+..|+++++++|++..   +|+.++.+|...|+.++|+..+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456777777777777777777777777777776663   3777777777777777777777776664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.30  E-value=0.0064  Score=47.05  Aligned_cols=58  Identities=16%  Similarity=0.010  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPE---DVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      .+..+..++...|++++|+.++++.....|+   +......++.++...|+.++|+..+-.
T Consensus        40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE  100 (120)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3334444555555555555555555555554   344444455555555666655555443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.27  E-value=0.15  Score=50.10  Aligned_cols=97  Identities=14%  Similarity=0.063  Sum_probs=53.6

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG  127 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  127 (521)
                      -+..|...|.+++|.++---..  ...-|.-+...-..+=+++-|.+.|.+.....       |             =+.
T Consensus       562 ~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~-------~-------------L~l  619 (1081)
T KOG1538|consen  562 PMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVRDLR-------Y-------------LEL  619 (1081)
T ss_pred             cchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhccH-------H-------------HHH
Confidence            3455667777777764422111  12345555555555555666666555543211       1             122


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967          128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT  169 (521)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  169 (521)
                      ..-++++++.|-.|+...   +...++-.|++.+|-++|.+-
T Consensus       620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence            334566777776677654   345666778888887776544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.22  E-value=0.015  Score=45.08  Aligned_cols=91  Identities=24%  Similarity=0.265  Sum_probs=60.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHH
Q 009967          312 VICGYAQNGRGEEAIEFFERMRINGIRPNG--VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLS  388 (521)
Q Consensus       312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  388 (521)
                      ...++-..|+.++|+.+|++....|+....  ..+..+...+...|++++|..+++......+-.+ +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            445666778888888888888887765442  3566666777888888888888888765543211 2222333445667


Q ss_pred             hcCCHHHHHHHHhh
Q 009967          389 RSGRFKEAKEFLYD  402 (521)
Q Consensus       389 ~~g~~~~A~~~~~~  402 (521)
                      ..|+.++|++.+-.
T Consensus        87 ~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   87 NLGRPKEALEWLLE  100 (120)
T ss_pred             HCCCHHHHHHHHHH
Confidence            77888888776643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.19  E-value=0.013  Score=49.18  Aligned_cols=63  Identities=13%  Similarity=0.049  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN--HSTLPCAIIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      ..|..+...+...|++++|+..|+........|.  ..++..+..++...|+.+.|...++.+.+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555566666666666666666654321111  12333344444444444444444444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.12  E-value=0.23  Score=46.18  Aligned_cols=23  Identities=17%  Similarity=0.063  Sum_probs=15.6

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHH
Q 009967           75 SATTIIGRFAKQHHYEEAIYLFS   97 (521)
Q Consensus        75 ~~~~l~~~~~~~g~~~~A~~~~~   97 (521)
                      +|..+...-...|+.+-|..+++
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~   24 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLE   24 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHH
Confidence            45666666667777777777665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.12  E-value=0.088  Score=49.35  Aligned_cols=165  Identities=15%  Similarity=0.068  Sum_probs=103.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------NIVTWNAVICGYAQ---NGRGEEAIEFFERMRINGIRPNGVT  343 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~  343 (521)
                      +..+...++-.|-...+++..+++++.+...       ....-....-++.+   .|+.++|+.++..+....-.++..|
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3344445666788888999999999888763       12222334445556   7899999999998666556788888


Q ss_pred             HHHHHHHHHh---------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC-HH---HHHHHH---hh-----
Q 009967          344 LLGLLWACNH---------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR-FK---EAKEFL---YD-----  402 (521)
Q Consensus       344 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-----  402 (521)
                      +..+.+.|-.         ....++|...|.+.-   .+.|+...=-.++..+...|. .+   +..++-   ..     
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k  296 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK  296 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence            8888777632         234678888887654   222443221122223333332 11   222222   11     


Q ss_pred             --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          403 --LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       403 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                        .....+-..+..++.++.-.||.+.|.+.++++....|+
T Consensus       297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence              011345556777888888899999999999999988764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.09  E-value=0.13  Score=44.55  Aligned_cols=84  Identities=17%  Similarity=0.111  Sum_probs=43.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-hHHHHHHHHHH
Q 009967          310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLS  388 (521)
Q Consensus       310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~  388 (521)
                      ..++.-|=...-..+|...+..+...   .- ..-..+..-|.+.|.+..|..-++.+.+..+-.+.. .....++.+|.
T Consensus       114 ~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~  189 (203)
T PF13525_consen  114 EELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY  189 (203)
T ss_dssp             HHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            33444444444455555554444331   00 111224455777888888888888887666533322 24556677777


Q ss_pred             hcCCHHHHH
Q 009967          389 RSGRFKEAK  397 (521)
Q Consensus       389 ~~g~~~~A~  397 (521)
                      +.|..+.+.
T Consensus       190 ~l~~~~~a~  198 (203)
T PF13525_consen  190 KLGLKQAAD  198 (203)
T ss_dssp             HTT-HHHHH
T ss_pred             HhCChHHHH
Confidence            777766443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.08  E-value=0.012  Score=52.81  Aligned_cols=102  Identities=9%  Similarity=-0.001  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALL  416 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~  416 (521)
                      .|...+....+.|++++|...|+.+...++-.+- +..+..+..+|...|++++|...|+.+. ..|+    ...+..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            3444443345557777777777777655543221 3456667777777777777777777653 1222    33455556


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          417 GGCQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                      ..+...|+.+.|...|+++++..|++..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            6677788888888888888888886553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0057  Score=56.52  Aligned_cols=59  Identities=17%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +..+..++.+.+++..|++...+.++.+|+|..+++.-+.+|...|+++.|+..|+++.
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~  318 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL  318 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34444444555555555555555555555555555555555555555555555555544

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.07  E-value=0.35  Score=47.41  Aligned_cols=180  Identities=12%  Similarity=0.078  Sum_probs=122.5

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNGRGEEAIEFFERMRINGIR--PNGVTLLGLL  348 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll  348 (521)
                      +..+|...+......|+.+.+.-+|++..-|-   ...|-..+.-.-..|+.+-|..++....+-..+  |....+.+. 
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~-  374 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR-  374 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence            45677788888889999999999999987542   234555555555569999999888876664332  222222222 


Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChh-HHHHHHHHHHhcCCHHHHH---HHHhhCC-C--CCCHH--HHHHHHHH-
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAK---EFLYDLP-F--DPGIG--FWKALLGG-  418 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~--~~~~~--~~~~l~~~-  418 (521)
                       .+...|+++.|..+++.+.++.   |+.. .-..-+....+.|..+.+.   +++.... .  .+...  .+...... 
T Consensus       375 -f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~  450 (577)
T KOG1258|consen  375 -FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR  450 (577)
T ss_pred             -HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence             2456789999999999997555   4432 2333455667888888887   4444432 1  22222  22222222 


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      +...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus       451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            5667899999999999999999999999999998877654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.033  Score=48.29  Aligned_cols=132  Identities=11%  Similarity=-0.021  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh-----HHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-----HYACM  383 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l  383 (521)
                      .+.++..+.-.|.+.-....+++..+..-+.+..-...|++.-.+.||.+.|..+|++..+..+ ..+..     +....
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence            3444444445555666666666665543333444555555555666666666666665432211 12221     22222


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          384 VDLLSRSGRFKEAKEFLYDLPF--DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      ...|.-++++..|...+.++..  +.++...|.-+-+..-.|+...|++..+.+++..|.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            3334445555555555555432  223333333333344455666666666666665553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.01  E-value=0.0034  Score=44.02  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=50.4

Q ss_pred             HHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 009967          384 VDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM  448 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  448 (521)
                      ...|.+.+++++|.++++.+. ..| ++..|......+...|++++|.+.|+++++..|+++.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            356788888999988888753 344 45577778888899999999999999999999977665443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.00  E-value=0.0033  Score=51.35  Aligned_cols=68  Identities=25%  Similarity=0.314  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-----EKGMTRVP  478 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~  478 (521)
                      ....++..+...|++++|++.+++++..+|-+...|..++.+|.+.|+..+|.++|+++.     +.|+.|.+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~  136 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP  136 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence            455567778889999999999999999999999999999999999999999999999874     45777654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.99  E-value=0.3  Score=45.22  Aligned_cols=299  Identities=14%  Similarity=0.089  Sum_probs=163.9

Q ss_pred             ChHHHHHHHHHhHHCCCCCChhhHHHHHHHHc--CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH--HHcCCCHHHHH
Q 009967           88 HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST--ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL--YIKLSSIEEAT  163 (521)
Q Consensus        88 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~  163 (521)
                      .+..+.+.|..-+..      ..|..|-.++.  -.|+-..|.+.-.+..+. +..|....-.|+.+  -.-.|+++.|.
T Consensus        68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar  140 (531)
T COG3898          68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR  140 (531)
T ss_pred             CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence            344555555544331      22444444433  456777776665554322 34444444444443  33579999999


Q ss_pred             HHhhcCCC-CCchh--HHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 009967          164 RVFEDTHN-PNVVS--YTTMICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-L  236 (521)
Q Consensus       164 ~~~~~~~~-~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~  236 (521)
                      +-|+.|.. |....  ...|.-.--+.|+.+.|.++-+....  | -...+.+.+...+..|+++.|+++++.-+... +
T Consensus       141 ~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi  220 (531)
T COG3898         141 KKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI  220 (531)
T ss_pred             HHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence            99999876 43332  22233333467888888887776654  2 34677888899999999999999998876543 3


Q ss_pred             CCChhh--HHHHHHHHHh---hcchHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhH
Q 009967          237 VPNHST--LPCAIIAAAN---IAALGMGKSFHACAVKFLGKLDVF-VGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVT  308 (521)
Q Consensus       237 ~p~~~~--~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~  308 (521)
                      .++..-  -..++.+-..   ..+...|...-.+..+.  .|+.. ....-..++.+.|+..++-.+++.+-+  |.+..
T Consensus       221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i  298 (531)
T COG3898         221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI  298 (531)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence            344321  1222222211   12334444444444433  33322 222334567777777777777777754  33332


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL  386 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (521)
                      +..  ..+.+.|+  .+..-+++..+ ..++||. .+...+..+-...|++..|..--+...   ...|....|..|.+.
T Consensus       299 a~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI  371 (531)
T COG3898         299 ALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI  371 (531)
T ss_pred             HHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence            222  22233343  34444444332 1234443 355556666667777777666555543   233666677766666


Q ss_pred             HHhc-CCHHHHHHHHhh
Q 009967          387 LSRS-GRFKEAKEFLYD  402 (521)
Q Consensus       387 ~~~~-g~~~~A~~~~~~  402 (521)
                      -... |+-.++...+.+
T Consensus       372 eeAetGDqg~vR~wlAq  388 (531)
T COG3898         372 EEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             HhhccCchHHHHHHHHH
Confidence            5443 777777777665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.99  E-value=0.0019  Score=46.04  Aligned_cols=61  Identities=7%  Similarity=0.052  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILAL----DPE---DVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      +++.+...|...|++++|+..|++++++    +++   ...++..++.++...|++++|.+++++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5666777777778888888888777753    222   245778888888888888888888887643

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.17  Score=44.17  Aligned_cols=123  Identities=12%  Similarity=0.050  Sum_probs=50.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----H
Q 009967          279 NSLISFYAKCGSMEDSLLVFDKLTER----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL-----W  349 (521)
Q Consensus       279 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-----~  349 (521)
                      +.++.++.-.|++.-....+++..+.    ++.....+++.-.+.||.+.|...|++..+..-+.|..+++.++     .
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            33444444444554444444444432    23334444444445555555555555444322222222222222     1


Q ss_pred             HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      .+..++++..|...+.++....+  .++...|.-.-++.-.|+..+|.+.++.+
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~  312 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAM  312 (366)
T ss_pred             heecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            23334445555555544443332  22222232222333344555555555544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.014  Score=54.00  Aligned_cols=95  Identities=12%  Similarity=0.063  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      .++..|.-+|.+.+++..|++..++.. . ++|+...-.=..++...|+++.|+..|++++++.|.|..+-..++.+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            357788999999999999999888742 2 66788888888999999999999999999999999999998999888887


Q ss_pred             cCChHH-HHHHHHHHHhC
Q 009967          456 AGKWDN-VSNIRREMKEK  472 (521)
Q Consensus       456 ~g~~~~-A~~~~~~m~~~  472 (521)
                      ...+.+ ..++|..|-..
T Consensus       338 ~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            776655 48888888643

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.91  E-value=0.36  Score=44.88  Aligned_cols=109  Identities=9%  Similarity=0.055  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH  422 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~  422 (521)
                      +.+..+.-|...|+...|.++-.+.    .+ |+...|...+.+|+..++|++..++-..   +..+..|...+.+|...
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence            5555566677888888888776544    43 7888899999999999999999887664   23446788899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      |+..+|..+..++    |     +..-+..|.+.|++.+|.+.--+
T Consensus       251 ~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  251 GNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             CCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999888872    1     25667778899999998776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.80  E-value=0.014  Score=49.41  Aligned_cols=97  Identities=9%  Similarity=0.026  Sum_probs=68.8

Q ss_pred             HHHHhhC--CCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-------------
Q 009967          194 LKLFQEM--PHRNVVSWNAMIGGYSQ-----TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI-------------  253 (521)
Q Consensus       194 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------------  253 (521)
                      ...|+..  ...+-.+|..++..|.+     .|..+-....++.|.+-|+.-|..+|+.+++.+-+.             
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3444444  34566777777777654     366777777777888888888888888888776431             


Q ss_pred             ---cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 009967          254 ---AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS  290 (521)
Q Consensus       254 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  290 (521)
                         .+.+-+.+++++|...|+-||..++..+++.+++.+.
T Consensus       114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence               1346778888888888888888888888888866553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.80  E-value=0.14  Score=50.30  Aligned_cols=175  Identities=15%  Similarity=0.070  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967          208 WNAMIGGYSQTGRN--EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY  285 (521)
Q Consensus       208 ~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  285 (521)
                      ++..=.+|.+..+.  -+.+.-+++++++|-.|+...   +...|+-.|.+.+|-++|.+-   |..      +..+.+|
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmy  668 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMY  668 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHH
Confidence            34444555555443  344555667777777777543   334556667777766666532   211      2233344


Q ss_pred             HhcCCHHHHHHHHhhcCC--------------CChhHHHHHHHHHHHcCChHHHHHHHHH------HHHCCC---CCCHH
Q 009967          286 AKCGSMEDSLLVFDKLTE--------------RNIVTWNAVICGYAQNGRGEEAIEFFER------MRINGI---RPNGV  342 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~------m~~~~~---~p~~~  342 (521)
                      .....++.|.+++.....              .++.--.+....+...|+.++|..+.-+      +.+-+-   ..+..
T Consensus       669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere  748 (1081)
T KOG1538|consen  669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE  748 (1081)
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence            444444444443332211              1111111223333444555555443221      111111   12233


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP  404 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  404 (521)
                      +...+...+.+...+..|-++|.++-       |   ...+++.....++|++|..+-++.+
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~g-------D---~ksiVqlHve~~~W~eAFalAe~hP  800 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMG-------D---LKSLVQLHVETQRWDEAFALAEKHP  800 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhc-------c---HHHHhhheeecccchHhHhhhhhCc
Confidence            44444444455555666666666552       1   2345666667777777777776665

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.062  Score=47.96  Aligned_cols=104  Identities=17%  Similarity=0.059  Sum_probs=80.9

Q ss_pred             CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhC-CCCC-CHHHH
Q 009967          338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG---RFKEAKEFLYDL-PFDP-GIGFW  412 (521)
Q Consensus       338 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~  412 (521)
                      +-|...|..|..+|...|+.+.|...|.+.....|  +++..+..+..++....   ...++..+|+++ ..+| |+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            44677899999999999999999999999876676  66667777777765543   456788888884 3344 45566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          413 KALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      ..|...+...|++.+|...++.+++..|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            7777789999999999999999999887543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.67  E-value=0.6  Score=44.14  Aligned_cols=402  Identities=12%  Similarity=0.053  Sum_probs=211.8

Q ss_pred             HHhccCCC-C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCC
Q 009967           63 QVFDEVPD-L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ  140 (521)
Q Consensus        63 ~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  140 (521)
                      ++-+++.. | |..+|-.|+.-+..+|..++..+++++|..- .+--...|...+.+-....++..++.+|.+.+...+ 
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-  107 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-  107 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence            55566653 4 6789999999999999999999999999752 233455677777766667899999999999888654 


Q ss_pred             CcHHHHHHHHHHHHcCCC---------HHHHHHHhhcC--CCC-CchhHHHHHHH---HH------cCCCHHHHHHHHhh
Q 009967          141 SNVFVGSAILDLYIKLSS---------IEEATRVFEDT--HNP-NVVSYTTMICG---LL------KRERFEDALKLFQE  199 (521)
Q Consensus       141 ~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~--~~~-~~~~~~~li~~---~~------~~g~~~~a~~~~~~  199 (521)
                       +...|...+.--.+.+.         +-+|.++.-..  .+| ....|+..+.-   .-      ++.+++...+.+.+
T Consensus       108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r  186 (660)
T COG5107         108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR  186 (660)
T ss_pred             -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence             45566655554443331         12222221111  112 23334443322   22      23345556666666


Q ss_pred             CCC-C---------ChhHHHHHHHHHHh-------cCChHHHHHHHHHHHH--CCCCC----ChhhHHHHHHHH-H----
Q 009967          200 MPH-R---------NVVSWNAMIGGYSQ-------TGRNEEAVNLFIEMLR--EGLVP----NHSTLPCAIIAA-A----  251 (521)
Q Consensus       200 ~~~-~---------~~~~~~~l~~~~~~-------~~~~~~a~~~~~~m~~--~~~~p----~~~~~~~ll~~~-~----  251 (521)
                      +.. |         |-..|..=++....       ..-+-.|...+++...  .|...    +..+++-+-+.. +    
T Consensus       187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN  266 (660)
T COG5107         187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN  266 (660)
T ss_pred             HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence            654 1         22222222211111       1124456666666544  23222    112222211100 0    


Q ss_pred             ------hh-----c--chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 009967          252 ------NI-----A--ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ  318 (521)
Q Consensus       252 ------~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  318 (521)
                            ..     |  ......-++++....- .....+|----..+...++-+.|.....+..+..+..---+-..|..
T Consensus       267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~-~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel  345 (660)
T COG5107         267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYF-YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYEL  345 (660)
T ss_pred             HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhh
Confidence                  00     0  0001111111111110 01122222223334456777777777766554111100011111111


Q ss_pred             cCChHHHHHHHHHH-----------------------------HHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchH
Q 009967          319 NGRGEEAIEFFERM-----------------------------RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL  369 (521)
Q Consensus       319 ~~~~~~A~~~~~~m-----------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  369 (521)
                      .++-+.....|+..                             .-....--...|...+.+..+..-++.|+.+|-++. 
T Consensus       346 ~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r-  424 (660)
T COG5107         346 VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR-  424 (660)
T ss_pred             cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh-
Confidence            12222221111111                             000001112345666777677777888999998886 


Q ss_pred             hCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cch
Q 009967          370 EDP-GMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGF-WKALLGGCQIHSNVELGEFAARRILALDPE--DVS  444 (521)
Q Consensus       370 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~  444 (521)
                      +.| ..+++.++++++..++ .|+..-|-.+|+- |..-||... ....+..+...+|-..|..+|+..+..-.+  -..
T Consensus       425 k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~  503 (660)
T COG5107         425 KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKR  503 (660)
T ss_pred             ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhH
Confidence            555 5677778888888664 5777888888876 443455543 345566677788888899999877663222  256


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          445 SYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       445 ~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +|..++..-..-|+...+..+=++|.
T Consensus       504 iy~kmi~YEs~~G~lN~v~sLe~rf~  529 (660)
T COG5107         504 IYDKMIEYESMVGSLNNVYSLEERFR  529 (660)
T ss_pred             HHHHHHHHHHhhcchHHHHhHHHHHH
Confidence            78888888888888877766655553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.62  E-value=0.89  Score=45.45  Aligned_cols=202  Identities=11%  Similarity=0.078  Sum_probs=120.7

Q ss_pred             CCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh-CCCC--------cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCch
Q 009967          105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV-GLQS--------NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV  175 (521)
Q Consensus       105 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  175 (521)
                      .|.+..|..+.......-.++.|+..|-..... |++.        +...-.+-+.  +--|.+++|+++|-++...|. 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL-  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL-  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence            477888887777666656666666665544331 2211        1111111122  224778888888877765443 


Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009967          176 SYTTMICGLLKRERFEDALKLFQEMPHR-----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA  250 (521)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  250 (521)
                          -|..+.+.|++-...++++.-...     -..+|+.+...+.....|+.|.+.|..-..         ....+.++
T Consensus       766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl  832 (1189)
T KOG2041|consen  766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL  832 (1189)
T ss_pred             ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence                345566677777777777664431     125677777878777778888777755322         12244555


Q ss_pred             HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 009967          251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE  330 (521)
Q Consensus       251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~  330 (521)
                      .+..+++..+.+...+     +.+....-.+.+++...|--+.|.+.|-+-..|..     .+..|...+++.+|.++-+
T Consensus       833 y~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  833 YRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             HHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHH
Confidence            5555555544443332     23555666777888888888888887777665543     3455666777777777766


Q ss_pred             HH
Q 009967          331 RM  332 (521)
Q Consensus       331 ~m  332 (521)
                      +.
T Consensus       903 ~~  904 (1189)
T KOG2041|consen  903 RF  904 (1189)
T ss_pred             hc
Confidence            54

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.59  E-value=0.062  Score=42.55  Aligned_cols=89  Identities=15%  Similarity=0.062  Sum_probs=56.9

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHh
Q 009967          384 VDLLSRSGRFKEAKEFLYDLPF----DP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS---SYVMLSNALSV  455 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~  455 (521)
                      .....+.|++++|.+.|+.+..    .| ...+--.++.++...|++++|...+++.+++.|.++.   ++...+-++.+
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            3344466777777777776531    11 2234555677788888888888888888888887654   34444444555


Q ss_pred             cCC---------------hHHHHHHHHHHHhC
Q 009967          456 AGK---------------WDNVSNIRREMKEK  472 (521)
Q Consensus       456 ~g~---------------~~~A~~~~~~m~~~  472 (521)
                      ...               ..+|..-|+++++.
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            444               56777777776654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.49  E-value=0.53  Score=44.30  Aligned_cols=163  Identities=12%  Similarity=0.084  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHh---hccHHHHHHHHHHchHhCCCCCChhHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGI--RP-NGVTLLGLLWACNH---TGLVEKGYSYFSQAKLEDPGMLKPEHYAC  382 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  382 (521)
                      .-.++-+|....+++...++++.+.....  .+ ....-....-++.+   .|+.++|.+++..+. .....+++.+|..
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL  222 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHH
Confidence            33555678899999999999999987411  11 11122233344556   899999999999854 3334578888888


Q ss_pred             HHHHHHh---------cCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HHHH-hc---CC-
Q 009967          383 MVDLLSR---------SGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSN-VE---LGEFAA---RRIL-AL---DP-  440 (521)
Q Consensus       383 l~~~~~~---------~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~---~p-  440 (521)
                      +...|..         ....++|...|.+ ...+|+...=-.++..+...|. .+   +..++-   .... +.   .+ 
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            8877743         2247788888877 3445665432222222333332 22   222222   1111 11   12 


Q ss_pred             CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       441 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ++...+.+++.++.-.|++++|.+..++|.+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            25667778999999999999999999999865

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.057  Score=48.02  Aligned_cols=119  Identities=17%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA---LLGGCQIHSNVEL  427 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~  427 (521)
                      ....|+...|...|.......+  -+...-..++.+|...|+.+.|..++..++.+-....+..   -+..+.+..+..+
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4456666677776666654443  2234455666777777777777777777664333332222   1222222222222


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ... +++-...+|+|...-..++..+...|+.++|.+.+-.+.++
T Consensus       222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            222 22333456777777777777777777777777766666544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.36  E-value=0.047  Score=48.10  Aligned_cols=93  Identities=17%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHH
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE---DVSSYVMLS  450 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~  450 (521)
                      .|+.-+..| ..|++..|...|.... .-|+    ...+--|..++...|++++|...|..+.+-.|+   -|+.+..++
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            466555544 6677888888777642 1222    223444777888889999999999888886655   567788889


Q ss_pred             HHHHhcCChHHHHHHHHHHHhC
Q 009967          451 NALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       451 ~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .+..+.|+.++|..+|+++.++
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            9999999999999999988765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.35  E-value=0.062  Score=42.10  Aligned_cols=79  Identities=9%  Similarity=0.166  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMR---------------INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP  372 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~---------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  372 (521)
                      ++..++.++++.|+.+....+++..-               .....|+..+..+++.+|+..|++..|.++.+.....++
T Consensus         4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~   83 (126)
T PF12921_consen    4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP   83 (126)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence            44445555555555555554444321               123445666666666666666666666666666665566


Q ss_pred             CCCChhHHHHHHHH
Q 009967          373 GMLKPEHYACMVDL  386 (521)
Q Consensus       373 ~~~~~~~~~~l~~~  386 (521)
                      ++.+..+|..|+.-
T Consensus        84 I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   84 IPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCHHHHHHHHHH
Confidence            55555555555543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.30  E-value=1.6  Score=44.97  Aligned_cols=50  Identities=22%  Similarity=0.150  Sum_probs=23.3

Q ss_pred             HHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML  232 (521)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  232 (521)
                      ..+.+.+++....+++..- ..+...-.....+....|+.++|....+.+=
T Consensus       107 ~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW  156 (644)
T PRK11619        107 NELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELW  156 (644)
T ss_pred             HHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3344455555555522221 2233334444555555666555554444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=1.5  Score=44.41  Aligned_cols=312  Identities=16%  Similarity=0.067  Sum_probs=173.4

Q ss_pred             hCCCCcHHHHH-----HHHHHHHcCCCHHHHHHHhhcCCCCC---chhHHHHHHHHHcCC---CHHHHHHHHhhCCC--C
Q 009967          137 VGLQSNVFVGS-----AILDLYIKLSSIEEATRVFEDTHNPN---VVSYTTMICGLLKRE---RFEDALKLFQEMPH--R  203 (521)
Q Consensus       137 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g---~~~~a~~~~~~~~~--~  203 (521)
                      .|++.+..-|.     .+++-+...+.+..|+++-..+..|.   ...|.....-+.+..   +-+-+..+-+++..  -
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~  505 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT  505 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence            35555555443     34556666778888888887777654   445555555555542   23334444444444  3


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH
Q 009967          204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG----LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN  279 (521)
Q Consensus       204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  279 (521)
                      ...+|..+++.....|+.+-|..+++.=...+    +-.+..-+...+.-+...|+.+....++-.+...-   +.    
T Consensus       506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~----  578 (829)
T KOG2280|consen  506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR----  578 (829)
T ss_pred             CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH----
Confidence            45667777777777888888877764322111    01122234445555556666665555554443321   00    


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHH
Q 009967          280 SLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFE--RMR----INGIRPNGVTLLGLLWACN  352 (521)
Q Consensus       280 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~--~m~----~~~~~p~~~~~~~ll~~~~  352 (521)
                        .+.+.-..+...|..+|....+ .|..+   +-..|-+..+. ++...|.  ...    ..+..|+..   ....+|.
T Consensus       579 --s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a  649 (829)
T KOG2280|consen  579 --SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALK---TAANAFA  649 (829)
T ss_pred             --HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHH---HHHHHHh
Confidence              1111112233344444444332 11111   11112222222 2222221  100    112333333   2333343


Q ss_pred             hhcc----------HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009967          353 HTGL----------VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH  422 (521)
Q Consensus       353 ~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~  422 (521)
                      +...          ..+-..+.+.+..+.+..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..
T Consensus       650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~  728 (829)
T KOG2280|consen  650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADI  728 (829)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhh
Confidence            3322          223344444454455544444456666777788999999999999998 78888888888899999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +++++-+++.+..     .+|-.|.=...+|.+.|+.++|..++-+..
T Consensus       729 ~kweeLekfAksk-----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~  771 (829)
T KOG2280|consen  729 KKWEELEKFAKSK-----KSPIGYLPFVEACLKQGNKDEAKKYIPRVG  771 (829)
T ss_pred             hhHHHHHHHHhcc-----CCCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence            9998876665433     246778888999999999999999988753

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.25  E-value=0.4  Score=47.48  Aligned_cols=160  Identities=12%  Similarity=-0.013  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----hccHHHHHHHHHHchHhCCCCCChh
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRING-IRPNG-----VTLLGLLWACNH----TGLVEKGYSYFSQAKLEDPGMLKPE  378 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  378 (521)
                      +..++....-.||-+.+++.+.+..+.+ +.-..     -+|..++..++.    ..+.+.|.++++.+...+   |+..
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~  267 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA  267 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence            3445555555666677776666654422 21111     123333333322    456778888888887555   4544


Q ss_pred             HHH-HHHHHHHhcCCHHHHHHHHhhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH-H
Q 009967          379 HYA-CMVDLLSRSGRFKEAKEFLYDLPF------DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML-S  450 (521)
Q Consensus       379 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~  450 (521)
                      .|. .-.+.+...|++++|++.|++...      +-....+-.++..+....++++|...|.++.+.+.-+..+|..+ +
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            443 335666778888888888886431      12233555667778888999999999999998766555555544 4


Q ss_pred             HHHHhcCCh-------HHHHHHHHHHHh
Q 009967          451 NALSVAGKW-------DNVSNIRREMKE  471 (521)
Q Consensus       451 ~~~~~~g~~-------~~A~~~~~~m~~  471 (521)
                      -++...|+.       ++|.+++++...
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            456677888       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.21  E-value=0.044  Score=52.09  Aligned_cols=97  Identities=14%  Similarity=0.079  Sum_probs=63.0

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG----FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                      +...++.+..+|.+.|++++|+..|++ +...|+..    +|..+..+|...|+.++|++.++++++..+.   .|..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~  150 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL  150 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence            345678888888888888888888877 45566643    4888888888888888888888888886321   111111


Q ss_pred             H--HHHhcCChHHHHHHHHHHHhCCCc
Q 009967          451 N--ALSVAGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       451 ~--~~~~~g~~~~A~~~~~~m~~~g~~  475 (521)
                      .  .+....+..+..++++.+.+-|.+
T Consensus       151 ~DpdL~plR~~pef~eLlee~rk~G~~  177 (453)
T PLN03098        151 NDPDLAPFRASPEFKELQEEARKGGED  177 (453)
T ss_pred             hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence            1  111223334555666666655543

>PRK11906 transcriptional regulator; Provisional

Probab=96.21  E-value=0.12  Score=49.23  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=39.3

Q ss_pred             HHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIG-FWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      .+|.+.-++..+..+  .|+.....+..++.-.|+++.|...|++.. ..||.. +|......+.-.|+.++|.+.++++
T Consensus       321 ~~a~~~A~rAveld~--~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        321 QKALELLDYVSDITT--VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             HHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444444443332  344444444444444555555555555532 244322 4444444445555555555555555


Q ss_pred             HhcCCC
Q 009967          436 LALDPE  441 (521)
Q Consensus       436 ~~~~p~  441 (521)
                      ++++|.
T Consensus       399 lrLsP~  404 (458)
T PRK11906        399 LQLEPR  404 (458)
T ss_pred             hccCch
Confidence            555554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.15  E-value=0.14  Score=40.66  Aligned_cols=119  Identities=16%  Similarity=0.087  Sum_probs=71.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967          310 NAVICGYAQNGRGEEAIEFFERMRINGIRP---NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL  386 (521)
Q Consensus       310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (521)
                      -.-.....+.|++++|.+.|+.+...- +.   ....-..++.++.+.++++.|...+++.++.++..|+.. |.....+
T Consensus        14 y~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~g   91 (142)
T PF13512_consen   14 YQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRG   91 (142)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHH
Confidence            334445566788888888888877642 11   223566777778888888888888888877777666543 4444444


Q ss_pred             HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967          387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS  445 (521)
Q Consensus       387 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  445 (521)
                      ++.....+..+.-+-.  .+.|             .+....|...|+++++..|++..+
T Consensus        92 L~~~~~~~~~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   92 LSYYEQDEGSLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHhhhHHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCChhH
Confidence            4333222222111111  1111             123558889999999999977644

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=1.9  Score=44.22  Aligned_cols=173  Identities=14%  Similarity=0.107  Sum_probs=107.7

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNV---VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      -+..+.+..-++-|..+...-..+..   .......+.+.+.|++++|..-|-+-... +.|     ..++.-+....+.
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~I  413 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRI  413 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHH
Confidence            45555666666777766655332211   12233344566789999998888766532 222     2356666666677


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCch-hHHHHHHHHHcCCCHHHHHHHHhhCCCC
Q 009967          125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV-SYTTMICGLLKRERFEDALKLFQEMPHR  203 (521)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~  203 (521)
                      ..-..+++.+.+.|+ .+...-..|+++|.+.++.++-.+..+...+.... -....+..+.+.+-.++|..+-.+... 
T Consensus       414 knLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-  491 (933)
T KOG2114|consen  414 KNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-  491 (933)
T ss_pred             HHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence            777788888888884 34445567899999999999888888777631111 244555666666666666666555544 


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          204 NVVSWNAMIGGYSQTGRNEEAVNLFIEM  231 (521)
Q Consensus       204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m  231 (521)
                      .......+   +-..+++++|++++..+
T Consensus       492 he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  492 HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            33333333   33467788888887765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.14  E-value=0.019  Score=40.77  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-----FD---PG-IGFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      +++.+..+|.+.|++++|+..+++..     ..   |+ ..++..+...+...|++++|++.+++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45555666666666666666555421     11   22 235666666777777777777777776653

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.13  E-value=0.58  Score=41.07  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=44.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          415 LLGGCQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       415 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +...|.+.|.+..|..-++++++.-|+.+   ..+..+..+|...|-.++|...-+-+.
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34558899999999999999999877644   456677888999999999988665443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.77  Score=41.13  Aligned_cols=173  Identities=17%  Similarity=0.058  Sum_probs=112.3

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967          293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP  372 (521)
Q Consensus       293 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  372 (521)
                      ...+.+++...+....--.-.......|++.+|...|+...... +-+......+..+|...|+.+.|..++..+.....
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            34445555544422222223345667899999999999887753 22345667788889999999999999988742221


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHH
Q 009967          373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVML  449 (521)
Q Consensus       373 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l  449 (521)
                       .........-+..+.+.....+...+-++....| |...-..+...+...|+.+.|.+.+-.++..+  -.+...-..+
T Consensus       200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence             1111122233455555555555555555544456 66677778888999999999999988888854  3377777888


Q ss_pred             HHHHHhcCChHHHHHHHH
Q 009967          450 SNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       450 ~~~~~~~g~~~~A~~~~~  467 (521)
                      +..+...|..+.+...++
T Consensus       279 le~f~~~g~~Dp~~~~~R  296 (304)
T COG3118         279 LELFEAFGPADPLVLAYR  296 (304)
T ss_pred             HHHHHhcCCCCHHHHHHH
Confidence            888888776555443333

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.07  E-value=0.054  Score=47.55  Aligned_cols=111  Identities=9%  Similarity=0.063  Sum_probs=84.8

Q ss_pred             HHHHHhccCC--CCCcccHHHHHHHHHh-----cCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC----------
Q 009967           60 SVHQVFDEVP--DLNVVSATTIIGRFAK-----QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE----------  122 (521)
Q Consensus        60 ~A~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------  122 (521)
                      -.+..|...+  +.|..+|...+..+..     .+.++-....++.|.+.|+.-|..+|+.|++.+-+..          
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            3445566655  5677788888877754     3667777888999999999999999999999865533          


Q ss_pred             ------ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH-HHHHHHhhcCC
Q 009967          123 ------DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI-EEATRVFEDTH  170 (521)
Q Consensus       123 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~  170 (521)
                            +-+-+++++++|...|+.||..+-..|++++.+.|-. .+..++.-.|.
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                  2334789999999999999999999999999988753 34444444444

>PRK15331 chaperone protein SicA; Provisional

Probab=95.98  E-value=0.21  Score=40.62  Aligned_cols=91  Identities=15%  Similarity=0.049  Sum_probs=54.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK  394 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  394 (521)
                      -+...|++++|..+|+-+...+ .-+..-+..|..++...+++++|...|.....-..  -|+..+-....+|...|+.+
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHH
Confidence            3455677777777777665533 12344455666666667777777777766543322  23333444567777777777


Q ss_pred             HHHHHHhhCCCCCC
Q 009967          395 EAKEFLYDLPFDPG  408 (521)
Q Consensus       395 ~A~~~~~~~~~~~~  408 (521)
                      .|+..|......|.
T Consensus       123 ~A~~~f~~a~~~~~  136 (165)
T PRK15331        123 KARQCFELVNERTE  136 (165)
T ss_pred             HHHHHHHHHHhCcc
Confidence            77777766543443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.98  E-value=0.052  Score=44.20  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH-----hCCCCcHHHHH
Q 009967           76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-----VGLQSNVFVGS  147 (521)
Q Consensus        76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  147 (521)
                      ...++..+...|++++|..+.+.+.... +-|...|..+|.++...|+...|.++|+.+.+     .|++|+..+-.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            4445566677889999999988888765 55777888889999999999999888887743     47888776643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.89  E-value=1.7  Score=41.43  Aligned_cols=151  Identities=10%  Similarity=-0.100  Sum_probs=79.5

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhhccHHHHHHHHHHchHhC-CCCCChhH
Q 009967          304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP---NGVTLLGLLWACNHTGLVEKGYSYFSQAKLED-PGMLKPEH  379 (521)
Q Consensus       304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~  379 (521)
                      ....+|..++..+.+.|.++.|...+.++...+..+   .......-....-..|+.++|...++...... ....+...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            344577778888888888888888888877643111   22223333344556677788888877775311 11111111


Q ss_pred             HHHHHHHHHhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          380 YACMVDLLSRSGRFKEAKEF-LYDLPFDPGIGFWKALLGGCQIH------SNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      ...+...+..  ..+..... ........-...+..+..-+...      ++.+++...|+++.+..|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111000  00000000 00000000011233333333333      888999999999999999888888888887


Q ss_pred             HHhc
Q 009967          453 LSVA  456 (521)
Q Consensus       453 ~~~~  456 (521)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            7654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.87  E-value=0.077  Score=46.77  Aligned_cols=92  Identities=22%  Similarity=0.147  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-hHHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNG----VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACM  383 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l  383 (521)
                      |+.-+. +.+.|++..|..-|....+..  |+.    ..+..|..++...|+++.|..+|..+.+..+-.|.. +.+--|
T Consensus       145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            444433 334455777777777666642  221    244556666667777777777766666555544432 455555


Q ss_pred             HHHHHhcCCHHHHHHHHhhC
Q 009967          384 VDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~  403 (521)
                      ..+..+.|+.++|..+|+++
T Consensus       222 g~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            55555666665555555553

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.80  E-value=0.66  Score=35.98  Aligned_cols=141  Identities=9%  Similarity=0.003  Sum_probs=87.1

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                      ..-.|..++..++..+....   .+..-++.++--....-+-+-..+.++.+-+-+.+.+- .-...++.+|...|.   
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---   84 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---   84 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence            34568888888888887764   35556666665555555666666666665322222111 113344555555443   


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967          396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       396 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  475 (521)
                                  +....+..+......|+-+.-.+++..+...+..+|..+..++.+|.+.|+..++-+++++..+.|+.
T Consensus        85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence                        33344556677788899998889998888655559999999999999999999999999999999974

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.77  E-value=0.1  Score=40.16  Aligned_cols=119  Identities=11%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             HHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---chHHHHHHHHHHhcC
Q 009967          384 VDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALD-PED---VSSYVMLSNALSVAG  457 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g  457 (521)
                      ..++...|+.+.|++.|.+. .+ +.....||.-..++...|+.++|++-+.+++++. |..   ...|..-+..|...|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            34567788888888888773 22 4566788888888888999999999999988854 332   235677778888889


Q ss_pred             ChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 009967          458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI  516 (521)
Q Consensus       458 ~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  516 (521)
                      +.+.|+.=|+...+.|-+.-.. -.             -..+|=.+=....|+++.+++
T Consensus       130 ~dd~AR~DFe~AA~LGS~FAr~-QL-------------V~lNPYAAlCN~MLa~~f~ql  174 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGSKFARE-QL-------------VELNPYAALCNQMLADAFDQL  174 (175)
T ss_pred             chHHHHHhHHHHHHhCCHHHHH-HH-------------HhcChHHHHHHHHHHHHHHhc
Confidence            9999999898887777432110 00             034565666666666666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.68  E-value=0.036  Score=31.66  Aligned_cols=32  Identities=25%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPED  442 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  442 (521)
                      .|..+...+...|++++|++.|+++++++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45666777777788888888888888877754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.63  E-value=2.6  Score=41.68  Aligned_cols=136  Identities=10%  Similarity=0.065  Sum_probs=91.4

Q ss_pred             CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh-HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 009967           72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT-FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL  150 (521)
Q Consensus        72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  150 (521)
                      +-..|+.++.---.....+.+..++..+...  .|.... |......=.+.|..+.+.++|++.+. |++.+...|....
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~  120 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL  120 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence            4456777776655555667777777777753  355443 34444444577889999999998886 5677777777766


Q ss_pred             HHHH-cCCCHHHHHHHhhcCCC------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHH
Q 009967          151 DLYI-KLSSIEEATRVFEDTHN------PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA  210 (521)
Q Consensus       151 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  210 (521)
                      ..+. ..|+.+.....|+....      .+...|...|.--..++++.....+++++.+-....|+.
T Consensus       121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~  187 (577)
T KOG1258|consen  121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR  187 (577)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence            6554 46777777788877765      345567777777777777777777777777643333333

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.59  E-value=0.96  Score=36.38  Aligned_cols=128  Identities=19%  Similarity=0.246  Sum_probs=67.6

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLY  153 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  153 (521)
                      ..-..++..+...+.+......++.+...+ ..+...++.++..|++.+ .+.....+..      ..+......+++.|
T Consensus         8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c   79 (140)
T smart00299        8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC   79 (140)
T ss_pred             CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence            344566666666677777777777776665 355566666776666542 2333333331      12223333455666


Q ss_pred             HcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcC-CCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 009967          154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR-ERFEDALKLFQEMPHRNVVSWNAMIGGYS  216 (521)
Q Consensus       154 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~l~~~~~  216 (521)
                      .+.+-++++.-++.++..     +...+..+... ++.+.|.+++.+..  +...|..++..+.
T Consensus        80 ~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l  136 (140)
T smart00299       80 EKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL  136 (140)
T ss_pred             HHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence            666666666666655532     22223333333 55666666655532  4445555554443

>PRK11906 transcriptional regulator; Provisional

Probab=95.55  E-value=1.1  Score=43.04  Aligned_cols=67  Identities=4%  Similarity=-0.140  Sum_probs=54.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +.|......+..+....++++.|...|+++..++|+.+.+|...+..+.-+|+.++|.+.+++..+.
T Consensus       335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            4456666666666777778999999999999999988889999999888999999999888885443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.46  E-value=0.036  Score=31.78  Aligned_cols=32  Identities=22%  Similarity=0.130  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          410 GFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      .+|..+...+...|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35667777778888888888888888887774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.43  E-value=0.2  Score=39.22  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967          340 NGVTLLGLLWACNHTGLVEKGYSYFSQA  367 (521)
Q Consensus       340 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~  367 (521)
                      |..++..++.++++.|+.+....+++..
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~   28 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSV   28 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            4556777888888888888877777653

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.38  E-value=0.79  Score=44.79  Aligned_cols=156  Identities=15%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             HHHHhcCCHHHHHHHHh--hcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHH
Q 009967          283 SFYAKCGSMEDSLLVFD--KLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK  359 (521)
Q Consensus       283 ~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  359 (521)
                      +...-.++++.+.+...  ++. .-+....+.++.-+-+.|-.+.|+.+.++       |+ .-|    ....+.|+++.
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-------~~-~rF----eLAl~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-------PD-HRF----ELALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HH-HHH----HHHHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-------hH-HHh----HHHHhcCCHHH
Confidence            33445677777555554  222 11234467777777778888888776543       11 112    33456788888


Q ss_pred             HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 009967          360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD  439 (521)
Q Consensus       360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  439 (521)
                      |.++.+..       .++..|..|.+...+.|+++-|++.+++..      -+..|+-.|...|+.+.-.++.+.+...+
T Consensus       337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            87776544       366788888888888888888888888876      36667777777888777777776666544


Q ss_pred             CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          440 PEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       440 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      .     ++....++.-.|+.++..+++.+
T Consensus       404 ~-----~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  404 D-----INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            3     34444555556677776666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.37  E-value=0.68  Score=45.25  Aligned_cols=133  Identities=17%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             HHHHhcCChHHHHHHHH--HhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967           81 GRFAKQHHYEEAIYLFS--RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS  158 (521)
Q Consensus        81 ~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  158 (521)
                      ....-+|+++++.+..+  ++. ..+  +....+.+++.+.+.|..+.|+++-..         +.   .-.+...+.|+
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~  333 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN  333 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred             HHHHHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence            34455677777766664  222 112  244466666666777777777665332         11   12344556777


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009967          159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG  235 (521)
Q Consensus       159 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  235 (521)
                      ++.|.++.++..  +...|..|.....+.|+++-|++.|.+..+     |..|+-.|...|+.+.-.++.+.....|
T Consensus       334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            777777666654  444666666666677777777766666653     4455555666666666555555554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.35  E-value=1.8  Score=37.91  Aligned_cols=194  Identities=20%  Similarity=0.126  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009967          276 FVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW-  349 (521)
Q Consensus       276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-  349 (521)
                      .........+...+++..+...+.....     .....+......+...+++..+...+.........+. ........ 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence            3444455555555555555555554431     2233444455555555556666666666555322221 11111112 


Q ss_pred             HHHhhccHHHHHHHHHHchHhCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHhcCC
Q 009967          350 ACNHTGLVEKGYSYFSQAKLEDPG--MLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG--IGFWKALLGGCQIHSN  424 (521)
Q Consensus       350 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~  424 (521)
                      .+...|+++.+...+.+... ...  ......+......+...++.+.+...+.... ..++  ...+..+...+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            45566666666666666532 110  1122233333333555666666666666532 2222  4455556666666667


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      ++.|...+.......|.....+..+...+...|.++++...+.+...
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777777777776665455555555555555566666666666544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.27  E-value=1.2  Score=35.72  Aligned_cols=127  Identities=14%  Similarity=0.032  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS  388 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (521)
                      ...++..+...+.......+++.+...+ ..+....+.++..|++.+ .++...+++.    .   .+.......++.+.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~---~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN----K---SNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh----c---cccCCHHHHHHHHH
Confidence            3455666666677777777777777665 245556667777776543 3444444442    1   11222334566666


Q ss_pred             hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH-SNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       389 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      +.+.++++.-++.++..      +...+..+... ++++.|.+.+.+     +.++..|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence            77777777777776641      22222333333 677777777765     3366677777766543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.17  E-value=0.51  Score=43.30  Aligned_cols=163  Identities=17%  Similarity=0.125  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-----CCChh
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVKFLG-----KLDVF  276 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~  276 (521)
                      .+|..+.+++.+.-++.+++.+-+.-... |..|.   -....++..+....+.++++.+.|+.+.+...     -....
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            45555666666666666666655544332 22221   12223445555566667777766666554321     12456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC-------CChh------HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTE-------RNIV------TWNAVICGYAQNGRGEEAIEFFERMRI----NGIRP  339 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p  339 (521)
                      ++..|...|.+..|+++|.-+..+..+       .|..      ....|.-++...|....|.+.-++..+    .|-.|
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra  243 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA  243 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence            778888888888888887766555432       2322      222344556677877777777776543    34222


Q ss_pred             CH-HHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          340 NG-VTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       340 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                      .. .....+.+.|...|+.|.|+.-|+.+.
T Consensus       244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  244 LQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            21 244566677888888888887777653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.09  E-value=0.064  Score=32.99  Aligned_cols=30  Identities=17%  Similarity=0.225  Sum_probs=27.3

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      |.++..++.+|.+.|++++|++++++.++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999998865

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.07  E-value=1.5  Score=40.35  Aligned_cols=122  Identities=7%  Similarity=0.013  Sum_probs=54.1

Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhh-------CCCCCCHHHHH--
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGML----KPEHYACMVDLLSRSGRFKEAKEFLYD-------LPFDPGIGFWK--  413 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~--  413 (521)
                      +..++...+.++++.+.|+.+..-..-..    ...++-.|...|.+..++++|.-+..+       ..++.-..-|.  
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            44445555555555555555432111111    122455555555555555554443332       11111111121  


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          414 ---ALLGGCQIHSNVELGEFAARRILALD------PEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       414 ---~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                         .+.-++...|....|.+..+++.++.      |-.......+++.|...|+.+.|+.-|++
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence               22233455555555555555554421      11223344455556666666655555544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.01  E-value=0.15  Score=45.71  Aligned_cols=61  Identities=21%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      ++..++..+...|+++.+...+++++..+|-+...|..++.+|.+.|+...|+..|+++.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            5566677777788888888888888888888888888888888888888888888887754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=3.2  Score=42.74  Aligned_cols=177  Identities=15%  Similarity=0.054  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 009967          176 SYTTMICGLLKRERFEDALKLFQEMPHRNV---VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN  252 (521)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  252 (521)
                      ....-+..+.+...++-|+.+-+.-..+..   .........+.+.|++++|...|-+-... +.|.     .++.-+..
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd  409 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD  409 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence            345566777777888888887776554322   22334455667889999999888766442 2332     34455566


Q ss_pred             hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI-VTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      ......-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+...+-.. .-....+..+.+.+-.++|..+-.+
T Consensus       410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k  488 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK  488 (933)
T ss_pred             HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence            66677777888888888877 667778899999999999999888887763211 1245566777777777777766655


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967          332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA  367 (521)
Q Consensus       332 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  367 (521)
                      ...     +......+   +...+++++|.++++.+
T Consensus       489 ~~~-----he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            432     23333333   45678999999999876

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.94  E-value=0.098  Score=40.22  Aligned_cols=57  Identities=18%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      .+.+..|+.+.|++.|.+.+.+-|.++++|+.-+.++.-+|+.++|+.=+++..+..
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            346788999999999999999999999999999999999999999999999987653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=2.4  Score=36.95  Aligned_cols=141  Identities=17%  Similarity=0.156  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHh----CCCCCChhHHH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE----DPGMLKPEHYA  381 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~  381 (521)
                      .|+.-...|..+|.++-|-..+++.-+  .++.|+                  +|.++|++...-    .....-...+.
T Consensus        93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~g  154 (308)
T KOG1585|consen   93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYG  154 (308)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            445556667777777666666655433  123444                  333333332110    11111122345


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHH
Q 009967          382 CMVDLLSRSGRFKEAKEFLYDLP-------FDPGI-GFWKALLGGCQIHSNVELGEFAARRILA----LDPEDVSSYVML  449 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l  449 (521)
                      .+.+.|.+..++++|-..+.+-.       .-++. ..+-..+-.+....|+..|...++...+    .+|++..+...|
T Consensus       155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL  234 (308)
T KOG1585|consen  155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL  234 (308)
T ss_pred             HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence            55667777778877776665532       12332 2455556666667789999999888666    346677788888


Q ss_pred             HHHHHhcCChHHHHHHHH
Q 009967          450 SNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       450 ~~~~~~~g~~~~A~~~~~  467 (521)
                      +.+| ..|+.+++..++.
T Consensus       235 L~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  235 LTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHh-ccCCHHHHHHHHc
Confidence            8776 4567777766554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.77  E-value=6  Score=41.01  Aligned_cols=122  Identities=10%  Similarity=0.036  Sum_probs=73.3

Q ss_pred             hhhhcccCCChhHHHHHhccCCC----CCcccHHHHHH-----HHHhcCChHHHHHHHHHhHHCC---CCCChhhHHHHH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD----LNVVSATTIIG-----RFAKQHHYEEAIYLFSRMLLLN---IRPSEFTFGSVI  115 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll  115 (521)
                      +++.+.+.+... |....++..+    .....|....+     .+...+++..|.+.++.+...-   ..|....+..++
T Consensus       106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~  184 (608)
T PF10345_consen  106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS  184 (608)
T ss_pred             HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence            677777777666 8888776432    12223333222     2333479999999998887532   234455555555


Q ss_pred             HHHc--CCCChHHHHHHHHHHHHhCC---------CCcHHHHHHHHHHHH--cCCCHHHHHHHhhcCC
Q 009967          116 PSST--ALEDLNLGKQLHAWATKVGL---------QSNVFVGSAILDLYI--KLSSIEEATRVFEDTH  170 (521)
Q Consensus       116 ~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~  170 (521)
                      .+..  ..+..+.+.+.++.+.....         .|...++..+++.++  ..|+++.+...++++.
T Consensus       185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5543  45666777777776644221         345667777776544  5788777777776664

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.76  E-value=3.2  Score=40.26  Aligned_cols=99  Identities=13%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCC--HHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF--DPG--IGFWKALLGG  418 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~  418 (521)
                      +=..+..++-+.|+.++|.+.++++.+..+......+...|+.++...+.+.++..++.+-..  -|.  ...|+..+-.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            334566667788999999999999976666444556778899999999999999999887541  233  2355554433


Q ss_pred             HHhcCC---------------HHHHHHHHHHHHhcCCC
Q 009967          419 CQIHSN---------------VELGEFAARRILALDPE  441 (521)
Q Consensus       419 ~~~~g~---------------~~~A~~~~~~~~~~~p~  441 (521)
                      ....+|               -..|.+.+.++++.+|-
T Consensus       341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence            332232               23466788888887763

The molecular function of this protein is uncertain.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=4  Score=43.13  Aligned_cols=54  Identities=19%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCcc-----cHHHHHH---HHHhcCChHHHHHHHHHhHH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNVV-----SATTIIG---RFAKQHHYEEAIYLFSRMLL  101 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~l~~---~~~~~g~~~~A~~~~~~m~~  101 (521)
                      -+..+....+|++|..+-+....|+..     .+.....   -+..+|++++|.+.|+++..
T Consensus       313 qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~  374 (877)
T KOG2063|consen  313 QIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI  374 (877)
T ss_pred             HHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence            344555566699999888877655543     2222222   25678999999999999864

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.52  E-value=3  Score=36.37  Aligned_cols=54  Identities=19%  Similarity=0.076  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhhccHHHHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGI---RPNGVTLLGLLWACNHTGLVEKGYSY  363 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~  363 (521)
                      |-..|-.+....++..|...++.--..+-   .-+..+...|+.+| ..|+.+++..+
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv  249 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV  249 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence            33444444445556666665555332111   11233455555544 23444444443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.47  E-value=0.37  Score=39.27  Aligned_cols=129  Identities=9%  Similarity=-0.012  Sum_probs=70.9

Q ss_pred             cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh-HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHH-HHHHHH
Q 009967           73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT-FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF-VGSAIL  150 (521)
Q Consensus        73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~  150 (521)
                      ...|..-+. +++.+..++|+.-|..+.+.|...-+.. .........+.|+...|...|.++-...-.|... -...|=
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            344544444 4566677777777777776653322111 1122223556777777777777776643333322 111111


Q ss_pred             --HHHHcCCCHHHHHHHhhcCCCCCc----hhHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 009967          151 --DLYIKLSSIEEATRVFEDTHNPNV----VSYTTMICGLLKRERFEDALKLFQEMPH  202 (521)
Q Consensus       151 --~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~  202 (521)
                        -.+...|.++......+-+..+..    ..-..|.-+-.+.|++.+|.+.|..+..
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence              134456777777776666654221    1233455555677778888777777665

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.43  E-value=3.3  Score=36.53  Aligned_cols=177  Identities=15%  Similarity=-0.018  Sum_probs=90.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHHCC--CCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967           78 TIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK  155 (521)
Q Consensus        78 ~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  155 (521)
                      .=+..-.+.|++++|.+.|+.+..+-  -+-...+...++.++.+.++++.|+...++..+.-.......|..-|.+++.
T Consensus        39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~  118 (254)
T COG4105          39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY  118 (254)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence            33444577889999999999888652  1223445566667778888999998888888775422223334444444442


Q ss_pred             -------CCCHHHHHHHhhcCCC-----CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 009967          156 -------LSSIEEATRVFEDTHN-----PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE  223 (521)
Q Consensus       156 -------~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  223 (521)
                             ..|...+...|..+.+     ||+.-             ...|......+...=...=..+.+.|.+.|.+..
T Consensus       119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             hccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence                   1222333333322221     22210             0111111111100000011234566778888888


Q ss_pred             HHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967          224 AVNLFIEMLREGLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       224 a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      |..-++.|.+. .+-+   ...+..+..+|...|..+.|...-.-+..
T Consensus       186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            88888888775 1111   12334445555555655555554444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.43  E-value=1.6  Score=39.74  Aligned_cols=146  Identities=9%  Similarity=-0.081  Sum_probs=59.6

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHH----HHHHHHHhcCCHHH
Q 009967          320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA----CMVDLLSRSGRFKE  395 (521)
Q Consensus       320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~  395 (521)
                      |++.+|-..|+++.+. .+-|...+...-.+|...|+.+.-...++++.-.-  .++...|.    .+.-++..+|-+++
T Consensus       117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccchh
Confidence            4444444444444442 22233344444444555555554444444443111  12322222    22233344555555


Q ss_pred             HHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          396 AKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       396 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      |++.-++. .+ +.|..+..++...+-..|+..++.++..+-...-..    -..-|-..+-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            55544442 11 223334444444444455555555544433221110    111233344444444555555555543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=1  Score=40.89  Aligned_cols=145  Identities=8%  Similarity=-0.063  Sum_probs=79.0

Q ss_pred             hcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHcCCCHHH
Q 009967           85 KQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV---GLQSNVFVGSAILDLYIKLSSIEE  161 (521)
Q Consensus        85 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~  161 (521)
                      -+|++.+|-..++++.+. .|.|...+...=.+|.-.|+...-...++.+.-.   ++|-.........-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            346666666666666654 3555555665566666666666666666655543   111122223333344556677777


Q ss_pred             HHHHhhcCCCC---CchhHHHHHHHHHcCCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          162 ATRVFEDTHNP---NVVSYTTMICGLLKRERFEDALKLFQEMPHR-------NVVSWNAMIGGYSQTGRNEEAVNLFIE  230 (521)
Q Consensus       162 a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~  230 (521)
                      |++.-++..+.   |.-.-.+....+-..|++.++.++..+-...       -...|-...-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            77776666652   2223334555555667777777666665541       112233333444555667777777654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.33  E-value=2.9  Score=35.67  Aligned_cols=159  Identities=15%  Similarity=0.083  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD  385 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  385 (521)
                      .+||-+.--+...|+++.|.+.|+...+..  |.- .+...-.-++.-.|+++.|.+-+...-+..+-.|-...|-.+..
T Consensus       100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E  177 (297)
T COG4785         100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE  177 (297)
T ss_pred             HHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            456666555666666666666666655532  221 12211111233445666665544444333332232222222221


Q ss_pred             HHHhcCCHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHhcC
Q 009967          386 LLSRSGRFKEAKEFLY-DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED-------VSSYVMLSNALSVAG  457 (521)
Q Consensus       386 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g  457 (521)
                         +.-++.+|..-+. +.. +.+..-|...+-.+.- |+.. ...+++++.+-..++       ..+|..++.-+...|
T Consensus       178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G  251 (297)
T COG4785         178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG  251 (297)
T ss_pred             ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence               2224445543332 222 2333333332222211 1111 122333333322221       246777777777777


Q ss_pred             ChHHHHHHHHHHHhCC
Q 009967          458 KWDNVSNIRREMKEKG  473 (521)
Q Consensus       458 ~~~~A~~~~~~m~~~g  473 (521)
                      +.++|..+|+-.+..+
T Consensus       252 ~~~~A~~LfKLaiann  267 (297)
T COG4785         252 DLDEATALFKLAVANN  267 (297)
T ss_pred             cHHHHHHHHHHHHHHh
Confidence            7777777777655443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.24  E-value=0.49  Score=39.60  Aligned_cols=57  Identities=11%  Similarity=0.052  Sum_probs=37.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ..+..+.+.++.|+.-..++++++|....++..-+.+|.+..++++|++=|+++.+.
T Consensus       141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            344556666777777777777777766666666666777777777777777666543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.14  E-value=1.9  Score=36.13  Aligned_cols=90  Identities=10%  Similarity=-0.074  Sum_probs=46.8

Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCC
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF--WKALLGGCQIHSN  424 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~  424 (521)
                      ..+...+++++|...++... ..+...+.  ..--.|.+.....|.+|+|+..++... .++-..  ...-...+...|+
T Consensus        97 k~~ve~~~~d~A~aqL~~~l-~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~  174 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQAL-AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHH-ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCc
Confidence            34556667777776666553 22211111  112234555666666666666666654 332222  2222334666666


Q ss_pred             HHHHHHHHHHHHhcCC
Q 009967          425 VELGEFAARRILALDP  440 (521)
Q Consensus       425 ~~~A~~~~~~~~~~~p  440 (521)
                      -++|+..|+++++.++
T Consensus       175 k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         175 KQEARAAYEKALESDA  190 (207)
T ss_pred             hHHHHHHHHHHHHccC
Confidence            6666666666666553

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.98  E-value=2.9  Score=34.48  Aligned_cols=129  Identities=11%  Similarity=0.089  Sum_probs=57.3

Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCC--CHHHHHHHHhhCCCCChhHHH
Q 009967          132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE--RFEDALKLFQEMPHRNVVSWN  209 (521)
Q Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~  209 (521)
                      ..+.+.+++|+...+..+++.+.+.|++.....++.--.=+|.......+-.+....  -.+-+.+++.++.    ..+.
T Consensus        18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~   93 (167)
T PF07035_consen   18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYE   93 (167)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHH
Confidence            333444555555555555555555555554444443332233222222221111110  1223334444433    2344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967          210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      .++..+...|++-+|+++.+.....    +......++.+..+.+|...-..+++...+
T Consensus        94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5556666777777777766554221    111223445555555555544444444444

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.96  E-value=0.56  Score=41.50  Aligned_cols=99  Identities=14%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             HHHHHhhcC--CCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-----------
Q 009967          294 SLLVFDKLT--ERNIVTWNAVICGYAQ-----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG-----------  355 (521)
Q Consensus       294 A~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----------  355 (521)
                      .+..|..+.  +.|-.+|-..+..+..     .+..+=...-++.|.+.|+.-|..+|..|+..+-+..           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            345555555  4666677777776654     3566777777888889999999999999988764432           


Q ss_pred             -----cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCH
Q 009967          356 -----LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF  393 (521)
Q Consensus       356 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  393 (521)
                           +-+-+..++++| +.+|+.||..+-..|+.++.+.|..
T Consensus       133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence                 235688999999 5999999999999999999887753

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.92  E-value=1.5  Score=42.42  Aligned_cols=57  Identities=14%  Similarity=0.070  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYDLP-FDPG---IGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      ..|..+..+.|+.++|.+.++++. ..|.   ......|+.++...+.+.++..++.+--+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            345555556666666666665542 1221   22445555566666666666666665433

The molecular function of this protein is uncertain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.78  E-value=12  Score=40.54  Aligned_cols=152  Identities=16%  Similarity=0.175  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HhhcchHHHHHHH
Q 009967          188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA----ANIAALGMGKSFH  263 (521)
Q Consensus       188 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~  263 (521)
                      ++++.|+..+.++.   ...|.-.++.--+.|.+.+|+.+|        .|+...+..+..+|    ...+.++.|--.|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y  962 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY  962 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            34444554444443   112222233333444444444443        46666655555444    4556666666666


Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009967          264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW---NAVICGYAQNGRGEEAIEFFERMRINGIRPN  340 (521)
Q Consensus       264 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~  340 (521)
                      +..-+.         .-.+.+|..+|+|.+|..+-.++..+-....   ..|+.-+...+++-+|-++..+....   |.
T Consensus       963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~ 1030 (1265)
T KOG1920|consen  963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE 1030 (1265)
T ss_pred             HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH
Confidence            544321         3356778888888888888888876433333   67778888888888888888776542   21


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967          341 GVTLLGLLWACNHTGLVEKGYSYFSQA  367 (521)
Q Consensus       341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~  367 (521)
                           ..+..+++...+++|.++....
T Consensus      1031 -----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1031 -----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             -----HHHHHHhhHhHHHHHHHHHHhc
Confidence                 1233455666667766665543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.68  E-value=0.16  Score=29.59  Aligned_cols=26  Identities=8%  Similarity=0.123  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          445 SYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       445 ~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +|..|+.+|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46788888888888888888888854

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.68  E-value=2.4  Score=34.74  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh-HHHHH--
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACM--  383 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--  383 (521)
                      .|..-++ +.+.+..++|+.-|..+.+.|...-.. ............|+...|...|.++- .....|.+. -...|  
T Consensus        61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia-~dt~~P~~~rd~ARlra  138 (221)
T COG4649          61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA-ADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh-ccCCCcchhhHHHHHHH
Confidence            3443333 456677788888888887765432221 11222233566777888888888774 333222221 11111  


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          384 VDLLSRSGRFKEAKEFLYDLPFDPG---IGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      ...+...|.+++...-++.+..+.+   ...-..|.-+-.+.|++..|...|..+..
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            2234566777777666666543222   22334455555566777777777766655

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.67  E-value=3.2  Score=34.21  Aligned_cols=133  Identities=9%  Similarity=0.002  Sum_probs=84.1

Q ss_pred             HHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCC--CHHHHHHHhhcCCC
Q 009967           94 YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS--SIEEATRVFEDTHN  171 (521)
Q Consensus        94 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~  171 (521)
                      +.++.+.+.+++|+...+..++..+.+.|++...    .++++.++-+|.......+-.+....  -..-|...+.++. 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-   89 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-   89 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence            4445556678888888999999999888876554    44455565555544443332222211  1334445555543 


Q ss_pred             CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967          172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE  234 (521)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  234 (521)
                         ..+..++..+...|++-+|.++.+.....+......++.+..+.+|..-=..+|+-...+
T Consensus        90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               245667778888999999999998876555555566777777777766655555555543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.56  E-value=3.9  Score=34.35  Aligned_cols=90  Identities=10%  Similarity=-0.051  Sum_probs=61.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967          383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA-----LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG  457 (521)
Q Consensus       383 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  457 (521)
                      +...+...|++++|..-++.....|....+..     |.......|.+++|+..++...+.+- .+.....-++++...|
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg  173 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG  173 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence            45667788888888888876433444443333     34456777888888888876655332 3344566788888888


Q ss_pred             ChHHHHHHHHHHHhCC
Q 009967          458 KWDNVSNIRREMKEKG  473 (521)
Q Consensus       458 ~~~~A~~~~~~m~~~g  473 (521)
                      +.++|+.-|++....+
T Consensus       174 ~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         174 DKQEARAAYEKALESD  189 (207)
T ss_pred             chHHHHHHHHHHHHcc
Confidence            8888888888877765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.52  E-value=4.9  Score=39.92  Aligned_cols=15  Identities=7%  Similarity=0.319  Sum_probs=11.0

Q ss_pred             cCCChhHHHHHhccC
Q 009967           54 ESDKFSSVHQVFDEV   68 (521)
Q Consensus        54 ~~g~~~~A~~~~~~~   68 (521)
                      -++++++|+++|+.-
T Consensus         8 lnn~~~eAe~~l~~~   22 (468)
T PF10300_consen    8 LNNRFKEAEELLSPR   22 (468)
T ss_pred             HCCCHHHHHHHHHhc
Confidence            356788888888743

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.33  E-value=0.18  Score=28.66  Aligned_cols=31  Identities=16%  Similarity=0.058  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      +|..+...+...|++++|...|+++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4556666677777777777777777777663

...

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.29  E-value=0.25  Score=39.98  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHH
Q 009967          114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA  193 (521)
Q Consensus       114 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  193 (521)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++....   .-...++..|.+.|.++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            4455555666666666666666555445566666666666666666666666653322   2222334444444444444


Q ss_pred             HHHHhhC
Q 009967          194 LKLFQEM  200 (521)
Q Consensus       194 ~~~~~~~  200 (521)
                      .-++.++
T Consensus        90 ~~Ly~~~   96 (143)
T PF00637_consen   90 VYLYSKL   96 (143)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHc
Confidence            4444443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.22  E-value=0.17  Score=29.46  Aligned_cols=27  Identities=15%  Similarity=-0.097  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      +|..|...|...|++++|+++|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            366778888888888888888888554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.16  E-value=2.7  Score=35.36  Aligned_cols=59  Identities=20%  Similarity=0.205  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhccHHHHHHHHHHc
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--TLLGLLWACNHTGLVEKGYSYFSQA  367 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~  367 (521)
                      +..+...|++.|+.+.|.+.|.++.+....|...  .+..+++.....+++..+.....++
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3444444555555555555555544433223222  3344444444455555554444444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.15  E-value=6.8  Score=35.88  Aligned_cols=18  Identities=11%  Similarity=-0.250  Sum_probs=12.6

Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 009967          419 CQIHSNVELGEFAARRIL  436 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~  436 (521)
                      +.+.++++.|.+.|+-..
T Consensus       256 ~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  256 HYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHhhcCHHHHHHHHHHHH
Confidence            556778888888777543

It is also involved in sporulation [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.93  E-value=5.8  Score=34.48  Aligned_cols=197  Identities=20%  Similarity=0.144  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hHHHHHHH-H
Q 009967          241 STLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNI-VTWNAVIC-G  315 (521)
Q Consensus       241 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~  315 (521)
                      ..+......+...+.+..+...+...... ........+......+...+++..+...+.....  ++. ........ .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            44445555555555555555555555442 2222445555566666677777778877777765  222 22333333 6


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhc
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRP----NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRS  390 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  390 (521)
                      +...|+++.|...+.+...  ..|    ....+......+...++.+.+...+.......+  . ....+..+...+...
T Consensus       140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP--DDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc--ccchHHHHHhhHHHHHc
Confidence            7888999999999998855  233    233444444446778899999999988863333  2 356788888888889


Q ss_pred             CCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          391 GRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       391 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      ++++.|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999888753 3444 445555555555777899999999999998885

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.67  E-value=3.1  Score=35.02  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHHHhcCCH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKP---EHYACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGCQIHSNV  425 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~  425 (521)
                      +...|++++|..-|..+....+-.+..   ..|..-.-++.+.+.++.|+.-..+ +.+.|. ......-+.+|.+...+
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY  184 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence            456677777777777766555433321   2344445566777777777766555 333443 22333445567788899


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          426 ELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       426 ~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      ++|++-|+++++.+|....+-...++.
T Consensus       185 eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  185 EEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999766555544443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.58  E-value=8.2  Score=35.35  Aligned_cols=17  Identities=29%  Similarity=0.341  Sum_probs=11.1

Q ss_pred             HHHHcCChHHHHHHHHH
Q 009967          315 GYAQNGRGEEAIEFFER  331 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~  331 (521)
                      .+.+.++++.|...|+-
T Consensus       255 ~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHhhcCHHHHHHHHHH
Confidence            34556777777777764

It is also involved in sporulation [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.51  E-value=5  Score=32.70  Aligned_cols=51  Identities=14%  Similarity=0.181  Sum_probs=28.1

Q ss_pred             HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967          352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP  404 (521)
Q Consensus       352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  404 (521)
                      ...++.+.+..++..+.--.+-.+...++..  ..+.+.|+|.+|..+|+++.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHh
Confidence            3455666666666666544443333334433  33456666666666666654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.36  E-value=28  Score=40.95  Aligned_cols=148  Identities=7%  Similarity=0.033  Sum_probs=85.3

Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHcCCCHHHHHHHhhc-CCCCCchhHHHHHHHHHcCCC
Q 009967          113 SVIPSSTALEDLNLGKQLHAWATKVG--LQSNVFVGSAILDLYIKLSSIEEATRVFED-THNPNVVSYTTMICGLLKRER  189 (521)
Q Consensus       113 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~  189 (521)
                      .+..+-.+.+.+.+|...++.-....  -......+..+...|+..+++|....+... ...|+   ...-|-.....|+
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence            33445556777788877777631111  012234455566688888888887777663 32232   2233445566788


Q ss_pred             HHHHHHHHhhCCCC--C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhcchHHHHHHHH
Q 009967          190 FEDALKLFQEMPHR--N-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIAALGMGKSFHA  264 (521)
Q Consensus       190 ~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~  264 (521)
                      +..|...|+.+.+.  + ...++-++......|.++.++-..+-..... .+.... ++.-..+.-+.++++.....+.
T Consensus      1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            88888888888763  2 4567777777777777777666544443321 122222 2223344456666666666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.20  E-value=1.3  Score=35.91  Aligned_cols=82  Identities=15%  Similarity=0.066  Sum_probs=57.1

Q ss_pred             hHHHHHHHH---HHhcCCHHHHHHHHhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          378 EHYACMVDL---LSRSGRFKEAKEFLYDLP-FDPGIGFWKAL-LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       378 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      .+.+.|+..   -.+.++.+++..+++.+. ..|.......+ ...+...|++.+|+++|+++.+..|..+..--.++.+
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            345555444   356788999999998875 36665544333 3347788999999999999888888777666666666


Q ss_pred             HHhcCCh
Q 009967          453 LSVAGKW  459 (521)
Q Consensus       453 ~~~~g~~  459 (521)
                      +...|+.
T Consensus        88 L~~~~D~   94 (160)
T PF09613_consen   88 LYALGDP   94 (160)
T ss_pred             HHHcCCh
Confidence            6666653

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.12  E-value=16  Score=37.93  Aligned_cols=65  Identities=12%  Similarity=-0.011  Sum_probs=42.4

Q ss_pred             CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh-------HHHHHHHHHHHHhC
Q 009967           72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL-------NLGKQLHAWATKVG  138 (521)
Q Consensus        72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~  138 (521)
                      +...| ++|-.|.|.|++++|.++..+.... .......+...+..+....+.       ++...-|++..+..
T Consensus       111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~  182 (613)
T PF04097_consen  111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS  182 (613)
T ss_dssp             TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred             CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence            34566 5677789999999999999666543 456667788888888765332       34555555555443

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=91.96  E-value=4.9  Score=31.38  Aligned_cols=63  Identities=13%  Similarity=0.138  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP  372 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  372 (521)
                      .....+.....+|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++- +.|
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-ekG  150 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC-EKG  150 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-Hhc
Confidence            3444566677777777777777776653 25677777777777878888777777777774 444

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.90  E-value=0.42  Score=28.63  Aligned_cols=27  Identities=11%  Similarity=-0.017  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      +++.|...|...|++++|+.+++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344455555555555555555555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.86  E-value=0.39  Score=27.18  Aligned_cols=30  Identities=13%  Similarity=0.200  Sum_probs=25.5

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +.++..++.++...|++++|++.+++..+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            357889999999999999999999997654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.81  E-value=1.3  Score=35.38  Aligned_cols=80  Identities=16%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             HHHHHHHHH---HhcCCHHHHHHHHhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          379 HYACMVDLL---SRSGRFKEAKEFLYDLP-FDPGIGFWKAL-LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       379 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      +.+.|++..   .+.++.+++..+++.+. ..|+......+ ...+...|++.+|.++|++..+..+..+..--.++.++
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL   88 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL   88 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence            444444433   35788888888888765 35554433222 23367788888888888888887775565555566666


Q ss_pred             HhcCC
Q 009967          454 SVAGK  458 (521)
Q Consensus       454 ~~~g~  458 (521)
                      .-.|+
T Consensus        89 ~al~D   93 (153)
T TIGR02561        89 NAKGD   93 (153)
T ss_pred             HhcCC
Confidence            66665

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.77  E-value=14  Score=36.15  Aligned_cols=174  Identities=13%  Similarity=0.079  Sum_probs=97.7

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC  351 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  351 (521)
                      |-....+++..+.++.++.-.+.+-.+|.+  .+-..|..++++|..+ ..+.-..+|+++.+..+ .|...-..|...|
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y  142 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY  142 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence            555566677777777777777777777764  4555677777777776 55667777777776532 2223333344334


Q ss_pred             HhhccHHHHHHHHHHchHhCCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHh
Q 009967          352 NHTGLVEKGYSYFSQAKLEDPGMLK------PEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGIGFWKALLGGCQI  421 (521)
Q Consensus       352 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~  421 (521)
                      .+ ++.+.+..+|.++....  .|.      ...|..|...-  ..+.+....+..++.    ...-...+..+-.-|..
T Consensus       143 Ek-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         143 EK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            33 66777777777664222  121      11333333221  234555555555443    12223334444455666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          422 HSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      ..++++|++++..+++.+..|..+-..++.-+.
T Consensus       218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR  250 (711)
T COG1747         218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR  250 (711)
T ss_pred             ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence            777888888887777766555555444444433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.69  E-value=20  Score=37.73  Aligned_cols=217  Identities=11%  Similarity=-0.060  Sum_probs=117.9

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhhcCC--------CChhHHHHH
Q 009967          249 AAANIAALGMGKSFHACAVKFLGKLDVF-------VGNSLI-SFYAKCGSMEDSLLVFDKLTE--------RNIVTWNAV  312 (521)
Q Consensus       249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l  312 (521)
                      .......+++|..+..++...-..|+..       .++.+- ......|++++|.++-+...+        .....+..+
T Consensus       424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            3345567777777777766554433222       223222 223457888888887776653        455677778


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHH--HHHhhccH--HHHHHHHHHchHhCCCC-----CChhHH
Q 009967          313 ICGYAQNGRGEEAIEFFERMRINGIRPNGV---TLLGLLW--ACNHTGLV--EKGYSYFSQAKLEDPGM-----LKPEHY  380 (521)
Q Consensus       313 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~--~~~~~~~~--~~a~~~~~~~~~~~~~~-----~~~~~~  380 (521)
                      ..+..-.|++++|..+.++..+..-.-+..   .+..+..  .+...|+.  +.....+..........     +-..++
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r  583 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR  583 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence            888888999999999988766532222333   2333322  35566733  33333344332221111     112234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhh----CC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHH---
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYD----LP-FDPGIG----FWKALLGGCQIHSNVELGEFAARRILALDPED-VSSYV---  447 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~----~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~---  447 (521)
                      ..+..++.+   .+.+..-...    .. ..|...    .+..|+......||.+.|...++++....-+. +.++.   
T Consensus       584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~  660 (894)
T COG2909         584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA  660 (894)
T ss_pred             HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            445555544   3333322222    11 122222    22256677888999999999999988843221 22222   


Q ss_pred             ---HHHHHHHhcCChHHHHHHHHH
Q 009967          448 ---MLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       448 ---~l~~~~~~~g~~~~A~~~~~~  468 (521)
                         .-.......|+...+...+.+
T Consensus       661 ~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         661 AYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHhhHHHhcccCCHHHHHHHHHh
Confidence               122223456888888877766

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.67  E-value=7.9  Score=33.19  Aligned_cols=158  Identities=12%  Similarity=0.030  Sum_probs=96.3

Q ss_pred             cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 009967           73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL  152 (521)
Q Consensus        73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  152 (521)
                      +..||.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|+++.|.+-+...-+.+ +.|+ ...  +..
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D-~~DP-fR~--LWL  173 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD-PNDP-FRS--LWL  173 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC-CCCh-HHH--HHH
Confidence            4689999999999999999999999998865322222233333 2445689999988777776644 2222 111  222


Q ss_pred             HH--cCCCHHHHHH-HhhcCCCCCchhHHHHHHHHHc-CCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHhcCCh
Q 009967          153 YI--KLSSIEEATR-VFEDTHNPNVVSYTTMICGLLK-RERFEDALKLFQEMPHR-------NVVSWNAMIGGYSQTGRN  221 (521)
Q Consensus       153 ~~--~~g~~~~a~~-~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~  221 (521)
                      |.  ..-++.+|.. +.++....|..-|...|-.|.- .=..+.+.+-...-.+.       -+.||.-+..-+...|+.
T Consensus       174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~  253 (297)
T COG4785         174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL  253 (297)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH
Confidence            32  3345566654 4455555665666655544332 22223333332222221       246788888889999999


Q ss_pred             HHHHHHHHHHHHCC
Q 009967          222 EEAVNLFIEMLREG  235 (521)
Q Consensus       222 ~~a~~~~~~m~~~~  235 (521)
                      ++|..+|+.....+
T Consensus       254 ~~A~~LfKLaiann  267 (297)
T COG4785         254 DEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876643

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.61  E-value=9.3  Score=33.88  Aligned_cols=220  Identities=16%  Similarity=0.211  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc-----CCCCChhH
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLRE---GL--VPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-----LGKLDVFV  277 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~  277 (521)
                      ...++..+.+.+++++.+..|.+++.-   .+  .-+....+.++...+...+.+....+++.-++.     +-..--.+
T Consensus        68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT  147 (440)
T KOG1464|consen   68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT  147 (440)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence            344555666666666666666555321   11  122334445555444444444444444332211     10111122


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC--------C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTE--------R-------NIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNG  341 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~  341 (521)
                      -.-|...|...+++.+..++++++..        .       -...|..-|+.|....+-..-..++++...- ..-|..
T Consensus       148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP  227 (440)
T KOG1464|consen  148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP  227 (440)
T ss_pred             cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence            23456666666777777777666642        0       1235667777787777776777777765431 122443


Q ss_pred             HHHHHHHHHH-----HhhccHHHHH-HHHHHchHhCC--CCCChh---HHHHHHHHHHhcCC----HHHHHHHHhhCCCC
Q 009967          342 VTLLGLLWAC-----NHTGLVEKGY-SYFSQAKLEDP--GMLKPE---HYACMVDLLSRSGR----FKEAKEFLYDLPFD  406 (521)
Q Consensus       342 ~~~~~ll~~~-----~~~~~~~~a~-~~~~~~~~~~~--~~~~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~  406 (521)
                      .. ..+++-|     .+.|++++|. .+|+... ...  ..|...   -|..|..++.+.|-    -.+|.-    .+..
T Consensus       228 lI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNd  301 (440)
T KOG1464|consen  228 LI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKND  301 (440)
T ss_pred             HH-HhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCC
Confidence            33 3334444     3557777664 3444443 221  112222   24555666666551    111110    1125


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967          407 PGIGFWKALLGGCQIHSNVELGEFAARR  434 (521)
Q Consensus       407 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~  434 (521)
                      |.+.+...++.+|..+ +..+-.+++..
T Consensus       302 PEIlAMTnlv~aYQ~N-dI~eFE~Il~~  328 (440)
T KOG1464|consen  302 PEILAMTNLVAAYQNN-DIIEFERILKS  328 (440)
T ss_pred             HHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence            5666777788777543 44444444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.49  E-value=0.92  Score=41.32  Aligned_cols=95  Identities=15%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE  426 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~  426 (521)
                      .-|.++|.+++|+..|.+.....+  .++.++..-..+|.+..++..|+.-.+... + +.-+..|..-+.+-...|+..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            458899999999999988763333  266777777888999998888877665532 1 222336666666667778889


Q ss_pred             HHHHHHHHHHhcCCCCchH
Q 009967          427 LGEFAARRILALDPEDVSS  445 (521)
Q Consensus       427 ~A~~~~~~~~~~~p~~~~~  445 (521)
                      +|.+-++.++++.|++...
T Consensus       183 EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             HHHHhHHHHHhhCcccHHH
Confidence            9999999999999975443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.39  E-value=5.3  Score=36.78  Aligned_cols=94  Identities=12%  Similarity=0.186  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhcCC-------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhcc-
Q 009967          291 MEDSLLVFDKLTE-------RNIVTWNAVICGYAQNGR----GEEAIEFFERMRINGIRPNGV--TLLGLLWACNHTGL-  356 (521)
Q Consensus       291 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~-  356 (521)
                      ..+|..+|+.|.+       ++-.++..++..  ..++    .+.++.+|+.+.+.|+..+..  ....++..+..... 
T Consensus       119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~  196 (297)
T PF13170_consen  119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE  196 (297)
T ss_pred             HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence            3456666666654       233344444433  2222    456777788888877665433  33333333322222 


Q ss_pred             -HHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967          357 -VEKGYSYFSQAKLEDPGMLKPEHYACMVDLL  387 (521)
Q Consensus       357 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (521)
                       ..++.++++.+. +.++++....|..+.-..
T Consensus       197 ~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa  227 (297)
T PF13170_consen  197 KVARVIELYNALK-KNGVKIKYMHYPTLGLLA  227 (297)
T ss_pred             HHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence             447778888885 668887777776654443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=91.38  E-value=20  Score=37.27  Aligned_cols=400  Identities=8%  Similarity=-0.084  Sum_probs=189.0

Q ss_pred             CCChhHHHHHhccCCC-CCc-ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHH
Q 009967           55 SDKFSSVHQVFDEVPD-LNV-VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA  132 (521)
Q Consensus        55 ~g~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  132 (521)
                      ...+++...++++-+. |-. ..-..-+..+.+.+++...+..+..     .+.+...-.....+....|+.++|.....
T Consensus        79 ~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~  153 (644)
T PRK11619         79 NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAK  153 (644)
T ss_pred             cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3457777777776553 311 1222334455567777766652211     13444444556666666777666655555


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHc------------------CCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHH
Q 009967          133 WATKVGLQSNVFVGSAILDLYIK------------------LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDAL  194 (521)
Q Consensus       133 ~~~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  194 (521)
                      .+-..| ...+..++.+++.+.+                  .|+...|..+...+..........++..+.   +...+.
T Consensus       154 ~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~  229 (644)
T PRK11619        154 ELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVE  229 (644)
T ss_pred             HHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHH
Confidence            444444 2334444555555444                  444444444444442111111222222222   222333


Q ss_pred             HHHhhCCCCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 009967          195 KLFQEMPHRNVVSWNAMIGG--YSQTGRNEEAVNLFIEMLREG-LVPNHS--TLPCAIIAAANIAALGMGKSFHACAVKF  269 (521)
Q Consensus       195 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~  269 (521)
                      ..+.... ++...-...+.+  -....+.+.|...+....... ..+...  ....+.......+....+...+......
T Consensus       230 ~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~  308 (644)
T PRK11619        230 TFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR  308 (644)
T ss_pred             HHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence            3333221 111111111111  123455677888887764433 222211  1122222222221133444444433222


Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 009967          270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG  346 (521)
Q Consensus       270 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~  346 (521)
                      .  .+......-+....+.++++.+...+..|.+   ....-.-=+..++...|+.++|...|+.+...   .   +|..
T Consensus       309 ~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG  380 (644)
T PRK11619        309 S--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYP  380 (644)
T ss_pred             c--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHH
Confidence            1  2344444455566678888888888888764   22222333455656678888888888886431   1   3443


Q ss_pred             HHHHHHhhccHHHHHHHHHHch-HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 009967          347 LLWACNHTGLVEKGYSYFSQAK-LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV  425 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  425 (521)
                      ++.+ .+.|..-. ... .... ....+...+  --.-+..+...|+...|...+..+....+......+.......|.+
T Consensus       381 ~LAa-~~Lg~~~~-~~~-~~~~~~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~  455 (644)
T PRK11619        381 MVAA-QRLGEEYP-LKI-DKAPKPDSALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWW  455 (644)
T ss_pred             HHHH-HHcCCCCC-CCC-CCCCchhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCH
Confidence            3322 11221100 000 0000 000000011  1123455667789989988887754345555556666666677888


Q ss_pred             HHHHHHHHHHHhcC-C--CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 009967          426 ELGEFAARRILALD-P--EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV  477 (521)
Q Consensus       426 ~~A~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~  477 (521)
                      +.++....+....+ .  .-|..|...+..+.+.-..+.++-.---..+.++.|.
T Consensus       456 ~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~  510 (644)
T PRK11619        456 DLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK  510 (644)
T ss_pred             HHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence            88887776543311 0  1233455566666655566666544333446666654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.27  E-value=20  Score=37.02  Aligned_cols=147  Identities=12%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             HHHHHhcCChHHHHHHHHHhHHCCCCC---ChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcC
Q 009967           80 IGRFAKQHHYEEAIYLFSRMLLLNIRP---SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL  156 (521)
Q Consensus        80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  156 (521)
                      ++.+.+.+.+++|++.-+.-.  |..|   ........|..+...|+++.|-...-.|..    -+..-|...+..+...
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL  436 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence            445566666677766655433  2223   223344555556666666666555555543    2233343334444444


Q ss_pred             CCHHHHHHHhhcCCC-CCchhHHHHHHHHHcCCCHHHHHHHHhhCC------------------C--CChhHHHHHHHHH
Q 009967          157 SSIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDALKLFQEMP------------------H--RNVVSWNAMIGGY  215 (521)
Q Consensus       157 g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~------------------~--~~~~~~~~l~~~~  215 (521)
                      ++......++=.-.. -+...|..++..+.. .+...-.+......                  +  .+...-..|+..|
T Consensus       437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY  515 (846)
T KOG2066|consen  437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY  515 (846)
T ss_pred             cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence            433322222111111 233445555555444 22222222222111                  0  1223344578888


Q ss_pred             HhcCChHHHHHHHHHHHH
Q 009967          216 SQTGRNEEAVNLFIEMLR  233 (521)
Q Consensus       216 ~~~~~~~~a~~~~~~m~~  233 (521)
                      ...++++.|+.++-..+.
T Consensus       516 l~d~~Y~~Al~~ylklk~  533 (846)
T KOG2066|consen  516 LYDNKYEKALPIYLKLQD  533 (846)
T ss_pred             HHccChHHHHHHHHhccC
Confidence            888888888888766644

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.19  E-value=26  Score=38.16  Aligned_cols=52  Identities=19%  Similarity=0.124  Sum_probs=24.0

Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      +.+|...|+|.+|..+..++.  .+  -+..  +-..|+.-+...+++-+|-++..+.
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~--~~--~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLS--EG--KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhc--CC--HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            344555555555555555442  11  1111  1134455555555555555555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.18  E-value=0.44  Score=26.69  Aligned_cols=27  Identities=11%  Similarity=0.016  Sum_probs=16.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          415 LLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       415 l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      +..++...|++++|.+.|+++++..|+
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444555566666666666666666664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.17  E-value=0.51  Score=26.76  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +.+|..++.+|...|++++|+..+++..+.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999998754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.79  E-value=3.9  Score=34.42  Aligned_cols=93  Identities=13%  Similarity=0.058  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---H
Q 009967          276 FVGNSLISFYAKCGSMEDSLLVFDKLTERN------IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL---G  346 (521)
Q Consensus       276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~  346 (521)
                      ..+..+.+.|.+.|+.+.|.+.|.++.+..      ...+-.+|......+++..+...+.+....--.+......   .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            456778899999999999999999988632      2467778888888999999999888876532222221111   1


Q ss_pred             HHHH--HHhhccHHHHHHHHHHch
Q 009967          347 LLWA--CNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       347 ll~~--~~~~~~~~~a~~~~~~~~  368 (521)
                      ...+  +...+++..|-+.|-...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            1111  345677777777776553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.71  E-value=4.8  Score=29.74  Aligned_cols=71  Identities=14%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             HHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967          314 CGYAQNGRGE--EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL  386 (521)
Q Consensus       314 ~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (521)
                      ..|....+.+  +..+-++.+....+.|+.......+++|.+.+++..|.++++-++.+.+.  ....|..+++-
T Consensus        16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE   88 (108)
T PF02284_consen   16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE   88 (108)
T ss_dssp             HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred             HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence            3444444333  55566666777788899999999999999999999999999998877773  33367766653

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK09687 putative lyase; Provisional

Probab=90.38  E-value=14  Score=33.80  Aligned_cols=73  Identities=8%  Similarity=-0.101  Sum_probs=35.3

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      +..+-...+.++.+.|+....-.+++.+. .++.  ....+.++...|+. +|+..+.++.+.+| |..+-.....++
T Consensus       205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~  277 (280)
T PRK09687        205 NEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL  277 (280)
T ss_pred             ChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence            44445555555555555332223333333 2332  23445555555653 46666666666555 544444444443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.36  E-value=11  Score=32.70  Aligned_cols=21  Identities=19%  Similarity=0.150  Sum_probs=11.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCc
Q 009967          423 SNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      .|.-.+...+++..+.+|.-.
T Consensus       209 ~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  209 ADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             ccHHHHHHHHHHHHhcCCccc
Confidence            455555555566666655433

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.30  E-value=15  Score=33.93  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--h----cchHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCH
Q 009967          221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN--I----AALGMGKSFHACAVKFLGK---LDVFVGNSLISFYAKCGSM  291 (521)
Q Consensus       221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~  291 (521)
                      +++.+.+++.|.+.|..-+..+|.+.......  .    .....+..+++.|.+.-+-   ++-..+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566777888888877777776654444333  1    2356777888888876543   233344444332  33333


Q ss_pred             ----HHHHHHHhhcCC-----CC-hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-c--
Q 009967          292 ----EDSLLVFDKLTE-----RN-IVTWNAVICGYAQNGR--GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG-L--  356 (521)
Q Consensus       292 ----~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~--  356 (521)
                          +.++.+|+.+.+     .| ......++...-....  ...+.++++.+.+.|+++....|..+.-...-.+ .  
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence                445566665553     22 2333333333222211  5578899999999999988777666544332222 2  


Q ss_pred             -HHHHHHHHHHchHhCC
Q 009967          357 -VEKGYSYFSQAKLEDP  372 (521)
Q Consensus       357 -~~~a~~~~~~~~~~~~  372 (521)
                       .+...++.+.+.+..+
T Consensus       236 ~~~~i~ev~~~L~~~k~  252 (297)
T PF13170_consen  236 IVEEIKEVIDELKEQKG  252 (297)
T ss_pred             HHHHHHHHHHHHhhCcc
Confidence             3344455555544444

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.10  E-value=46  Score=39.31  Aligned_cols=316  Identities=10%  Similarity=0.020  Sum_probs=171.1

Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCC----C--CchhHHHHHHHHHcCCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhcCC
Q 009967          148 AILDLYIKLSSIEEATRVFEDTHN----P--NVVSYTTMICGLLKRERFEDALKLFQE-MPHRNVVSWNAMIGGYSQTGR  220 (521)
Q Consensus       148 ~l~~~~~~~g~~~~a~~~~~~~~~----~--~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~  220 (521)
                      .+..+=.++|.+.+|...+++-..    .  ....|-.+-..|+..+++|....+... ...++.   ..-|......|+
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence            344455678888999998888421    1  112233344488888888888777773 333332   234455667899


Q ss_pred             hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHhcCCHHHHHHHH
Q 009967          221 NEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN-SLISFYAKCGSMEDSLLVF  298 (521)
Q Consensus       221 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~  298 (521)
                      +..|...|+.+.+.+  |+ ..+++-++......|.++...-..+-......+ ....++ .=+.+--+.++|+......
T Consensus      1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            999999999998865  44 667777777777777777666544443332221 222222 2244456777887777766


Q ss_pred             hhcCCCChhHHHHH--HHHHHHcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHhhccHHHHHHHHH
Q 009967          299 DKLTERNIVTWNAV--ICGYAQNG--RGEEAIEFFERMRINGIRP--------N-GVTLLGLLWACNHTGLVEKGYSYFS  365 (521)
Q Consensus       299 ~~~~~~~~~~~~~l--i~~~~~~~--~~~~A~~~~~~m~~~~~~p--------~-~~~~~~ll~~~~~~~~~~~a~~~~~  365 (521)
                      .   ..+..+|.+.  +....+..  |.-.-.+..+.+++.-+.|        + ...|..++....-. +.+.-.+.+.
T Consensus      1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK 1617 (2382)
T ss_pred             h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence            6   4455555554  22222222  2111112333333211111        0 11233333322111 1111111111


Q ss_pred             HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh----CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967          366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD----LPFDPG-----IGFWKALLGGCQIHSNVELGEFAARRIL  436 (521)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  436 (521)
                      ..........+..-|..-+..-....+..+-+--+++    ...+|+     ...|-..++.....|.++.|...+-.+.
T Consensus      1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred             ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence            1100000001111122111111111111111111111    111222     3478888888999999999999998888


Q ss_pred             hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967          437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       437 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  475 (521)
                      +..  -+.++.-.+..+...|+-..|..++++..+....
T Consensus      1698 e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1698 ESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred             hcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence            876  4677888999999999999999999998866543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.97  E-value=0.39  Score=38.83  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=44.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967           79 IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS  158 (521)
Q Consensus        79 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  158 (521)
                      +++.+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.       .+..-...+++.|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence            4555555666666666666666555444555666666666666655666555541       111222344555555565


Q ss_pred             HHHHHHHhhcC
Q 009967          159 IEEATRVFEDT  169 (521)
Q Consensus       159 ~~~a~~~~~~~  169 (521)
                      ++++.-++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            55555555444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.96  E-value=2.7  Score=30.65  Aligned_cols=62  Identities=15%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967          322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD  385 (521)
Q Consensus       322 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  385 (521)
                      .=++.+-++.+....+.|+.......+++|.+.+++..|.++++-++.+.+.  +...|..+++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            3355666666666778888888888888888888888888888887655552  4445665554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.86  E-value=18  Score=34.30  Aligned_cols=54  Identities=9%  Similarity=0.008  Sum_probs=31.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967          211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       211 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      .+.+..+.|+++...+........  .++...+..+...  ..++.+.+..+.+.+..
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            356777888888855544444322  1333334333333  67778877777766654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=89.69  E-value=2.6  Score=27.03  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC
Q 009967          445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL  521 (521)
Q Consensus       445 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  521 (521)
                      .+..++-++.+.|++++|.++.+.+.+.                          .|+..+.......+.+.+++.+|
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl   53 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL   53 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence            4567888999999999999999998753                          46667777777777777776653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.60  E-value=0.58  Score=24.75  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=17.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHH
Q 009967          444 SSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       444 ~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      .+...++.++...|+.++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667777777777777777665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=89.54  E-value=6.4  Score=28.95  Aligned_cols=51  Identities=18%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             HHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009967          183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG  235 (521)
Q Consensus       183 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  235 (521)
                      .+...|++++|..+.+.+.-||...|.++..  .+.|-.++...-+..|..+|
T Consensus        48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg   98 (115)
T TIGR02508        48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG   98 (115)
T ss_pred             HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence            4556666666666666666666666665543  35565666666665665554

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.30  E-value=30  Score=35.97  Aligned_cols=176  Identities=13%  Similarity=0.147  Sum_probs=88.5

Q ss_pred             HHHHHHHHhHH-CCCCCChh--hHHHHHHHHc-CCCChHHHHHHHHHHHHhCCCCcHH-----HHHHHHHHHHcCCCHHH
Q 009967           91 EAIYLFSRMLL-LNIRPSEF--TFGSVIPSST-ALEDLNLGKQLHAWATKVGLQSNVF-----VGSAILDLYIKLSSIEE  161 (521)
Q Consensus        91 ~A~~~~~~m~~-~~~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~  161 (521)
                      .|++.++-+.+ ..++|...  ++..+...+. ...+++.|+..+++....--.++..     ....++..+.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            35556666653 33333322  3444444443 6678888888888665433222221     2234556666666555 


Q ss_pred             HHHHhhcCCC----CCchhHH----HH-HHHHHcCCCHHHHHHHHhhCCC-------CChhHHHHHHHHH--HhcCChHH
Q 009967          162 ATRVFEDTHN----PNVVSYT----TM-ICGLLKRERFEDALKLFQEMPH-------RNVVSWNAMIGGY--SQTGRNEE  223 (521)
Q Consensus       162 a~~~~~~~~~----~~~~~~~----~l-i~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~--~~~~~~~~  223 (521)
                      |.+.+++..+    .....|.    .+ +..+...++...|.+.++.+..       +...++..++.+.  .+.+..+.
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d  197 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD  197 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence            7777766554    1111222    22 1222233677777777776543       2223333343333  34455666


Q ss_pred             HHHHHHHHHHCC--C-------CCChhhHHHHHHHHH--hhcchHHHHHHHHHHH
Q 009967          224 AVNLFIEMLREG--L-------VPNHSTLPCAIIAAA--NIAALGMGKSFHACAV  267 (521)
Q Consensus       224 a~~~~~~m~~~~--~-------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~  267 (521)
                      +.+.++.+....  +       .|...++..++..++  ..|+++.+...++++.
T Consensus       198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            766666653321  1       233445555555443  4555556665555543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.08  E-value=24  Score=34.53  Aligned_cols=240  Identities=11%  Similarity=0.025  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch------HHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCCHH-
Q 009967          222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL------GMGKSFHACAVKFL-G-KLDVFVGNSLISFYAKCGSME-  292 (521)
Q Consensus       222 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~-  292 (521)
                      +....+|++..+  ..|+...+...|..|...-..      ....-+++...+.+ . +.....|..+.-+++..+... 
T Consensus       299 s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~  376 (568)
T KOG2396|consen  299 SRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE  376 (568)
T ss_pred             HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence            344566666655  345666666666666544332      22233333333321 1 223445555555555555433 


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHH--HHHHHHc
Q 009967          293 DSLLVFDKLTERNIVTWNAVICGYAQN-GRGEEA-IEFFERMRINGIRPNGVTLLGLLWACNHTGL-VEKG--YSYFSQA  367 (521)
Q Consensus       293 ~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a--~~~~~~~  367 (521)
                      .|..+-.+....+...|-.-++..... .+++-- ..++......-..+-...|+...     .++ ....  ..++...
T Consensus       377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~  451 (568)
T KOG2396|consen  377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL  451 (568)
T ss_pred             HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence            344444455555666666555554432 122211 12222333221122222333322     122 1111  1223333


Q ss_pred             hHhCCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 009967          368 KLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLPF--DPGIGFWKALLGGCQ--IHSNVELGEFAARRILALDPED  442 (521)
Q Consensus       368 ~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~  442 (521)
                      . ..+ .|+..+ -+.+++-+.+.|-..+|...+..+..  +|....+..++..-.  ..-+..-+..+|+.+......+
T Consensus       452 ~-s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d  529 (568)
T KOG2396|consen  452 L-SVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD  529 (568)
T ss_pred             H-Hhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence            2 222 244443 45678888889999999999887542  566777887776522  2234778889999988855578


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +..|......-...|..+.+-.++.+..
T Consensus       530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~  557 (568)
T KOG2396|consen  530 SDLWMDYMKEELPLGRPENCGQIYWRAM  557 (568)
T ss_pred             hHHHHHHHHhhccCCCcccccHHHHHHH
Confidence            9999888888888888888877765543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.97  E-value=3.9  Score=34.69  Aligned_cols=72  Identities=19%  Similarity=0.059  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHcCCCHHHH
Q 009967           90 EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG---LQSNVFVGSAILDLYIKLSSIEEA  162 (521)
Q Consensus        90 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a  162 (521)
                      +.|.+.|-.+...+.--++.....+...|. ..+.++++.++...++..   -.+|+..+.+|+..|.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            455555555554443333333333333332 455566666655555431   244555566666666666555554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.90  E-value=3.7  Score=37.06  Aligned_cols=76  Identities=9%  Similarity=0.060  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH-----hCCCCcHHHHHHHH
Q 009967           76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-----VGLQSNVFVGSAIL  150 (521)
Q Consensus        76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~  150 (521)
                      +..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+.....
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            3344555555666666666666666543 34556666666666666666666666666554     35556555554444


Q ss_pred             HH
Q 009967          151 DL  152 (521)
Q Consensus       151 ~~  152 (521)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            33

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.47  E-value=0.78  Score=25.62  Aligned_cols=28  Identities=11%  Similarity=0.216  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          445 SYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       445 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ++..++.++.+.|++++|.++|+++++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5678899999999999999999998865

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=88.44  E-value=3.4  Score=39.94  Aligned_cols=94  Identities=12%  Similarity=0.130  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHH-HHHhcCCHHHHHHHHH
Q 009967          357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLG-GCQIHSNVELGEFAAR  433 (521)
Q Consensus       357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~-~~~~~g~~~~A~~~~~  433 (521)
                      ..+...+|+.+..+.+  -|+..|...+..+.+.+.+.+.-.+|.+|. ..|+ +..|-.-+. -+-.+-+++.|..+|.
T Consensus        87 ~~rIv~lyr~at~rf~--~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFN--GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            3455666666644443  477788888877777777888888887753 2333 233332222 2444556888889999


Q ss_pred             HHHhcCCCCchHHHHHHHH
Q 009967          434 RILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       434 ~~~~~~p~~~~~~~~l~~~  452 (521)
                      +.++.+|++|..|....+.
T Consensus       165 rgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             HHhhcCCCChHHHHHHHHH
Confidence            9999888888887776665

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=88.09  E-value=2.6  Score=38.60  Aligned_cols=92  Identities=22%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967          313 ICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG  391 (521)
Q Consensus       313 i~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  391 (521)
                      ..-|.++|.+++|+..|.....  +.| |.+++..-..+|.+...+..|+.-...+.....  .-...|..-+.+-...|
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHHh
Confidence            4568999999999999998776  456 888888888899999999888776665541111  11122333333333345


Q ss_pred             CHHHHHHHHhh-CCCCCC
Q 009967          392 RFKEAKEFLYD-LPFDPG  408 (521)
Q Consensus       392 ~~~~A~~~~~~-~~~~~~  408 (521)
                      ...+|.+-++. +.++|+
T Consensus       180 ~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPK  197 (536)
T ss_pred             hHHHHHHhHHHHHhhCcc
Confidence            55555555544 234666

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.02  E-value=1.1  Score=26.67  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ..+++.++.+|...|++++|..++++..+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999998653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=87.87  E-value=2.4  Score=36.80  Aligned_cols=50  Identities=24%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      .+.++++.+..--++++++.|+.......++.++.....+++|+..+.+.
T Consensus        55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444443

>PRK09687 putative lyase; Provisional

Probab=87.87  E-value=22  Score=32.61  Aligned_cols=73  Identities=7%  Similarity=-0.028  Sum_probs=32.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC  351 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  351 (521)
                      +..+-...+.++.+.|+......+.+.+..++  .....+.++...|+. +|...+..+...  .||...-...+.+|
T Consensus       205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            44444445555555555333333333333333  223445555555553 455555555542  24544444444433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.86  E-value=9.7  Score=37.91  Aligned_cols=150  Identities=14%  Similarity=0.074  Sum_probs=87.6

Q ss_pred             HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 009967          286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS  365 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  365 (521)
                      .-.|+++.|..++..+.++.   -+.++..+-++|-.++|+++-       ..||.. |    ....+.|+++.|.++..
T Consensus       597 vmrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s-------~D~d~r-F----elal~lgrl~iA~~la~  661 (794)
T KOG0276|consen  597 VLRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELS-------TDPDQR-F----ELALKLGRLDIAFDLAV  661 (794)
T ss_pred             hhhccccccccccccCchhh---hhhHHhHhhhccchHhhhhcC-------CChhhh-h----hhhhhcCcHHHHHHHHH
Confidence            34567777776666655322   233444455566665555431       122222 2    22345677777777766


Q ss_pred             HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967          366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS  445 (521)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  445 (521)
                      +..       +..-|..|.++....|++..|.+.|.+..      -|..|+-.+...|+-+.-..+-....+.+..|   
T Consensus       662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N---  725 (794)
T KOG0276|consen  662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN---  725 (794)
T ss_pred             hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence            542       44457778888888888888887776643      25556666666677665555555555554433   


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHH
Q 009967          446 YVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       446 ~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                        ....+|...|+++++.+++.+
T Consensus       726 --~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  726 --LAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             --hHHHHHHHcCCHHHHHHHHHh
Confidence              233456667777777776655

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.47  E-value=7.1  Score=32.45  Aligned_cols=64  Identities=13%  Similarity=0.132  Sum_probs=36.5

Q ss_pred             CCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          406 DPGI-GFWKALLGGCQIHS-----------NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       406 ~~~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      +|+. .++..+..++...+           .+++|...|+++.+.+|+ -.+|..-+...      +.|-++..++.+.+
T Consensus        65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~~------~kap~lh~e~~~~~  137 (186)
T PF06552_consen   65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEMA------AKAPELHMEIHKQG  137 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence            5653 35555555543322           366778888888889994 45555555554      45777777777666


Q ss_pred             Ccc
Q 009967          474 MTR  476 (521)
Q Consensus       474 ~~~  476 (521)
                      ..+
T Consensus       138 ~~~  140 (186)
T PF06552_consen  138 LGQ  140 (186)
T ss_dssp             S--
T ss_pred             hhh
Confidence            443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.46  E-value=1.1  Score=25.60  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=19.6

Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHH
Q 009967          132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEAT  163 (521)
Q Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  163 (521)
                      ++.++.. |-+...|+.+..+|...|++++|+
T Consensus         3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3444433 455667777777777777777764

>PRK10941 hypothetical protein; Provisional

Probab=87.45  E-value=7.6  Score=35.15  Aligned_cols=63  Identities=16%  Similarity=0.031  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ..+.+-.+|.+.++++.|++..+.++...|+++.-+..-+-.|.+.|.+..|..=++..++..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            345555678899999999999999999999999999999999999999999999888876653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.32  E-value=1.6  Score=24.59  Aligned_cols=28  Identities=14%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          444 SSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       444 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      .+|..++..|...|++++|...|++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4688999999999999999999998765

...

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.30  E-value=2  Score=38.85  Aligned_cols=90  Identities=18%  Similarity=0.143  Sum_probs=54.1

Q ss_pred             hhhhcccCCChhHHHHHhccCCC-CCc-----ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCC
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPD-LNV-----VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL  121 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  121 (521)
                      ++..-.....+++++..+=++.. |+.     .+-.++++.+.+ -++++++.++..=.+.|+-||.++++.+|..+.+.
T Consensus        70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~  148 (418)
T KOG4570|consen   70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK  148 (418)
T ss_pred             hhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhc
Confidence            44455556667777666655442 211     111233333333 35667777777777777777777777777777777


Q ss_pred             CChHHHHHHHHHHHHhC
Q 009967          122 EDLNLGKQLHAWATKVG  138 (521)
Q Consensus       122 ~~~~~a~~~~~~~~~~~  138 (521)
                      +++..|.++...|....
T Consensus       149 ~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  149 ENYKDAASVVTEVMMQE  165 (418)
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            77777777766666543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=87.25  E-value=1.2  Score=28.57  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=26.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967          414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSY  446 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  446 (521)
                      .+.-++.+.|++++|.+..+.+++..|+|..+-
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            456678999999999999999999999877653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.09  E-value=1.4  Score=27.02  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=22.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          447 VMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       447 ~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ..++.+|...|+.+.|++++++....|
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            467889999999999999999988654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.83  E-value=40  Score=34.53  Aligned_cols=16  Identities=19%  Similarity=0.096  Sum_probs=8.5

Q ss_pred             CHHHHHHHHHHHHhcC
Q 009967          424 NVELGEFAARRILALD  439 (521)
Q Consensus       424 ~~~~A~~~~~~~~~~~  439 (521)
                      +...|...++++.+.+
T Consensus       379 ~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  379 NLELAFAYYKKAAEKG  394 (552)
T ss_pred             CHHHHHHHHHHHHHcc
Confidence            4555555555555544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.70  E-value=13  Score=35.86  Aligned_cols=123  Identities=10%  Similarity=0.017  Sum_probs=73.0

Q ss_pred             hhccHHHHHH-HHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009967          353 HTGLVEKGYS-YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       353 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      ..|++-.|-+ ++..+ ..++..|+.....  .......|+++.+...+....  +.....+...++......|++++|.
T Consensus       301 ~~gd~~aas~~~~~~l-r~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        301 ADGDIIAASQQLFAAL-RNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             hccCHHHHHHHHHHHH-HhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            3455544433 33333 3444444443332  333456677777777766543  2344556666777777777777777


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 009967          430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP  478 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~  478 (521)
                      ...+.++...-.++.+....+-.....|-++++...|+++...+.+.+.
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence            7777777766556666665555556667777888778777654443333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.55  E-value=43  Score=34.73  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTERNI  306 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  306 (521)
                      .-..|+..|...+++..|.+++-...++++
T Consensus       507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v  536 (846)
T KOG2066|consen  507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV  536 (846)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence            344588899999999999999998887554

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=85.88  E-value=14  Score=29.03  Aligned_cols=72  Identities=15%  Similarity=0.041  Sum_probs=43.6

Q ss_pred             CCChhHHHHHHHHHHhcCCHHH---HHHHHhhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967          374 MLKPEHYACMVDLLSRSGRFKE---AKEFLYDLP--FDPG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS  445 (521)
Q Consensus       374 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  445 (521)
                      .++..+--.+..++.+..+.++   -+.+++++-  ..|+  .....-|.-++.+.++++.++++.+.+++..|+|+.+
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            4566666667777777665443   344555532  2232  2233445556777778888888888877777766544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=85.82  E-value=3.7  Score=29.92  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       432 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +++.++.+|+|......++..+...|++++|.+.+-++++.
T Consensus        11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen   11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34444455555555555555555555555555555554433

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.55  E-value=52  Score=34.72  Aligned_cols=270  Identities=11%  Similarity=0.088  Sum_probs=0.0

Q ss_pred             hhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHH
Q 009967           50 SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ  129 (521)
Q Consensus        50 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  129 (521)
                      ..|...|+++.|.++-..-+..--..+..-.+.+.+.+++..|.++|.++        ...|..+.--+....+.+ +++
T Consensus       366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~-~L~  436 (911)
T KOG2034|consen  366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER-ALR  436 (911)
T ss_pred             HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH-HHH


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-----------------------CCchhHHHHHHHHHc
Q 009967          130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-----------------------PNVVSYTTMICGLLK  186 (521)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~  186 (521)
                      .|-.=+=..++|...+-..++..+.-.-.+++--.+-..-.+                       .+...+.+....+..
T Consensus       437 ~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~  516 (911)
T KOG2034|consen  437 TFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLAS  516 (911)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH


Q ss_pred             CCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH-------------------------HHHHHCCCCCChh
Q 009967          187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF-------------------------IEMLREGLVPNHS  241 (521)
Q Consensus       187 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------------------------~~m~~~~~~p~~~  241 (521)
                      .|+.+.+..+-.-+.+     |..++.-+...+.+++|++++                         ......+-..+..
T Consensus       517 ~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~  591 (911)
T KOG2034|consen  517 HGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDLDPNR  591 (911)
T ss_pred             ccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHccccCchh


Q ss_pred             hHHHHHHHHHhh---cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 009967          242 TLPCAIIAAANI---AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK--CGSMEDSLLVFDKLTERNIVTWNAVICGY  316 (521)
Q Consensus       242 ~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li~~~  316 (521)
                      ....++..+.+.   .....+..+++.....-...++..+|.++..|++  ..+.-.=.+.-..+......-..--+..|
T Consensus       592 li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc  671 (911)
T KOG2034|consen  592 LIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALRLC  671 (911)
T ss_pred             hhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHHHHH


Q ss_pred             HHcCChHHHHHHHHHHH
Q 009967          317 AQNGRGEEAIEFFERMR  333 (521)
Q Consensus       317 ~~~~~~~~A~~~~~~m~  333 (521)
                      .+.+.-..+..++..|.
T Consensus       672 ~~~~~~ra~V~l~~~l~  688 (911)
T KOG2034|consen  672 LKFKKTRACVFLLCMLN  688 (911)
T ss_pred             HHhCccceeeeHHHHHH

>smart00028 TPR Tetratricopeptide repeats

Probab=85.44  E-value=1.9  Score=23.14  Aligned_cols=29  Identities=17%  Similarity=0.056  Sum_probs=16.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          412 WKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      |..+...+...|+++.|...+++.++..|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            34445555555666666666666655554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.91  E-value=9.8  Score=32.37  Aligned_cols=73  Identities=14%  Similarity=0.092  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC-C-CCChhHHHHHHHHHHhcCCHHHH
Q 009967          323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP-G-MLKPEHYACMVDLLSRSGRFKEA  396 (521)
Q Consensus       323 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A  396 (521)
                      +.|.+.|-.+...+.--+......|.. |....+.+++..++.++.+..+ - .+|+..+..|+..|.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            456666666665554334333333333 3334566666666665543322 1 35666666677776666666655

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.72  E-value=19  Score=28.96  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=27.3

Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP  404 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  404 (521)
                      ..++.+++..++..+.--.+-.+...++..  ..+...|+|++|.++|+++.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~   71 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELL   71 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhh
Confidence            355666666666666544444444444433  23446666666666666654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=84.53  E-value=31  Score=35.56  Aligned_cols=176  Identities=10%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChh----------HHHHHHHHHHHcCCh
Q 009967          257 GMGKSFHACAVKFLGKLD---VFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIV----------TWNAVICGYAQNGRG  322 (521)
Q Consensus       257 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~  322 (521)
                      ++-..++..|.+.--.|+   ..+...++-.|....+++...++.+.+.. ||..          .|.-.+.---+.|+-
T Consensus       180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR  259 (1226)
T KOG4279|consen  180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR  259 (1226)
T ss_pred             HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence            344456666666554444   34455566667777788888888887765 3321          122222222345677


Q ss_pred             HHHHHHHHHHHHC--CCCCCHHH-----HHHH--HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH------
Q 009967          323 EEAIEFFERMRIN--GIRPNGVT-----LLGL--LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL------  387 (521)
Q Consensus       323 ~~A~~~~~~m~~~--~~~p~~~~-----~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~------  387 (521)
                      ++|+.+.-.|.+.  .+.||...     |.-+  -..|...+..+.|.+.|++.-+..+..-...-+..|+.+-      
T Consensus       260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fen  339 (1226)
T KOG4279|consen  260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFEN  339 (1226)
T ss_pred             HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccc
Confidence            8888877776653  34566543     2211  1224566778888898887653332221222233333322      


Q ss_pred             ---------------HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967          388 ---------------SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED  442 (521)
Q Consensus       388 ---------------~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  442 (521)
                                     ++.|..+...++|+       +   .....+-....|+.+|++..+.|.++.|+.
T Consensus       340 s~Elq~IgmkLn~LlgrKG~leklq~YWd-------V---~~y~~asVLAnd~~kaiqAae~mfKLk~P~  399 (1226)
T KOG4279|consen  340 SLELQQIGMKLNSLLGRKGALEKLQEYWD-------V---ATYFEASVLANDYQKAIQAAEMMFKLKPPV  399 (1226)
T ss_pred             hHHHHHHHHHHHHHhhccchHHHHHHHHh-------H---HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence                           22222222222221       1   123344556789999999999999988763

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.49  E-value=2.6  Score=23.18  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=25.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      |+.+.|..+|++++...|.++..|..++..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            577889999999999989888888887754

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.16  E-value=28  Score=30.43  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=34.2

Q ss_pred             HHHHHHHc-CChHHHHHHHHHHHH--CCCCCCHH---HHHHHHHHHHhhccHHHHHHHHHHchHhCCC
Q 009967          312 VICGYAQN-GRGEEAIEFFERMRI--NGIRPNGV---TLLGLLWACNHTGLVEKGYSYFSQAKLEDPG  373 (521)
Q Consensus       312 li~~~~~~-~~~~~A~~~~~~m~~--~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  373 (521)
                      +...|-.. .+++.|+..|+..-+  .|-..+..   .+..+...-...+++.+|..+|+++. ...+
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva-~~s~  185 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA-RSSL  185 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            33344333 566777777776554  22222222   23333333466788999999999885 4443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.59  E-value=33  Score=34.47  Aligned_cols=98  Identities=18%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             cCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHH
Q 009967          186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC  265 (521)
Q Consensus       186 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  265 (521)
                      +.|+++.|.++..+..  +..-|..|.++..+.+++..|.+.|.....         |..++-.+...|+.+....+-..
T Consensus       649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~  717 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL  717 (794)
T ss_pred             hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence            4455555555544332  445566666666666666666666655433         23344444444554444444444


Q ss_pred             HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967          266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK  300 (521)
Q Consensus       266 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  300 (521)
                      ..+.|..      |...-+|...|+++++.+++..
T Consensus       718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence            4443322      2223334444555555444433

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.10  E-value=48  Score=35.48  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHH
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLL  101 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  101 (521)
                      ..|..|+..|...|+.++|+++|.+...
T Consensus       505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  505 KKYRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence            4688899999999999999999999876

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=82.09  E-value=55  Score=32.29  Aligned_cols=175  Identities=12%  Similarity=0.036  Sum_probs=94.7

Q ss_pred             CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 009967          238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVIC  314 (521)
Q Consensus       238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  314 (521)
                      .|...+.+++..+.....+.-++.+-.++..-|-  +...+..++++|... ..+.-..+|+++.+   .|++.-..|..
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            4455555666666666666666666666655542  345566666766666 44555556665544   33333344444


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRP--N---GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR  389 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (521)
                      .|-+ ++.+.+...|.++...=++-  +   ...|..+...  -..+.+....+...+....|...-...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4444 66666666666655432210  1   1133333321  1345666666666666555554455556666677777


Q ss_pred             cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 009967          390 SGRFKEAKEFLYDLP--FDPGIGFWKALLGG  418 (521)
Q Consensus       390 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~  418 (521)
                      ..++++|++++..+.  .+.|..+-..++..
T Consensus       218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~  248 (711)
T COG1747         218 NENWTEAIRILKHILEHDEKDVWARKEIIEN  248 (711)
T ss_pred             ccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence            777888888777543  13344444444443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=81.26  E-value=6.9  Score=35.36  Aligned_cols=84  Identities=14%  Similarity=0.118  Sum_probs=58.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCC
Q 009967          419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN  498 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  498 (521)
                      ..+.|+.++|..+|+.++.+.|+++.++..++......++.-+|-++|-+    .+..+|+.+-.+        ++.++-
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~----ALtisP~nseAL--------vnR~RT  193 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK----ALTISPGNSEAL--------VNRART  193 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe----eeeeCCCchHHH--------hhhhcc
Confidence            45678889999999999999999998888888887777777778777765    344455555443        334445


Q ss_pred             CCCcHHHHHHHHHHHH
Q 009967          499 HHMNDEIYAVLRSCTE  514 (521)
Q Consensus       499 ~~~~~~i~~~l~~~~~  514 (521)
                      -|-+.+|-+.+=+.+.
T Consensus       194 ~plV~~iD~r~l~svd  209 (472)
T KOG3824|consen  194 TPLVSAIDRRMLRSVD  209 (472)
T ss_pred             chHHHHHHHHHHHHHH
Confidence            5666666555444433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.11  E-value=3.3  Score=21.81  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=8.9

Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q 009967          382 CMVDLLSRSGRFKEAKEFL  400 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~  400 (521)
                      .+...+...|++++|..++
T Consensus         6 ~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            3444444445544444444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=80.86  E-value=14  Score=27.38  Aligned_cols=60  Identities=12%  Similarity=0.120  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       223 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      +..+-++.+...++.|++....+.+.+|.+.+++..|.++++-+....-. ....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence            44555555555667777777777777777777777777777766544322 1225555444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.84  E-value=59  Score=31.84  Aligned_cols=152  Identities=16%  Similarity=0.042  Sum_probs=89.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHC-CCCCCH-------HHHHHHHH-HHHhhccHHHHHHHHHHchHhC-CCCCChhHHHHHH
Q 009967          315 GYAQNGRGEEAIEFFERMRIN-GIRPNG-------VTLLGLLW-ACNHTGLVEKGYSYFSQAKLED-PGMLKPEHYACMV  384 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~-~~~p~~-------~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~  384 (521)
                      +-.-.|++.+|++-+..|.+. .-.|..       .....++. .|...+-++.|+.-|..+.+.. ........-..+.
T Consensus       332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA  411 (629)
T KOG2300|consen  332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA  411 (629)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence            334578888888888888762 112331       12223333 3456677888888777665222 1112222334567


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCCCCHHHHHH--------HHHH--HHhcCCHHHHHHHHHHHHhcCCC------CchHHHH
Q 009967          385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKA--------LLGG--CQIHSNVELGEFAARRILALDPE------DVSSYVM  448 (521)
Q Consensus       385 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------l~~~--~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~  448 (521)
                      ..|.+.|+-+.--++++.+. .++..++..        ++.+  ....+++.+|...+.+.++....      ..-.+..
T Consensus       412 i~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL  490 (629)
T KOG2300|consen  412 ISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL  490 (629)
T ss_pred             HHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence            77888888888888888876 333221111        1122  34678999999999888875411      2234455


Q ss_pred             HHHHHHhcCChHHHHHHHH
Q 009967          449 LSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       449 l~~~~~~~g~~~~A~~~~~  467 (521)
                      |+..+...|+..++.....
T Consensus       491 Ls~v~lslgn~~es~nmvr  509 (629)
T KOG2300|consen  491 LSHVFLSLGNTVESRNMVR  509 (629)
T ss_pred             HHHHHHHhcchHHHHhccc
Confidence            6666777788777766544

>PRK12798 chemotaxis protein; Reviewed

Probab=80.39  E-value=57  Score=31.37  Aligned_cols=182  Identities=15%  Similarity=0.162  Sum_probs=114.3

Q ss_pred             cCCHHHHHHHHhhcCC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhccHH
Q 009967          288 CGSMEDSLLVFDKLTE----RNIVTWNAVICGYA-QNGRGEEAIEFFERMRINGIRPNG----VTLLGLLWACNHTGLVE  358 (521)
Q Consensus       288 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~  358 (521)
                      .|+..++.+.+..+..    +....|-.|+.+-. ...+...|+++|+...-.  -|..    .....-+......|+.+
T Consensus       125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~  202 (421)
T PRK12798        125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD  202 (421)
T ss_pred             cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence            5888899999888874    34456777766644 456899999999986542  3432    24455555667888988


Q ss_pred             HHHHHHHHchHhCCCCCChhHHH-HHHHHHHhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967          359 KGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSG---RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR  434 (521)
Q Consensus       359 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  434 (521)
                      ++..+-.+....+...|-..-|. .+...+.+.+   ..+....++..|.-.-....|-.+...-...|+.+.|.-.-++
T Consensus       203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~  282 (421)
T PRK12798        203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER  282 (421)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            87776666554555445444332 3333343333   4455566666665233345888888888889999999999999


Q ss_pred             HHhcCCC----CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          435 ILALDPE----DVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       435 ~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      +..+...    .......-+-+-.-..+.+++.+.+..+-.
T Consensus       283 A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~  323 (421)
T PRK12798        283 ALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDR  323 (421)
T ss_pred             HHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence            9886532    111222222223345667788877776443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	521
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 5e-11
 Identities = 86/593 (14%), Positives = 154/593 (25%), Gaps = 217/593 (36%)

Query: 22  SLAPNY--LIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTI 79
            L  NY  L+   K   ++   P++ T       + D+  + +QVF      NV      
Sbjct: 86  VLRINYKFLMSPIKTEQRQ---PSMMTRMYI--EQRDRLYNDNQVF---AKYNVS----- 132

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF-----GSVIPSSTALEDLNLGKQ----- 129
                +   Y +      R  LL +RP++        GS             GK      
Sbjct: 133 -----RLQPYLKL-----RQALLELRPAKNVLIDGVLGS-------------GKTWVALD 169

Query: 130 -LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN------PNVVSYTTMIC 182
              ++  +  +   +F        ++ L +      V E          PN  S +    
Sbjct: 170 VCLSYKVQCKMDFKIF--------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 183 GL-LKRERFEDALK-LFQEMPH-------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
            + L+    +  L+ L +  P+        NV   NA            +A N F     
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNA------------KAWNAF----- 262

Query: 234 EGLVPNHSTLPCAIIA----AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
                    L C I+           L    + H               + + S   K  
Sbjct: 263 --------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYL 311

Query: 290 SMEDSLL-------------VFDKLTERNIVTWNAVICGYAQNG--RGEEAIE------- 327
                 L             +  +     + TW+     +      +    IE       
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NWKHVNCDKLTTIIESSLNVLE 367

Query: 328 ------FFERMRINGIRPNGV----TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
                  F+R+    + P        LL L+W                     D  ++  
Sbjct: 368 PAEYRKMFDRL---SVFPPSAHIPTILLSLIW---------------FDVIKSDVMVV-- 407

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA--RRI 435
                +  L   S   K+ KE    +P                +   V+L    A  R I
Sbjct: 408 -----VNKLHKYSLVEKQPKESTISIP-------------SIYLELKVKLENEYALHRSI 449

Query: 436 L-------ALDPEDVS---------SYVM--LSNALSVAGKWDNVSNIR---REMKEKGM 474
           +         D +D+          S++   L N      +      +    R +++K  
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLEQK-- 506

Query: 475 TRVPGCSWIEIKS-----------KVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            R    +W    S           K ++     +   + + I   L    E +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 5e-06
 Identities = 65/447 (14%), Positives = 132/447 (29%), Gaps = 131/447 (29%)

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR-VFEDT------HNPNVV 175
           D   G+  + +   +    +VF  + + +   K   +++  + +           + + V
Sbjct: 8   DFETGEHQYQYKDIL----SVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSW--NAMIGGYSQTGRNEEA--------- 224
           S T  +   L  ++ E+ ++ F E   R    +  + +     Q                
Sbjct: 62  SGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 225 --VNLFIEM----------LREGLVPNHSTLPCAIIAAANIAALGM---GKSFHACAV-- 267
               +F +           LR+ L          +  A N+   G+   GK++ A  V  
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQAL--------LELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 268 --KFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
             K   K+D  +F     ++    C S E  L +  KL          +   +       
Sbjct: 173 SYKVQCKMDFKIF----WLNL-KNCNSPETVLEMLQKL-------LYQIDPNWTSRSDHS 220

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383
             I    ++RI+ I+     L  LL                              +  C+
Sbjct: 221 SNI----KLRIHSIQAE---LRRLL--------------------------KSKPYENCL 247

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI------HSNVELGEFAARRILA 437
           + L                   +     W A    C+I          +    A    ++
Sbjct: 248 LVL---------------LNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 438 LDPEDVSSYVMLSNALSVAGKWDNVS--NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG 495
           L  +  S  +      S+  K+ +    ++ RE+      R    S I    +  +  T 
Sbjct: 291 L--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRR--LSIIAESIRDGL-ATW 344

Query: 496 DRNHHMN-DEIYAVLRSCTEQIREFEL 521
           D   H+N D++  ++ S    +   E 
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEY 371

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 58.7 bits (140), Expect = 3e-09
 Identities = 15/136 (11%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTER-------NIVTWNAVICGYAQNGRGEEAIEFFER 331
            +          +  +  +      +        +  +NAV+ G+A+ G  +E +     
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           ++  G+ P+ ++    L                 +   ++   L+    A ++    R+ 
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

Query: 392 RFKEAKEFLYDLPFDP 407
             K   +        P
Sbjct: 251 VLKAVHKVKPTFSLPP 266

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 50.6 bits (119), Expect = 1e-06
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 11/136 (8%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT----HNPN 173
              L    +   L     +          + +L       S++              +  
Sbjct: 67  EPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQ 126

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEM-------PHRNVVSWNAMIGGYSQTGRNEEAVN 226
                      L  ++   A  L               +  +NA++ G+++ G  +E V 
Sbjct: 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186

Query: 227 LFIEMLREGLVPNHST 242
           +   +   GL P+  +
Sbjct: 187 VLFMVKDAGLTPDLLS 202

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 18/140 (12%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTER----NIVTWNAVICGYAQNGRGEEAIE- 327
           L + + N+++  +A+ G+ ++ + V   + +     +++++ A +    +  +    IE 
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
             E+M   G++   +    LL +      V K            P +  P + + ++  +
Sbjct: 223 CLEQMSQEGLKLQALFTAVLL-SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281

Query: 388 SRSGRFKEAKEFLYDLPFDP 407
                     +    L    
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQ 301

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 58/472 (12%), Positives = 115/472 (24%), Gaps = 53/472 (11%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEV 68
               +    + +   +   L      S     T +  T   +  S    F       +  
Sbjct: 20  NHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTD 79

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE-FTFGSVIPSSTALEDLNLG 127
                            Q  Y+ A ++  ++L +   P++ F    V          +  
Sbjct: 80  SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVY-----CCTGDYA 134

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +       +     +           +KL   + A  +  +T+                R
Sbjct: 135 RAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNP--------------FR 180

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGG--YSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           +  ++A KL  +     + +    + G  Y+     + A   + E L   +         
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFD 238

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-- 303
            +++   + A                K D     SL        S ED L   +      
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298

Query: 304 ----RNIVTWNAVICGYAQNGRGEEAIEFFER-MRINGIRPNGVTLLG-LLWACNHTGLV 357
               ++               R  + +    + + I+    +   L    L     +G  
Sbjct: 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH---ESGEK 355

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD--LPFDPGIGFWKA- 414
            K Y   +      P   K   +  +        +  EA+ + +      DP   F  A 
Sbjct: 356 NKLYLISNDLVDRHPE--KAVTWLAVGIYYLCVNKISEARRY-FSKSSTMDP--QFGPAW 410

Query: 415 -LLGGCQIHSNVELGEFAA-----RRILALDPEDVSSYVMLSNALSVAGKWD 460
                   HS    GE             L       Y+ L       G   
Sbjct: 411 IGFA----HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 53/406 (13%), Positives = 124/406 (30%), Gaps = 56/406 (13%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSE-FTFGSVIPSSTALEDLNLGKQLH-AWATKVGLQ 140
           +    +++ A   +   L+++ +  E F         TA E+ +L  +L+ +  +K    
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFE--DTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
               +    L+       +  A       +    +          L  R RF D L +  
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329

Query: 199 EM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254
           ++    P+ N+  +   +    ++G   +   +  +++     P         +A     
Sbjct: 330 KILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEK---AVTWLAVGIYY 383

Query: 255 ALGMGKSFHACAVKFLGK---LDVFVGNSLISF---YAKCGSMEDSLLVFDKLTE---RN 305
              + K   + A ++  K   +D   G + I F   +A  G  + ++  +          
Sbjct: 384 LC-VNK--ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

Query: 306 IVTWN--AVICGYAQNGRGEEAIEFFER-MRINGIRPNGVTLLGLL-WACNHTGLVEKGY 361
            + +    +   + Q G    A E+ +    +         LL  L     +   ++   
Sbjct: 441 HLPYLFLGMQ--HMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAFNKSDMQTAI 495

Query: 362 SYFSQA--KLEDPGMLKPEHYACMVDL---LSRSGRFKEAKEFLYD--LPFDP------- 407
           ++F  A   ++     +    A   +L     +   +  A +   +  L           
Sbjct: 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA-LNQGLLLSTNDANVHT 554

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            I                 L        LA+ P ++ +  +L  AL
Sbjct: 555 AIALVYLHKK------IPGLAITHLHESLAISPNEIMASDLLKRAL 594

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 49/310 (15%), Positives = 100/310 (32%), Gaps = 53/310 (17%)

Query: 184 LLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                 F+   KL   +    P  +       IG   +  +  E   L  +++   L P+
Sbjct: 32  HYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVD--LYPS 88

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGK---LDVFVGNSLISF---YAKCGSMED 293
           +   P +  A        M    +  A ++L K   L+   G + I++   +A     + 
Sbjct: 89  N---PVSWFAVGC--YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143

Query: 294 SLLVFDK---LTERNIVTWNAVICGYAQNGRGEEAIEFFER-MRINGIRPNGVTL---LG 346
           ++  +     L +   +    +   Y      + A  FF + + I    P    +   +G
Sbjct: 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVG 200

Query: 347 LLWACNHTGLVEKGYSYFSQA----KLEDPGMLKPEHYACMVDL---LSRSGRFKEAKEF 399
           +       G  +    +F  A    K     +   +    + +L     +  ++ EA ++
Sbjct: 201 V--VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 400 LYD--LPFDP-------GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
            +   L   P        IG+  +L+G      N E         L L  +D  S  ML 
Sbjct: 259 -HRQALVLIPQNASTYSAIGYIHSLMG------NFENAVDYFHTALGLRRDDTFSVTMLG 311

Query: 451 NALSVAGKWD 460
           + + +     
Sbjct: 312 HCIEMYIGDS 321

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 44/346 (12%), Positives = 85/346 (24%), Gaps = 68/346 (19%)

Query: 152 LYIKLSSIEEATRVFEDTH--NPN-VVSYTTMICGLLKRERFEDALKLFQ---EMPHRNV 205
               L +++    V    H   P  VV+  +   G    E  +  L +      +    V
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQV 174

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           V+  +  GG       +  + +  +     L P        ++A A+          +  
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQ------VVAIAS----------NGG 216

Query: 266 AVKFLGKLD----------------VFVGNSLISFYAKCGSMEDSLLVFDK---LTERNI 306
             + L  +                 V    S         +++  L V  +   LT + +
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 276

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFS 365
           V   +   G       +  +    +   +G+ P   V +            V++      
Sbjct: 277 VAIASNSGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 334

Query: 366 QAKLEDPGMLKPEH---YACMVDLLSRSGRFKEA-KEFLYDLPFDPGIGFWKAL--LGGC 419
           QA       L P+     A            +             P      A+   GG 
Sbjct: 335 QA-HG----LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE--QVVAIASNGGG 387

Query: 420 QIHSNVELGEFAA-----RRILALDPEDVSSYVMLSNALSVAGKWD 460
           +      L           +   L PE V +               
Sbjct: 388 K----QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 429

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 47/333 (14%), Positives = 89/333 (26%), Gaps = 42/333 (12%)

Query: 152 LYIKLSSIEEATRVFEDTH--NPN-VVSYTTMICGLLKRERFEDALKLFQEMPH---RNV 205
               L +++    V    H   P  VV+  +   G    E  +  L +  +      + V
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 208

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI-AALGMGKSFHA 264
           V+  +  GG       +  + +  +     L P       AI +      AL   +    
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVV---AIASNGGGKQALETVQRLLP 263

Query: 265 C---AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK---LTERNIVTWNAVICGYAQ 318
               A     +  V + ++     A   +++  L V  +   LT + +V   +   G   
Sbjct: 264 VLCQAHGLTPQQVVAIASNSGGKQAL-ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA 322

Query: 319 NGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
               +  +    +   +G+ P   V +            V++      QA       L P
Sbjct: 323 LETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA-HG----LTP 375

Query: 378 EH---YACMVDLLSRSGRFKEAKEFLY-DLPFDPG-IGFWKALLGGCQIHSNVELGEFAA 432
           E     A            +     L       P  +    +  GG Q      L     
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ-----ALETVQR 430

Query: 433 -----RRILALDPEDVSSYVMLSNALSVAGKWD 460
                 +   L P+ V +               
Sbjct: 431 LLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 50/324 (15%), Positives = 95/324 (29%), Gaps = 91/324 (28%)

Query: 184 LLKRERFEDALKLFQ---EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
             +  R + +        +       +++ +   Y + G+ +EA+  +   LR  L P+ 
Sbjct: 43  HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDF 100

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLD----------------VFVGNSLISF 284
                          + +  +  A      G ++                  V + L + 
Sbjct: 101 ID-----------GYINLAAALVA-----AGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144

Query: 285 YAKCGSMEDSLLVFDKLTERN---IVTWN--AVICGYAQNGRGEEAIEFFERMRINGIRP 339
               G +E++   + K  E      V W+    +  +   G    AI  FE+  +  + P
Sbjct: 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV--FNAQGEIWLAIHHFEKA-VT-LDP 200

Query: 340 N--------GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH---YACMVDLLS 388
           N        G  L           + ++  + + +A L     L P H   +  +  +  
Sbjct: 201 NFLDAYINLGNVLKEA-------RIFDRAVAAYLRA-LS----LSPNHAVVHGNLACVYY 248

Query: 389 RSGRFKEAKEFLYD--LPFDPGIGFWKALLGGCQIHSN-----VELGEFAA-----RRIL 436
             G    A +  Y   +   P   F  A       + N      E G  A         L
Sbjct: 249 EQGLIDLAIDT-YRRAIELQP--HFPDA-------YCNLANALKEKGSVAEAEDCYNTAL 298

Query: 437 ALDPEDVSSYVMLSNALSVAGKWD 460
            L P    S   L+N     G  +
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIE 322

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 43/307 (14%), Positives = 88/307 (28%), Gaps = 91/307 (29%)

Query: 184 LLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             +   FE A +   ++    P  N      +   + Q  R + + +     ++    P 
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPL 65

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                                   A A   LG +           Y + G +++++  + 
Sbjct: 66  -----------------------LAEAYSNLGNV-----------YKERGQLQEAIEHYR 91

Query: 300 KLTERN---IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN--------GVTLLGLL 348
                    I  +  +       G  E A++ +    +    P+        G  L  L 
Sbjct: 92  HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-LQ-YNPDLYCVRSDLGNLLKAL- 148

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEH---YACMVDLLSRSGRFKEAKEFLYD--L 403
                 G +E+  + + +A +E     +P     ++ +  + +  G    A    ++  +
Sbjct: 149 ------GRLEEAKACYLKA-IE----TQPNFAVAWSNLGCVFNAQGEIWLAIH-HFEKAV 196

Query: 404 PFDPGIGFWKALLGGCQIHSN-----VELGEFAA-----RRILALDPEDVSSYVMLSNAL 453
             DP   F  A       + N      E   F        R L+L P     +  L+   
Sbjct: 197 TLDP--NFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 454 SVAGKWD 460
              G  D
Sbjct: 248 YEQGLID 254

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 52/345 (15%), Positives = 108/345 (31%), Gaps = 100/345 (28%)

Query: 152 LYIKLSSIEEATRVFED--THNPNVV-SYTTMICGLLKRERFEDALKLFQEM----PHRN 204
           +Y +   ++EA   +       P+ +  Y  +   L+     E A++ +       P   
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-L 134

Query: 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
               + +       GR EEA   +++ +     PN +            A   +G  F+A
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAV-----------AWSNLGCVFNA 181

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWN--AVICGYAQN 319
                 G++                    ++  F+K        +  +     +    + 
Sbjct: 182 -----QGEIW------------------LAIHHFEKAVTLDPNFLDAYINLGNV--LKEA 216

Query: 320 GRGEEAIEFFER-MRINGIRPN--------GVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
              + A+  + R + ++   PN                      GL++     + +A +E
Sbjct: 217 RIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQ-------GLIDLAIDTYRRA-IE 265

Query: 371 DPGMLKPEH---YACMVDLLSRSGRFKEAKEFLYD--LPFDPGIGFWKALLGGCQIHSN- 424
               L+P     Y  + + L   G   EA++  Y+  L   P      +        +N 
Sbjct: 266 ----LQPHFPDAYCNLANALKEKGSVAEAEDC-YNTALRLCPT--HADS-------LNNL 311

Query: 425 ----VELGEFAA-----RRILALDPEDVSSYVMLSNALSVAGKWD 460
                E G         R+ L + PE  +++  L++ L   GK  
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 38/307 (12%), Positives = 90/307 (29%), Gaps = 60/307 (19%)

Query: 184 LLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
            L   + + AL    ++          +         + G+ +EA + F ++L+    P+
Sbjct: 47  FLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLK--SNPS 103

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                    A + +      +   + A+                          ++   D
Sbjct: 104 EQE---EKEAESQLVKADEMQRLRSQALD----------------AFDGADYTAAITFLD 144

Query: 300 KLTE---RNIVTWNAVICGYAQNGRGEEAIEFFER-MRINGIRPNGVTLLGLLWACNHTG 355
           K+ E    +          + + G   +AI   +   ++          +  L+     G
Sbjct: 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY--QLG 202

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDL---------------LSRSGRFKEAKEFL 400
             E   S   +  L+    L  +H  C                   L R GR+ +A    
Sbjct: 203 DHELSLSEVREC-LK----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS-K 256

Query: 401 YD--LPFDPGIGFWKALLGGCQIHSNVELGEFAA-----RRILALDPEDVSSYVMLSNAL 453
           Y+  +  +P +  +         H   +  +          +L ++P++V++    + A 
Sbjct: 257 YESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316

Query: 454 SVAGKWD 460
            +   +D
Sbjct: 317 LIEEMYD 323

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 25/210 (11%), Positives = 56/210 (26%), Gaps = 51/210 (24%)

Query: 285 YAKCGSMEDSLLVFDKLTE---RNIVTWN--AVICGYAQNGRGEEAIEFFER-MRINGIR 338
               G + D+L  F    +    N + +   A +  +   G+ + A+    + + +    
Sbjct: 13  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV--FLAMGKSKAALPDLTKVIALK--- 67

Query: 339 PN--------GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG-------------MLKP 377
            +        G  LL         G +++    F +    +P                + 
Sbjct: 68  MDFTAARLQRGHLLLKQ-------GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYD--LPFDPGIGFWKALLGGCQIHSNVELGEF----- 430
           +              +  A     D  L         + L   C I    + GE      
Sbjct: 121 QRLRSQALDAFDGADYTAA-ITFLDKILEVCVWDAELRELRAECFI----KEGEPRKAIS 175

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +    L  ++  ++  +S      G  +
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHE 205

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 320 GRGEEAIEFFER-MRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
           G   +A+ ++E+ +       +     LGL       G   K  +  +    + P     
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQ 61

Query: 378 EHYACMVDLLSRSGRFKEAKEFLY----DLPFDPGIG-FWKAL 415
                   +L   GR+++  E L     +   D  I  + +A+
Sbjct: 62  ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 7/149 (4%)

Query: 316 YAQNGRGEEAIEFFER-MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
             + G  EEA+  + + + +        + L         G +++   ++ +A    P  
Sbjct: 19  KREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--VLQQQGKLQEALMHYKEAIRISPTF 76

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGCQIHSNVELGEFAA 432
              + Y+ M + L      + A +     +  +P        L    +   N+     + 
Sbjct: 77  --ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDN 461
           R  L L P+   +Y  L++ L +   W +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTD 163

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 34/305 (11%), Positives = 73/305 (23%), Gaps = 75/305 (24%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           I EA RV   +   +V     +    L + ++   L   +      + +        +  
Sbjct: 19  INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH 78

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
            R +  V      +   +   +      ++ AA+I                         
Sbjct: 79  SRRDAIVAELDREMSRSVDVTN---TTFLLMAASI------------------------- 110

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
                 Y    + + +L    +      +     I    +  R + A +  ++M+     
Sbjct: 111 ------YFYDQNPDAALRTLHQGDSLECMAMTVQI--LLKLDRLDLARKELKKMQD--QD 160

Query: 339 P-NGVTLLGLLWACNHTGL--VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
               +T L   W     G   ++  Y  F +   +                    GR++ 
Sbjct: 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--TLLLLNGQAACHMAQGRWEA 218

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455
           A+  L                                +  L  D     + + L      
Sbjct: 219 AEGVL--------------------------------QEALDKDSGHPETLINLVVLSQH 246

Query: 456 AGKWD 460
            GK  
Sbjct: 247 LGKPP 251

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
                         A          E    + + L    R ++A+  L  +P       +
Sbjct: 129 QESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186

Query: 413 KALLGGCQIHSNV-ELGEFAA-RRILALDPEDVSSYVMLSNALSVAGKWD 460
           + L+   ++     +  E    ++ +A +PED +    L+  L   G+ +
Sbjct: 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNE 236

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
                 E     + +      D L  + +F+ A+E L  +P +     +K+L+   ++H 
Sbjct: 29  IQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86

Query: 424 NVELGEFAA--RRILALDPEDVSSYVMLSNALSVAGKWD 460
                       + LA +P++      L+   +  G+ +
Sbjct: 87  QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	521
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.79
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.66
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.49
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.45
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.45
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.42
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.4
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.39
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.33
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.28
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.22
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.16
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.16
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.14
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.09
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.06
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.0
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.95
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.9
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.89
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.87
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.87
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.84
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.84
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.81
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.77
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.71
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.64
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.61
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.57
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.56
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.55
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.5
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.5
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.46
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.46
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.45
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.41
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.39
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.34
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.32
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.3
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.29
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.28
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.27
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.21
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.14
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.12
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.1
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.05
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.0
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.99
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.97
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.95
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.89
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.82
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.68
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.66
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.58
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.56
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.42
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.31
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.3
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.28
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.24
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.21
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.2
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.12
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.85
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.79
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.62
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.59
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.53
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.36
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.98
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.88
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.71
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.49
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.45
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.41
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.16
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.57
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.25
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.84
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.45
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.41
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.54
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	91.67
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.5
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.45
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.4
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.19
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.01
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.04
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.93
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.01
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.49
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	88.03
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.82
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.55
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.48
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.32
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	86.26
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	86.05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	86.04
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	85.99
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	85.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.04
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	82.88
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	82.56
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	82.42
2p58_C	116	Putative type III secretion protein YSCG; type III	81.84
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.99
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	80.92
2p58_C	116	Putative type III secretion protein YSCG; type III	80.46
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.34

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-38  Score=324.90  Aligned_cols=418  Identities=11%  Similarity=0.015  Sum_probs=352.0

Q ss_pred             hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      +++.|.+.|++++|..+|+++.  .|+..+|..++..|.+.|++++|..+|+++..  .+++..+++.++.+|.+.|+++
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~  167 (597)
T 2xpi_A           90 WRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQ  167 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHH
Confidence            7778888888888888887764  36667777888888888888888888887754  3577778888888888888888


Q ss_pred             HHHHHHHHHHHh---------------CCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CC-chhHHHH-------
Q 009967          126 LGKQLHAWATKV---------------GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PN-VVSYTTM-------  180 (521)
Q Consensus       126 ~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l-------  180 (521)
                      +|.++|+++...               +.+++..+|+.++.+|.+.|++++|.+.|+++.+  |+ ...+..+       
T Consensus       168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  247 (597)
T 2xpi_A          168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLT  247 (597)
T ss_dssp             HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSC
T ss_pred             HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhccc
Confidence            888888742211               2233577888888888888888888888887764  32 2222222       


Q ss_pred             -------------------------------HHHHHcCCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHH
Q 009967          181 -------------------------------ICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNL  227 (521)
Q Consensus       181 -------------------------------i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~  227 (521)
                                                     +..|.+.|++++|.++|+++.+  ++..+|+.++.+|.+.|++++|.++
T Consensus       248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  327 (597)
T 2xpi_A          248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI  327 (597)
T ss_dssp             HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence                                           3345566788888888888877  7889999999999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 009967          228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---R  304 (521)
Q Consensus       228 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~  304 (521)
                      |+++...+ +.+..++..++.++...|+++.|..+++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+   .
T Consensus       328 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  405 (597)
T 2xpi_A          328 TTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ  405 (597)
T ss_dssp             HHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            99999865 347788999999999999999999999999976543 788999999999999999999999998864   5


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967          305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV  384 (521)
Q Consensus       305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  384 (521)
                      +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|...|++++|.++|+++....+  .++.+|..++
T Consensus       406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~  482 (597)
T 2xpi_A          406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLLLNELG  482 (597)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHH
Confidence            67799999999999999999999999999864 45778999999999999999999999999986654  4678899999


Q ss_pred             HHHHhcCCHHHHHHHHhhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          385 DLLSRSGRFKEAKEFLYDL-------PFDPG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       385 ~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      .+|.+.|++++|.++|+++       +..|+  ..+|..++.+|...|++++|++.|+++.+.+|+++.+|..++.+|.+
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  562 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH  562 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999886       34677  77999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhC
Q 009967          456 AGKWDNVSNIRREMKEK  472 (521)
Q Consensus       456 ~g~~~~A~~~~~~m~~~  472 (521)
                      .|++++|.++++++.+.
T Consensus       563 ~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          563 KKIPGLAITHLHESLAI  579 (597)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhc
Confidence            99999999999998864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-36  Score=308.03  Aligned_cols=403  Identities=11%  Similarity=0.021  Sum_probs=354.9

Q ss_pred             hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHC---------------CCCCChhh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL---------------NIRPSEFT  110 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~  110 (521)
                      ++.+|.+.|++++|..+|+++.  .++..+|+.++..|.+.|++++|+++|+++...               +.+++..+
T Consensus       123 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (597)
T 2xpi_A          123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM  202 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHH
Confidence            8999999999999999999884  578899999999999999999999999954321               22345789


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHH--------------------------------------HHHH
Q 009967          111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA--------------------------------------ILDL  152 (521)
Q Consensus       111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~  152 (521)
                      |+.++.+|.+.|++++|.++|+++.+.+ +.+...+..                                      ++..
T Consensus       203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  281 (597)
T 2xpi_A          203 CYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK  281 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875 223333332                                      2556


Q ss_pred             HHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 009967          153 YIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNL  227 (521)
Q Consensus       153 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~  227 (521)
                      |.+.|++++|.++|+++.+  ++..+|..++..|.+.|++++|.++|+++.+   .+..+|+.++.++.+.|++++|..+
T Consensus       282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  361 (597)
T 2xpi_A          282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI  361 (597)
T ss_dssp             TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred             HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6678999999999999988  7889999999999999999999999999864   4678899999999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 009967          228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---R  304 (521)
Q Consensus       228 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~  304 (521)
                      ++++.... +.+..++..+...|.+.|++++|..+++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+   .
T Consensus       362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  439 (597)
T 2xpi_A          362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG  439 (597)
T ss_dssp             HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99998653 456788999999999999999999999999987654 788999999999999999999999998864   5


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhC---CCCCC--hhH
Q 009967          305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED---PGMLK--PEH  379 (521)
Q Consensus       305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~  379 (521)
                      +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++....   +..|+  ..+
T Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~  518 (597)
T 2xpi_A          440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT  518 (597)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence            77899999999999999999999999998854 4478899999999999999999999999997442   55677  679


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      |..++.+|.+.|++++|.++++++. . +.+..+|..++.+|...|++++|.+.|+++++.+|+++.++..++.+|.
T Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9999999999999999999999853 2 4478899999999999999999999999999999999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.8e-28  Score=237.27  Aligned_cols=372  Identities=12%  Similarity=0.085  Sum_probs=284.6

Q ss_pred             HHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967           80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI  159 (521)
Q Consensus        80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  159 (521)
                      ...+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+..+|.+.|++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            445666777777777777776643 2334445555555667777777777777776653 55666777777777777777


Q ss_pred             HHHHHHhhcCCC--CC-chhHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967          160 EEATRVFEDTHN--PN-VVSYTTMICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLR  233 (521)
Q Consensus       160 ~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  233 (521)
                      ++|...|+++..  |+ ..+|..+..++.+.|++++|.+.|+++.+  | +...+..+...+...|++++|.+.|+++..
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            777777777654  33 34567777777777777777777776653  3 345666777777778888888888888776


Q ss_pred             CCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHH
Q 009967          234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWN  310 (521)
Q Consensus       234 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~  310 (521)
                      .. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+..++...|++++|...|++..+   .+..++.
T Consensus       164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (388)
T 1w3b_A          164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence            43 223466777777778888888888888888776654 677788888899999999999999987764   3567888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc
Q 009967          311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS  390 (521)
Q Consensus       311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  390 (521)
                      .+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++....+  .+..++..+..++.+.
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHc
Confidence            99999999999999999999998853 23466888899999999999999999999876654  5677899999999999


Q ss_pred             CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          391 GRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       391 g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      |++++|.+.++++. ..| +..++..+...+...|++++|+..|+++++..|+++.+|..++..+...|+
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999998853 344 467889999999999999999999999999999999999999998877664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.8e-27  Score=230.15  Aligned_cols=350  Identities=13%  Similarity=0.087  Sum_probs=307.2

Q ss_pred             HHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHH
Q 009967          115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFE  191 (521)
Q Consensus       115 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~  191 (521)
                      ...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+   .+..+|..+...+.+.|+++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            445667899999999999998865 55667778888899999999999999988765   45678999999999999999


Q ss_pred             HHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhcchHHHHHHHHHHH
Q 009967          192 DALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-STLPCAIIAAANIAALGMGKSFHACAV  267 (521)
Q Consensus       192 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~  267 (521)
                      +|+..|+++.+  | +..+|..+..++.+.|++++|.+.|+++...+  |+. ..+..+...+...|+++.|...+..+.
T Consensus        85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999998764  3 56789999999999999999999999999854  654 455677788888999999999999999


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009967          268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL  344 (521)
Q Consensus       268 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~  344 (521)
                      +..+. +..++..+..++.+.|++++|...|+++.+   .+...|..+...+...|++++|...+++..... +.+..++
T Consensus       163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  240 (388)
T 1w3b_A          163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH  240 (388)
T ss_dssp             HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence            88654 678899999999999999999999999874   345688999999999999999999999988753 2356788


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIH  422 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~  422 (521)
                      ..+..++...|++++|...|+++....+  .++.++..+..++.+.|++++|.+.++++.  .+++..++..+...+...
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence            9999999999999999999999975544  356789999999999999999999999853  256788999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      |++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=5.7e-28  Score=237.91  Aligned_cols=183  Identities=13%  Similarity=0.129  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc---------chHHHHHHHHHHHHcCCCCChh
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA---------ALGMGKSFHACAVKFLGKLDVF  276 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~  276 (521)
                      ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+         .++.|.++|++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            3577788888888888888888888888888888888888888887654         3677888888888888888888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN  352 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  352 (521)
                      +|++++.+|++.|++++|.++|++|.+    ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            888888888888888888888888863    7888888888888888888888888888888888888888888888888


Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR  389 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (521)
                      +.|++++|.+++++|. ..+..|+..||+.++..|..
T Consensus       187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence            8888888888888885 77788888888888887765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=8.3e-28  Score=236.75  Aligned_cols=213  Identities=13%  Similarity=0.038  Sum_probs=173.6

Q ss_pred             HHHHHHHHHhHHCCCCCCh-hhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 009967           90 EEAIYLFSRMLLLNIRPSE-FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED  168 (521)
Q Consensus        90 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  168 (521)
                      ..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+...++      
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------   80 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------   80 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence            3455667777777766554 457888999999999999999999999999999999999999999887654221      


Q ss_pred             CCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009967          169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII  248 (521)
Q Consensus       169 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  248 (521)
                                                                     .+.+..++|.++|++|...|+.||..||+++|.
T Consensus        81 -----------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~  113 (501)
T 4g26_A           81 -----------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR  113 (501)
T ss_dssp             -----------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             -----------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence                                                           123456788889999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHH
Q 009967          249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEE  324 (521)
Q Consensus       249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~  324 (521)
                      +|++.|+++.|..++++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+    ||..+|++||.+|++.|+.++
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~  193 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK  193 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999863    899999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967          325 AIEFFERMRINGIRPNGVTLLGLLWACNHTG  355 (521)
Q Consensus       325 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  355 (521)
                      |.+++++|.+.|..|+..||+.++..|+..+
T Consensus       194 A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          194 VYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999887643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.8e-24  Score=215.73  Aligned_cols=264  Identities=13%  Similarity=-0.040  Sum_probs=222.7

Q ss_pred             hhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCCC--------ChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967          205 VVSWNAMIGGYSQ---TGRNEEAVNLFIEMLR-----EGLVP--------NHSTLPCAIIAAANIAALGMGKSFHACAVK  268 (521)
Q Consensus       205 ~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  268 (521)
                      ...+......+..   .|++++|...|+++..     ....|        +..++..+..++...|+++.|...++.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4455555555555   8999999999999987     32122        235667788889999999999999999999


Q ss_pred             cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009967          269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL  345 (521)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~  345 (521)
                      ..+.  ...+..+..++...|++++|...|+++.+   .+...|..+...+...|++++|...++++.+.. +.+..++.
T Consensus       266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  342 (514)
T 2gw1_A          266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI  342 (514)
T ss_dssp             HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred             hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence            8766  88888999999999999999999998865   456789999999999999999999999998854 33566888


Q ss_pred             HHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHH
Q 009967          346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPG----IGFWKALLG  417 (521)
Q Consensus       346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~  417 (521)
                      .+...+...|++++|...++++....+  .++..+..+..+|.+.|++++|...++++.    ..++    ...+..+..
T Consensus       343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  420 (514)
T 2gw1_A          343 QLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT  420 (514)
T ss_dssp             HHHHHTTTTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            888999999999999999999976654  356788899999999999999999998752    1222    448888999


Q ss_pred             HHHh---cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          418 GCQI---HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       418 ~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      .+..   .|++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+..
T Consensus       421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            9999   9999999999999999999999999999999999999999999999987653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-24  Score=218.14  Aligned_cols=396  Identities=10%  Similarity=-0.028  Sum_probs=314.9

Q ss_pred             hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN  125 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  125 (521)
                      +...+.+.|++++|++.|+++.  .|+...|..+...+.+.|++++|+..|+++.+.+ +.+...+..+..++...|+++
T Consensus        12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~   90 (514)
T 2gw1_A           12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA   90 (514)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence            4467778899999999998765  4788889999999999999999999999998865 455678888899999999999


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHh--------------------------------------h
Q 009967          126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF--------------------------------------E  167 (521)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------------------------------------~  167 (521)
                      +|...|+.+.+.+ +++......++..+........+.+.+                                      .
T Consensus        91 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
T 2gw1_A           91 DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG  169 (514)
T ss_dssp             HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence            9999999998876 334333333443333322211111111                                      1


Q ss_pred             cCCC---------C-CchhHHHHHHHHHc---CCCHHHHHHHHhhCCC----------------C-ChhHHHHHHHHHHh
Q 009967          168 DTHN---------P-NVVSYTTMICGLLK---RERFEDALKLFQEMPH----------------R-NVVSWNAMIGGYSQ  217 (521)
Q Consensus       168 ~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~  217 (521)
                      ....         | +...+......+..   .|++++|+..|+++.+                + +..++..+...+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (514)
T 2gw1_A          170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL  249 (514)
T ss_dssp             TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence            1110         1 13344444444554   8999999999988654                1 34678889999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967          218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV  297 (521)
Q Consensus       218 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  297 (521)
                      .|++++|...|+++...+  |+...+..+..++...|+++.|...++.+.+..+. +..++..+..++...|++++|...
T Consensus       250 ~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999999999865  55778888999999999999999999999987654 677889999999999999999999


Q ss_pred             HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967          298 FDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM  374 (521)
Q Consensus       298 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  374 (521)
                      |+++.+   .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++....+..
T Consensus       327 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          327 FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            998863   456789999999999999999999999998753 3356788888999999999999999999987555433


Q ss_pred             CC----hhHHHHHHHHHHh---cCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967          375 LK----PEHYACMVDLLSR---SGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS  445 (521)
Q Consensus       375 ~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  445 (521)
                      ++    ...+..+..++..   .|++++|...+++.. . +.+..++..+...+...|++++|...|+++++.+|+++..
T Consensus       406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence            33    3489999999999   999999999998853 2 4457788999999999999999999999999999988887


Q ss_pred             HHHH
Q 009967          446 YVML  449 (521)
Q Consensus       446 ~~~l  449 (521)
                      +..+
T Consensus       486 ~~~~  489 (514)
T 2gw1_A          486 LQAI  489 (514)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.93  E-value=1.9e-23  Score=211.02  Aligned_cols=413  Identities=12%  Similarity=0.055  Sum_probs=282.1

Q ss_pred             hhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL  124 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  124 (521)
                      +...+.+.|++++|++.|++..   +.+...|..+...+.+.|++++|++.|+++.+.+ +.+...+..+..++...|++
T Consensus        31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~  109 (537)
T 3fp2_A           31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF  109 (537)
T ss_dssp             HHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence            3445555666666666665543   2244555556666666666666666666665543 33445555555555566666


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC------CCchhHHHHHHHHHcCCCHHHHHHHHh
Q 009967          125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN------PNVVSYTTMICGLLKRERFEDALKLFQ  198 (521)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~  198 (521)
                      ++|...|+ ...  ..|+..  ...+..+...+....|...++++..      +........+..+....+.+.+...+.
T Consensus       110 ~~A~~~~~-~~~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (537)
T 3fp2_A          110 TDAMFDLS-VLS--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN  184 (537)
T ss_dssp             HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred             HHHHHHHH-HHh--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence            66666654 221  112211  1122333334444555555555543      111122333444555566666666655


Q ss_pred             hCCCCChh---HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhhcchHHH
Q 009967          199 EMPHRNVV---SWNAMIGGYSQ--------TGRNEEAVNLFIEMLREGLVPNH--------STLPCAIIAAANIAALGMG  259 (521)
Q Consensus       199 ~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a  259 (521)
                      .....+..   ....+...+..        .|++++|..+|+++.+..  |+.        .++..+...+...|+++.|
T Consensus       185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  262 (537)
T 3fp2_A          185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDA  262 (537)
T ss_dssp             CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence            55543322   33333333322        247899999999988754  542        2455666778888999999


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009967          260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRING  336 (521)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~  336 (521)
                      ...+..+.+..+.  ...+..+..++...|++++|...|+++.+   .+..+|..+...+...|++++|...++++.+..
T Consensus       263 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  340 (537)
T 3fp2_A          263 QVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN  340 (537)
T ss_dssp             HHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            9999999987654  77888899999999999999999998864   456789999999999999999999999998853


Q ss_pred             CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCC
Q 009967          337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--------FDPG  408 (521)
Q Consensus       337 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~  408 (521)
                       +.+...+..+..++...|++++|...++++....+  .+...+..+..++...|++++|.+.+++..        ....
T Consensus       341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  417 (537)
T 3fp2_A          341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG  417 (537)
T ss_dssp             -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence             23456888888999999999999999999986654  456688899999999999999999998742        1122


Q ss_pred             HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          409 IGFWKALLGGCQIH----------SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       409 ~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ...+..+...+...          |++++|+..|+++++..|+++.++..++.+|.+.|++++|...+++..+..
T Consensus       418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            23345556667777          999999999999999999999999999999999999999999999987654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=4.9e-23  Score=203.13  Aligned_cols=329  Identities=11%  Similarity=0.017  Sum_probs=229.2

Q ss_pred             ChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHc
Q 009967          107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK  186 (521)
Q Consensus       107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~  186 (521)
                      +...+..+...+...|++++|..+|+.+.+.. +.+...+..+..+|...|++++|...|+++.+.              
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------   89 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------------   89 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence            34445555555555555555555555555542 334555555555555555555555555554320              


Q ss_pred             CCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHH------------HHHH
Q 009967          187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH----STLPCA------------IIAA  250 (521)
Q Consensus       187 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l~~~  250 (521)
                                    ...+..++..++.+|.+.|++++|...|+++...+  |+.    ..+..+            ...+
T Consensus        90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  153 (450)
T 2y4t_A           90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNA  153 (450)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          01234455555555555666666666665555432  332    222222            3346


Q ss_pred             HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 009967          251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIE  327 (521)
Q Consensus       251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~  327 (521)
                      ...|+++.|...++.+.+..+. +..++..+..+|.+.|++++|.+.|+++.+   .+..+|..++..|...|++++|..
T Consensus       154 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  232 (450)
T 2y4t_A          154 FGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS  232 (450)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            6677777777777777766543 677788888888889999999888888764   567788889999999999999999


Q ss_pred             HHHHHHHCCCCCCH-HHHHHH------------HHHHHhhccHHHHHHHHHHchHhCCCCCC--hhHHHHHHHHHHhcCC
Q 009967          328 FFERMRINGIRPNG-VTLLGL------------LWACNHTGLVEKGYSYFSQAKLEDPGMLK--PEHYACMVDLLSRSGR  392 (521)
Q Consensus       328 ~~~~m~~~~~~p~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~  392 (521)
                      .|+++...  .|+. ..+..+            ...+...|++++|...|+++....+..+.  ...+..++.++.+.|+
T Consensus       233 ~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~  310 (450)
T 2y4t_A          233 EVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK  310 (450)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence            99998864  3443 344333            77889999999999999999865543222  3478889999999999


Q ss_pred             HHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH------------HHhcC-
Q 009967          393 FKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA------------LSVAG-  457 (521)
Q Consensus       393 ~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-  457 (521)
                      +++|...++++. . +.+...|..++.+|...|++++|...++++++..|+++.++..++.+            |...| 
T Consensus       311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~  390 (450)
T 2y4t_A          311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV  390 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence            999999999853 3 44678999999999999999999999999999999999999999844            44445 


Q ss_pred             ----ChHHHHHHHHHH
Q 009967          458 ----KWDNVSNIRREM  469 (521)
Q Consensus       458 ----~~~~A~~~~~~m  469 (521)
                          +.+++.+.++++
T Consensus       391 ~~~~~~~~~~~~y~~~  406 (450)
T 2y4t_A          391 KRNAKKQEIIKAYRKL  406 (450)
T ss_dssp             STTCCTTHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHHH
Confidence                556777777763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.9e-22  Score=198.93  Aligned_cols=364  Identities=11%  Similarity=0.022  Sum_probs=247.2

Q ss_pred             CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 009967           72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD  151 (521)
Q Consensus        72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  151 (521)
                      +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            56788999999999999999999999999764 5578889999999999999999999999999976 556888999999


Q ss_pred             HHHcCCCHHHHHHHhhcCCC--CC-c---hhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 009967          152 LYIKLSSIEEATRVFEDTHN--PN-V---VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV  225 (521)
Q Consensus       152 ~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  225 (521)
                      +|...|++++|...|+++.+  |+ .   ..+..++..+.                   ...+..+...+...|++++|+
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE-------------------MQRLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-------------------HHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999876  33 2   45555544321                   112233344455566666666


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 009967          226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--  303 (521)
Q Consensus       226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  303 (521)
                      ..|+++.... +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..+|...|++++|...|+++.+  
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            6666655532 223445555556666666666666666665554332 456666666666666777777666666643  


Q ss_pred             C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhhccHHHHHHHHH
Q 009967          304 R-NIVTWNAV------------ICGYAQNGRGEEAIEFFERMRINGIRPN-----GVTLLGLLWACNHTGLVEKGYSYFS  365 (521)
Q Consensus       304 ~-~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~  365 (521)
                      | +...+..+            ...+...|++++|...|+++.+.  .|+     ...+..+..++.+.|++++|...++
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            2 22333333            67777788888888888887763  344     3356677777788888888888888


Q ss_pred             HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHH
Q 009967          366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGG------------CQIHS-----NVE  426 (521)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~------------~~~~g-----~~~  426 (521)
                      ++....+  .+...|..+..+|...|++++|...+++. ...|+ ...+..+..+            |...|     +.+
T Consensus       320 ~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~  397 (450)
T 2y4t_A          320 EVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ  397 (450)
T ss_dssp             HHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred             HHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence            7764443  35667778888888888888888888764 33444 4455555422            33334     667


Q ss_pred             HHHHHHHH-HHhcCCCCc----------hHHHHHHHHHHhcCChHHH
Q 009967          427 LGEFAARR-ILALDPEDV----------SSYVMLSNALSVAGKWDNV  462 (521)
Q Consensus       427 ~A~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A  462 (521)
                      ++.+.+++ ++...|++.          ..+..+..+|...|+.+.+
T Consensus       398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            78888886 666777532          2455566666666655443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1.7e-21  Score=196.57  Aligned_cols=411  Identities=9%  Similarity=-0.031  Sum_probs=307.4

Q ss_pred             CCCCccchHHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHH
Q 009967           24 APNYLIETQKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLF   96 (521)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~   96 (521)
                      ..+....+...+..++...--.+.    +..+|.+.|++++|++.|++..   +.+..+|..+...+...|++++|+..|
T Consensus        37 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  116 (537)
T 3fp2_A           37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL  116 (537)
T ss_dssp             HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345566666666666653301222    8899999999999999999864   345678899999999999999999999


Q ss_pred             HHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh------CCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 009967           97 SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV------GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH  170 (521)
Q Consensus        97 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  170 (521)
                      +.+. .  .|+...  ..+..+...+....+...++.+.+.      ...|+.    ..+..+....+.+.+...+....
T Consensus       117 ~~~~-~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  187 (537)
T 3fp2_A          117 SVLS-L--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSS  187 (537)
T ss_dssp             HHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCC
T ss_pred             HHHh-c--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHHHHhhcc
Confidence            7443 2  233221  1222333445567788888887553      122333    33445667788888888887776


Q ss_pred             CCCch---hHHHHHHHHHcC--------CCHHHHHHHHhhCCC--CC--------hhHHHHHHHHHHhcCChHHHHHHHH
Q 009967          171 NPNVV---SYTTMICGLLKR--------ERFEDALKLFQEMPH--RN--------VVSWNAMIGGYSQTGRNEEAVNLFI  229 (521)
Q Consensus       171 ~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~~  229 (521)
                      ..+..   ....+...+...        |++++|..+|+++.+  |+        ..++..+...+...|++++|...|+
T Consensus       188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  267 (537)
T 3fp2_A          188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ  267 (537)
T ss_dssp             SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            64333   333333333322        478999999998876  32        2357777888999999999999999


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 009967          230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNI  306 (521)
Q Consensus       230 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~  306 (521)
                      ++....  |+...+..+...+...|+++.|...+..+.+..+. +..++..+..++...|++++|...|+++.+   .+.
T Consensus       268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  344 (537)
T 3fp2_A          268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV  344 (537)
T ss_dssp             HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred             HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence            999854  77788888999999999999999999999988765 678899999999999999999999998874   456


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC----ChhHHHH
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML----KPEHYAC  382 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~  382 (521)
                      ..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++....+..+    ....+..
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  423 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG  423 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence            789999999999999999999999998863 34566888889999999999999999999865433222    2223555


Q ss_pred             HHHHHHhc----------CCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          383 MVDLLSRS----------GRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       383 l~~~~~~~----------g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                      +..++.+.          |++++|...+++.. . +.+...+..+...+...|++++|.+.|+++++..|+++....
T Consensus       424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            66778888          99999999999853 2 445778999999999999999999999999999998776544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=1.5e-19  Score=172.06  Aligned_cols=303  Identities=13%  Similarity=0.082  Sum_probs=208.5

Q ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 009967          142 NVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGY  215 (521)
Q Consensus       142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~  215 (521)
                      +...+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|+..|+++.+   .+...|..+...+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            344566666677777777777777766643   2344555666666666666666666665543   2445566666666


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC---Chh-hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 009967          216 SQTGRNEEAVNLFIEMLREGLVP---NHS-TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM  291 (521)
Q Consensus       216 ~~~~~~~~a~~~~~~m~~~~~~p---~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  291 (521)
                      ...|++++|...|+++....  |   +.. .+..+...       ..                ...+..+...+...|++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred             HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence            66666666666666665532  3   111 11111000       00                01122335677888888


Q ss_pred             HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          292 EDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       292 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                      ++|...|+++.+   .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus       137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888888764   456678888888888889999998888888753 3456778888888888899999998888887


Q ss_pred             HhCCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHhhCC-CCCC-HH----HHHHHHHHHHhcCCHHHHHH
Q 009967          369 LEDPGMLKPEHYA------------CMVDLLSRSGRFKEAKEFLYDLP-FDPG-IG----FWKALLGGCQIHSNVELGEF  430 (521)
Q Consensus       369 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~----~~~~l~~~~~~~g~~~~A~~  430 (521)
                      ...+.  +...+.            .+...+.+.|++++|...+++.. ..|+ ..    .+..+...+...|++++|+.
T Consensus       216 ~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          216 KLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             HHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            55542  222222            23667889999999999998742 2333 22    34556778889999999999


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .++++++.+|+++.++..++.++...|++++|...+++..+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=5.6e-20  Score=175.11  Aligned_cols=312  Identities=10%  Similarity=-0.009  Sum_probs=238.8

Q ss_pred             ChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHH
Q 009967          107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICG  183 (521)
Q Consensus       107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~  183 (521)
                      +...+..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...|+++.+  | +...+..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            34567778888999999999999999999875 56788999999999999999999999999875  4 56788999999


Q ss_pred             HHcCCCHHHHHHHHhhCCC--C----ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 009967          184 LLKRERFEDALKLFQEMPH--R----NVVSWNAM------------IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC  245 (521)
Q Consensus       184 ~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  245 (521)
                      +...|++++|...|++..+  |    +...+..+            ...+...|++++|...++++..            
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------  148 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------------  148 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------
Confidence            9999999999999999865  3    23344444            3444555555555555555544            


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh
Q 009967          246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRG  322 (521)
Q Consensus       246 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~  322 (521)
                                             ..+. +...+..+..++...|++++|...++++.+   .+..++..+...+...|++
T Consensus       149 -----------------------~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  204 (359)
T 3ieg_A          149 -----------------------VCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH  204 (359)
T ss_dssp             -----------------------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred             -----------------------hCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence                                   3322 556667777777788888888888777654   3556777788888888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhhccHHHHHHHHHHchHhCCCCCCh--hHHHHHHHHHH
Q 009967          323 EEAIEFFERMRINGIRPNGVTLL------------GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLS  388 (521)
Q Consensus       323 ~~A~~~~~~m~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~  388 (521)
                      ++|...+++..+.. +.+...+.            .+...+...|++++|...++++....+..+..  ..+..+..++.
T Consensus       205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  283 (359)
T 3ieg_A          205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS  283 (359)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            88888888877643 22222222            23556888999999999999987655432221  23556888999


Q ss_pred             hcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          389 RSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       389 ~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      ..|++++|...+++.. . +.+...+..+...+...|++++|...|+++++.+|+++.++..+..+....
T Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            9999999999998853 2 346779999999999999999999999999999999999988888876554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.85  E-value=7.4e-18  Score=167.80  Aligned_cols=366  Identities=10%  Similarity=-0.029  Sum_probs=284.3

Q ss_pred             CCcccHHHHHHHHHh----cCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcC----CCChHHHHHHHHHHHHhCCCCc
Q 009967           71 LNVVSATTIIGRFAK----QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA----LEDLNLGKQLHAWATKVGLQSN  142 (521)
Q Consensus        71 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~  142 (521)
                      .+...+..+...|..    .+++++|+..|++..+.|   +...+..+...|..    .+++++|.+.|+...+.|   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            455666667777776    778888888888877754   45566666666665    778888888888887754   4


Q ss_pred             HHHHHHHHHHHHc----CCCHHHHHHHhhcCCC-CCchhHHHHHHHHHc----CCCHHHHHHHHhhCCC-CChhHHHHHH
Q 009967          143 VFVGSAILDLYIK----LSSIEEATRVFEDTHN-PNVVSYTTMICGLLK----RERFEDALKLFQEMPH-RNVVSWNAMI  212 (521)
Q Consensus       143 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~  212 (521)
                      ...+..+...|..    .+++++|...|++..+ .+...+..+...|..    .++.++|++.|++..+ .+..++..+.
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg  190 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG  190 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5556667777777    6788888888877655 455667777777776    7788888888887654 4677888888


Q ss_pred             HHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967          213 GGYSQ----TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN----IAALGMGKSFHACAVKFLGKLDVFVGNSLISF  284 (521)
Q Consensus       213 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  284 (521)
                      ..|..    .+++++|.++|++..+.|   +...+..+...+..    .++.+.|...++...+.+   +...+..+..+
T Consensus       191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  264 (490)
T 2xm6_A          191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred             HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            88887    788999999999888764   45566666667765    778899999999888765   55677778888


Q ss_pred             HHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 009967          285 YAK----CGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQN-----GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT  354 (521)
Q Consensus       285 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  354 (521)
                      |..    .++.++|...|++..+ .+...+..+...|...     +++++|...|++..+.|   +...+..+...+...
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~  341 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL  341 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence            887    8999999999999876 4667788888888887     89999999999998875   456677777777665


Q ss_pred             c---cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cC
Q 009967          355 G---LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HS  423 (521)
Q Consensus       355 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g  423 (521)
                      |   +.++|.++|++.. ..+   ++..+..|..+|..    .+++++|.+.+++.....+...+..|...|..    .+
T Consensus       342 g~~~~~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~  417 (490)
T 2xm6_A          342 GSEEEHKKAVEWFRKAA-AKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER  417 (490)
T ss_dssp             CCHHHHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred             CCcccHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence            5   8899999999986 433   67788889999988    89999999999986434567788888888887    89


Q ss_pred             CHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHh
Q 009967          424 NVELGEFAARRILALDPE---DVSSYVMLSNALSV  455 (521)
Q Consensus       424 ~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~  455 (521)
                      |.++|...|+++.+.+|+   ++.+...++..+..
T Consensus       418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            999999999999999854   67777777666554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.4e-18  Score=163.53  Aligned_cols=251  Identities=10%  Similarity=0.006  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967          207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFY  285 (521)
Q Consensus       207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  285 (521)
                      .+..++.++...|++++|...++++.... +.+...+..+...+...| +++.|...++.+.+..+. +...+..+..++
T Consensus        58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~  135 (330)
T 3hym_B           58 CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSF  135 (330)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence            34444445555555555555555555432 123334444445555555 555555555555544332 455666677777


Q ss_pred             HhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967          286 AKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS  362 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  362 (521)
                      ...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus       136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence            777777777777776653   334566667777777888888888888777643 3345677777777778888888888


Q ss_pred             HHHHchHhCCC-------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967          363 YFSQAKLEDPG-------MLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAAR  433 (521)
Q Consensus       363 ~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  433 (521)
                      .++++....+-       .....++..+..+|...|++++|...+++.. . +.+...+..+...+...|++++|...++
T Consensus       215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (330)
T 3hym_B          215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH  294 (330)
T ss_dssp             HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            88777643211       2334577788888888888888888887742 2 3456677888888888888888888888


Q ss_pred             HHHhcCCCCchHHHHHHHHH-HhcCChH
Q 009967          434 RILALDPEDVSSYVMLSNAL-SVAGKWD  460 (521)
Q Consensus       434 ~~~~~~p~~~~~~~~l~~~~-~~~g~~~  460 (521)
                      ++++..|+++.++..++.++ ...|+.+
T Consensus       295 ~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          295 TALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            88888888888888888887 4455543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=2.3e-18  Score=162.00  Aligned_cols=264  Identities=15%  Similarity=0.087  Sum_probs=228.8

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      .+...+..++..+...|++++|.++|+++.... +.+...+..++.++...|+++.|..+++.+.+..+. +...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence            466678888899999999999999999998864 334556677888899999999999999999997655 678888999


Q ss_pred             HHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH
Q 009967          283 SFYAKCG-SMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE  358 (521)
Q Consensus       283 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  358 (521)
                      ..+...| ++++|...|+++.+   .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            9999999 99999999999875   456789999999999999999999999998854 234567777888999999999


Q ss_pred             HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C----------CCCHHHHHHHHHHHHhcCCHHH
Q 009967          359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F----------DPGIGFWKALLGGCQIHSNVEL  427 (521)
Q Consensus       359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~~~~~~~~~l~~~~~~~g~~~~  427 (521)
                      +|...++++....+  .+...+..+...+...|++++|...+++.. .          +.....+..+...+...|++++
T Consensus       177 ~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          177 LAERFFSQALSIAP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhCC--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999974443  456789999999999999999999998742 0          3345688999999999999999


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      |+..++++++..|+++.++..++.++...|++++|...+++..+
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999998653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=5e-17  Score=161.77  Aligned_cols=363  Identities=11%  Similarity=0.011  Sum_probs=303.8

Q ss_pred             HHHHHHHHhHHCCCCCChhhHHHHHHHHcC----CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc----CCCHHHH
Q 009967           91 EAIYLFSRMLLLNIRPSEFTFGSVIPSSTA----LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK----LSSIEEA  162 (521)
Q Consensus        91 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a  162 (521)
                      .++..++...+.|   +...+..+...|..    .+++++|...|+...+.|   +...+..|...|..    .+++++|
T Consensus        25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A   98 (490)
T 2xm6_A           25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA   98 (490)
T ss_dssp             CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            3455666655543   56666666666665    899999999999999864   56677888889988    8999999


Q ss_pred             HHHhhcCCC-CCchhHHHHHHHHHc----CCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 009967          163 TRVFEDTHN-PNVVSYTTMICGLLK----RERFEDALKLFQEMPH-RNVVSWNAMIGGYSQ----TGRNEEAVNLFIEML  232 (521)
Q Consensus       163 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~  232 (521)
                      ...|++..+ .+...+..+...|..    .+++++|+..|++..+ .+..++..+...|..    .+++++|++.|++..
T Consensus        99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~  178 (490)
T 2xm6_A           99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA  178 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            999998866 466778888888888    8899999999998765 467788889999987    889999999999998


Q ss_pred             HCCCCCChhhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-
Q 009967          233 REGLVPNHSTLPCAIIAAAN----IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK----CGSMEDSLLVFDKLTE-  303 (521)
Q Consensus       233 ~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-  303 (521)
                      +.|   +...+..+...+..    .++.+.|...+....+.+   +...+..+...|..    .+++++|...|++..+ 
T Consensus       179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  252 (490)
T 2xm6_A          179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ  252 (490)
T ss_dssp             HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred             HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            864   56777778888877    899999999999999876   56778888888886    8899999999999876 


Q ss_pred             CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh-----ccHHHHHHHHHHchHhCCCC
Q 009967          304 RNIVTWNAVICGYAQ----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT-----GLVEKGYSYFSQAKLEDPGM  374 (521)
Q Consensus       304 ~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~  374 (521)
                      .+...+..+...|..    .+++++|...|++..+.|   +...+..+...+...     +++++|...|++.. ..+  
T Consensus       253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~~--  326 (490)
T 2xm6_A          253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQG--  326 (490)
T ss_dssp             TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HTT--
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hcC--
Confidence            566778888888888    899999999999998765   556777777777776     89999999999986 443  


Q ss_pred             CChhHHHHHHHHHHhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          375 LKPEHYACMVDLLSRSG---RFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                       ++..+..+..+|...|   ++++|.+.+++.....+...+..+...|..    .+++++|+..|+++.+.+  ++.++.
T Consensus       327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~  403 (490)
T 2xm6_A          327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV  403 (490)
T ss_dssp             -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence             5567888888888766   789999999886435678889999999988    899999999999999864  688999


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 009967          448 MLSNALSV----AGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       448 ~l~~~~~~----~g~~~~A~~~~~~m~~~g~  474 (521)
                      .++.+|..    .+++++|...|++..+.|.
T Consensus       404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            99999998    8999999999999998774

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.84  E-value=4.4e-19  Score=166.67  Aligned_cols=288  Identities=11%  Similarity=0.069  Sum_probs=105.6

Q ss_pred             cccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHH
Q 009967           52 GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH  131 (521)
Q Consensus        52 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  131 (521)
                      .-+.|++++|.++++++..|  .+|..++.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|+.++
T Consensus        13 l~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34678899999999999766  49999999999999999999999753      67779999999999999999999988


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHH
Q 009967          132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM  211 (521)
Q Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l  211 (521)
                      +...+.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|..++..|...|++++|...|..+     ..|..+
T Consensus        85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L  154 (449)
T 1b89_A           85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL  154 (449)
T ss_dssp             --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred             HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence            877763  45578889999999999999998888853   77779999999999999999999999987     478889


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 009967          212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM  291 (521)
Q Consensus       212 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  291 (521)
                      +.++.+.|++++|.+.++++      .++.+|..++.+|                                   ...|++
T Consensus       155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC-----------------------------------v~~~ef  193 (449)
T 1b89_A          155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC-----------------------------------VDGKEF  193 (449)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH-----------------------------------HHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH-----------------------------------HHcCcH
Confidence            99999999999998888877      2444554444444                                   445555


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hccHHHHHHHHHHchH
Q 009967          292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH--TGLVEKGYSYFSQAKL  369 (521)
Q Consensus       292 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~  369 (521)
                      +.|......+. .++.-...++..|.+.|.+++|..+++...... +-....|+.+.-++++  .++..+..+.|..   
T Consensus       194 ~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---  268 (449)
T 1b89_A          194 RLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---  268 (449)
T ss_dssp             HHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---
T ss_pred             HHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---
Confidence            55544443332 222223345566666666666666666655432 2233344444433332  3333333333321   


Q ss_pred             hCCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          370 EDPGML------KPEHYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       370 ~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      .-+++|      +...|..++..|...++++.|...+-+-
T Consensus       269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            222222      2345777777888888888777665543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=8e-19  Score=167.97  Aligned_cols=258  Identities=13%  Similarity=-0.031  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 009967          207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA  286 (521)
Q Consensus       207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  286 (521)
                      .+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..++.
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~  143 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT  143 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence            34455555555555555555555555432 123344445555555555555555555555554432 4555666666666


Q ss_pred             hcCCHHHHHHHHhhcCC--CC-hhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 009967          287 KCGSMEDSLLVFDKLTE--RN-IVTWNA---------------VICGYAQNGRGEEAIEFFERMRINGIR-PNGVTLLGL  347 (521)
Q Consensus       287 ~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l  347 (521)
                      ..|++++|.+.|+++.+  |+ ...+..               .+..+...|++++|...++++.+.... ++..++..+
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l  223 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  223 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence            66666666666665543  11 111110               133334889999999999999885311 147788899


Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCH
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNV  425 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~  425 (521)
                      ...+...|++++|...++++....+  .+..++..+..++.+.|++++|...+++.. . +.+...+..+...+...|++
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  301 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999875554  456789999999999999999999998853 2 44577899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          426 ELGEFAARRILALDPED-----------VSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       426 ~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      ++|...|+++++..|++           +.+|..++.+|...|++++|..++++
T Consensus       302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            99999999999988877           78999999999999999999998774

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=7.6e-17  Score=168.41  Aligned_cols=374  Identities=10%  Similarity=0.067  Sum_probs=292.7

Q ss_pred             hhhhcccCCChhHHHHHhccCC-CCC-----cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCC
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP-DLN-----VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL  121 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  121 (521)
                      .++.|...|.+.+|.++++++. .++     ...-+.++....+. +..+..+..++....    +   ...+...+...
T Consensus       991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A          991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISN 1062 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhC
Confidence            8889999999999999998865 222     24556677766666 556666665554321    1   33366678889


Q ss_pred             CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967          122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP  201 (521)
Q Consensus       122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  201 (521)
                      |.+++|..+|+...     ......+.++   -..|++++|.++.++..  +..+|..+..++...|++++|++.|.+. 
T Consensus      1063 glyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             CCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            99999999998852     1222223332   27789999999999774  4678899999999999999999999775 


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHH
Q 009967          202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL  281 (521)
Q Consensus       202 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  281 (521)
                       .|...|..++.++.+.|++++|.+.|....+..  +++...+.+..+|++.++++....+.+       .++...+..+
T Consensus      1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~i 1201 (1630)
T 1xi4_A         1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 1201 (1630)
T ss_pred             -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHH
Confidence             678888999999999999999999999877754  444445568899999988886554431       3456677789


Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967          282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       282 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                      ...|...|++++|..+|..+     ..|..+...+.+.|++++|.+.+++.      .+..+|..+..+|...|++..|.
T Consensus      1202 Gd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A         1202 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred             HHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999996     58999999999999999999999976      35689999999999999999998


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHh--cCCHHHHHHHHHHHHh
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQI--HSNVELGEFAARRILA  437 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~  437 (521)
                      .....+.      .++..+..++..|.+.|.+++|+.+++.. ..+|. ...|+.+...+.+  .++..++.++|..-..
T Consensus      1271 ~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A         1271 MCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred             HHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            8765432      56677889999999999999999999874 33443 3467666666655  4678888888887777


Q ss_pred             cCC-----CCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          438 LDP-----EDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       438 ~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      +.|     .+...|..+...|.+.|+++.|..++-
T Consensus      1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A         1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred             cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            666     588899999999999999999986443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=5.4e-17  Score=163.21  Aligned_cols=396  Identities=10%  Similarity=0.021  Sum_probs=248.9

Q ss_pred             ccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHH-cCCCChHHHH
Q 009967           53 SESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS-TALEDLNLGK  128 (521)
Q Consensus        53 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~  128 (521)
                      .+.|++++|+.+|+++..  | +...|...+..+.+.|++++|..+|+++.+.  .|+...|...+... ...|+.+.|.
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~  100 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK  100 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence            455666666666665432  2 3445666666666666666666666666653  24555554444322 2334544444


Q ss_pred             H----HHHHHHHh-CCCC-cHHHHHHHHHHHHc---------CCCHHHHHHHhhcCCC-CCc---hhHHHHHHHHHcCCC
Q 009967          129 Q----LHAWATKV-GLQS-NVFVGSAILDLYIK---------LSSIEEATRVFEDTHN-PNV---VSYTTMICGLLKRER  189 (521)
Q Consensus       129 ~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~~~li~~~~~~g~  189 (521)
                      +    +|+...+. |..| +...|...+.....         .|+++.|..+|++..+ |..   ..|..........|.
T Consensus       101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~  180 (530)
T 2ooe_A          101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI  180 (530)
T ss_dssp             HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence            3    55544432 3322 34455555554433         4556666666655544 221   111111110000000


Q ss_pred             HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH------HCC---CCCCh--------hhHHHHHHHHHh
Q 009967          190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML------REG---LVPNH--------STLPCAIIAAAN  252 (521)
Q Consensus       190 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~~~~~ll~~~~~  252 (521)
                                      .+...++.  .+.+++..|..+++...      +..   ++|+.        ..|...+.....
T Consensus       181 ----------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~  242 (530)
T 2ooe_A          181 ----------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS  242 (530)
T ss_dssp             ----------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence                            00000110  12345666776666532      111   23331        233333322221


Q ss_pred             h----cch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHHhhcCC---C-Ch
Q 009967          253 I----AAL----GMGKSFHACAVKFLGKLDVFVGNSLISFYAK-------CGSME-------DSLLVFDKLTE---R-NI  306 (521)
Q Consensus       253 ~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~  306 (521)
                      .    ++.    ..+..+++.++...+. +...|..++..+.+       .|+++       +|..+|++..+   | +.
T Consensus       243 ~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~  321 (530)
T 2ooe_A          243 NPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM  321 (530)
T ss_dssp             CSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred             CCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence            1    122    3667788888887544 67888888888775       78877       89999999874   3 46


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG--VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV  384 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  384 (521)
                      ..|..++..+.+.|++++|..+|+++.+.  .|+.  ..|..++..+.+.|++++|..+|+++.+..+  .+...|...+
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a  397 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAA  397 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHH
Confidence            78999999999999999999999999984  4643  4788888888899999999999999974433  2233343333


Q ss_pred             HH-HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHhcC
Q 009967          385 DL-LSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS----SYVMLSNALSVAG  457 (521)
Q Consensus       385 ~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g  457 (521)
                      .. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++++...|.++.    +|..++......|
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G  477 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  477 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence            22 34689999999999974 3334 5779999999999999999999999999998776655    8888899999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 009967          458 KWDNVSNIRREMKEKG  473 (521)
Q Consensus       458 ~~~~A~~~~~~m~~~g  473 (521)
                      +.+.+..+.+++.+.-
T Consensus       478 ~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          478 DLASILKVEKRRFTAF  493 (530)
T ss_dssp             CHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHC
Confidence            9999999999987653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.82  E-value=3.4e-17  Score=150.56  Aligned_cols=269  Identities=8%  Similarity=-0.024  Sum_probs=195.7

Q ss_pred             HHcCCCHHHHHHHhhcCCCCC--c--hhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009967          153 YIKLSSIEEATRVFEDTHNPN--V--VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF  228 (521)
Q Consensus       153 ~~~~g~~~~a~~~~~~~~~~~--~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  228 (521)
                      ....|++..|+..++.....+  .  .....+.++|...|+++.|+..++....++..++..+...+...++.++|++.+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l   88 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL   88 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            334566666666666554422  1  233445566666666666666655543345556666666666666677777777


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH
Q 009967          229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT  308 (521)
Q Consensus       229 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  308 (521)
                      +++...+..|+                                  +...+..+..++.+.|++++|.+.+++  ..+...
T Consensus        89 ~~ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~  132 (291)
T 3mkr_A           89 DREMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLEC  132 (291)
T ss_dssp             HHHHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHH
T ss_pred             HHHHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHH
Confidence            76666544454                                  556667788899999999999999998  567788


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL---LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD  385 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  385 (521)
                      +..++..+.+.|++++|.+.|+++.+..  |+....   ...+..+...|++++|..+|+++....+  .++..++.+..
T Consensus       133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~~la~  208 (291)
T 3mkr_A          133 MAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLNGQAA  208 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence            9999999999999999999999998864  654311   1223334456899999999999987655  67888999999


Q ss_pred             HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967          386 LLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVEL-GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV  462 (521)
Q Consensus       386 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  462 (521)
                      ++.+.|++++|...+++. ...| +..++..++..+...|+.++ +.++++++++.+|+++.+..    ...+.+.++++
T Consensus       209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~  284 (291)
T 3mkr_A          209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRL  284 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHH
Confidence            999999999999999984 3344 67789999999999999876 67899999999999887654    34455555555


Q ss_pred             HHH
Q 009967          463 SNI  465 (521)
Q Consensus       463 ~~~  465 (521)
                      ..-
T Consensus       285 ~~~  287 (291)
T 3mkr_A          285 VLQ  287 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=4.1e-18  Score=162.92  Aligned_cols=260  Identities=12%  Similarity=-0.032  Sum_probs=194.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967          205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF  284 (521)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  284 (521)
                      ...|..+...+.+.|++++|...|+++.... +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..+
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~  142 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS  142 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3446666666666777777777776666543 234555666666666777777777777766665433 56777788888


Q ss_pred             HHhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 009967          285 YAKCGSMEDSLLVFDKLTERN-------------IVTWNAVICGYAQNGRGEEAIEFFERMRINGIR-PNGVTLLGLLWA  350 (521)
Q Consensus       285 ~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~  350 (521)
                      |...|++++|...|+++.+.+             ...+..+...+...|++++|...++++.+.... ++..++..+...
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            888888888888888776411             223345578888999999999999999885311 157789999999


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      +...|++++|...++++....+  .+..++..+..+|...|++++|...+++.. ..| +..++..+..++...|++++|
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999986654  467789999999999999999999998843 344 577899999999999999999


Q ss_pred             HHHHHHHHhcCCC------------CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          429 EFAARRILALDPE------------DVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       429 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      ...|+++++..|+            +..+|..++.++...|+.+.+..+.++
T Consensus       301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999998776            367899999999999999999887765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=1.5e-19  Score=169.84  Aligned_cols=284  Identities=11%  Similarity=0.105  Sum_probs=124.0

Q ss_pred             cCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967          155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE  234 (521)
Q Consensus       155 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  234 (521)
                      +.|++++|.++++++..|  .+|..++.++.+.|++++|++.|.+.  +|..+|..++.++...|++++|+.+++..++.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~   90 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK   90 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            556677777777777444  37777777777777777777777653  45567777777777777788777766655553


Q ss_pred             CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 009967          235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC  314 (521)
Q Consensus       235 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~  314 (521)
                        .+++.+.+.++.+|.+.|+++.+.++++       .|+..+++.++..|...|++++|...|..+     ..|..++.
T Consensus        91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~  156 (449)
T 1b89_A           91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS  156 (449)
T ss_dssp             --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred             --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence              3456667777777777777777776664       356667888888888888888888888876     46888888


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK  394 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  394 (521)
                      ++.+.|++++|.+.+.++      .+..+|..++.+|...|+++.|......      +...+.....++..|.+.|+++
T Consensus       157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFE  224 (449)
T ss_dssp             HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHH
Confidence            888888888888888876      2667888888888888888888554433      2244445566778888888888


Q ss_pred             HHHHHHhh-CCC-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHhcCChHHHHHH
Q 009967          395 EAKEFLYD-LPF-DPGIGFWKALLGGCQIH--SNVELGEFAARRILALDP-----EDVSSYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       395 ~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      +|..+++. +.. +-....|+.|...+++-  ++..+.++.|..-+.+.|     .++..|..+...|..-++++.|..+
T Consensus       225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            88888876 333 33455777776666554  466666666665555555     5778888888888888888888775


Q ss_pred             HHH
Q 009967          466 RRE  468 (521)
Q Consensus       466 ~~~  468 (521)
                      +-+
T Consensus       305 m~~  307 (449)
T 1b89_A          305 MMN  307 (449)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.79  E-value=1.7e-17  Score=158.75  Aligned_cols=287  Identities=14%  Similarity=0.063  Sum_probs=223.0

Q ss_pred             HHhcCChHHHHH-HHHHHHHCC---CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 009967          215 YSQTGRNEEAVN-LFIEMLREG---LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS  290 (521)
Q Consensus       215 ~~~~~~~~~a~~-~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  290 (521)
                      +...|++++|.. .|++.....   ...+...+..+...+...|+++.|...++.+.+..+. +..++..+..++.+.|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence            344578888888 777655422   1113466888899999999999999999999988654 77889999999999999


Q ss_pred             HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHH
Q 009967          291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLG---------------LLWAC  351 (521)
Q Consensus       291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~---------------ll~~~  351 (521)
                      +++|...|+++.+   .+..++..+...+...|++++|...++++....  |+.. .+..               .+..+
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            9999999998864   467799999999999999999999999998854  3322 2211               23334


Q ss_pred             HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHH
Q 009967          352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      ...|++++|...++++....+..++..++..+..+|.+.|++++|...+++.. . +.+...+..+...+...|++++|+
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            48999999999999998766644467889999999999999999999998853 2 445779999999999999999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHH
Q 009967          430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL  509 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  509 (521)
                      ..|+++++..|+++.++..++.+|.+.|++++|...++++.+....  ....             ....+|....++..+
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~-------------~~~~~~~~~~~~~~l  336 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK--SRGP-------------RGEGGAMSENIWSTL  336 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT--C-------------------CCCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCc-------------cccccchhhHHHHHH
Confidence            9999999999999999999999999999999999999998764321  1100             112467778888888


Q ss_pred             HHHHHHHHhc
Q 009967          510 RSCTEQIREF  519 (521)
Q Consensus       510 ~~~~~~~~~~  519 (521)
                      +.++..+++.
T Consensus       337 ~~~~~~~g~~  346 (368)
T 1fch_A          337 RLALSMLGQS  346 (368)
T ss_dssp             HHHHHHHTCG
T ss_pred             HHHHHHhCCh
Confidence            8888777654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=2.3e-17  Score=163.55  Aligned_cols=384  Identities=12%  Similarity=-0.018  Sum_probs=188.7

Q ss_pred             cccHHHHHHHHHhcCChHHHHHHHHHhHHC-----C---CCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC------
Q 009967           73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----N---IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG------  138 (521)
Q Consensus        73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------  138 (521)
                      ...||.+...+...|++++|++.|++..+.     +   -+....+|+.+..+|...|++++|...+++..+..      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            445777777777777777777777765431     1   11224456667777777777777777777665421      


Q ss_pred             CC-CcHHHHHHHHHHHHc--CCCHHHHHHHhhcCCC--CC-chhHHHHHHH---HHcCCCHHHHHHHHhhCCC---CChh
Q 009967          139 LQ-SNVFVGSAILDLYIK--LSSIEEATRVFEDTHN--PN-VVSYTTMICG---LLKRERFEDALKLFQEMPH---RNVV  206 (521)
Q Consensus       139 ~~-~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~--~~-~~~~~~li~~---~~~~g~~~~a~~~~~~~~~---~~~~  206 (521)
                      .. ....++.....++..  .+++++|+..|++..+  |+ ...+..+..+   +...++.++|++.+++..+   .+..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~  210 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY  210 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence            01 123344444433333  3456666666666543  32 2223222222   2233444444444443322   2333


Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          207 SWNAMIGGYSQ----TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       207 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      ++..+...+..    .+++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+..+. +..++..+.
T Consensus       211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg  288 (472)
T 4g1t_A          211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIG  288 (472)
T ss_dssp             HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHH
Confidence            33333333322    234445555555544432 122333444444444555555555555544444332 333333333


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967          283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS  362 (521)
Q Consensus       283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  362 (521)
                      .+|...+....+.      ..      ..........+.++.|...+++..+.. +.+..++..+...+...|++++|..
T Consensus       289 ~~y~~~~~~~~~~------~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~  355 (472)
T 4g1t_A          289 CCYRAKVFQVMNL------RE------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY  355 (472)
T ss_dssp             HHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhhhH------HH------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence            3332111000000      00      000000011233567777777776643 2234466777788888889999998


Q ss_pred             HHHHchHhCCCCCChh----HHHHHHH-HHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967          363 YFSQAKLEDPGMLKPE----HYACMVD-LLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRIL  436 (521)
Q Consensus       363 ~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  436 (521)
                      .|+++....   |+..    .+..+.. .+...|++++|+..+++. ...|+......         ....+..++++.+
T Consensus       356 ~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l  423 (472)
T 4g1t_A          356 YFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRL  423 (472)
T ss_dssp             HHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHH
Confidence            888876333   2222    2233332 234678888898888763 34555433222         2345567788888


Q ss_pred             hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEE
Q 009967          437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI  483 (521)
Q Consensus       437 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  483 (521)
                      ..+|+++.+|..++.+|...|++++|++.|++..+.|...+...+|+
T Consensus       424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            89999999999999999999999999999999998876665555554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=1.7e-16  Score=159.58  Aligned_cols=370  Identities=10%  Similarity=-0.011  Sum_probs=239.3

Q ss_pred             CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 009967           72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD  151 (521)
Q Consensus        72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  151 (521)
                      +...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|+++.|..+|+.+++.  .|+...|...+.
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~   87 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS   87 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence            5567777777 467788888888888887642 445666777777777778888888888887764  356666666664


Q ss_pred             HH-HcCCCHHHHHH----HhhcCCC------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 009967          152 LY-IKLSSIEEATR----VFEDTHN------PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR  220 (521)
Q Consensus       152 ~~-~~~g~~~~a~~----~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~  220 (521)
                      .. ...|+.+.|.+    +|+....      ++...|...+....+....             +         .+...|+
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~-------------~---------~~~~~~~  145 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV-------------G---------SYAENQR  145 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC-------------S---------STTHHHH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc-------------c---------cHHHHhH
Confidence            32 34566665554    4443321      2233444444433320000             0         0001344


Q ss_pred             hHHHHHHHHHHHHCCCCCCh---hhHHHHHHHH-------------HhhcchHHHHHHHHHHH------HcC---CCCC-
Q 009967          221 NEEAVNLFIEMLREGLVPNH---STLPCAIIAA-------------ANIAALGMGKSFHACAV------KFL---GKLD-  274 (521)
Q Consensus       221 ~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~-  274 (521)
                      ++.|..+|++....   |..   ..|.......             ...+++..|..++....      +..   ++|+ 
T Consensus       146 ~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~  222 (530)
T 2ooe_A          146 ITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN  222 (530)
T ss_dssp             HHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred             HHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence            44555555444441   211   1111111100             12345666666665532      111   2333 


Q ss_pred             -------hhHHHHHHHHHHhc----CCH----HHHHHHHhhcCC---CChhHHHHHHHHHHH-------cCChH------
Q 009967          275 -------VFVGNSLISFYAKC----GSM----EDSLLVFDKLTE---RNIVTWNAVICGYAQ-------NGRGE------  323 (521)
Q Consensus       275 -------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~------  323 (521)
                             ...|...+......    ++.    +.+..+|+++..   .++..|..++..+.+       .|+++      
T Consensus       223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~  302 (530)
T 2ooe_A          223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS  302 (530)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence                   23455554433322    232    467778888775   456788888888776       79987      


Q ss_pred             -HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC-h-hHHHHHHHHHHhcCCHHHHHHHH
Q 009967          324 -EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-P-EHYACMVDLLSRSGRFKEAKEFL  400 (521)
Q Consensus       324 -~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~  400 (521)
                       +|..++++..+.-.+-+...+..++..+...|++++|..+|+++....   |+ + ..|..++..+.+.|++++|.++|
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~~  379 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIF  379 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---ccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence             899999998863223356788888889999999999999999998433   43 2 47899999999999999999999


Q ss_pred             hhCC-CCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          401 YDLP-FDPG-IGFWKALLGG-CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       401 ~~~~-~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ++.. ..|. ...+...+.. +...|+.++|..+|+++++..|+++.+|..++..+.+.|+.++|+.+|++....+
T Consensus       380 ~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          380 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            9843 2332 3333333322 3468999999999999999999999999999999999999999999999998864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.78  E-value=1.6e-15  Score=158.72  Aligned_cols=349  Identities=14%  Similarity=0.067  Sum_probs=274.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHHCCC--CCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 009967           77 TTIIGRFAKQHHYEEAIYLFSRMLLLNI--RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI  154 (521)
Q Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  154 (521)
                      ...+.+|+..|.+.+|++++++....+-  .-+...-+.++....+. +..+..++.+.....    +   ...+...+.
T Consensus       989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A          989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence            4566788889999999999999884321  12234444556555554 556666666554421    1   334677888


Q ss_pred             cCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967          155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE  234 (521)
Q Consensus       155 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  234 (521)
                      ..|.+++|..+|++.... ....+.+   +-..|++++|.++.++..  +..+|..+..++...|++++|+..|.+.   
T Consensus      1061 ~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1061 SNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             hCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            999999999999998521 1112222   227789999999999884  5788999999999999999999999664   


Q ss_pred             CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 009967          235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC  314 (521)
Q Consensus       235 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~  314 (521)
                         -|...|..++.+|.+.|+++.+.+++....+....  +.+.+.++.+|++.+++++...+.   ..++...|..+..
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e--~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc--ccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence               56778889999999999999999999998887633  333446999999999998655443   4567778888999


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK  394 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  394 (521)
                      .|...|++++|..+|...         ..|..+..++.+.|+++.|.+.+++.       .++.+|..+..++...|++.
T Consensus      1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHH
Confidence            999999999999999984         48899999999999999999999877       36688999999999999999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc--CChHHHHHHHHH
Q 009967          395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA--GKWDNVSNIRRE  468 (521)
Q Consensus       395 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~  468 (521)
                      .|......+  ..+...+..++..|...|.+++|+.+++.++.++|.+...|..++.+|.+-  ++..++.++|..
T Consensus      1268 LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A         1268 LAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred             HHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999988764  345556678999999999999999999999999999999998888887764  566666666654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=3.7e-17  Score=153.43  Aligned_cols=257  Identities=11%  Similarity=-0.053  Sum_probs=183.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK  287 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  287 (521)
                      +..+...+...|++++|..+|+++.... +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..++..
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~  101 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence            4444455555555555555555554432 123344444555555555555555555555554332 45556666666667


Q ss_pred             cCCHHHHHHHHhhcCC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009967          288 CGSMEDSLLVFDKLTE--R-NIVTWNAV--------------IC-GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW  349 (521)
Q Consensus       288 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  349 (521)
                      .|++++|.+.|+++.+  | +...+..+              .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  180 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV  180 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            7777777776666543  1 12222222              22 3667788999999999988754 346778888999


Q ss_pred             HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHH
Q 009967          350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVEL  427 (521)
Q Consensus       350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~  427 (521)
                      .+...|++++|...++++....+  .+...+..+..++...|++++|...+++.. . +.+...+..+...+...|++++
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999875554  456789999999999999999999998842 2 4457789999999999999999


Q ss_pred             HHHHHHHHHhcCCC------------CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          428 GEFAARRILALDPE------------DVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       428 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      |...++++++..|+            ++.++..++.++.+.|++++|..++++.
T Consensus       259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999998            6889999999999999999999998754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.77  E-value=6e-17  Score=148.93  Aligned_cols=243  Identities=8%  Similarity=0.031  Sum_probs=186.4

Q ss_pred             HHHcCCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHH
Q 009967          183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM  258 (521)
Q Consensus       183 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  258 (521)
                      -....|+++.|+..++.....++    .....+.++|...|+++.|+..++.                            
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------------------------   59 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------------------------   59 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------------------------
Confidence            34455666666666665544322    2334455666666666666554322                            


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009967          259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT----ER-NIVTWNAVICGYAQNGRGEEAIEFFERMR  333 (521)
Q Consensus       259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~  333 (521)
                                 ..+|+..++..+...+...++.++|.+.++++.    .| +...+..+...+...|++++|++.+++  
T Consensus        60 -----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--  126 (291)
T 3mkr_A           60 -----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--  126 (291)
T ss_dssp             -----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred             -----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence                       112356677788889999999999999999864    24 456777788999999999999999987  


Q ss_pred             HCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCC
Q 009967          334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE---HYACMVDLLSRSGRFKEAKEFLYDLP--FDPG  408 (521)
Q Consensus       334 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~  408 (521)
                          +.+...+..++..+...|++++|...++++....   |+..   ....++..+...|++++|..+|+++.  .+.+
T Consensus       127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~  199 (291)
T 3mkr_A          127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT  199 (291)
T ss_dssp             ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred             ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence                4677788899999999999999999999998554   4432   12234455556699999999999863  3567


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 009967          409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN-VSNIRREMKEKG  473 (521)
Q Consensus       409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g  473 (521)
                      ...++.+..++...|++++|+..|+++++.+|+++.++..++.++...|+.++ +.++++++.+..
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            88999999999999999999999999999999999999999999999999976 578999887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=8.6e-17  Score=153.68  Aligned_cols=232  Identities=14%  Similarity=0.073  Sum_probs=197.9

Q ss_pred             ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 009967          239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICG  315 (521)
Q Consensus       239 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~  315 (521)
                      +...+......+...|+++.|..+++.+.+..+. +..++..+..+|.+.|++++|...|+++.+   .+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            4456888899999999999999999999998765 788999999999999999999999999874   457799999999


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRPNGV-----------TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV  384 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  384 (521)
                      |...|++++|...++++.+..  |+..           .+..+...+...|++++|..+++++....+..+++.++..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            999999999999999998742  4322           233457788999999999999999987766444788999999


Q ss_pred             HHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967          385 DLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV  462 (521)
Q Consensus       385 ~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  462 (521)
                      .+|.+.|++++|.+.+++.. . +.+..+|..+..++...|++++|+..|+++++..|+++.++..++.+|.+.|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999853 2 456779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 009967          463 SNIRREMKEKG  473 (521)
Q Consensus       463 ~~~~~~m~~~g  473 (521)
                      ...++++.+..
T Consensus       301 ~~~~~~al~~~  311 (365)
T 4eqf_A          301 VSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999987643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=7.2e-16  Score=152.73  Aligned_cols=372  Identities=11%  Similarity=-0.036  Sum_probs=226.2

Q ss_pred             hhhhcccCCChhHHHHHhccCC-----------CC-CcccHHHHHHHHHhcCChHHHHHHHHHhHHC-----C-CCC-Ch
Q 009967           48 SVSCGSESDKFSSVHQVFDEVP-----------DL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----N-IRP-SE  108 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~  108 (521)
                      |...+...|++++|++.|++..           .| ...+|+.+...|...|++++|...+++..+.     + ..+ ..
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            6778889999999999997531           12 3467999999999999999999999987642     1 111 23


Q ss_pred             hhHHHHHHHHc--CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH---HHcCCCHHHHHHHhhcCCC--C-CchhHHHH
Q 009967          109 FTFGSVIPSST--ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL---YIKLSSIEEATRVFEDTHN--P-NVVSYTTM  180 (521)
Q Consensus       109 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l  180 (521)
                      .++.....++.  ..+++++|+..|+...+.. +-+...+..+..+   +...++.++|++.+++..+  | +...+..+
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l  215 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL  215 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence            45555544443  4568999999999999865 3445555555544   4456788888888887654  3 44556666


Q ss_pred             HHHHHc----CCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh
Q 009967          181 ICGLLK----RERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-STLPCAIIAAAN  252 (521)
Q Consensus       181 i~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~  252 (521)
                      ...+..    .|++++|.+.+++...   .+..++..+...|...|++++|...+++..+..  |+. .++..+..++..
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHH
Confidence            555544    4678899999987653   467889999999999999999999999998853  554 344444444432


Q ss_pred             hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967          253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFF  329 (521)
Q Consensus       253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~  329 (521)
                      .+.......                ...........+..+.|...|++..+   .+..++..+...|...|++++|...|
T Consensus       294 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~  357 (472)
T 4g1t_A          294 KVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF  357 (472)
T ss_dssp             HHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence            221111100                00011111122345677777777653   45568888999999999999999999


Q ss_pred             HHHHHCCCCCCHH--HHHHHHH-HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 009967          330 ERMRINGIRPNGV--TLLGLLW-ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF  405 (521)
Q Consensus       330 ~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  405 (521)
                      ++..+....|...  .+..+.. .....|+.++|...|++.....   |+.......         ...+.++++.. ..
T Consensus       358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~~~---------~~~l~~~~~~~l~~  425 (472)
T 4g1t_A          358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKEKM---------KDKLQKIAKMRLSK  425 (472)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHH---------HHHHHHHHHHHHHh
Confidence            9988864333221  2223322 2356789999999999887433   343222211         22233333321 11


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          406 -DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       406 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                       +.+..+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus       426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence             445668999999999999999999999999999998887766554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.72  E-value=5.3e-16  Score=145.50  Aligned_cols=261  Identities=10%  Similarity=-0.006  Sum_probs=135.2

Q ss_pred             hhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCC
Q 009967          109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE  188 (521)
Q Consensus       109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  188 (521)
                      ..+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+.                
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------   84 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML----------------   84 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------
Confidence            334445555556666666666666665543 334455555555555555555555555544320                


Q ss_pred             CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHH--------------HH-HHHh
Q 009967          189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-LPCA--------------II-AAAN  252 (521)
Q Consensus       189 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l--------------l~-~~~~  252 (521)
                                  ...+..++..+...+...|++++|.+.++++....  |+... +..+              .. .+..
T Consensus        85 ------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (327)
T 3cv0_A           85 ------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAA  150 (327)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTS
T ss_pred             ------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence                        11245566667777777777777777777776643  32221 1111              11 2445


Q ss_pred             hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967          253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFF  329 (521)
Q Consensus       253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~  329 (521)
                      .|+++.|...++.+.+..+. +..++..+..++...|++++|.+.++++.+   .+..+|..+...+...|++++|...+
T Consensus       151 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55566666666665555433 445555555555566666666655555442   23345555555555555555555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC----------ChhHHHHHHHHHHhcCCHHHHHHH
Q 009967          330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML----------KPEHYACMVDLLSRSGRFKEAKEF  399 (521)
Q Consensus       330 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~  399 (521)
                      +++.+.. +.+..++..+..++...|++++|...++++....+...          +...+..+..++.+.|++++|..+
T Consensus       230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            5555432 22344555555555555555555555555543222100          233444455555555555555555


Q ss_pred             Hhh
Q 009967          400 LYD  402 (521)
Q Consensus       400 ~~~  402 (521)
                      +++
T Consensus       309 ~~~  311 (327)
T 3cv0_A          309 YAQ  311 (327)
T ss_dssp             TTC
T ss_pred             HHH
Confidence            443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=1.6e-15  Score=133.10  Aligned_cols=195  Identities=14%  Similarity=0.014  Sum_probs=156.4

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967          272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL  348 (521)
Q Consensus       272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  348 (521)
                      +++...+..+...+.+.|++++|...|++..+   .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34677788888899999999999999998865   356788889999999999999999999988853 23556888888


Q ss_pred             HHHHhh-----------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 009967          349 WACNHT-----------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALL  416 (521)
Q Consensus       349 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~  416 (521)
                      .++...           |++++|...++++....+  .+...+..+..+|...|++++|+..+++.. ...+...+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la  158 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence            888888           999999999999986664  456788999999999999999999998842 226788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      .++...|++++|+..|+++++.+|+++.++..++.++.+.|++++|+..+++.
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999874

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=4.9e-15  Score=133.73  Aligned_cols=219  Identities=11%  Similarity=0.074  Sum_probs=164.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY  285 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  285 (521)
                      ..|..+...+...|++++|...|++..+..  .                                   +...+..+..++
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~   48 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE   48 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence            455566666666666666666666665543  3                                   445555566666


Q ss_pred             HhcCCHHHHHHHHhhcCC--C----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967          286 AKCGSMEDSLLVFDKLTE--R----N----IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG  355 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  355 (521)
                      ...|++++|...|+++.+  |    +    ..+|..+...+...|++++|...|+++...  .|+.       ..+...|
T Consensus        49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~  119 (258)
T 3uq3_A           49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLR  119 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHh
Confidence            666666666666665543  1    1    456777888888888888888888888774  3553       3456678


Q ss_pred             cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967          356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAAR  433 (521)
Q Consensus       356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  433 (521)
                      ++++|...++++....+  .+...+..+...+...|++++|...+++..  .+.+...+..+...+...|++++|+..++
T Consensus       120 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVNP--EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            88899999988864332  345578888889999999999999988753  24457788889999999999999999999


Q ss_pred             HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       434 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ++++..|+++.++..++.++...|++++|...+++..+.
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.3e-15  Score=135.94  Aligned_cols=238  Identities=10%  Similarity=-0.004  Sum_probs=178.4

Q ss_pred             chhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHH
Q 009967          174 VVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHSTLPCAIIA  249 (521)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~  249 (521)
                      ...|..+...+...|++++|+..|++..+  .+..+|..+..++...|++++|...+++.....  ..|+...       
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------   77 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV-------   77 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence            35678889999999999999999987643  678899999999999999999999999987742  1111100       


Q ss_pred             HHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHH
Q 009967          250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIE  327 (521)
Q Consensus       250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~  327 (521)
                                              ...++..+..++...|++++|...|+++.+  |+       ...+...|++++|..
T Consensus        78 ------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~  126 (258)
T 3uq3_A           78 ------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELK  126 (258)
T ss_dssp             ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred             ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHH
Confidence                                    134455566666666777777666666654  33       234556677888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-
Q 009967          328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-  405 (521)
Q Consensus       328 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-  405 (521)
                      .++++.... +.+...+..+...+...|++++|...++++....+  .++.++..+..+|.+.|++++|...+++.. . 
T Consensus       127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            888877742 22344677777788888888888888888875554  456778888888999999999998888742 2 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHH
Q 009967          406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALD------PEDVSSYVMLSNA  452 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~  452 (521)
                      +.+...|..+...+...|++++|...++++++..      |++..++..+..+
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            3457788888899999999999999999999988      8777777666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.66  E-value=8.6e-15  Score=143.48  Aligned_cols=377  Identities=9%  Similarity=-0.035  Sum_probs=218.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967           79 IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL---NLGKQLHAWATKVGLQSNVFVGSAILDLYIK  155 (521)
Q Consensus        79 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  155 (521)
                      +...+.+.|++++|++.|++..+.|   +...+..+...+...|+.   ++|..+|+...+.    +...+..+...+..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            3444555566666666666655544   122222233333444444   5566666555532    33334444443333


Q ss_pred             CC-----CHHHHHHHhhcCCC-CCchhHHHHHHHHHcCCCHHHH---HHHHhhCCC-CChhHHHHHHHHHHhcCChHHHH
Q 009967          156 LS-----SIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDA---LKLFQEMPH-RNVVSWNAMIGGYSQTGRNEEAV  225 (521)
Q Consensus       156 ~g-----~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a---~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~  225 (521)
                      .|     ++++|...|++..+ .+...+..|...|...+..+++   .+.+..... .+...+..+...|...+.++++.
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence            33     45566666655544 2333555555555554433322   222222221 34556666777777766554444


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhhc---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHH
Q 009967          226 NLFIEMLREGLVPNHSTLPCAIIAAANIA---ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC----GSMEDSLLVF  298 (521)
Q Consensus       226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~  298 (521)
                      .....+.+.-...++..+..+...+...|   +.++|...+....+.|.. +...+..+..+|...    +++++|.+.|
T Consensus       162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~  240 (452)
T 3e4b_A          162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALL  240 (452)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            43333322212223336666666676677   777777777777777644 444446677777554    7899999999


Q ss_pred             hhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-----cHHHHHHHHHHchHh
Q 009967          299 DKLTERNIVTWNAVICG-Y--AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG-----LVEKGYSYFSQAKLE  370 (521)
Q Consensus       299 ~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~  370 (521)
                      ++....++..+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|..+|++..  
T Consensus       241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--  314 (452)
T 3e4b_A          241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--  314 (452)
T ss_dssp             HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence            98884455677777776 4  45789999999999998876   6667777777776 55     8999999999874  


Q ss_pred             CCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 009967          371 DPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPED  442 (521)
Q Consensus       371 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~  442 (521)
                         .-++..+..|..+|..    ..++++|...|++.....+......|...|..    ..|.++|...|+++.+.++.+
T Consensus       315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~  391 (452)
T 3e4b_A          315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE  391 (452)
T ss_dssp             ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred             ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence               2466778888888876    34899999999885434455566667766654    469999999999999987644


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .......+......++..+|..+.++..+.
T Consensus       392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          392 ANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            443333333334445677888888776543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.65  E-value=1.8e-14  Score=131.49  Aligned_cols=240  Identities=11%  Similarity=-0.046  Sum_probs=177.1

Q ss_pred             cCChHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 009967          218 TGRNEEAVNLFIEMLREGLV---PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS  294 (521)
Q Consensus       218 ~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  294 (521)
                      .|++++|+..|+++.+....   .+..++..+..++...|+++.|...++.+.+..+. +..++..+..+|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence            45566666666666654211   12344556666666667777777777666666543 677888888899999999999


Q ss_pred             HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhC
Q 009967          295 LLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED  371 (521)
Q Consensus       295 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  371 (521)
                      ...|+++.+   .+..++..+...+...|++++|...++++.+.  .|+.......+..+...|++++|...+++.....
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            999988874   45678899999999999999999999999874  3555555555556677899999999998876555


Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967          372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS  445 (521)
Q Consensus       372 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  445 (521)
                      +  ++...+ .++..+...++.++|...+++.. ..|+     ...+..+...+...|++++|...|+++++.+|++...
T Consensus       175 ~--~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          175 D--KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             C--CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             C--cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence            4  333344 46777788888999999998753 2232     4678888999999999999999999999999977554


Q ss_pred             HHHHHHHHHhcCChHHHHHHH
Q 009967          446 YVMLSNALSVAGKWDNVSNIR  466 (521)
Q Consensus       446 ~~~l~~~~~~~g~~~~A~~~~  466 (521)
                      +   +.++...|++++|++.+
T Consensus       252 ~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 H---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             H---HHHHHHHHHHHHC----
T ss_pred             H---HHHHHHHHHHHhhHHHH
Confidence            4   66788889999998876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.65  E-value=2.6e-14  Score=130.19  Aligned_cols=246  Identities=13%  Similarity=-0.003  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFY  285 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~  285 (521)
                      +......+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...++.+.+....++  ...+..+..++
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3444555566666666666666665532 11223555555566666666666666666655321111  22356666777


Q ss_pred             HhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967          286 AKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS  362 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  362 (521)
                      ...|++++|...|++..+   .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|..
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777776653   344567777777777777777777777766542 2234455555523334457777777


Q ss_pred             HHHHchHhCCCCCChhHHHHHHHHHHhcCC---HHHHHHHHhhCC----CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 009967          363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGR---FKEAKEFLYDLP----FDPG------IGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      .|+++.+..+  .+...+..+..++...|+   +++|...+++..    ..|+      ..+|..+...+...|++++|.
T Consensus       164 ~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          164 SFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7777765443  335566666777776666   555666555431    1232      246777888888999999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967          430 FAARRILALDPEDVSSYVMLSNALSVAG  457 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g  457 (521)
                      +.++++++.+|+++.++..+.......+
T Consensus       242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            9999999999999988887776655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.63  E-value=3.4e-14  Score=139.24  Aligned_cols=344  Identities=10%  Similarity=-0.009  Sum_probs=238.7

Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH---HHHHHHhhcCCCCCchhHHHHHHHHHcCC--
Q 009967          114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI---EEATRVFEDTHNPNVVSYTTMICGLLKRE--  188 (521)
Q Consensus       114 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g--  188 (521)
                      +...+.+.|++++|.++|+...+.|.   ...+..+...|...|+.   ++|...|++..+.+...+..+...+...+  
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            44556677999999999999998772   33445566677778888   99999999988777778888888666665  


Q ss_pred             ---CHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHH
Q 009967          189 ---RFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNE---EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS  261 (521)
Q Consensus       189 ---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  261 (521)
                         +.++|+..|++..++ +...+..|...|...+..+   ++.+.+......|   +......+...+...+.++.+..
T Consensus        86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence               788999999987653 4567888888888776544   3555555555544   34456667777777775555544


Q ss_pred             HHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc----CChHHHHHHHHH
Q 009967          262 FHACAVKFLGKLDVFVGNSLISFYAKCG---SMEDSLLVFDKLTE---RNIVTWNAVICGYAQN----GRGEEAIEFFER  331 (521)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~A~~~~~~  331 (521)
                      ......+.-...++..+..|..+|.+.|   +.++|.+.|++..+   ++...+..+...|...    +++++|...|++
T Consensus       163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            4333333333335558888999999999   99999999998865   3344446777777654    799999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHH-H--HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhC
Q 009967          332 MRINGIRPNGVTLLGLLWA-C--NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG-----RFKEAKEFLYDL  403 (521)
Q Consensus       332 m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~  403 (521)
                      .. .|   +...+..+... +  ...+++++|...|++.. ..+   ++..+..|..+|. .|     ++++|.+.|++.
T Consensus       243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            87 43   45566666665 4  56899999999999986 554   6777888888887 56     999999999998


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 009967          404 PFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~  475 (521)
                      . ..+...+..|...|..    ..|+++|...|+++.+.  .++.....++.+|..    ..+.++|...++...+.|..
T Consensus       314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            8 7778888888877766    34999999999999875  467788999999885    46899999999999888753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=2.8e-13  Score=123.53  Aligned_cols=223  Identities=9%  Similarity=-0.049  Sum_probs=125.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      +..++..+...+...|++++|+..|++..+.+   +...+                                   ..+..
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~-----------------------------------~~lg~   46 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC-----------------------------------FNLGV   46 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH-----------------------------------HHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHH-----------------------------------HHHHH
Confidence            45566677777777777777777777776622   22333                                   33444


Q ss_pred             HHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 009967          284 FYAK----CGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQ----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH-  353 (521)
Q Consensus       284 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-  353 (521)
                      .|..    .+++++|...|++..+ .+...+..+...|..    .+++++|...|++..+.+   +...+..+...|.. 
T Consensus        47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~  123 (273)
T 1ouv_A           47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG  123 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred             HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence            4444    4455555554444432 233444555555555    555555555555555543   44455555555555 


Q ss_pred             ---hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 009967          354 ---TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----H  422 (521)
Q Consensus       354 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~  422 (521)
                         .+++++|...|++.. ..+   +...+..+..+|..    .+++++|...+++.....+...+..+...+..    .
T Consensus       124 ~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~  199 (273)
T 1ouv_A          124 KVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT  199 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             CCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence               556666666665554 222   34445555555555    55666666665553222344555555556666    6


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g  473 (521)
                      +++++|+..|+++.+.+|  +..+..++.+|..    .+++++|...+++..+.|
T Consensus       200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            666666666666666544  5566666666666    666666666666665554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.62  E-value=5e-16  Score=157.59  Aligned_cols=116  Identities=12%  Similarity=0.066  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLT-------ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL  347 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  347 (521)
                      ..+|++++++|++.|++++|.++|.+|.       .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            3467777777777777777777775543       367777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhcc-HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967          348 LWACNHTGL-VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG  391 (521)
Q Consensus       348 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  391 (521)
                      |.++++.|+ .+.|.++|++|. ..|+.||..+|+.++....+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~  250 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRAT  250 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHH
Confidence            777777766 456777777774 6677777777776666555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=7.1e-14  Score=132.83  Aligned_cols=246  Identities=9%  Similarity=0.065  Sum_probs=184.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcc-hHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAA-LGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      ..+|..+..++.+.|++++|+..|++.+...  |+ ...|..+..++...|+ ++.|...++.+++..+. +..+|..+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence            4566777777777777777777777777643  43 4455666666677775 77777777777776655 777888888


Q ss_pred             HHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hccHH
Q 009967          283 SFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH-TGLVE  358 (521)
Q Consensus       283 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~  358 (521)
                      .++.+.|++++|+..|+++.+   .+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.. .|..+
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            888888899999888888874   466788888888889999999999999988854 2356688888888877 55546


Q ss_pred             HH-----HHHHHHchHhCCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC-------
Q 009967          359 KG-----YSYFSQAKLEDPGMLKPEHYACMVDLLSRSG--RFKEAKEFLYDLPFDP-GIGFWKALLGGCQIHS-------  423 (521)
Q Consensus       359 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g-------  423 (521)
                      +|     ...++++....+  -+...|..+..++...|  ++++|.+.+.++...| +...+..++..+...|       
T Consensus       253 eA~~~~el~~~~~Al~l~P--~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            66     477888775554  35667888888888887  6888888888774444 4557778888877763       


Q ss_pred             -C-HHHHHHHHHHH-HhcCCCCchHHHHHHHHHHhc
Q 009967          424 -N-VELGEFAARRI-LALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       424 -~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~  456 (521)
                       + .++|+++|+++ .+.+|.....|..++..+...
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence             2 58899999999 899998888888888776543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.60  E-value=4.7e-16  Score=157.78  Aligned_cols=149  Identities=10%  Similarity=0.016  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLR---EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI  282 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  282 (521)
                      .+||++|++|++.|+.++|.++|++|.+   .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.|         
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P---------  198 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP---------  198 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------
Confidence            5677777777777777777777766653   3566666665555555555555555555555555555554         


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967          283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG-EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                                            |+.|||++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+    ++
T Consensus       199 ----------------------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL  252 (1134)
T 3spa_A          199 ----------------------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VL  252 (1134)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HH
T ss_pred             ----------------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HH
Confidence                                  555566666666777764 788899999999999999999999887665543    44


Q ss_pred             HHHHHchHhCCCCCC------hhHHHHHHHHHHhcC
Q 009967          362 SYFSQAKLEDPGMLK------PEHYACMVDLLSRSG  391 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g  391 (521)
                      +..+++  ..++.|+      ..+-..|.+.|.+.+
T Consensus       253 ~~Vrkv--~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          253 KAVHKV--KPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHGGG--CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHh--CcccCCCCCCcccccchHHHHHHHccCC
Confidence            444444  2223332      233445666666554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.59  E-value=4.7e-14  Score=126.06  Aligned_cols=196  Identities=9%  Similarity=0.051  Sum_probs=137.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      ....+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            455666677777888888888888887754   345677778888888888888888888877653 3356677777788


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      +...|++++|...++++....+  .+...+..+..++.+.|++++|...+++.. . +.+...+..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            8888888888888888765544  456677788888888888888888887742 2 34566778888888888888888


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +..++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            88888888888888888888888888888888888888887654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=4.5e-13  Score=120.42  Aligned_cols=167  Identities=13%  Similarity=0.044  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACN  352 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~  352 (521)
                      .+..+..++...|++++|.+.|+++.+   .+...+..+...+...|++++|..+++++...+..|+ ...+..+...+.
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~  152 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL  152 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence            344444444444444444444444332   2333444455555555555555555555544222232 234444445555


Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEF  430 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~  430 (521)
                      ..|++++|...++++....+  .+...+..+..+|...|++++|...+++.. . +.+...+..+...+...|++++|.+
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  230 (252)
T 2ho1_A          153 QMKKPAQAKEYFEKSLRLNR--NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS  230 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence            55555555555555543332  233444455555555555555555554421 1 2233344444445555555555555


Q ss_pred             HHHHHHhcCCCCchH
Q 009967          431 AARRILALDPEDVSS  445 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~  445 (521)
                      .++++.+..|+++..
T Consensus       231 ~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          231 YGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHCCCCHHH
Confidence            555555555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=1.6e-13  Score=123.39  Aligned_cols=197  Identities=11%  Similarity=-0.036  Sum_probs=171.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC  351 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  351 (521)
                      ...+..+...+...|++++|.+.|+++.+   .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            55677788889999999999999998764   466789999999999999999999999998854 34677888899999


Q ss_pred             HhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 009967          352 NHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       352 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      ...|++++|..+++++.. .+..| +...+..+..+|...|++++|.+.+++.. . +.+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999874 33334 45678889999999999999999998843 2 34577899999999999999999


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      ...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=1.6e-13  Score=120.24  Aligned_cols=191  Identities=15%  Similarity=0.031  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      ...+..+...+...|++++|...|++..+..  |+ ...+..+..++...|+++.|...++.+.+..+. +...+..+..
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~   81 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE   81 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence            3444455555555555555555555554432  22 222333333333333333333333333333322 3344444444


Q ss_pred             HHHhc-----------CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009967          284 FYAKC-----------GSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW  349 (521)
Q Consensus       284 ~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  349 (521)
                      ++.+.           |++++|...|++..+  | +...|..+..++...|++++|+..|++..+..  .+...+..+..
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~  159 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence            44444           445555544444432  2 23344444445555555555555555544433  34444444555


Q ss_pred             HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967          350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD  402 (521)
Q Consensus       350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  402 (521)
                      ++...|++++|...|+++....+  .++..+..+..++.+.|++++|...+++
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTC-------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            55555555555555555443332  2333444444555555555555444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=5.9e-14  Score=125.37  Aligned_cols=213  Identities=15%  Similarity=0.091  Sum_probs=147.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      ....|..+...+...|++++|...|+++....  |+                                  +...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~----------------------------------~~~~~~~la~   65 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE----------------------------------DAIPYINFAN   65 (243)
T ss_dssp             --------------------CCTTHHHHHTTC--TT----------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHH
Confidence            34456666666666677777777776666532  32                                  4555666677


Q ss_pred             HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 009967          284 FYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG  360 (521)
Q Consensus       284 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  360 (521)
                      ++...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus        66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            77777777777777776653   355677778888888888888888888887753 34566778888888899999999


Q ss_pred             HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      ...++++....+  .+...+..+..++.+.|++++|...+++.. . +.+...+..+...+...|++++|...++++++.
T Consensus       145 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          145 LPYLQRAVELNE--NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            999998875554  456778888999999999999999988742 2 445778889999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHh
Q 009967          439 DPEDVSSYVMLSNALSV  455 (521)
Q Consensus       439 ~p~~~~~~~~l~~~~~~  455 (521)
                      .|+++.++..+......
T Consensus       223 ~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          223 QPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             CTTCHHHHHHHTC----
T ss_pred             CcchHHHHHHHHHHHhh
Confidence            99998888777655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=3.1e-13  Score=119.02  Aligned_cols=197  Identities=11%  Similarity=0.046  Sum_probs=147.7

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      +...+..+...+...|++++|.+.|+++.+   .+...+..+...+...|++++|...++++.... +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            445566677777777888888877777653   345677777788888888888888888877643 3356677777778


Q ss_pred             HHhh-ccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 009967          351 CNHT-GLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE  426 (521)
Q Consensus       351 ~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~  426 (521)
                      +... |++++|...++++.. .+..|+ ...+..+..++...|++++|...+++.. . +.+...+..+...+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            8888 888888888888764 332233 4567778888888888888888887642 2 334667788888888888888


Q ss_pred             HHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          427 LGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       427 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            88888888888888 78888888888888888888888888887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.58  E-value=3.2e-13  Score=122.95  Aligned_cols=228  Identities=5%  Similarity=-0.081  Sum_probs=186.8

Q ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh----HHHHHHH
Q 009967          241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV----TWNAVIC  314 (521)
Q Consensus       241 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~  314 (521)
                      ..+......+...|+++.|...++.+.+..+. +...+..+..+|...|++++|...|+++.+  ++..    .|..+..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            34556678889999999999999999988655 566888899999999999999999998875  3332    4889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK  394 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  394 (521)
                      .+...|++++|...+++..+.. +.+..++..+...+...|++++|...++++....+  .+...+..+...+...++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC--CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998853 33557889999999999999999999999874432  45667777883444556999


Q ss_pred             HHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chHHHHHHHHHHhcCChHH
Q 009967          395 EAKEFLYDLP-FDP-GIGFWKALLGGCQIHSN---VELGEFAARRILALD---PED-----VSSYVMLSNALSVAGKWDN  461 (521)
Q Consensus       395 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~  461 (521)
                      +|.+.+++.. ..| +...+..+...+...|+   +++|+..++++++..   |+.     ..+|..++..|...|++++
T Consensus       160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            9999998853 334 46788888888888888   888999999999865   432     2588899999999999999


Q ss_pred             HHHHHHHHHhC
Q 009967          462 VSNIRREMKEK  472 (521)
Q Consensus       462 A~~~~~~m~~~  472 (521)
                      |...+++..+.
T Consensus       240 A~~~~~~al~~  250 (272)
T 3u4t_A          240 ADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=5.3e-13  Score=126.82  Aligned_cols=224  Identities=10%  Similarity=0.036  Sum_probs=191.9

Q ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhHHHHHHHHH
Q 009967          241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS-MEDSLLVFDKLTE---RNIVTWNAVICGY  316 (521)
Q Consensus       241 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~  316 (521)
                      ..+..+..++...|+++.|...++.+++..+. +..+|+.+..++...|+ +++|+..|+++.+   .+...|..+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            34666777788899999999999999998776 78889999999999997 9999999999875   4667999999999


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh-cCCHHH
Q 009967          317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR-SGRFKE  395 (521)
Q Consensus       317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~  395 (521)
                      ...|++++|+..|+++.+.. +-+...|..+..++...|++++|...++++....+  .+...|+.+..+|.+ .|..++
T Consensus       177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--RNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999999854 33667899999999999999999999999986665  467789999999999 666577


Q ss_pred             H-----HHHHhhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC---------
Q 009967          396 A-----KEFLYDL-PFDP-GIGFWKALLGGCQIHS--NVELGEFAARRILALDPEDVSSYVMLSNALSVAG---------  457 (521)
Q Consensus       396 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------  457 (521)
                      |     ++.+++. ...| +...|..+...+...|  ++++|++.++++ +.+|+++.++..++.+|.+.|         
T Consensus       254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence            7     4666653 3344 5668999999888888  699999999998 889999999999999999874         


Q ss_pred             ChHHHHHHHHHH
Q 009967          458 KWDNVSNIRREM  469 (521)
Q Consensus       458 ~~~~A~~~~~~m  469 (521)
                      .+++|+.+++++
T Consensus       333 ~~~~A~~~~~~l  344 (382)
T 2h6f_A          333 ILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            358999999997

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=7.7e-13  Score=120.57  Aligned_cols=225  Identities=12%  Similarity=-0.005  Sum_probs=153.0

Q ss_pred             chhHHHHHHHHHcCCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009967          174 VVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQ----TGRNEEAVNLFIEMLREGLVPNHSTLPCAII  248 (521)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  248 (521)
                      ..++..+...+...|++++|+..|++..++ +..++..+...|..    .+++++|...|++..+.+   +..       
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------   75 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN-------   75 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-------
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH-------
Confidence            344555666666666666666666665543 56677888888888    899999999998887754   333       


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----c
Q 009967          249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK----CGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQ----N  319 (521)
Q Consensus       249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~  319 (521)
                                                  .+..+..+|..    .+++++|...|++..+ .+...+..+...|..    .
T Consensus        76 ----------------------------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~  127 (273)
T 1ouv_A           76 ----------------------------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT  127 (273)
T ss_dssp             ----------------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred             ----------------------------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence                                        33444444555    5555555555555543 344556666666666    7


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cC
Q 009967          320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH----TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SG  391 (521)
Q Consensus       320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g  391 (521)
                      +++++|...|++..+.+   +...+..+...+..    .+++++|...|++..+ .+   ++..+..+..+|..    .+
T Consensus       128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~  200 (273)
T 1ouv_A          128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATK  200 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCC
T ss_pred             cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCc
Confidence            77777777777777654   45556666666666    7788888888877753 22   45667777777777    78


Q ss_pred             CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 009967          392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       392 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      ++++|.+.+++.....+...+..+...+..    .+++++|+..|+++.+.+|++.
T Consensus       201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            888888888764322336677777777877    8899999999999999888543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=1.1e-12  Score=115.44  Aligned_cols=208  Identities=11%  Similarity=0.045  Sum_probs=154.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      +...|..+...+...|++++|.+.|+++....  |+                                  +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~   50 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE   50 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence            34556666777777777777777777766532  32                                  3455666667


Q ss_pred             HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHH
Q 009967          284 FYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQN-GRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVE  358 (521)
Q Consensus       284 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~  358 (521)
                      ++...|++++|.+.|+++.+   .+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|+++
T Consensus        51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (225)
T 2vq2_A           51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG  130 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence            77777777777777776653   3556777788888888 888888888888877333344 457777888888899999


Q ss_pred             HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-D-PGIGFWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      +|...++++....+  .+...+..+..++.+.|++++|...+++.. . + .+...+..+...+...|+.+.|..+++.+
T Consensus       131 ~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          131 LAEAYLKRSLAAQP--QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            99999988875544  346778888899999999999999988743 2 3 46667777777788999999999999999


Q ss_pred             HhcCCCCchHHHHH
Q 009967          436 LALDPEDVSSYVML  449 (521)
Q Consensus       436 ~~~~p~~~~~~~~l  449 (521)
                      .+..|+++.....+
T Consensus       209 ~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          209 QANFPYSEELQTVL  222 (225)
T ss_dssp             HHHCTTCHHHHHHH
T ss_pred             HHhCCCCHHHHHHh
Confidence            99999888766544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.57  E-value=1.2e-13  Score=133.70  Aligned_cols=262  Identities=14%  Similarity=0.101  Sum_probs=136.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhcchHHHHHHHHHHHHc----CCCC-ChhH
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-----STLPCAIIAAANIAALGMGKSFHACAVKF----LGKL-DVFV  277 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  277 (521)
                      +......+...|++++|...|++....+  |+.     ..+..+...+...|+++.|...++.+.+.    +..| ...+
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3444444455555555555555544432  221     23334444444555555555544443322    1111 1334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGR--------------------GEEAIEF  328 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~  328 (521)
                      +..+..+|...|++++|...+++..+     ++    ..++..+...|...|+                    +++|...
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            55555566666666666666655543     11    2355556666666666                    6666666


Q ss_pred             HHHHHH----CCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 009967          329 FERMRI----NGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEF  399 (521)
Q Consensus       329 ~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~  399 (521)
                      +++...    .+..|. ..++..+...+...|++++|...++++....+-.++    ..++..+..+|...|++++|...
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            665433    111111 224555556666666776666666665432221122    12556666666667777766666


Q ss_pred             HhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHHHHHHHHhcCChHHHHHH
Q 009967          400 LYDLP----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPED------VSSYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       400 ~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      +++..    ..++    ..++..+...+...|++++|...++++++..+..      ..++..++.+|...|++++|...
T Consensus       250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            65531    0111    2355556666666677777777777666643321      44666667777777777777766


Q ss_pred             HHHHHh
Q 009967          466 RREMKE  471 (521)
Q Consensus       466 ~~~m~~  471 (521)
                      +++..+
T Consensus       330 ~~~al~  335 (406)
T 3sf4_A          330 AEKHLE  335 (406)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.56  E-value=4.8e-14  Score=136.86  Aligned_cols=263  Identities=12%  Similarity=0.046  Sum_probs=178.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhcchHHHHHHHHHHHHc----C-CCCChhH
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-----STLPCAIIAAANIAALGMGKSFHACAVKF----L-GKLDVFV  277 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~  277 (521)
                      +..+...+...|++++|...|+++.+.+  |+.     ..+..+..++...|+++.|...++.+.+.    + ......+
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            3344555566666666666666665542  332     24455555666666666666666655443    1 1113455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHH
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTE-----R----NIVTWNAVICGYAQNGR-----------------GEEAIEFFER  331 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~-----------------~~~A~~~~~~  331 (521)
                      +..+..+|...|++++|...|++..+     .    ...++..+...|...|+                 +++|...+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            66777778888888888888777653     1    23467777888888888                 8888888877


Q ss_pred             HHHC----CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967          332 MRIN----GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYD  402 (521)
Q Consensus       332 m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  402 (521)
                      ..+.    +-.| ...++..+...+...|++++|...+++.....+-..+    ..++..+..+|...|++++|...+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            6441    1112 1236777777888889999999888887643321122    22677888889999999999988876


Q ss_pred             CC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          403 LP-F---DPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       403 ~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      .. .   ..+    ..++..+...+...|++++|...++++++..+.      ...++..++.+|...|++++|...+++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            42 1   111    346777888899999999999999999886433      245888899999999999999999998


Q ss_pred             HHhC
Q 009967          469 MKEK  472 (521)
Q Consensus       469 m~~~  472 (521)
                      ..+.
T Consensus       369 al~~  372 (411)
T 4a1s_A          369 HLQL  372 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=7.1e-13  Score=112.88  Aligned_cols=165  Identities=15%  Similarity=0.048  Sum_probs=137.4

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967          305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV  384 (521)
Q Consensus       305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  384 (521)
                      ++..|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+....+  .+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence            45678888888888899999999998887753 23556788888888889999999998888865554  4556777788


Q ss_pred             HHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967          385 DLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV  462 (521)
Q Consensus       385 ~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  462 (521)
                      ..+...++++.|...+.+.. . +.+...+..+...+...|++++|++.|+++++.+|+++.+|..++.+|.+.|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            88888999999998887742 2 445678888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 009967          463 SNIRREMKEK  472 (521)
Q Consensus       463 ~~~~~~m~~~  472 (521)
                      +..|++..+.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999998765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=8.6e-14  Score=130.64  Aligned_cols=263  Identities=13%  Similarity=0.090  Sum_probs=186.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhcchHHHHHHHHHHHHc----CCC-CChhH
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-----STLPCAIIAAANIAALGMGKSFHACAVKF----LGK-LDVFV  277 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~  277 (521)
                      +......+...|++++|...|+++....  |+.     ..+..+...+...|+++.|...++.+.+.    +.. ....+
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3444556666677777777776666642  332     34555666666667777776666665432    111 12456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGR--------------------GEEAIEF  328 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~  328 (521)
                      +..+...+...|++++|...+++..+     ++    ..++..+...+...|+                    +++|...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            67778888888888888888887653     22    2377778888888888                    8888888


Q ss_pred             HHHHHHC----CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 009967          329 FERMRIN----GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEF  399 (521)
Q Consensus       329 ~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~  399 (521)
                      +++....    +..| ...++..+...+...|++++|...++++....+..++    ..++..+...+...|++++|...
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8876541    1112 1236777788889999999999999887633221122    23678889999999999999999


Q ss_pred             HhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHH
Q 009967          400 LYDLP----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DVSSYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       400 ~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      +++..    ..++    ..++..+...+...|++++|...++++++..|.      ...++..++.+|.+.|++++|...
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            88742    1122    446777888899999999999999999886543      245788999999999999999999


Q ss_pred             HHHHHhC
Q 009967          466 RREMKEK  472 (521)
Q Consensus       466 ~~~m~~~  472 (521)
                      +++..+.
T Consensus       326 ~~~a~~~  332 (338)
T 3ro2_A          326 AEKHLEI  332 (338)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.55  E-value=3.5e-14  Score=129.48  Aligned_cols=241  Identities=12%  Similarity=-0.012  Sum_probs=142.8

Q ss_pred             CChHHHHHHHHHhHHCCCC---CChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHH
Q 009967           87 HHYEEAIYLFSRMLLLNIR---PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT  163 (521)
Q Consensus        87 g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  163 (521)
                      |++++|+..|+++.+....   .+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence            4444555555544443110   122334444444444455555555555444432 223444444444444444444444


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 009967          164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL  243 (521)
Q Consensus       164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  243 (521)
                      ..|+++.+                            +...+..++..+..+|...|++++|...|+++...  .|+....
T Consensus        98 ~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~  147 (275)
T 1xnf_A           98 EAFDSVLE----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFR  147 (275)
T ss_dssp             HHHHHHHH----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HHHHHHHh----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHH
Confidence            44443321                            00124566777777777777777777777777764  3555555


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHH
Q 009967          244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-------IVTWNAVICGY  316 (521)
Q Consensus       244 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~  316 (521)
                      ...+..+...|+++.|...+......... +...+ .++..+...++.++|...+....+.+       ..+|..+...|
T Consensus       148 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~  225 (275)
T 1xnf_A          148 SLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY  225 (275)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence            55555556667788888777777665433 33333 36777778888899999998887632       46788889999


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967          317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF  364 (521)
Q Consensus       317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  364 (521)
                      ...|++++|...|+++....  |+..  .....++...|++++|.+.+
T Consensus       226 ~~~g~~~~A~~~~~~al~~~--p~~~--~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          226 LSLGDLDSATALFKLAVANN--VHNF--VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC--CTTC--HHHHHHHHHHHHHHHC----
T ss_pred             HHcCCHHHHHHHHHHHHhCC--chhH--HHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999998753  5332  22244667788888888776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=1.3e-13  Score=135.95  Aligned_cols=208  Identities=11%  Similarity=-0.027  Sum_probs=175.1

Q ss_pred             hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM-EDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      ++.+...++....... .+...+..+..++...|++ ++|.+.|++..+   .+...|..+...|...|++++|...|++
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444433322 3677888888889999999 999999998864   3467899999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhh---------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc--------CCHH
Q 009967          332 MRINGIRPNGVTLLGLLWACNHT---------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS--------GRFK  394 (521)
Q Consensus       332 m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~  394 (521)
                      ..+.  .|+...+..+..++...         |++++|...++++....+  .+...|..+..+|...        |+++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            9875  48878888898999998         999999999999986654  4577899999999998        9999


Q ss_pred             HHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          395 EAKEFLYDLP-FDP----GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       395 ~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      +|.+.|++.. ..|    +...|..+..++...|++++|++.|+++++.+|+++.++..++.++...|++++|+..+.+
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998853 345    7789999999999999999999999999999999999999999999999999999975543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=6.1e-13  Score=128.63  Aligned_cols=95  Identities=12%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC----hhhHHHHHHHHcCCCChHHHHHHHHHHHHh----CCCC-cHH
Q 009967           74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS----EFTFGSVIPSSTALEDLNLGKQLHAWATKV----GLQS-NVF  144 (521)
Q Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  144 (521)
                      ..+......+...|++++|...|++..+.+ +.+    ...+..+...+...|++++|...++.+.+.    +..| ...
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            344556666777777777777777777653 222    235556666667777777777777765543    1111 234


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967          145 VGSAILDLYIKLSSIEEATRVFEDT  169 (521)
Q Consensus       145 ~~~~l~~~~~~~g~~~~a~~~~~~~  169 (521)
                      ++..+...|...|++++|...+++.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~a  113 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRH  113 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555666666666666666665554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.49  E-value=8.8e-11  Score=119.08  Aligned_cols=407  Identities=10%  Similarity=0.000  Sum_probs=272.9

Q ss_pred             HHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCC---hHHHHHHHHHhHH
Q 009967           32 QKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHH---YEEAIYLFSRMLL  101 (521)
Q Consensus        32 ~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~  101 (521)
                      ..+-..+.+.. ...+    +++.+.+.|+++.|..+|+++..   .....|...+..-.+.|+   ++.+..+|++...
T Consensus        53 ~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~  131 (679)
T 4e6h_A           53 GKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS  131 (679)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence            34444444544 4454    88888888999999999988653   355678888888888888   9999999999987


Q ss_pred             CC-CCCChhhHHHHHHHHcCCCCh--------HHHHHHHHHHHH-hCC-CC-cHHHHHHHHHHHHc---------CCCHH
Q 009967          102 LN-IRPSEFTFGSVIPSSTALEDL--------NLGKQLHAWATK-VGL-QS-NVFVGSAILDLYIK---------LSSIE  160 (521)
Q Consensus       102 ~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~  160 (521)
                      .. .+|+...|...+....+.++.        +.+.++|+..+. .|. .+ +...|...+.....         .++++
T Consensus       132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~  211 (679)
T 4e6h_A          132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ  211 (679)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence            53 137888887776654433332        345578887665 365 44 35678777766543         34577


Q ss_pred             HHHHHhhcCCC-CCc---hhH---HHHHHHHH----------cCCCHHHHHHHHhh-------CCC--------------
Q 009967          161 EATRVFEDTHN-PNV---VSY---TTMICGLL----------KRERFEDALKLFQE-------MPH--------------  202 (521)
Q Consensus       161 ~a~~~~~~~~~-~~~---~~~---~~li~~~~----------~~g~~~~a~~~~~~-------~~~--------------  202 (521)
                      .+..+|+++.. |..   .+|   ..+...+.          ...+++.|...+.+       +.+              
T Consensus       212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~  291 (679)
T 4e6h_A          212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL  291 (679)
T ss_dssp             HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence            88899988876 321   222   22222110          01123334444433       111              


Q ss_pred             C--C------hhHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHH-HHHHHH
Q 009967          203 R--N------VVSWNAMIGGYSQTG-------RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK-SFHACA  266 (521)
Q Consensus       203 ~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~  266 (521)
                      |  +      ...|...+..--..+       ..+.+..+|++.+.. ++-....|...+.-+...|+.+.|. .+++.+
T Consensus       292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA  370 (679)
T 4e6h_A          292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLG  370 (679)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            0  0      134555555433332       124456778887764 3346667777777778888888886 999999


Q ss_pred             HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhHHHHHHHHHHHcCC
Q 009967          267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-------------RN------------IVTWNAVICGYAQNGR  321 (521)
Q Consensus       267 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~  321 (521)
                      ....+ .+...+..++....+.|+++.|.++|+++.+             |+            ..+|...+....+.|+
T Consensus       371 i~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~  449 (679)
T 4e6h_A          371 QQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG  449 (679)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence            87654 3666777788888899999999999998764             21            2357777887788899


Q ss_pred             hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh-hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967          322 GEEAIEFFERMRIN-GIRPNGVTLLGLLWACNH-TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF  399 (521)
Q Consensus       322 ~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  399 (521)
                      .+.|..+|.++.+. + .+....|...+..-.+ .++.+.|..+|+...+..+  .++..+...++.....|+.+.|..+
T Consensus       450 l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~l  526 (679)
T 4e6h_A          450 LAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSL  526 (679)
T ss_dssp             HHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999998875 2 1223334333322223 3558999999999886654  4566677888888889999999999


Q ss_pred             HhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          400 LYDLP-FDP----GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       400 ~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                      |++.. ..|    ....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus       527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            99843 233    2347888888888899999999999999999997654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.47  E-value=1.2e-10  Score=118.07  Aligned_cols=401  Identities=9%  Similarity=-0.006  Sum_probs=278.3

Q ss_pred             CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCC---hHHHHHHHHHHHHhC-CCCcHHHH
Q 009967           71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED---LNLGKQLHAWATKVG-LQSNVFVG  146 (521)
Q Consensus        71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~  146 (521)
                      .|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++   ++.+..+|+..+... .+|++..|
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            47889999999999999999999999999986 45667778888888788888   999999999998754 24888888


Q ss_pred             HHHHHHHHcCCCH--------HHHHHHhhcCC------CC-CchhHHHHHHHHHc---------CCCHHHHHHHHhhCCC
Q 009967          147 SAILDLYIKLSSI--------EEATRVFEDTH------NP-NVVSYTTMICGLLK---------RERFEDALKLFQEMPH  202 (521)
Q Consensus       147 ~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~  202 (521)
                      ...+....+.++.        +...++|+...      .+ +...|...+.-...         .++++.+..+|++...
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence            8887766655543        33446776543      23 33567776655432         3457788999998775


Q ss_pred             -C--Ch-hHHHH---HHHHH----------HhcCChHHHHHHHHHHHHC--CCC---CCh--------------------
Q 009967          203 -R--NV-VSWNA---MIGGY----------SQTGRNEEAVNLFIEMLRE--GLV---PNH--------------------  240 (521)
Q Consensus       203 -~--~~-~~~~~---l~~~~----------~~~~~~~~a~~~~~~m~~~--~~~---p~~--------------------  240 (521)
                       |  +. .+|..   +....          -...+++.|...+.++...  ++.   |..                    
T Consensus       223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql  302 (679)
T 4e6h_A          223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL  302 (679)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence             2  11 23322   21111          0112344455555554321  111   110                    


Q ss_pred             hhHHHHHHHHHhhc-------chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhhcCC--C-ChhHH
Q 009967          241 STLPCAIIAAANIA-------ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL-LVFDKLTE--R-NIVTW  309 (521)
Q Consensus       241 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~  309 (521)
                      ..|...+.---..+       ..+.+..+|++++...+. ...+|...+..+.+.|+.++|. .+|++...  | +...|
T Consensus       303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw  381 (679)
T 4e6h_A          303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA  381 (679)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence            11222222211111       123456778888877554 7788888888888899998996 99998875  3 44567


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          310 NAVICGYAQNGRGEEAIEFFERMRING---------IRPN------------GVTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       310 ~~li~~~~~~~~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                      -..+...-+.|++++|.++|+++....         -.|+            ...|...+....+.|+.+.|+.+|.++.
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            778888889999999999999987631         0142            2357777777788899999999999997


Q ss_pred             HhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C
Q 009967          369 LEDPGMLKPEHYACMVDLLSRSG-RFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE---D  442 (521)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~  442 (521)
                      +..+ ......|...+..-.+.| +.+.|..+|+...  .+.+...|...+......|+.+.|..+|++++...|+   .
T Consensus       462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~  540 (679)
T 4e6h_A          462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL  540 (679)
T ss_dssp             HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred             HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            4412 123345554444444554 5899999998742  2445667888888888899999999999999998873   5


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      ...|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus       541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            67889999999999999999999999987643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=4.2e-12  Score=108.05  Aligned_cols=167  Identities=11%  Similarity=0.022  Sum_probs=140.0

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      ++.+|..+..+|.+.|++++|.+.|++..+   .++.+|..+..+|...|++++|...+....... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            567788889999999999999999998764   456788889999999999999999999987753 3355677777778


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      +...++++.+...+.++....+  .+...+..+..+|.+.|++++|++.+++.. . +.+..+|..+..++...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            8899999999999999875554  456778889999999999999999998743 2 44577899999999999999999


Q ss_pred             HHHHHHHHhcCCCCc
Q 009967          429 EFAARRILALDPEDV  443 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~  443 (521)
                      ++.|+++++.+|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999998654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.45  E-value=1.1e-12  Score=122.90  Aligned_cols=277  Identities=11%  Similarity=0.012  Sum_probs=150.2

Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHc
Q 009967          111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK  186 (521)
Q Consensus       111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~  186 (521)
                      +......+...|++++|...++.+.+.. +.+    ...+..+...|...|++++|...+++..+               
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------   71 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT---------------   71 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence            3334445666777777777777777653 222    24556666666677777777666655421               


Q ss_pred             CCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhhcc----
Q 009967          187 RERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPN----HSTLPCAIIAAANIAA----  255 (521)
Q Consensus       187 ~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~----  255 (521)
                               +......  ....++..+...+...|++++|...+++...... .++    ..++..+...+...|+    
T Consensus        72 ---------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  142 (338)
T 3ro2_A           72 ---------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC  142 (338)
T ss_dssp             ---------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             ---------HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence                     1111111  1234566666777777777777777766554210 011    1133344444444444    


Q ss_pred             ----------------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHH
Q 009967          256 ----------------LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYA  317 (521)
Q Consensus       256 ----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~  317 (521)
                                      ++.|...++...+.                            +.....  ....++..+...+.
T Consensus       143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~  194 (338)
T 3ro2_A          143 PGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHY  194 (338)
T ss_dssp             SSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHH
Confidence                            44444333332211                            000000  01224555555666


Q ss_pred             HcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHH
Q 009967          318 QNGRGEEAIEFFERMRINGI-RPN----GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLS  388 (521)
Q Consensus       318 ~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~  388 (521)
                      ..|++++|...+++..+... .++    ..++..+...+...|++++|...+++.....+...+    ..++..+..+|.
T Consensus       195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            66666666666665543100 011    225566666677777777777777665432211111    345667777777


Q ss_pred             hcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          389 RSGRFKEAKEFLYDLP-F---DPG----IGFWKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       389 ~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      ..|++++|...+++.. .   .++    ..++..+...+...|++++|...+++++++.+
T Consensus       275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            7788777777776632 0   111    33666777788888899999999988888765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.45  E-value=1e-12  Score=127.48  Aligned_cols=265  Identities=14%  Similarity=0.068  Sum_probs=157.1

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh----hhHHHHHHHHcCCCChHHHHHHHHHHHHhC-----CCCcHHH
Q 009967           75 SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE----FTFGSVIPSSTALEDLNLGKQLHAWATKVG-----LQSNVFV  145 (521)
Q Consensus        75 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~  145 (521)
                      .+..+...+...|++++|+..|++..+.+ +.+.    ..+..+...+...|++++|...+++..+..     .+.....
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            34456667788888888888888887753 2222    356677777778888888888888776531     1223456


Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCC-----C----CchhHHHHHHHHHcCCC-----------------HHHHHHHHhh
Q 009967          146 GSAILDLYIKLSSIEEATRVFEDTHN-----P----NVVSYTTMICGLLKRER-----------------FEDALKLFQE  199 (521)
Q Consensus       146 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~  199 (521)
                      +..+...|...|++++|...+++..+     .    ...++..+...|...|+                 +++|++.+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            67777778888888888887766543     1    11234444444555555                 4444444443


Q ss_pred             CCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 009967          200 MPH-----R----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL  270 (521)
Q Consensus       200 ~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  270 (521)
                      ..+     .    ...++..+...|...|++++|...+++.....  ++                             .+
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-----------------------------~~  257 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--RE-----------------------------FG  257 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------------------------HT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh-----------------------------cC
Confidence            321     0    11244444555555555555555554443311  00                             00


Q ss_pred             C-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----C
Q 009967          271 G-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN----G  336 (521)
Q Consensus       271 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~  336 (521)
                      . .....++..+..+|...|++++|...|++..+     .+    ..++..+...+...|++++|...+++....    +
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            0 00122556666777777777777777766553     11    346667777777888888888887776542    1


Q ss_pred             CCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhC
Q 009967          337 IRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLED  371 (521)
Q Consensus       337 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  371 (521)
                      ..+ ...++..+..++...|++++|...+++.....
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            111 12366677777888888888888888776443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.45  E-value=3.6e-11  Score=111.55  Aligned_cols=217  Identities=9%  Similarity=0.009  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hhcch-------HHHHHHHHHHHHc-CCCCChhHHHHHHHHHH
Q 009967          222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAA-------NIAAL-------GMGKSFHACAVKF-LGKLDVFVGNSLISFYA  286 (521)
Q Consensus       222 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~  286 (521)
                      ++|..+|++..... +-+...|......+.       ..|++       +.|..+++.+++. .+ -+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            45666666666532 223334444444333       23443       5555555555552 22 24455666666666


Q ss_pred             hcCCHHHHHHHHhhcCC--CC-hh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhhccHHHHH
Q 009967          287 KCGSMEDSLLVFDKLTE--RN-IV-TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-NHTGLVEKGY  361 (521)
Q Consensus       287 ~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~  361 (521)
                      +.|++++|.++|+++.+  |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666554  22 22 56666666666666666666666666532 12233333222221 1246666666


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDP--GIGFWKALLGGCQIHSNVELGEFAARRI  435 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~  435 (521)
                      .+|+++....+  .++..|..++..+.+.|++++|..+|++..    .+|  ....|..++......|+.+.|..+++++
T Consensus       190 ~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          190 KIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666654443  244556666666666666666666666532    122  2445666666666666666666666666


Q ss_pred             HhcCCCCc
Q 009967          436 LALDPEDV  443 (521)
Q Consensus       436 ~~~~p~~~  443 (521)
                      .+..|+++
T Consensus       268 ~~~~p~~~  275 (308)
T 2ond_A          268 FTAFREEY  275 (308)
T ss_dssp             HHHTTTTT
T ss_pred             HHHccccc
Confidence            66666533

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.45  E-value=1.2e-12  Score=125.59  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHh---CCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-----CCC-HHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLE---DPG-MLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-----DPG-IGF  411 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-----~~~-~~~  411 (521)
                      ++..+..+|...|++++|...+++....   .+. +....++..+..+|.+.|++++|...+++.. .     .|. ...
T Consensus       226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  305 (383)
T 3ulq_A          226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE  305 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4444445555555555555555544321   011 1123345555555555555555555554421 0     111 112


Q ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          412 WKALLGGCQIHSN---VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       412 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      +..+...+...|+   +++|+.++++. ...|....++..++..|...|++++|...+++..+
T Consensus       306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3344444555555   55555555554 22222444566667777777777777777666543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.42  E-value=2.4e-12  Score=123.55  Aligned_cols=288  Identities=13%  Similarity=0.056  Sum_probs=208.9

Q ss_pred             HHcCCCHHHHHHHhhcCCC--------CCchhHHHHHHH--HHcCCCHHHHH-----------HHHhhCCC-C-ChhH--
Q 009967          153 YIKLSSIEEATRVFEDTHN--------PNVVSYTTMICG--LLKRERFEDAL-----------KLFQEMPH-R-NVVS--  207 (521)
Q Consensus       153 ~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~-~-~~~~--  207 (521)
                      +.+.+++++|..+++++.+        ++...|..++..  ....++++.+.           +.++.+.. + +...  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            4578999999999988753        222233333322  11223333333           45554432 1 1111  


Q ss_pred             ----HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-----
Q 009967          208 ----WNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPN----HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-----  273 (521)
Q Consensus       208 ----~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----  273 (521)
                          +......+...|++++|...|++....- -.++    ..++..+..++...|+++.|...+..+.+.....     
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence                2235677889999999999999998741 1132    3567788899999999999999999988752221     


Q ss_pred             -ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC
Q 009967          274 -DVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNI----VTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRP  339 (521)
Q Consensus       274 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p  339 (521)
                       ...+++.+..+|...|++++|...|++..+     ++.    .++..+...|...|++++|...+++..+.    +..|
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence             235788889999999999999999998874     222    37888999999999999999999998762    3323


Q ss_pred             -CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh---hHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCH-HH
Q 009967          340 -NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP---EHYACMVDLLSRSGR---FKEAKEFLYDLPFDPGI-GF  411 (521)
Q Consensus       340 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~  411 (521)
                       ...++..+..++...|++++|...+++.........++   ..+..+...|...|+   +++|..++++....|+. ..
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  341 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF  341 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence             35578889999999999999999999986432211222   235678888999999   89999999998644443 36


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          412 WKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      +..+...|...|++++|...++++++...
T Consensus       342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            77788889999999999999999988543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.42  E-value=5.6e-13  Score=123.75  Aligned_cols=236  Identities=15%  Similarity=0.122  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc------CC
Q 009967          205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-------GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF------LG  271 (521)
Q Consensus       205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~  271 (521)
                      ..++..+...+...|++++|..+++++...       ........+..+...+...|+++.|...++.+.+.      +.
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            467888888889999999999998888762       11112233444445555555555555555554432      11


Q ss_pred             -CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 009967          272 -KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN------GIRP-NGVT  343 (521)
Q Consensus       272 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~  343 (521)
                       .....                               ++..+...|...|++++|...++++.+.      +-.| ....
T Consensus       107 ~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (311)
T 3nf1_A          107 HPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ  155 (311)
T ss_dssp             CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence             11123                               3444445555555555555555554432      1112 1224


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHchHhC-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC----------CCC
Q 009967          344 LLGLLWACNHTGLVEKGYSYFSQAKLED-----PGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP----------FDP  407 (521)
Q Consensus       344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~  407 (521)
                      +..+...+...|++++|..+++++....     +..| ...++..+..+|...|++++|.+.+++..          ..+
T Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  235 (311)
T 3nf1_A          156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD  235 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            4455555556666666666665554220     1011 12345555666666666666666655431          001


Q ss_pred             C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          408 G-------IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       408 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      .       ...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|..++++..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1       111222223344556666777777777777777888888889999999999999888888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=5.3e-11  Score=110.37  Aligned_cols=213  Identities=10%  Similarity=0.019  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 009967          257 GMGKSFHACAVKFLGKLDVFVGNSLISFYA-------KCGSM-------EDSLLVFDKLTE---R-NIVTWNAVICGYAQ  318 (521)
Q Consensus       257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~  318 (521)
                      +.|..+|+.+++..+. ++..|..++..+.       +.|++       ++|..+|++..+   | +...|..++..+..
T Consensus        33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            5777888888886544 7778888887775       35885       899999998865   3 44589999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH-hcCCHHH
Q 009967          319 NGRGEEAIEFFERMRINGIRPNG-V-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS-RSGRFKE  395 (521)
Q Consensus       319 ~~~~~~A~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~  395 (521)
                      .|++++|..+|+++.+.  .|+. . .|..++..+.+.|++++|..+|+++....+  .+...|...+.... ..|++++
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999984  4643 3 788889999999999999999999974443  34455554444432 3699999


Q ss_pred             HHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          396 AKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL---DPE-DVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       396 A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      |..+|++.. . +.+...|..++..+...|++++|+.+|++++..   .|+ ....|..++..+.+.|+.++|..+++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999998852 2 346778999999999999999999999999995   453 6778999999999999999999999998


Q ss_pred             HhCCC
Q 009967          470 KEKGM  474 (521)
Q Consensus       470 ~~~g~  474 (521)
                      .+...
T Consensus       268 ~~~~p  272 (308)
T 2ond_A          268 FTAFR  272 (308)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            87644

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=2e-11  Score=103.53  Aligned_cols=161  Identities=13%  Similarity=0.070  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS  388 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (521)
                      |..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++....+  .+...+..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence            3334444444455555555444443321 12334444445555555555555555555543322  23445555555566


Q ss_pred             hcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 009967          389 RSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR  466 (521)
Q Consensus       389 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  466 (521)
                      ..|++++|.+.+++..  .+.+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|...+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6666666666555431  13345566777777788888888888888888888888888888888888888888888888


Q ss_pred             HHHHhC
Q 009967          467 REMKEK  472 (521)
Q Consensus       467 ~~m~~~  472 (521)
                      ++..+.
T Consensus       168 ~~~~~~  173 (186)
T 3as5_A          168 KKANEL  173 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            887654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.40  E-value=3.2e-10  Score=108.27  Aligned_cols=263  Identities=11%  Similarity=-0.048  Sum_probs=166.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-C----hhHHHH
Q 009967          210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS----TLPCAIIAAANIAALGMGKSFHACAVKFLGKL-D----VFVGNS  280 (521)
Q Consensus       210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~  280 (521)
                      .....+...|++++|...+++........+..    .+..+...+...|+++.|...+....+..... +    ..++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34445566677777777777766543111111    23444555666777777777776665432111 1    223455


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTE-------R----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR--P--NGVTLL  345 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~  345 (521)
                      +...+...|++++|...+++..+       +    ....+..+...+...|++++|...+++.....-.  +  ...++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            67777888888888888776653       1    1234566777788888888888888887653211  1  234566


Q ss_pred             HHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHhhCC-CCCC-----HHHHHH
Q 009967          346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-----CMVDLLSRSGRFKEAKEFLYDLP-FDPG-----IGFWKA  414 (521)
Q Consensus       346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~  414 (521)
                      .+...+...|++++|...+++..........+..+.     ..+..+...|++++|...+++.. ..|.     ...+..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            777778888888888888888753321111111111     23344778888888888888753 1221     224566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          415 LLGGCQIHSNVELGEFAARRILALDPE------DVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       415 l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +...+...|++++|...++++....+.      ...++..++.++...|++++|...+++....
T Consensus       259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            677788889999999888888774322      1236777788888889999998888887643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.39  E-value=1.2e-11  Score=126.77  Aligned_cols=162  Identities=15%  Similarity=0.182  Sum_probs=133.0

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967          306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV  384 (521)
Q Consensus       306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  384 (521)
                      ..+|+.+...|.+.|++++|++.|++..+.  .|+ ..++..+..++...|++++|...|+++.+..+  -+...|..+.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg   84 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence            456777888888888888888888887774  344 56788888888888888888888888875554  3466788888


Q ss_pred             HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967          385 DLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV  462 (521)
Q Consensus       385 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  462 (521)
                      .+|.+.|++++|++.|++. ...| +...|..+..++...|++++|++.|+++++++|+++.++..++.++...|++++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            8888888888888888874 2344 4668889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 009967          463 SNIRREMKE  471 (521)
Q Consensus       463 ~~~~~~m~~  471 (521)
                      .+.+++..+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=2.1e-11  Score=107.65  Aligned_cols=190  Identities=11%  Similarity=-0.008  Sum_probs=112.1

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLL  348 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll  348 (521)
                      ++..+......+.+.|++++|...|++..+    ++...+..+..++...|++++|...+++..+.  .|+ ...+..+.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            445666666667777777777777766543    44555555666677777777777777776653  243 34566666


Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKP-----EHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG---IGFWKALLGGC  419 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~  419 (521)
                      .++...|++++|...++++....+-.+..     ..|..+...+...|++++|++.+++. ...|+   ...|..+...+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            66677777777777777666444422211     34555666666666666666666653 33444   23455555555


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ..     .+...++++..+.+.++..|...  .....+.+++|+..+++..+.
T Consensus       164 ~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          164 YN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            33     23344555555555444443332  233445569999999997754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.38  E-value=1.4e-10  Score=111.05  Aligned_cols=162  Identities=10%  Similarity=0.026  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhC---CCCCChhH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRIN----GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLED---PGMLKPEH  379 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~  379 (521)
                      +++.+...|...|++++|...+++..+.    +-.+ ...++..+..++...|++++|...+++.....   +.+....+
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            3444444455555555555555444331    1000 11244445555555555555555555544200   11112334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHH
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDLP----F--DPG-IGFWKALLGGCQIHSN---VELGEFAARRILALDPEDVSSYVML  449 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l  449 (521)
                      +..+..+|.+.|++++|...+++..    .  .|. ...+..+...+...++   +++|+..+++. ...|.....+..+
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l  342 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence            5555555555555555555555421    0  121 1133333334444455   55555555542 1122234455566


Q ss_pred             HHHHHhcCChHHHHHHHHHHH
Q 009967          450 SNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       450 ~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +..|...|++++|...+++..
T Consensus       343 a~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            666666666666666666654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=6.5e-11  Score=104.47  Aligned_cols=205  Identities=12%  Similarity=0.019  Sum_probs=161.7

Q ss_pred             CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHH
Q 009967          238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVIC  314 (521)
Q Consensus       238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~  314 (521)
                      .|+..+......+...|+++.|...++.+.+..++++...+..+..++...|++++|...|++..+  | +...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            456778888899999999999999999999998756778888899999999999999999999875  3 4568899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC---hhHHHHHH
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRPNG-------VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK---PEHYACMV  384 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~  384 (521)
                      ++...|++++|...+++..+.. +.+.       ..+..+...+...|++++|...|+++....   |+   ...+..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l~  160 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHHH
Confidence            9999999999999999998853 2234       457777788899999999999999987433   44   56788888


Q ss_pred             HHHHhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          385 DLLSRSGRF--KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       385 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      .+|...|+.  +++..    +. ..+...+....  ....+.+++|+..++++++++|+++.+...+....
T Consensus       161 ~~~~~~~~~~~~~a~~----~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          161 VLFYNNGADVLRKATP----LA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHGG----GT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh----cc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            888776654  22222    21 33344444333  34557799999999999999999988877776653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=2.2e-11  Score=120.04  Aligned_cols=218  Identities=13%  Similarity=-0.037  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh-HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhh
Q 009967           89 YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL-NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE  167 (521)
Q Consensus        89 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  167 (521)
                      +++++..++...... +.+...+..+...+...|++ ++|++.|+..++.. +.+...|..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            455556666554432 34566666677777777777 77777777777754 4446677777777777777777777776


Q ss_pred             cCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 009967          168 DTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC  245 (521)
Q Consensus       168 ~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  245 (521)
                      +..+  |+...+..+...+...+.-                      ....+.|++++|+..|++..+.. +.+...+..
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~  218 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTD----------------------SGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYI  218 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCS----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccC----------------------ChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            6654  4434444444444444000                      00000055555555555554432 122344444


Q ss_pred             HHHHHHhh--------cchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHH
Q 009967          246 AIIAAANI--------AALGMGKSFHACAVKFLGK--LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAV  312 (521)
Q Consensus       246 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l  312 (521)
                      +..++...        |++++|...++.+.+..+.  .+...+..+..+|...|++++|.+.|++..+   .+...+..+
T Consensus       219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l  298 (474)
T 4abn_A          219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE  298 (474)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44555554        5555555555555554331  2566667777777777777777777776653   334466666


Q ss_pred             HHHHHHcCChHHHHHHHHH
Q 009967          313 ICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       313 i~~~~~~~~~~~A~~~~~~  331 (521)
                      ...+...|++++|.+.+.+
T Consensus       299 ~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          299 QQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            7777777777777665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=119.86  Aligned_cols=237  Identities=14%  Similarity=0.054  Sum_probs=141.6

Q ss_pred             chhHHHHHHHHHcCCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 009967          174 VVSYTTMICGLLKRERFEDALKLFQEMPH--------R---NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE------GL  236 (521)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~  236 (521)
                      ..++..+...+...|++++|...|+++.+        .   ...++..+...|...|++++|...+++....      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            45688899999999999999999998764        1   2457888999999999999999999998764      11


Q ss_pred             CC-ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcC------CCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH
Q 009967          237 VP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFL------GKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT  308 (521)
Q Consensus       237 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  308 (521)
                      .| ....+..+...+...|+++.|...+..+.+..      ..| ....+..+..                         
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-------------------------  161 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL-------------------------  161 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------------
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-------------------------
Confidence            12 34556677778888888888888888776541      111 2233344444                         


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhC------CCCC
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRIN------GIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLED------PGML  375 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~  375 (521)
                            .+...|++++|..+++++.+.      +..|+ ..++..+..++...|++++|...++++....      ...+
T Consensus       162 ------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  235 (311)
T 3nf1_A          162 ------LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD  235 (311)
T ss_dssp             ------HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ------HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence                  444445555555555444332      11122 2245555555666666666666666554211      0011


Q ss_pred             C-hh------HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          376 K-PE------HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       376 ~-~~------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      . ..      .+..+...+...+.+.++...+.... ..| ...++..+...|...|++++|.+.|++++++.|.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            1 11      12222233334445555555555543 123 3447888888999999999999999999987763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=1.2e-10  Score=98.69  Aligned_cols=168  Identities=13%  Similarity=0.040  Sum_probs=143.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC  351 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  351 (521)
                      ...+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            34566778889999999999999999886   356788899999999999999999999988753 34677888888999


Q ss_pred             HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHH
Q 009967          352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      ...|++++|...++++....+  .+...+..+..++...|++++|.+.+++.. . +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999876654  467788899999999999999999998843 2 446778999999999999999999


Q ss_pred             HHHHHHHhcCCCCchH
Q 009967          430 FAARRILALDPEDVSS  445 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~~  445 (521)
                      ..++++++..|+++..
T Consensus       165 ~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          165 PHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHcCCCchhh
Confidence            9999999988876543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.33  E-value=5.7e-11  Score=113.71  Aligned_cols=299  Identities=13%  Similarity=0.124  Sum_probs=213.2

Q ss_pred             CCCcHHHHHHHHHHH--HcCCCHHHHHHHhhcCCC--------CCchhHHHHHHHH--H---cCCCHH---------HHH
Q 009967          139 LQSNVFVGSAILDLY--IKLSSIEEATRVFEDTHN--------PNVVSYTTMICGL--L---KRERFE---------DAL  194 (521)
Q Consensus       139 ~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~--~---~~g~~~---------~a~  194 (521)
                      +.|+..+-+.+-.-|  ...+++++|..+++++..        .+...|..++..-  .   .....+         +..
T Consensus         6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A            6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            446666666666665  789999999999887643        2233334443321  1   111122         333


Q ss_pred             HHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhhcchHHHHHHHH
Q 009967          195 KLFQEMPHRNV-----VSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPN----HSTLPCAIIAAANIAALGMGKSFHA  264 (521)
Q Consensus       195 ~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~  264 (521)
                      +..+....+..     ..+......+...|++++|+..|++..... -.++    ..++..+..++...|+++.|...+.
T Consensus        86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            33333222211     134445667789999999999999987642 1133    3467778889999999999999999


Q ss_pred             HHHHcCCC------CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHH
Q 009967          265 CAVKFLGK------LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFF  329 (521)
Q Consensus       265 ~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~  329 (521)
                      .+.+....      ....+++.+..+|...|++++|.+.|++..+     ++    ..++..+..+|...|++++|...+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            98764221      1245678889999999999999999988764     22    247888999999999999999999


Q ss_pred             HHHHH-----CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC---hhHHHHHHHHHHhcCC---HHHHHH
Q 009967          330 ERMRI-----NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK---PEHYACMVDLLSRSGR---FKEAKE  398 (521)
Q Consensus       330 ~~m~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~  398 (521)
                      ++...     .. +....++..+..++...|++++|...+++.........+   ...+..+...|...|+   +.+|..
T Consensus       246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~  324 (378)
T 3q15_A          246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS  324 (378)
T ss_dssp             HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            99876     32 223567888899999999999999999998755433222   2356667777888888   899999


Q ss_pred             HHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          399 FLYDLPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       399 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      .+++....|+.. .+..+...|...|++++|...|+++++.
T Consensus       325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999866444433 6677888899999999999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.28  E-value=7.6e-09  Score=98.64  Aligned_cols=268  Identities=12%  Similarity=-0.038  Sum_probs=150.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhHHCCCCCChh----hHHHHHHHHcCCCChHHHHHHHHHHHHhCC-CCc----HHHHH
Q 009967           77 TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF----TFGSVIPSSTALEDLNLGKQLHAWATKVGL-QSN----VFVGS  147 (521)
Q Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~  147 (521)
                      ......+...|++++|...+++........+..    .+..+...+...|++++|...+++..+... ..+    ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344455667888999998888877653222221    344555566777888888888887765321 111    22345


Q ss_pred             HHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHH
Q 009967          148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEE  223 (521)
Q Consensus       148 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~  223 (521)
                      .+...+...|++++|...+++..                        +.......+    ....+..+...+...|++++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  153 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAF------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  153 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence            56667777788877777765542                        222222211    12345556677777777777


Q ss_pred             HHHHHHHHHHCCCCC----ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHH
Q 009967          224 AVNLFIEMLREGLVP----NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGN-----SLISFYAKCGSMED  293 (521)
Q Consensus       224 a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~  293 (521)
                      |...+++........    ...++..+...+...|+++.|...++........++. ..+.     ..+..+...|++++
T Consensus       154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  233 (373)
T 1hz4_A          154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA  233 (373)
T ss_dssp             HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence            777777766532111    1123445555666666777776666666543222111 1111     22334667777777


Q ss_pred             HHHHHhhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhhccHHHHH
Q 009967          294 SLLVFDKLTERNI-------VTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRPNG-VTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       294 A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~  361 (521)
                      |...+++..++..       ..+..+...+...|++++|...+++....    |..++. ..+..+..++...|+.++|.
T Consensus       234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  313 (373)
T 1hz4_A          234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ  313 (373)
T ss_dssp             HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            7777777765321       13445566666677777777776665431    111111 13334444555566666666


Q ss_pred             HHHHHch
Q 009967          362 SYFSQAK  368 (521)
Q Consensus       362 ~~~~~~~  368 (521)
                      ..+++..
T Consensus       314 ~~l~~al  320 (373)
T 1hz4_A          314 RVLLDAL  320 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=6e-10  Score=100.53  Aligned_cols=205  Identities=9%  Similarity=-0.037  Sum_probs=140.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN----IVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPN-GVTLL  345 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~  345 (521)
                      +...+..+...+.+.|++++|...|+++.+  |+    ...+..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            455666677777788888888888887764  32    35677777778888888888888888776421 122 33556


Q ss_pred             HHHHHHHh--------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 009967          346 GLLWACNH--------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG  417 (521)
Q Consensus       346 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~  417 (521)
                      .+..++..        .|++++|...|+++....+-.+.  ....+.......+..               ...+..+..
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la~  156 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAAR  156 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence            66666766        78888888888887755543222  222221111111111               112456778


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCcceEEE
Q 009967          418 GCQIHSNVELGEFAARRILALDPED---VSSYVMLSNALSVA----------GKWDNVSNIRREMKEKGMTRVPGCSWIE  484 (521)
Q Consensus       418 ~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~~  484 (521)
                      .+...|++++|+..|+++++..|++   +.++..++.+|...          |++++|...++++.+...          
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------  226 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------  226 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred             HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence            8999999999999999999999984   45889999999877          899999999999876531          


Q ss_pred             ECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 009967          485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE  518 (521)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  518 (521)
                                   .+|........++.+...+++
T Consensus       227 -------------~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          227 -------------DSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CChHHHHHHHHHHHHHHHHHH
Confidence                         345566777777777776654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.22  E-value=7.6e-10  Score=101.63  Aligned_cols=174  Identities=9%  Similarity=-0.035  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC----
Q 009967          276 FVGNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQN-GRGEEAIEFFERMRINGIR-PN----  340 (521)
Q Consensus       276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~-p~----  340 (521)
                      .+++.+..+|.+.|++++|...|++..+     .+    ..+++.+...|... |++++|+..|++..+.... .+    
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~  157 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence            3455566666666666666666655543     11    23566777777775 8888888888876652100 01    


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH----
Q 009967          341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-----EHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIG----  410 (521)
Q Consensus       341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~----  410 (521)
                      ..++..+...+...|++++|...|+++....+-.+..     ..|..+..++...|++++|...+++. ...|+..    
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  237 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            2456777777888888888888888876444322222     14666777788888888888888774 2344322    


Q ss_pred             --HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967          411 --FWKALLGGCQ--IHSNVELGEFAARRILALDPEDVSSYVML  449 (521)
Q Consensus       411 --~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  449 (521)
                        .+..++.++.  ..+++++|+..|+++..++|.....+..+
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~  280 (292)
T 1qqe_A          238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI  280 (292)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence              2334444443  34678888888877777777544444333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=3.5e-10  Score=102.97  Aligned_cols=221  Identities=13%  Similarity=0.100  Sum_probs=152.2

Q ss_pred             HhhcchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHH
Q 009967          251 ANIAALGMGKSFHACAVKF-------LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----------RNIVTWNAV  312 (521)
Q Consensus       251 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l  312 (521)
                      ...|+++.|..+++++.+.       ..+....++..+..+|...|++++|...|+++.+           ....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567777777777776652       2223466788889999999999999999988763           123478888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHh----C-CCCC-ChhH
Q 009967          313 ICGYAQNGRGEEAIEFFERMRIN------GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLE----D-PGML-KPEH  379 (521)
Q Consensus       313 i~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~-~~~~  379 (521)
                      ...|...|++++|...+++....      .-.| ...++..+...+...|++++|..+++++...    . +..| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998763      1123 3457788888899999999999999988644    1 1112 3457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC----------CCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDLP----------FDPG-IGFWKALLGGCQIHS------NVELGEFAARRILALDPED  442 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~  442 (521)
                      +..+..+|.+.|++++|...+++..          ..+. ...|..+...+...+      .+..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            8889999999999999999987642          1222 223333333333322      2333444444333344556


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      +.++..++.+|...|++++|..++++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77899999999999999999999998765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.16  E-value=1.4e-09  Score=98.03  Aligned_cols=203  Identities=9%  Similarity=-0.046  Sum_probs=142.9

Q ss_pred             CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHH
Q 009967          238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN----IVTW  309 (521)
Q Consensus       238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~  309 (521)
                      .+...+......+...|+++.|...++.+.+..+...  ...+..+..+|.+.|++++|...|++..+  |+    ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            3456677778889999999999999999998765421  56788899999999999999999999875  32    3467


Q ss_pred             HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHH
Q 009967          310 NAVICGYAQ--------NGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY  380 (521)
Q Consensus       310 ~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  380 (521)
                      ..+..++..        .|++++|...|+++.+..  |+.. ....+....       .....+            ...+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~-------~~~~~~------------~~~~  151 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR-------ELRAKL------------ARKQ  151 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH-------HHHHHH------------HHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH-------HHHHHH------------HHHH
Confidence            778888888        999999999999998753  4432 221111100       000000            1125


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCch-
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIH----------SNVELGEFAARRILALDPEDVS-  444 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~-  444 (521)
                      ..+..+|.+.|++++|+..|+++. ..|+    ...+..+..++...          |++++|+..|+++++..|+++. 
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            566777888888888888887742 2333    34666666677655          8999999999999999998764 


Q ss_pred             --HHHHHHHHHHhcCChHH
Q 009967          445 --SYVMLSNALSVAGKWDN  461 (521)
Q Consensus       445 --~~~~l~~~~~~~g~~~~  461 (521)
                        +...+...+.+.+++++
T Consensus       232 ~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          232 RTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence              34445555555554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.16  E-value=4.9e-10  Score=114.99  Aligned_cols=163  Identities=13%  Similarity=0.110  Sum_probs=134.1

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLW  349 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~  349 (521)
                      +...++.|..+|.+.|++++|++.|++..+   .+..+|..+..+|.+.|++++|+..|++..+.  .| +...+..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            466788888889999999999999988764   34678888999999999999999999998874  35 4668888888


Q ss_pred             HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 009967          350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVEL  427 (521)
Q Consensus       350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~  427 (521)
                      ++...|++++|.+.|+++.+..+  -+...|..+..+|.+.|++++|++.|++. ...| +...+..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999998876554  45678889999999999999999999874 3345 46688889999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 009967          428 GEFAARRILALDP  440 (521)
Q Consensus       428 A~~~~~~~~~~~p  440 (521)
                      |.+.+++++++.|
T Consensus       164 A~~~~~kal~l~~  176 (723)
T 4gyw_A          164 YDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCh
Confidence            9999998887543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=4.3e-09  Score=92.48  Aligned_cols=183  Identities=10%  Similarity=-0.019  Sum_probs=124.5

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNI----VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG----VT  343 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~  343 (521)
                      +...+..+...+.+.|++++|...|+++.+  |+.    ..+..+..+|.+.|++++|...|+++.+..  |+.    ..
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            344556667778888888888888888764  332    467777888888888888888888887743  332    13


Q ss_pred             HHHHHHHHHh------------------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967          344 LLGLLWACNH------------------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF  405 (521)
Q Consensus       344 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  405 (521)
                      +..+..++..                  .|++++|...|+++....+-.+.  .+.+......-.+..            
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~l~~~~~~~------------  146 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKRLVFLKDRL------------  146 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHHHHHHHHHH------------
Confidence            4444444443                  45677777777777644442222  222111110000000            


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967          406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  475 (521)
                         ......+...+...|++++|+..|+++++..|+++   .++..++.+|.+.|++++|.+.++.+...+..
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence               00123456678899999999999999999999876   67999999999999999999999998877654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.15  E-value=2.1e-09  Score=85.46  Aligned_cols=127  Identities=19%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHh
Q 009967          344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQI  421 (521)
Q Consensus       344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~  421 (521)
                      +..+...+...|++++|..+++++....+  .+...+..+...+...|++++|...++++.  .+.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            34444555555566666666555543322  234455555666666666666666665532  13345566677777788


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .|++++|...++++....|+++.++..++.++...|++++|...++++.+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            888888888888888888888888888888888888888888888887654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.14  E-value=4.6e-09  Score=94.69  Aligned_cols=181  Identities=13%  Similarity=-0.014  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009967          259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-----NIVTWNAVICGYAQNGRGEEAIEFFERMR  333 (521)
Q Consensus       259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~  333 (521)
                      +...++...+.+ .++...+..+..++...|++++|++++.+..+.     +...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445555555444 334455567778888889999999998887542     34567778888999999999999999998


Q ss_pred             HCCCCC-----CHHHHHHHHHHH--Hhhc--cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967          334 INGIRP-----NGVTLLGLLWAC--NHTG--LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP  404 (521)
Q Consensus       334 ~~~~~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  404 (521)
                      +.  .|     +..+...+..++  ...|  +++.|..+|+++....   |+......+..++.+.|++++|.+.++.+.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            74  46     356666666663  3334  8899999999986333   442233344448889999999999987643


Q ss_pred             C-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          405 F-----------DP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       405 ~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                      .           .| ++.+...++......|+  +|.++++++.+..|++|.+..
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence            1           14 34456456555555676  889999999999998886643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.12  E-value=1.6e-08  Score=91.12  Aligned_cols=175  Identities=10%  Similarity=-0.043  Sum_probs=135.6

Q ss_pred             HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchH
Q 009967          294 SLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKL  369 (521)
Q Consensus       294 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  369 (521)
                      |...|++..+   ++..++..+..++...|++++|++++.+....+-.+ +...+..++..+.+.|+.+.|.+.+++|..
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            6788887764   455566788899999999999999999987655322 445777888899999999999999999964


Q ss_pred             hCCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 009967          370 EDPGML-----KPEHYACMVDL--LSRSG--RFKEAKEFLYDLPF-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL-  438 (521)
Q Consensus       370 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  438 (521)
                      ..   |     +..+...|+.+  ....|  ++.+|..+|+++.. .|+..+...++.++...|++++|.+.++.+.+. 
T Consensus       165 ~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 AI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             cC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            33   5     24455555555  33344  99999999999753 455444455555889999999999999988775 


Q ss_pred             ---------CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          439 ---------DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       439 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                               +|+++.++..++......|+  +|.++++++++..
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence                     58899999888877777887  8999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.09  E-value=3.8e-09  Score=96.01  Aligned_cols=164  Identities=12%  Similarity=0.065  Sum_probs=104.4

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE-------R----NIVTWNAVICGYAQNGRGEEAIEFFERMRIN------GI  337 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~  337 (521)
                      ..++..+..+|...|++++|...|.++.+       +    ...++..+...|...|++++|...++++.+.      +-
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  164 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD  164 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            44566677777777777777777776642       1    1346777788888888888888888887663      11


Q ss_pred             CCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhC------CCCC-ChhHHHHHHHHHHhcCC------HHHHHHHHhhC
Q 009967          338 RPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLED------PGML-KPEHYACMVDLLSRSGR------FKEAKEFLYDL  403 (521)
Q Consensus       338 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~  403 (521)
                      .|+ ..++..+..++...|++++|..+++++....      ...+ ....+..+...+...+.      +..+...++..
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC  244 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence            232 3467788888889999999999988876431      1112 22344444444443332      44444444444


Q ss_pred             CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          404 PF-DPG-IGFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       404 ~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      .. .|+ ..++..+...+...|++++|...++++++.
T Consensus       245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            31 222 337788888999999999999999998875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.09  E-value=2e-10  Score=93.86  Aligned_cols=141  Identities=10%  Similarity=-0.033  Sum_probs=95.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC
Q 009967          314 CGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR  392 (521)
Q Consensus       314 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  392 (521)
                      ..+...|++++|+..++.....  .|+.. .+..+...|...|++++|.+.|+++.+..+  -++..|..+..+|.+.|+
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCc
Confidence            3344556677777777765542  23322 445566667777777777777777765554  355667777777777777


Q ss_pred             HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          393 FKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFA-ARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       393 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      +++|+..|++. ...| +...|..+...+...|++++|.+. ++++++++|+++.+|......+.+.|+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            77777777763 2344 456777777778888887765554 588888888888888888888777765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.09  E-value=1.7e-07  Score=92.25  Aligned_cols=204  Identities=12%  Similarity=-0.012  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967          222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL  301 (521)
Q Consensus       222 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  301 (521)
                      +.+..+|++++... +.++..+...+.-+...|+.+.|..+++.+...  +.+...+...... .+.++.  ...+.+..
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~  269 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHT
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHH
Confidence            45677888877643 344566666777777888888888888888888  2233333221111 111111  11222221


Q ss_pred             C--C----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hccHHHHHHHHHHch
Q 009967          302 T--E----------RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH-TGLVEKGYSYFSQAK  368 (521)
Q Consensus       302 ~--~----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~  368 (521)
                      .  +          .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL  347 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            1  0          11235666677776778899999999988 321 1344444432222222 336889999999887


Q ss_pred             HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      +..+  .++..+...++...+.|+.+.|..+|+++.  .....|...+..-...|+.+.+..++++...
T Consensus       348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6654  234556667777788899999999999874  3567788888877888999888888888775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.08  E-value=7.3e-10  Score=114.19  Aligned_cols=169  Identities=8%  Similarity=-0.101  Sum_probs=132.7

Q ss_pred             HhcCCHHHHHHHHhhcC--------C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 009967          286 AKCGSMEDSLLVFDKLT--------E---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT  354 (521)
Q Consensus       286 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  354 (521)
                      ...|++++|.+.|++..        +   .+...+..+...+...|++++|...|+++.+.. +-+...+..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            67888999998888876        2   455678888888888999999999999888743 23556788888888889


Q ss_pred             ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009967          355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAA  432 (521)
Q Consensus       355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~  432 (521)
                      |++++|...|+++....+  .+...+..+..+|.+.|++++ ++.|++.. ..| +...|..+..++...|++++|++.|
T Consensus       481 g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999998876654  345678888888999999888 88887742 234 5668888888899999999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          433 RRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       433 ~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      +++++.+|++..++..++.++...|+
T Consensus       558 ~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999888888888888877554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=1.4e-08  Score=93.13  Aligned_cols=198  Identities=10%  Similarity=-0.016  Sum_probs=129.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-----ChhHHHHH
Q 009967          212 IGGYSQTGRNEEAVNLFIEMLRE----GLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-----DVFVGNSL  281 (521)
Q Consensus       212 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l  281 (521)
                      ...|...|++++|...|.+....    |-.++ ..+|..+..++...|+++.|...++.+.+.....     ...+++.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555666666666666655442    11111 2455566666666666666666666665432111     13467788


Q ss_pred             HHHHHhc-CCHHHHHHHHhhcCC--C---C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHH
Q 009967          282 ISFYAKC-GSMEDSLLVFDKLTE--R---N----IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG------VTLL  345 (521)
Q Consensus       282 ~~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~  345 (521)
                      ..+|... |++++|...|++..+  |   +    ..++..+...+...|++++|...|++..+.......      ..+.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            8889986 999999999998764  1   1    346888899999999999999999999885322211      1567


Q ss_pred             HHHHHHHhhccHHHHHHHHHHchHhCCCCCChh---HHHHHHHHHH--hcCCHHHHHHHHhhCCCCCCHH
Q 009967          346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE---HYACMVDLLS--RSGRFKEAKEFLYDLPFDPGIG  410 (521)
Q Consensus       346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~  410 (521)
                      .+..++...|++++|...|++.....+..++..   .+..++.++.  ..+++++|+..|+++. ..++.
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~-~l~~~  272 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM-RLDKW  272 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS-CCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC-ccHHH
Confidence            777888999999999999999874333222221   3445566664  4578999999998875 34443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.07  E-value=3.3e-10  Score=92.49  Aligned_cols=141  Identities=11%  Similarity=0.045  Sum_probs=111.2

Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCC
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSN  424 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~  424 (521)
                      |...+...|++++|...++......+  .++..+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            44556778999999999988752221  22345678999999999999999999984 3344 67799999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH-HHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcH
Q 009967          425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI-RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMND  503 (521)
Q Consensus       425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (521)
                      +++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.                          +|+..
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------------------------~P~~~  134 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------------------------FPGSP  134 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------------------------STTCH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------------------------CcCCH
Confidence            99999999999999999999999999999999999887765 5776542                          45556


Q ss_pred             HHHHHHHHHHHH
Q 009967          504 EIYAVLRSCTEQ  515 (521)
Q Consensus       504 ~i~~~l~~~~~~  515 (521)
                      .++...++++..
T Consensus       135 ~~~~l~~~ll~~  146 (150)
T 4ga2_A          135 AVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            777777766653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.06  E-value=9.8e-09  Score=81.48  Aligned_cols=131  Identities=19%  Similarity=0.274  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL  387 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (521)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++....+  .+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHH
Confidence            56677888888889999999988887753 34566777788888888999999999988875543  4566788888889


Q ss_pred             HhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          388 SRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       388 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      ...|++++|.+.++++. . +.+...+..++..+...|++++|...++++++.+|+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999888743 2 345678888888899999999999999999998874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.06  E-value=1.1e-08  Score=88.75  Aligned_cols=172  Identities=9%  Similarity=-0.060  Sum_probs=129.6

Q ss_pred             HHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc----cHHHHHHHHHHch
Q 009967          294 SLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG----LVEKGYSYFSQAK  368 (521)
Q Consensus       294 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~  368 (521)
                      |.+.|++..+ .++..+..+...|...+++++|...|++..+.|   +...+..+...|.. +    ++++|..+|++..
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            3444444433 456677777777777888888888888887765   55666667666766 6    7888888888875


Q ss_pred             HhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 009967          369 LEDPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLP-FDPG---IGFWKALLGGCQI----HSNVELGEFAARRIL  436 (521)
Q Consensus       369 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~  436 (521)
                       ..+   ++..+..|..+|..    .+++++|.+.|++.. ..|.   +..+..|...|..    .+++++|+..|+++.
T Consensus        81 -~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           81 -EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             -HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             -HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence             443   56677778888876    788888888888754 2332   6778888888877    789999999999998


Q ss_pred             hcCCCCchHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 009967          437 ALDPEDVSSYVMLSNALSVA-G-----KWDNVSNIRREMKEKGM  474 (521)
Q Consensus       437 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~  474 (521)
                      +. |.++..+..++.+|... |     ++++|...|++..+.|.
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            88 55778889999998764 3     89999999999887764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.05  E-value=8.4e-09  Score=94.30  Aligned_cols=176  Identities=13%  Similarity=-0.045  Sum_probs=138.8

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHh
Q 009967          291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE  370 (521)
Q Consensus       291 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  370 (521)
                      .+...+.+......+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++...
T Consensus       102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            3444555555554555677778888999999999999999988753 235668888888999999999999999998644


Q ss_pred             CCCCCChhHH-HHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chH
Q 009967          371 DPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED--VSS  445 (521)
Q Consensus       371 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~  445 (521)
                      .   |+.... ......+.+.++.++|...+++.. . +.+...+..+...+...|++++|+..|+++++.+|++  ..+
T Consensus       181 ~---p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          181 D---QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             G---CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             h---cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence            3   444332 233334667788888888887642 2 4467789999999999999999999999999999987  889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          446 YVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       446 ~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +..++.++...|+.++|...+++..
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            9999999999999999999988754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.05  E-value=1.2e-08  Score=88.31  Aligned_cols=134  Identities=10%  Similarity=-0.009  Sum_probs=101.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967          312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG  391 (521)
Q Consensus       312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  391 (521)
                      +..+|.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++....+  .++..+..+..+|...|
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--DNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHh
Confidence            8888999999999999999998853 23567888899999999999999999999986665  45677888888887665


Q ss_pred             C--HHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          392 R--FKEAKEFLYDLPFDPGIG--FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       392 ~--~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                      +  .+.+...++... .|+..  .+.....++...|++++|+..|++++++.|+ ......+.
T Consensus       137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~  197 (208)
T 3urz_A          137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            4  455666776655 45543  4444566677789999999999999999994 33333333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.00  E-value=8.7e-09  Score=104.25  Aligned_cols=160  Identities=13%  Similarity=0.028  Sum_probs=123.9

Q ss_pred             cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967          288 CGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF  364 (521)
Q Consensus       288 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  364 (521)
                      .|++++|.+.|++..+   .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4788999999999875   346789999999999999999999999998853 335678888999999999999999999


Q ss_pred             HHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 009967          365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH---SNVELGEFAARRILALD  439 (521)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~  439 (521)
                      +++.+..+  .+...+..+..+|.+.|++++|.+.+++.. . +.+...+..+...+...   |++++|.+.++++++.+
T Consensus        81 ~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            99986654  457789999999999999999999998842 2 34567888899999999   99999999999999999


Q ss_pred             CCCchHHHHHH
Q 009967          440 PEDVSSYVMLS  450 (521)
Q Consensus       440 p~~~~~~~~l~  450 (521)
                      |++...+..++
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            99888887776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=7.6e-09  Score=86.97  Aligned_cols=157  Identities=13%  Similarity=0.037  Sum_probs=92.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH-HHh
Q 009967          311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL-LSR  389 (521)
Q Consensus       311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  389 (521)
                      .+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++....+   ++..+..+... +..
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHHHHHh
Confidence            33444445555555555555444321 11233444455555555555555555555442222   22222111111 111


Q ss_pred             cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHhcCChHHHHHH
Q 009967          390 SGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPED--VSSYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       390 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      .+...+|...+++. ...| +...+..+...+...|++++|+..|+++++.+|+.  +..+..++.++...|+.++|...
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            11222344444442 1244 46788888888899999999999999999998864  56899999999999999999999


Q ss_pred             HHHHHh
Q 009967          466 RREMKE  471 (521)
Q Consensus       466 ~~~m~~  471 (521)
                      |++...
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.95  E-value=1.9e-08  Score=87.11  Aligned_cols=156  Identities=9%  Similarity=0.081  Sum_probs=112.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967          312 VICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLG----------------LLWACNHTGLVEKGYSYFSQAKLEDPGM  374 (521)
Q Consensus       312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~  374 (521)
                      ....+...|++++|...|++..+.  .|+. ..+..                +..++...|++++|...|+++.+..+  
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--   85 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP--   85 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--
Confidence            334455566666666666666553  2332 23444                78889999999999999999986665  


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHS--NVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                      .++..+..+..+|...|++++|...|++.. ..| +..+|..+...+...|  +.+.+...++++....| ....+...+
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g  164 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG  164 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence            467789999999999999999999999853 344 5678888888876654  34556677777654333 334566778


Q ss_pred             HHHHhcCChHHHHHHHHHHHhC
Q 009967          451 NALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       451 ~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .++...|++++|+..|++..+.
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            8889999999999999998754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.95  E-value=2e-09  Score=87.47  Aligned_cols=97  Identities=13%  Similarity=0.053  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-FD-PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      ...+..+...+.+.|++++|...|++.. .. .+...|..+..++...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            4467788889999999999999998853 34 467789999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhCC
Q 009967          455 VAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       455 ~~g~~~~A~~~~~~m~~~g  473 (521)
                      ..|++++|+..|++..+..
T Consensus       116 ~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999988754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=7.1e-08  Score=88.08  Aligned_cols=172  Identities=10%  Similarity=0.030  Sum_probs=122.1

Q ss_pred             HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 009967          194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL  273 (521)
Q Consensus       194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  273 (521)
                      .+.+......+...+..+...+...|++++|...|++.....  |+                                  
T Consensus       106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~----------------------------------  149 (287)
T 3qou_A          106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQ----------------------------------  149 (287)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TS----------------------------------
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--Cc----------------------------------
Confidence            333333333344556666666677777777777777766632  44                                  


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNA-VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      +...+..+..++.+.|++++|...++++.+  |+...... ....+...++.++|...+++..... +.+...+..+...
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~  228 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQ  228 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHH
Confidence            667788888999999999999999999875  54432222 2233566778888888888887753 3456678888888


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD  402 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  402 (521)
                      +...|++++|...|+++....+-..+...+..++.+|...|+.++|...+++
T Consensus       229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            8899999999999998886665444466788888888888888888777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.94  E-value=1.5e-08  Score=79.65  Aligned_cols=108  Identities=13%  Similarity=-0.001  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ  420 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~  420 (521)
                      .+......+.+.|++++|...|+++.+..+  .++..|..+..+|.+.|++++|+..+++.. . +.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            555666677777777777777777765554  355667777777777777777777777632 2 334567777777777


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      ..|++++|++.|+++++++|+++.++..+..+
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            78888888888888888888777777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.93  E-value=5.3e-08  Score=100.36  Aligned_cols=169  Identities=10%  Similarity=-0.077  Sum_probs=132.7

Q ss_pred             HhhcchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 009967          251 ANIAALGMGKSFHACAV--------KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQN  319 (521)
Q Consensus       251 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~  319 (521)
                      ...|++++|...++.+.        +... .+...+..+..++.+.|++++|.+.|+++.+   .+...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            67788888888888887        3332 2667788888999999999999999998875   4667888899999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967          320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF  399 (521)
Q Consensus       320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  399 (521)
                      |++++|...|++..+.. +-+...+..+..++...|++++ ...|+++.+..+  .+...|..+..+|.+.|++++|.+.
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND--GVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999988753 2245678888888999999999 999999876654  4566888999999999999999999


Q ss_pred             HhhCC-CCCC-HHHHHHHHHHHHhcCC
Q 009967          400 LYDLP-FDPG-IGFWKALLGGCQIHSN  424 (521)
Q Consensus       400 ~~~~~-~~~~-~~~~~~l~~~~~~~g~  424 (521)
                      |++.. ..|+ ...+..+..++...++
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99854 5666 4477777777666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=2.5e-08  Score=100.79  Aligned_cols=146  Identities=13%  Similarity=-0.029  Sum_probs=81.4

Q ss_pred             hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967          253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFF  329 (521)
Q Consensus       253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~  329 (521)
                      .|++++|...++++.+..+. +...+..+...+.+.|++++|.+.|++..+   .+...|..+...|...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            35666666666666655433 456666666677777777777777766654   23456666666777777777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc---CCHHHHHHHHhh
Q 009967          330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS---GRFKEAKEFLYD  402 (521)
Q Consensus       330 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~  402 (521)
                      ++..+.. +.+...+..+..++...|++++|.+.++++.+..+  .+...+..+..++...   |++++|.+.+++
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~  153 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRA  153 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            7766542 22345666666667777777777777776654443  3445666666667666   777777766665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.90  E-value=6e-09  Score=84.67  Aligned_cols=97  Identities=13%  Similarity=0.045  Sum_probs=79.8

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      +...+..+...+.+.|++++|...|++.. . +.+...|..+..++...|++++|+..|+++++++|+++.++..++.+|
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34466677788888888888888888742 2 446778888888888899999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 009967          454 SVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       454 ~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...|++++|...|++..+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999887654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.90  E-value=1.6e-07  Score=92.47  Aligned_cols=354  Identities=9%  Similarity=-0.056  Sum_probs=197.9

Q ss_pred             hcC-ChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC-HHHH
Q 009967           85 KQH-HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS-IEEA  162 (521)
Q Consensus        85 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a  162 (521)
                      +.| +++.|..+|+.+.+.  -|.              |+++.+..+|+..+..  .|+...|...+....+.++ .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            456 488888899888763  244              8999999999998873  5799999988887777663 3455


Q ss_pred             HHHhhcCCC------CCchhHHHHHHHHH----cCCCHHHHHHHHhhCCC-C--Ch-hHHHHHHHHHHhc----------
Q 009967          163 TRVFEDTHN------PNVVSYTTMICGLL----KRERFEDALKLFQEMPH-R--NV-VSWNAMIGGYSQT----------  218 (521)
Q Consensus       163 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~-~--~~-~~~~~l~~~~~~~----------  218 (521)
                      ..+|+....      .+...|...+.-+.    ..|+++.+.++|++... |  +. ..|......-...          
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~  147 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG  147 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence            566665432      34456666665543    23567888888888755 2  11 2233222211111          


Q ss_pred             ---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh--c-----chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 009967          219 ---GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI--A-----ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC  288 (521)
Q Consensus       219 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  288 (521)
                         +.+..|..+++.+...--..+...+...+.--...  +     ..+.+..+++.++...+. +..+|...+..+.+.
T Consensus       148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~  226 (493)
T 2uy1_A          148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGI  226 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence               12223344444443210001222333322222111  0     123456677777775543 466777777777788


Q ss_pred             CCHHHHHHHHhhcCC-CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---HHHHHHHHHHHHhh
Q 009967          289 GSMEDSLLVFDKLTE-RNIV-TWNAVICGYAQNGRGEEAIEFFERMRING---------IRPN---GVTLLGLLWACNHT  354 (521)
Q Consensus       289 g~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~---------~~p~---~~~~~~ll~~~~~~  354 (521)
                      |+.+.|..+|++... |+.. .|.    .|....+.++.   ++.+.+.-         ..+.   ...|...+....+.
T Consensus       227 ~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~  299 (493)
T 2uy1_A          227 GQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK  299 (493)
T ss_dssp             TCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence            888888888876653 3222 121    22222122222   22222110         0011   12455555555567


Q ss_pred             ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009967          355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG-RFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFA  431 (521)
Q Consensus       355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~  431 (521)
                      ++.+.|..+|+++ ...+  .+..+|...+..-.+.+ +.+.|..+|+...  .+.++..|...+......|+.+.|..+
T Consensus       300 ~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l  376 (493)
T 2uy1_A          300 RGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL  376 (493)
T ss_dssp             HCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7788888888877 2222  23444543333333333 5888888887632  122344566666666777888888888


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       432 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      |+++    +.+...|..++..-...|+.+.+..+++++.+
T Consensus       377 ~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          377 FKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8887    33667777888777778888888887777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.89  E-value=2.8e-08  Score=78.08  Aligned_cols=95  Identities=7%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      ..+......|.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..|+++++++|+++.+|..++.++..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            46778899999999999999999984 33 44677999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhC
Q 009967          456 AGKWDNVSNIRREMKEK  472 (521)
Q Consensus       456 ~g~~~~A~~~~~~m~~~  472 (521)
                      .|++++|++.|++..+.
T Consensus        94 ~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           94 MREWSKAQRAYEDALQV  110 (126)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=2.4e-07  Score=84.91  Aligned_cols=161  Identities=6%  Similarity=-0.056  Sum_probs=121.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHH
Q 009967          311 AVICGYAQNGRGEEAIEFFERMRING-IRPNGV----TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYA  381 (521)
Q Consensus       311 ~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~  381 (521)
                      ..+..+...|++++|..++++..+.. ..|+..    .+..+...+...+++++|...++++.......++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34677888999999999999987742 122221    2334666677788999999999998753332233    23688


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHH
Q 009967          382 CMVDLLSRSGRFKEAKEFLYDLP-----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPED------VSSY  446 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~  446 (521)
                      .+..+|...|++++|...+++..     .+.+    ..++..+...|...|++++|+..++++++..+..      ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            99999999999999999888742     1112    2277888889999999999999999999864332      6789


Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 009967          447 VMLSNALSVAGK-WDNVSNIRREMKE  471 (521)
Q Consensus       447 ~~l~~~~~~~g~-~~~A~~~~~~m~~  471 (521)
                      ..++.+|.+.|+ +++|...+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999999999995 6999999988754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=2.1e-06  Score=78.15  Aligned_cols=225  Identities=10%  Similarity=0.027  Sum_probs=141.4

Q ss_pred             hHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhc--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---CC
Q 009967          221 NEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIA--ALGMGKSFHACAVKFLGKLDVFVGNSLISFY----AKC---GS  290 (521)
Q Consensus       221 ~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~  290 (521)
                      .++|++.++.++..  .|+..| ++.--.++...+  +++++...++.+....++ +..+++.-..++    ...   ++
T Consensus        49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence            35677777666663  354433 333334444445  666666666666665544 444444443333    344   67


Q ss_pred             HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc------HHH
Q 009967          291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGE--EAIEFFERMRINGIRPNGVTLLGLLWACNHTGL------VEK  359 (521)
Q Consensus       291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~  359 (521)
                      ++++..+++.+.+   .|..+|+.-.-.+.+.|.++  ++++.++++.+.. .-|...|+.-...+...+.      +++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            7788888877764   45667777777777777777  8888888887754 2355666665555555555      777


Q ss_pred             HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967          360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE-AKEFLYDLPF-----DPGIGFWKALLGGCQIHSNVELGEFAAR  433 (521)
Q Consensus       360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~  433 (521)
                      +.+.++++....+  -|...|+.+...+.+.|+... +..+..++..     ......+..++..+...|+.++|+++++
T Consensus       205 El~~~~~aI~~~p--~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          205 ELNYVKDKIVKCP--QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            8888777765554  466677777777777776443 4445555321     2355677777777777777778888888


Q ss_pred             HHHh-cCCCCchHHHHHHH
Q 009967          434 RILA-LDPEDVSSYVMLSN  451 (521)
Q Consensus       434 ~~~~-~~p~~~~~~~~l~~  451 (521)
                      .+.+ .+|.....|...+.
T Consensus       283 ~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          283 LLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHTTCGGGHHHHHHHHH
T ss_pred             HHHhccChHHHHHHHHHHh
Confidence            7776 67766666665543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=6.2e-08  Score=89.49  Aligned_cols=220  Identities=14%  Similarity=0.020  Sum_probs=153.3

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 009967          217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL  296 (521)
Q Consensus       217 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  296 (521)
                      ..|++++|.+++++..+..  +..  +      +...++++.|...+..               ....|...|++++|..
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKD   57 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHH
Confidence            3567888888888776532  110  0      0013566666655554               3567778899999888


Q ss_pred             HHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhhccHHHHH
Q 009967          297 VFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRPN--GVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       297 ~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~~~~~a~  361 (521)
                      .|.+..+     .+    ..+|+.+...|...|++++|...|++..+.    | .|.  ..++..+..+|.. |++++|.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            8887753     12    347888889999999999999999987652    2 122  3467788888888 9999999


Q ss_pred             HHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHH
Q 009967          362 SYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP-F---DPG----IGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      ..|++.....+...+    ..++..+..+|.+.|++++|+..+++.. .   .++    ...+..++..+...|++++|+
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999988643321111    3578889999999999999999998742 1   122    225666667778889999999


Q ss_pred             HHHHHHHhcCCCCch-----HHHHHHHHHHhcCChHHHHHH
Q 009967          430 FAARRILALDPEDVS-----SYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       430 ~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      ..|++++ ..|....     ....++.++ ..|+.+.+..+
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999999 8886433     344555555 56777666553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.87  E-value=6.9e-08  Score=84.71  Aligned_cols=184  Identities=9%  Similarity=-0.051  Sum_probs=132.0

Q ss_pred             ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh----HHH
Q 009967          239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV----TWN  310 (521)
Q Consensus       239 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~  310 (521)
                      +...+......+...|+++.|...++.+.+..+...  ...+..+..+|.+.|++++|...|+++.+  |+..    .+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            344566677788999999999999999998765422  35778889999999999999999999874  4322    455


Q ss_pred             HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhC
Q 009967          311 AVICGYAQ------------------NGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLED  371 (521)
Q Consensus       311 ~li~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  371 (521)
                      .+..++..                  .|++++|...|+++.+.  .|+.. .......    .+.      +...+    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~~------~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LVF------LKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HHH------HHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HHH------HHHHH----
Confidence            55555554                  57899999999999875  35543 2211111    000      11111    


Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGI----GFWKALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       372 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                           ......+...|.+.|++++|...++++. ..|+.    ..+..+..++...|++++|++.++++....|++.
T Consensus       147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence                 0112356788889999999999998853 23432    4678888899999999999999999999888754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.87  E-value=1e-07  Score=82.66  Aligned_cols=129  Identities=9%  Similarity=-0.063  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL  387 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (521)
                      .+..+...+...|++++|...|++.    +.|+...+..+..++...|++++|...++++....+  .+...+..+..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHH
Confidence            4556677778888888888888866    356777888888888888888888888888875543  4566788888888


Q ss_pred             HhcCCHHHHHHHHhhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967          388 SRSGRFKEAKEFLYDLP-FDP-G----------------IGFWKALLGGCQIHSNVELGEFAARRILALDPED  442 (521)
Q Consensus       388 ~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  442 (521)
                      ...|++++|.+.+++.. ..| +                ...+..+..++...|++++|...|+++++..|++
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            88888888888887632 111 1                2567777778888888888888888888888865

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.87  E-value=2.1e-08  Score=80.84  Aligned_cols=120  Identities=10%  Similarity=-0.001  Sum_probs=96.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      ...+..+...+.+.|++++|...|++.. . +.+...|..+..++...|++++|+..|+++++.+|+++.++..++.+|.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            3456677788888999999999988742 2 4467788888889999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 009967          455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF  519 (521)
Q Consensus       455 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~  519 (521)
                      ..|++++|...|++..+...                       .+|....+......+++.+++.
T Consensus        98 ~~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALAA-----------------------AQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHHH-----------------------TCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCC-----------------------CCcchHHHHHHHHHHHHHHHhc
Confidence            99999999999999876431                       3455666777777777666543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.84  E-value=8.9e-08  Score=79.17  Aligned_cols=127  Identities=9%  Similarity=-0.014  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ  420 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~  420 (521)
                      .+..+...+...|++++|...|+++....+  .+..++..+..++...|++++|...+++.. . +.+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            455566667777888888888887765443  356677778888888888888888887642 2 345668888888999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 009967          421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA--LSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~  471 (521)
                      ..|++++|...++++++..|.++..+..+..+  +...|++++|+..+++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999999999988888555555  8888999999999987643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.84  E-value=1.2e-07  Score=82.13  Aligned_cols=171  Identities=9%  Similarity=-0.124  Sum_probs=124.6

Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHH
Q 009967          260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNG----RGEEAIEFFERMRI  334 (521)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~A~~~~~~m~~  334 (521)
                      ...+....+.|   ++..+..+...|...+++++|...|++..+ .++..+..+...|.. +    ++++|..+|++..+
T Consensus         6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~   81 (212)
T 3rjv_A            6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE   81 (212)
T ss_dssp             THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence            33444444443   566677777777778888888888887765 455677777777776 5    78888888888877


Q ss_pred             CCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHchHhCCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHhhC
Q 009967          335 NGIRPNGVTLLGLLWACNH----TGLVEKGYSYFSQAKLEDPGMLK---PEHYACMVDLLSR----SGRFKEAKEFLYDL  403 (521)
Q Consensus       335 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~  403 (521)
                      .|   +...+..+...|..    .+++++|..+|++.. ..+  ++   +..+..|..+|..    .+++++|...|++.
T Consensus        82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            65   56677777777766    778899999998875 443  32   6778888888887    77899999988875


Q ss_pred             C-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 009967          404 P-FDPGIGFWKALLGGCQIH-S-----NVELGEFAARRILALDP  440 (521)
Q Consensus       404 ~-~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p  440 (521)
                      . ..++...+..|...|... |     +.++|+..|+++.+.+.
T Consensus       156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            3 235556777777777543 3     89999999999988764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.84  E-value=1.1e-08  Score=93.21  Aligned_cols=190  Identities=8%  Similarity=-0.054  Sum_probs=126.3

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      +...+..+...+.+.|++++|...|++..+   .+...|..+..+|...|++++|...+++..+.. +.+...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            345566677777888888888888887753   356677888888888888888888888877643 2345677778888


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGML---KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL  427 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  427 (521)
                      +...|++++|...|+++....+-.+   ....+..+  ...+...+..    .......++......+.. + ..|+.++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~  153 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER  153 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence            8888888888888887764332111   11112111  1222222222    122222334433333322 2 3689999


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 009967          428 GEFAARRILALDPEDVSSYVMLSNALSVA-GKWDNVSNIRREMKEK  472 (521)
Q Consensus       428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~  472 (521)
                      |++.++++++.+|++......+...+.+. +++++|.++|.+..+.
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99999999999998887777787777766 7789999999987653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=8.4e-08  Score=80.48  Aligned_cols=156  Identities=15%  Similarity=0.022  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CNH  353 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~  353 (521)
                      ...+...+.+.|++++|...|++..+   .+...+..+...+...|++++|...+++.....  |+.......... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            34455666677777777777777664   345566777777777777777777777665432  333322221111 112


Q ss_pred             hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 009967          354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG---IGFWKALLGGCQIHSNVELGE  429 (521)
Q Consensus       354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~  429 (521)
                      .+....|...++++....+  .++..+..+..++...|++++|...++++ ...|+   ...+..+...+...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2222345666776664443  34566777777777777777777777763 33443   446777777777778887787


Q ss_pred             HHHHHHHh
Q 009967          430 FAARRILA  437 (521)
Q Consensus       430 ~~~~~~~~  437 (521)
                      ..|++.+.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.82  E-value=9.9e-07  Score=80.31  Aligned_cols=212  Identities=13%  Similarity=0.079  Sum_probs=169.3

Q ss_pred             hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----HHc---CChH
Q 009967          256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG--SMEDSLLVFDKLTE---RNIVTWNAVICGY----AQN---GRGE  323 (521)
Q Consensus       256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~~~~  323 (521)
                      .++|....+.++..++. +..+++.-..++...|  +++++++.++.+..   .+..+|+.-...+    ...   ++++
T Consensus        49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            36889999999988776 6777888888888888  99999999999875   4456777665555    555   7899


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH--HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC------HHH
Q 009967          324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE--KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR------FKE  395 (521)
Q Consensus       324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~  395 (521)
                      +++.+++.+.+.. +-+..+|..-...+...|.++  ++.++++++.+..+  -+...|+.-..++.+.|+      +++
T Consensus       128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~--~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL--KNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccchhhhHHH
Confidence            9999999999854 346678877777777788887  99999999986665  566677766666777776      888


Q ss_pred             HHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC---CCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          396 AKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE-LGEFAARRILALD---PEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       396 A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      +++.+++.. . +-|...|+.+...+...|+.. .+..+++++.+.+   |.++.++..++.+|.+.|+.++|.++++.+
T Consensus       205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            988887742 2 456779999888888887744 4667888887776   789999999999999999999999999998


Q ss_pred             Hh
Q 009967          470 KE  471 (521)
Q Consensus       470 ~~  471 (521)
                      .+
T Consensus       285 ~~  286 (306)
T 3dra_A          285 KS  286 (306)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.81  E-value=1.4e-07  Score=86.41  Aligned_cols=164  Identities=5%  Similarity=-0.101  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hh
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-G----VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PE  378 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~  378 (521)
                      .+...+..+...|++++|.+.+++..+...... .    ..+..+...+...|++++|...++++........+    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            445567778889999999999988777432211 1    12334555667888999999999887633221122    34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP----FDPG-----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DV  443 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~  443 (521)
                      +++.+...|...|++++|...+++..    ..|+     ..++..+...|...|++++|+..++++++..++      -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            78889999999999999999987742    1222     247888888999999999999999999886432      26


Q ss_pred             hHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 009967          444 SSYVMLSNALSVAGKWDNV-SNIRREMKE  471 (521)
Q Consensus       444 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~  471 (521)
                      .+|..++.+|.+.|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            7889999999999999999 777887653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.77  E-value=2.3e-07  Score=72.28  Aligned_cols=115  Identities=19%  Similarity=0.209  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 009967          341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGG  418 (521)
Q Consensus       341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~  418 (521)
                      ...+..+...+...|++++|...++++....+  .+...+..+..++.+.|++++|...++++.  .+.+...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            34566666677777777777777777764443  345567777777778888888887777642  13456677888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967          419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG  457 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  457 (521)
                      +...|++++|...++++.+..|+++..+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888999999999999999999988888888888876654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.77  E-value=1.4e-07  Score=74.16  Aligned_cols=117  Identities=11%  Similarity=-0.042  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHH
Q 009967          341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGG  418 (521)
Q Consensus       341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~  418 (521)
                      ...+..+...+...|+++.|...++++....+  .+...+..+..++...|++++|.+.+++.. . +.+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            34566666777777888888888887765443  356677778888888888888888887642 2 3446678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 009967          419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW  459 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  459 (521)
                      +...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999888875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.76  E-value=1.3e-07  Score=79.32  Aligned_cols=118  Identities=10%  Similarity=0.134  Sum_probs=74.0

Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHH-HHhcCCH--HH
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGG-CQIHSNV--EL  427 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~-~~~~g~~--~~  427 (521)
                      ..|++++|...+++.....+  .+...+..+..+|...|++++|...+++.. . +.+...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34556666666666554443  344556666666666666666666666532 1 2345566666666 5566776  77


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      |+..++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            777777777777777777777777777777777777777776654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.76  E-value=4.4e-07  Score=78.60  Aligned_cols=131  Identities=14%  Similarity=0.023  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL  356 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  356 (521)
                      .+..+...+...|++++|...|++..+++...|..+...+...|++++|...+++..... +.+...+..+..++...|+
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            355667777888888888888888887788888888888888888888888888877753 3456677788888888888


Q ss_pred             HHHHHHHHHHchHhCCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 009967          357 VEKGYSYFSQAKLEDPGML--------------KPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG  408 (521)
Q Consensus       357 ~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~  408 (521)
                      +++|...|+++....+..+              ....+..+..+|.+.|++++|.+.+++. ...|+
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            8888888888875443222              1256778888888888888888888773 33454

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.74  E-value=1.6e-07  Score=87.90  Aligned_cols=128  Identities=9%  Similarity=-0.087  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CC
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-------------KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DP  407 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~  407 (521)
                      .+..+...+...|++++|...|+++....+..+             ....|..+..+|.+.|++++|+..+++.. . +.
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  228 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN  228 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            455555556666666666666666553333111             14678888999999999999999988742 2 44


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 009967          408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV-SNIRREMK  470 (521)
Q Consensus       408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~  470 (521)
                      +...|..+..++...|++++|+..|+++++++|+++.++..++.++.+.|++++| ...++.|.
T Consensus       229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999999999999999999998 55666664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.73  E-value=1.5e-07  Score=74.41  Aligned_cols=115  Identities=10%  Similarity=0.010  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHH
Q 009967          342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGC  419 (521)
Q Consensus       342 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~  419 (521)
                      ..+..+...+...|++++|...++++....+  .+...+..+..+|...|++++|.+.+++.. . +.+...+..+...+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3555555566666666666666666543222  244556666666666666666666666532 1 33456777777778


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      ...|++++|+..|+++++.+|.+...+..++.++...|+
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888888776653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.71  E-value=7.4e-08  Score=88.99  Aligned_cols=197  Identities=8%  Similarity=-0.030  Sum_probs=148.4

Q ss_pred             hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967          252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER  331 (521)
Q Consensus       252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~  331 (521)
                      ..|++++|..++++..+.... .         .+...++++.|...|..+           ...|...|++++|...|.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence            367888999999888765322 1         011157888888887653           6678889999999999998


Q ss_pred             HHHC----CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967          332 MRIN----GIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG--MLK--PEHYACMVDLLSRSGRFKEAKEFLYD  402 (521)
Q Consensus       332 m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~  402 (521)
                      ..+.    +-.+. ..+|..+..+|...|++++|...|++......-  .+.  ..++..+..+|.. |++++|+..+++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            7652    21111 347888888899999999999999987643211  121  3467888999988 999999999987


Q ss_pred             CC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          403 LP-F---DPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDV------SSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       403 ~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      .. .   ..+    ..++..+...+...|++++|+..|++++++.|.+.      ..+..++.++...|++++|...+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            42 1   111    34788888999999999999999999999765432      3677788888999999999999999


Q ss_pred             HH
Q 009967          469 MK  470 (521)
Q Consensus       469 m~  470 (521)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            77

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.65  E-value=3e-07  Score=72.14  Aligned_cols=118  Identities=10%  Similarity=0.025  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      ..+..+...+.+.|++++|...|++.. . +.+...|..+..++...|++++|+..++++++.+|+++.+|..++.++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            456666777777888888888777632 2 34566788888888888889999999999999889888889999999999


Q ss_pred             cCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 009967          456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ  515 (521)
Q Consensus       456 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  515 (521)
                      .|++++|...+++..+....                    ....|....+...+..+...
T Consensus        85 ~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence            99999999988887654311                    02336666777666665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.65  E-value=7.5e-07  Score=79.22  Aligned_cols=181  Identities=9%  Similarity=-0.076  Sum_probs=105.1

Q ss_pred             hcCCHHHHHHHHhhcCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 009967          287 KCGSMEDSLLVFDKLTE--R-NIVTWNAV-------ICGYAQNGRGEEAIEFFERMRINGIRPNG---------------  341 (521)
Q Consensus       287 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~---------------  341 (521)
                      ..++...|.+.|.++.+  | ....|..+       ...+...++..+++..+.+-..  +.|+.               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            45667777777776654  2 23455555       3444444444455444444332  11211               


Q ss_pred             -------HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH----H
Q 009967          342 -------VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI----G  410 (521)
Q Consensus       342 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~  410 (521)
                             .....+...+...|++++|.+.|+.+. ..+  |+......+...+.+.|++++|+..|+.....|+.    .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~-~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP-VAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC-CTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                   122334455667777777777777664 222  33324455555677777777777777654323322    2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALD--PE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .+..+..++...|++++|+..|+++....  |. .+......+.++.+.|+.++|..+|+++...
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            45556666777777777777777776432  43 4456677777777777777777777777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.64  E-value=2.5e-07  Score=70.52  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=83.6

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSN  451 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~  451 (521)
                      +...+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|+..++++++..|.  ++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34456777888888888888888887742 2 345678888888899999999999999999999998  8999999999


Q ss_pred             HHHhc-CChHHHHHHHHHHHhCCCc
Q 009967          452 ALSVA-GKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       452 ~~~~~-g~~~~A~~~~~~m~~~g~~  475 (521)
                      ++... |++++|.+.+++..+....
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccC
Confidence            99999 9999999999998876543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.64  E-value=2.6e-07  Score=82.22  Aligned_cols=136  Identities=13%  Similarity=-0.040  Sum_probs=94.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC--hhHHHHHHHHH
Q 009967          310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK--PEHYACMVDLL  387 (521)
Q Consensus       310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~  387 (521)
                      -.+...+...|++++|.++|..+...+  |+......+...+.+.+++++|+..|+... ..+ .|.  ...+..+..++
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHH
Confidence            345566777788888888887766543  554444445556778888888888887653 222 111  23567778888


Q ss_pred             HhcCCHHHHHHHHhhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          388 SRSGRFKEAKEFLYDLPFD---PG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       388 ~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                      .+.|++++|+..|++....   |.  ...+.....++...|+.++|...|+++...+|+ +..+..|.
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            8888888888888875322   43  235666777788889999999999999999996 66555553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.62  E-value=4e-07  Score=73.77  Aligned_cols=99  Identities=6%  Similarity=-0.018  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQ  420 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~  420 (521)
                      .+..+...+...|++++|...|+++....+  .++..|..+..+|.+.|++++|+..|++.. ..| ++..|..+..++.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            566666677778888888888887775554  456677778888888888888888887642 233 4567778888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCc
Q 009967          421 IHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      ..|++++|+..|++++++.|+++
T Consensus       116 ~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCHH
Confidence            88888888888888888888543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.62  E-value=2.1e-07  Score=75.47  Aligned_cols=115  Identities=10%  Similarity=-0.030  Sum_probs=87.6

Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-
Q 009967          329 FERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-  405 (521)
Q Consensus       329 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-  405 (521)
                      ++++..  +.|+ ...+..+...+...|++++|...|+++....+  .++..|..+..+|...|++++|...+++.. . 
T Consensus        10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            444443  3343 34566677778888999999998888875554  466778888888889999999998888742 2 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                      +.+...+..+..++...|++++|+..|+++++..|+++....
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            345667888888999999999999999999999998776533

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=1.1e-06  Score=67.39  Aligned_cols=108  Identities=13%  Similarity=0.024  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ  420 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~  420 (521)
                      .+..+...+...|++++|...++++....+  .++..+..+..++...|++++|...+++.. . +.+...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            444455555556666666666665543332  234455555555666666666665555421 1 223455666666666


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      ..|++++|...++++.+.+|+++..+..++.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            66677777777777777666666666555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.61  E-value=1.6e-06  Score=79.40  Aligned_cols=162  Identities=9%  Similarity=-0.117  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 009967          277 VGNSLISFYAKCGSMEDSLLVFDKLTE--R-NI------VTWNAVICGYAQNGRGEEAIEFFERMRINGI---RPN--GV  342 (521)
Q Consensus       277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~  342 (521)
                      .+...+..+...|++++|.+.+....+  + ..      ..+..+...+...|++++|...+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344566777888999999888876542  1 11      2244455667778899999999998875321   122  34


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHch---HhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C------CCC-H
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAK---LEDPGMLK--PEHYACMVDLLSRSGRFKEAKEFLYDLP-F------DPG-I  409 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~~~-~  409 (521)
                      +++.+...|...|++++|..+++++.   ...+..+.  ..++..+..+|.+.|++++|...+++.. .      ... .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            78888888999999999999999886   33332221  2478889999999999999999988632 1      111 5


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 009967          410 GFWKALLGGCQIHSNVELG-EFAARRILAL  438 (521)
Q Consensus       410 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~  438 (521)
                      .++..+...+...|++++| ...+++++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            5788888889999999999 7878888763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.61  E-value=5.4e-07  Score=77.10  Aligned_cols=96  Identities=8%  Similarity=0.008  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      .++..+..+|.+.|++++|...+++.. . +.+...+..+..++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            567778888888888888888887742 2 44567888899999999999999999999999999999999999999999


Q ss_pred             cCChHHHH-HHHHHHHhCC
Q 009967          456 AGKWDNVS-NIRREMKEKG  473 (521)
Q Consensus       456 ~g~~~~A~-~~~~~m~~~g  473 (521)
                      .++.+++. ..++.|...|
T Consensus       169 ~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            98888877 5666665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.60  E-value=2.6e-07  Score=71.96  Aligned_cols=94  Identities=14%  Similarity=0.023  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      .+..+...+.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..++.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35567788889999999999998853 344 6778888999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 009967          457 GKWDNVSNIRREMKEK  472 (521)
Q Consensus       457 g~~~~A~~~~~~m~~~  472 (521)
                      |++++|+..+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.59  E-value=7.5e-07  Score=70.88  Aligned_cols=99  Identities=12%  Similarity=-0.008  Sum_probs=80.4

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      .+...+..+...+...|++++|...+++.. . +.+...|..+...+...|++++|+..++++++.+|+++.++..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            355667777788888888888888877632 2 33466788888888889999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCC
Q 009967          453 LSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       453 ~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      +...|++++|...+++..+..
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHC
Confidence            999999999999999887643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.58  E-value=7.8e-07  Score=69.70  Aligned_cols=111  Identities=7%  Similarity=-0.160  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHH
Q 009967          342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGC  419 (521)
Q Consensus       342 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~  419 (521)
                      ..+..+...+...|++++|...|++.....+  .+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3556666677778888888888888765554  356677888888888888888888887742 2 33466888888889


Q ss_pred             HhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHH
Q 009967          420 QIHSNVELGEFAARRILALD------PEDVSSYVMLSNALS  454 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~  454 (521)
                      ...|++++|+..|+++++.+      |.++.++..+..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            99999999999999999988      877777777766543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.58  E-value=5.2e-07  Score=74.55  Aligned_cols=110  Identities=16%  Similarity=0.002  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 009967          340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLG  417 (521)
Q Consensus       340 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~  417 (521)
                      +...+..+...+...|++++|...|+++....+  .+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            345677777888888999999999998876554  356778888888889999999988888742 233 4668888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967          418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSN  451 (521)
Q Consensus       418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  451 (521)
                      ++...|++++|+..|+++++++|+++..+...+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            8888899999999999999988888876555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.57  E-value=9.2e-07  Score=69.73  Aligned_cols=98  Identities=9%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          375 LKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      .+...+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|+..++++++..|+++.++..++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34557888999999999999999999984 3344 677899999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhC
Q 009967          453 LSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       453 ~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +.+.|++++|...+++..+.
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999998754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.57  E-value=6.7e-07  Score=74.90  Aligned_cols=127  Identities=11%  Similarity=0.055  Sum_probs=99.0

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH-HHhcCCH--
Q 009967          317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL-LSRSGRF--  393 (521)
Q Consensus       317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--  393 (521)
                      ...|++++|...+++..... +.+...+..+...+...|++++|...|+++....+  .++..+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence            45678888999998887753 34667888888889999999999999999875554  456678888888 7788998  


Q ss_pred             HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967          394 KEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY  446 (521)
Q Consensus       394 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  446 (521)
                      ++|...+++.. ..| +...+..+...+...|++++|+..|+++++..|+++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            99999998743 234 567888888999999999999999999999999876543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.56  E-value=6.5e-06  Score=75.24  Aligned_cols=158  Identities=11%  Similarity=0.071  Sum_probs=79.7

Q ss_pred             HHHHHcCCCHHHHHHHHhhCCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009967          181 ICGLLKRERFEDALKLFQEMPHR-----N----VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA  251 (521)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  251 (521)
                      +..+...|++++|...+++..+.     +    ...+..+...+...+++++|+..|++........+....        
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~--------  153 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ--------  153 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH--------
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH--------
Confidence            34455555555555555553321     1    112333555555666677777777766653211111100        


Q ss_pred             hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CC----hhHHHHHHHHHHHcCC
Q 009967          252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE------RN----IVTWNAVICGYAQNGR  321 (521)
Q Consensus       252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~~~  321 (521)
                                            ...+++.+..+|...|++++|...|+++.+      .+    ..+|..+...|...|+
T Consensus       154 ----------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~  211 (293)
T 3u3w_A          154 ----------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR  211 (293)
T ss_dssp             ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence                                  012344555555555555555555554441      11    1255556666666666


Q ss_pred             hHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhhc-cHHHHHHHHHHch
Q 009967          322 GEEAIEFFERMRI----NGIRPN-GVTLLGLLWACNHTG-LVEKGYSYFSQAK  368 (521)
Q Consensus       322 ~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~  368 (521)
                      +++|...+++..+    .+..+. ..++..+..++...| ++++|...++++.
T Consensus       212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            6666666665543    122222 345666666666666 3466666666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.56  E-value=9.4e-05  Score=68.06  Aligned_cols=172  Identities=11%  Similarity=0.031  Sum_probs=104.1

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-C
Q 009967          215 YSQTGRNEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-G-S  290 (521)
Q Consensus       215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~  290 (521)
                      ..+.+..++|+++++.++..+  |+..| ++.--.++...| .++++..+++.+....++ +..+|+.-..++.+. + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence            334444567777777777643  54333 343334444455 366666666666666554 566666666555555 5 6


Q ss_pred             HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc---
Q 009967          291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGE--------EAIEFFERMRINGIRPNGVTLLGLLWACNHTGL---  356 (521)
Q Consensus       291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---  356 (521)
                      +++++++++.+.+   .|..+|+.-.-.+.+.|.++        ++++.++++.+.. +-|...|+.....+.+.+.   
T Consensus       141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence            7788888888776   34456665555555555555        7777777777754 3356666666666655554   


Q ss_pred             ----HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC
Q 009967          357 ----VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR  392 (521)
Q Consensus       357 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  392 (521)
                          ++++.+.++++....+  -|...|+.+-..+.+.|+
T Consensus       220 ~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCC
Confidence                5677777777665554  455566666666665554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.55  E-value=2e-06  Score=66.69  Aligned_cols=96  Identities=18%  Similarity=0.230  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      ...+..+...+...|++++|.+.++++.  .+.+...+..+...+...|++++|+..++++.+..|+++.++..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            4678889999999999999999998853  24467788899999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhC
Q 009967          455 VAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       455 ~~g~~~~A~~~~~~m~~~  472 (521)
                      ..|++++|...++++.+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999998764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=1.8e-06  Score=67.68  Aligned_cols=97  Identities=14%  Similarity=0.095  Sum_probs=86.8

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      +...+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|+..++++++..|+++..+..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            34567888999999999999999998843 2 446778889999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 009967          454 SVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       454 ~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...|++++|...+++..+.
T Consensus        91 ~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhc
Confidence            9999999999999998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.55  E-value=1.1e-06  Score=67.49  Aligned_cols=97  Identities=8%  Similarity=0.053  Sum_probs=86.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      ....+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34567888999999999999999999853 2 446778899999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 009967          454 SVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       454 ~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...|++++|...+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            9999999999999998754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.54  E-value=7.3e-07  Score=71.62  Aligned_cols=108  Identities=11%  Similarity=-0.006  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ  420 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~  420 (521)
                      .+..+...+...|++++|...|+++....+  .++..|..+..+|.+.|++++|...+++.. . +.+...+..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            455566667788888888888888765554  456677778888888888888888887742 2 334567778888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      ..|++++|+..|+++++..|+++........+
T Consensus        98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            99999999999999999988877665544333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.53  E-value=1.2e-06  Score=72.32  Aligned_cols=92  Identities=8%  Similarity=-0.003  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      .+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..|+++++++|+++.+|..++.+|...
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34444445555555555555554421 1 223444444555555555555555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHH
Q 009967          457 GKWDNVSNIRREMK  470 (521)
Q Consensus       457 g~~~~A~~~~~~m~  470 (521)
                      |++++|...|++..
T Consensus        93 g~~~~A~~~~~~al  106 (164)
T 3sz7_A           93 ADYKGAKEAYEKGI  106 (164)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            55555555555444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=1.7e-06  Score=69.62  Aligned_cols=95  Identities=16%  Similarity=0.074  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN  451 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  451 (521)
                      ...+..+...+...|++++|.+.+++. ...|+    ...+..+...+...|++++|+..++++++..|+++.++..++.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            334555555555556666666555552 23444    3455555555666666666666666666666666666666666


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q 009967          452 ALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       452 ~~~~~g~~~~A~~~~~~m~~  471 (521)
                      ++...|++++|...+++..+
T Consensus       108 ~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.50  E-value=1.7e-06  Score=71.20  Aligned_cols=126  Identities=13%  Similarity=-0.030  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967          309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS  388 (521)
Q Consensus       309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (521)
                      +..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++.....+  .+...+..+..++.
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~   92 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHH
Confidence            3334444444444444444444444321 12333444444444445555555555554443322  23334444555555


Q ss_pred             hcCCHHHHHHHHhhCC-CCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 009967          389 RSGRFKEAKEFLYDLP-FDP-GIGFWKA--LLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       389 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      ..|++++|...+++.. ..| +...+..  .+..+...|++++|+..+++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            5555555555554421 111 2222222  22224445555555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.50  E-value=1.1e-06  Score=72.29  Aligned_cols=63  Identities=10%  Similarity=0.038  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ..|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            467777777888888888888888888888888888888888888888888888888876643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.50  E-value=2.7e-06  Score=72.73  Aligned_cols=131  Identities=13%  Similarity=-0.014  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHh---CCCCC--Ch
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRI----NGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGML--KP  377 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~  377 (521)
                      ++..+...+...|++++|...+++...    .+..| ...++..+...+...|++++|...+++....   .+..+  ..
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  107 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS  107 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            344444444444444444444444333    11111 1123444444455555555555555444322   11111  12


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGI----GFWKALLGGCQIHSNVELGEFAARRILAL  438 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  438 (521)
                      ..+..+...+...|++++|...+++..    ..++.    .++..+...+...|++++|.+.+++++++
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            234445555555555555555554421    01111    13445555566666777776666666653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.48  E-value=7.2e-07  Score=70.07  Aligned_cols=93  Identities=9%  Similarity=0.001  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hHHHHH
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDL-PFD-PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV-------SSYVML  449 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l  449 (521)
                      .+..+...+.+.|++++|++.|++. ... .+...|..+..+|...|++++|++.++++++++|++.       .+|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3445555556666666666666552 122 2344566666666666666666666666666655432       245556


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 009967          450 SNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       450 ~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      +.++...|++++|++.|++..+
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            6666666777777777666543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.46  E-value=2e-06  Score=68.33  Aligned_cols=113  Identities=12%  Similarity=-0.082  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHH
Q 009967          339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALL  416 (521)
Q Consensus       339 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~  416 (521)
                      .+...+..+...+...|++++|...|+++....+  .+...+..+..++...|++++|...+++.. . +.+...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            3556777777778888888888888888765554  346677888888888888888888887642 2 34566888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHH
Q 009967          417 GGCQIHSNVELGEFAARRILALDPE-----DVSSYVMLSNAL  453 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~  453 (521)
                      .++...|++++|+..|+++++..|+     +..+...+..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999988776     455555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.46  E-value=1.2e-06  Score=74.91  Aligned_cols=48  Identities=15%  Similarity=0.073  Sum_probs=24.9

Q ss_pred             cCCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967          186 KRERFEDALK---LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR  233 (521)
Q Consensus       186 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  233 (521)
                      ..|++++|.+   .+..-......++..+...+...|++++|...+++...
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   54 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ   54 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3455555555   44332223345566666666666666666666666544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.46  E-value=3.3e-05  Score=71.11  Aligned_cols=214  Identities=12%  Similarity=0.093  Sum_probs=157.5

Q ss_pred             chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc-C-ChHHHHHH
Q 009967          255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG-SMEDSLLVFDKLTE---RNIVTWNAVICGYAQN-G-RGEEAIEF  328 (521)
Q Consensus       255 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~A~~~  328 (521)
                      ..++|..+.+.++..++. +..+++.--.++...| .+++++++++.+..   .+..+|+.-...+... + ++++++++
T Consensus        69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            345788899999988776 6777887777888888 59999999999875   4556888877777776 7 89999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhhccHH--------HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC-------H
Q 009967          329 FERMRINGIRPNGVTLLGLLWACNHTGLVE--------KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR-------F  393 (521)
Q Consensus       329 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~  393 (521)
                      ++.+.+.. +-|..+|+.-...+...|.++        ++.++++++.+..+  -|...|+....++.+.++       +
T Consensus       148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--~N~SAW~~R~~lL~~l~~~~~~~~~~  224 (349)
T 3q7a_A          148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--RNNSAWGWRWYLRVSRPGAETSSRSL  224 (349)
T ss_dssp             HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccccchHHH
Confidence            99998754 336667776655566656655        89999999986665  567778888888877776       6


Q ss_pred             HHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCchH
Q 009967          394 KEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNV--------------------ELGEFAARRILALD------PEDVSS  445 (521)
Q Consensus       394 ~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~~  445 (521)
                      +++++.+++.. . +-|...|+.+-..+...|..                    ........++....      +.++.+
T Consensus       225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a  304 (349)
T 3q7a_A          225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA  304 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence            78888887642 3 45677888877777766653                    33334444443332      457889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          446 YVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       446 ~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +..++..|...|+.++|.++++.+.+.
T Consensus       305 l~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          305 LEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999998643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.46  E-value=4.7e-07  Score=82.31  Aligned_cols=88  Identities=16%  Similarity=0.044  Sum_probs=42.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcC
Q 009967          146 GSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTG  219 (521)
Q Consensus       146 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~  219 (521)
                      +..+...+...|++++|...|++...  | +...|..+..++.+.|++++|+..+++..+   .+...+..+..+|...|
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   86 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            33344444444444444444444332  1 233333444444444444444444444332   23455666666666666


Q ss_pred             ChHHHHHHHHHHHH
Q 009967          220 RNEEAVNLFIEMLR  233 (521)
Q Consensus       220 ~~~~a~~~~~~m~~  233 (521)
                      ++++|...|++...
T Consensus        87 ~~~~A~~~~~~al~  100 (281)
T 2c2l_A           87 SYDEAIANLQRAYS  100 (281)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            67666666666554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.46  E-value=1.4e-06  Score=68.47  Aligned_cols=104  Identities=15%  Similarity=0.022  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C----CCC----HHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F----DPG----IGFWK  413 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~  413 (521)
                      ++..+...+.+.|++++|+..|+++.+..+  .+...|..+..+|.+.|++++|++.+++.. .    .++    ..+|.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            344455555566666666666666554433  234455566666666666666666655421 1    111    12566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967          414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML  449 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  449 (521)
                      .+..++...|++++|++.|++++...| ++.....+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l  122 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV  122 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence            677778888899999999999888877 55554433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=4.8e-06  Score=66.98  Aligned_cols=113  Identities=10%  Similarity=-0.071  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHH
Q 009967          340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWK  413 (521)
Q Consensus       340 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~  413 (521)
                      +...+..+...+...|++++|...|++.....   |+    ...+..+..+|...|++++|...+++.. . +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            44556666666777777777777777765222   34    4566777777777888888877777632 2 33566778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      .+..++...|++++|...|+++++.+|+++.++..+.....+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            888888899999999999999999999888888777766543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.45  E-value=1.1e-06  Score=70.43  Aligned_cols=62  Identities=11%  Similarity=0.031  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchHH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILAL-------DPEDVSSY----VMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .|..+..++...|++++|+..+++++++       +|++..+|    +..+.++...|++++|+..|++..+.
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            7888888888888888888888888888       99999999    99999999999999999999998653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.45  E-value=4.4e-07  Score=77.69  Aligned_cols=94  Identities=13%  Similarity=-0.010  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-G----------------IGFWKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      .+..+...+.+.|++++|...|++.. ..| +                ...+..+..++...|++++|+..++++++.+|
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            34455555666666666666665421 111 1                26788888899999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       441 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +++.++..++.+|...|++++|...|++..+.
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.42  E-value=2.2e-06  Score=83.67  Aligned_cols=96  Identities=10%  Similarity=0.049  Sum_probs=76.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      ...|..+..+|.+.|++++|+..+++.. . +.+...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4568888899999999999999988742 2 4467789999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHH-HHHHHHhC
Q 009967          455 VAGKWDNVSN-IRREMKEK  472 (521)
Q Consensus       455 ~~g~~~~A~~-~~~~m~~~  472 (521)
                      +.|+++++.. .++.|...
T Consensus       397 ~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          397 KAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999988764 55655433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.41  E-value=0.00015  Score=66.39  Aligned_cols=231  Identities=15%  Similarity=0.101  Sum_probs=139.5

Q ss_pred             HhcCCh-HHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhcc----------hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          216 SQTGRN-EEAVNLFIEMLREGLVPNHST-LPCAIIAAANIAA----------LGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       216 ~~~~~~-~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      .+.|.+ ++|+.++..+...  .|+..| ++.--..+...+.          ++.+..+++.+....++ +..+|+.-..
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w  116 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW  116 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            345555 4678888887764  355443 2222222222222          56777777777776655 6677777666


Q ss_pred             HHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh---
Q 009967          284 FYAKCG--SMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTLLGLLWACNHT---  354 (521)
Q Consensus       284 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---  354 (521)
                      ++.+.+  .++++..+++.+.+   .|..+|+.-.-.+...|. ++++++.+.++.+.. +-|...|+.....+...   
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence            777777  47888888888875   566777777777777777 588888888888754 34556666555554443   


Q ss_pred             -----------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHhhCC-CCCCHHH
Q 009967          355 -----------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS-----------GRFKEAKEFLYDLP-FDPGIGF  411 (521)
Q Consensus       355 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~  411 (521)
                                 +.++++.+.+.......+  -|...|+.+-..+.+.           +.++++++.++++. ..||. .
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P--~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~  272 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K  272 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence                       457778888877765555  4555565554444443           34556666665532 34443 2


Q ss_pred             HHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          412 WKALLGG-----CQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       412 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      |..+..+     ....|..+++...+.++++++|....-|..+...+
T Consensus       273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            3222221     12345666777777777777776665555554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.41  E-value=7.3e-07  Score=87.53  Aligned_cols=118  Identities=10%  Similarity=0.004  Sum_probs=94.3

Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVE  426 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~  426 (521)
                      ..+...|++++|.+.++++.+..+  .+...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            345677888888888888875554  35678888889999999999999888874 2334 5678889999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHH--HHhcCChHHHHHHHHH
Q 009967          427 LGEFAARRILALDPEDVSSYVMLSNA--LSVAGKWDNVSNIRRE  468 (521)
Q Consensus       427 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~  468 (521)
                      +|++.|+++++..|+++.++..++.+  +.+.|++++|++.+++
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999888  8899999999999884

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.39  E-value=1.4e-06  Score=68.50  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHH
Q 009967          383 MVDLLSRSGRFKEAKEFLYDLP-FDPG-I---GFWKALLGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSNALS  454 (521)
Q Consensus       383 l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~  454 (521)
                      +...+...|++++|...++++. ..|+ .   ..+..+..++...|++++|+..|+++++..|++   +.++..++.++.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            3444445555555555554421 1121 1   244445555556666666666666666666655   455666666666


Q ss_pred             hcCChHHHHHHHHHHHh
Q 009967          455 VAGKWDNVSNIRREMKE  471 (521)
Q Consensus       455 ~~g~~~~A~~~~~~m~~  471 (521)
                      ..|++++|...++++.+
T Consensus        88 ~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.39  E-value=2.3e-06  Score=79.92  Aligned_cols=117  Identities=9%  Similarity=-0.022  Sum_probs=95.8

Q ss_pred             hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----------------HHHHHHHH
Q 009967          354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----------------IGFWKALL  416 (521)
Q Consensus       354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----------------~~~~~~l~  416 (521)
                      .+++++|...++......+  .+...+..+...|.+.|++++|...|++.. ..|+                ...|..+.
T Consensus       126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence            3455556655555432221  235578889999999999999999998742 2333                47899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .++...|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.39  E-value=9.8e-05  Score=67.60  Aligned_cols=217  Identities=7%  Similarity=-0.038  Sum_probs=154.3

Q ss_pred             Hhhcch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhhcCC---CChhHHHHHHHHH
Q 009967          251 ANIAAL-GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS----------MEDSLLVFDKLTE---RNIVTWNAVICGY  316 (521)
Q Consensus       251 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~  316 (521)
                      .+.|.+ ++|..+.+.++..++. +..+++.--.++...+.          ++++..+++.+..   .+..+|+.-...+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            344444 4788888888887665 55555554444433332          6788888888764   5667888888888


Q ss_pred             HHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc---
Q 009967          317 AQNG--RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL-VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS---  390 (521)
Q Consensus       317 ~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  390 (521)
                      ...+  ++++++.+++.+.+.. +-|..+|+.-...+...|. ++++.+.++++....+  -|...|+....++.+.   
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHSCC
T ss_pred             hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhhhc
Confidence            8877  4899999999999864 3466777776666777787 6899999999986665  5666777666666554   


Q ss_pred             -----------CCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCchHH
Q 009967          391 -----------GRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH-----------SNVELGEFAARRILALDPEDVSSY  446 (521)
Q Consensus       391 -----------g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~  446 (521)
                                 +.++++++.+.+.. . +.|..+|+-+-..+...           +.++++++.++++++..|++...+
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l  275 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL  275 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence                       45788888887742 2 44666787666665554           457899999999999999886655


Q ss_pred             HHHHHHH---HhcCChHHHHHHHHHHHh
Q 009967          447 VMLSNAL---SVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       447 ~~l~~~~---~~~g~~~~A~~~~~~m~~  471 (521)
                      ..++...   ...|..+++...+.++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          276 LTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            5544332   245778888999998875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.34  E-value=1.1e-05  Score=63.19  Aligned_cols=106  Identities=12%  Similarity=0.027  Sum_probs=71.9

Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHH
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQ  420 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~  420 (521)
                      +...+...|++++|...|+.+....+..+. ...+..+..++.+.|++++|...+++.. ..|+    ...+..+..++.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            444566677777777777777644442221 1356667777777777777777777642 2233    456777788888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      ..|++++|+..|++++...|+++.........
T Consensus        88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            88999999999999999999877665544443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.32  E-value=9.8e-06  Score=63.37  Aligned_cols=109  Identities=9%  Similarity=-0.021  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C----CCC----HHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F----DPG----IGFWK  413 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~  413 (521)
                      .+..+...+...|++++|...++++....+  .+...+..+..+|...|++++|...+++.. .    .++    ...+.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            344445555555566666665555543332  234455555556666666666666555431 1    122    44666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      .+...+...|++++|...|+++++..| ++.....+..+..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            777778888888888888888888877 5666666665544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.32  E-value=2.9e-06  Score=66.48  Aligned_cols=96  Identities=6%  Similarity=0.023  Sum_probs=84.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED-------VSSYV  447 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~  447 (521)
                      ...+..+...+...|++++|...+++..  .+.+...+..+...+...|++++|+..+++++...|++       +.++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            3567888999999999999999998742  24567788899999999999999999999999988766       88999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          448 MLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       448 ~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .++.++...|++++|...+++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999999999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.31  E-value=7.9e-07  Score=68.68  Aligned_cols=82  Identities=10%  Similarity=0.028  Sum_probs=45.0

Q ss_pred             cCCHHHHHHHHhhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 009967          390 SGRFKEAKEFLYDL-PF---DPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN  464 (521)
Q Consensus       390 ~g~~~~A~~~~~~~-~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  464 (521)
                      .|++++|+..|++. ..   .|+ ...+..+..++...|++++|+..|+++++.+|+++.++..++.++...|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            34455555555442 11   122 23455555556666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHh
Q 009967          465 IRREMKE  471 (521)
Q Consensus       465 ~~~~m~~  471 (521)
                      .+++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.30  E-value=3.9e-06  Score=63.65  Aligned_cols=99  Identities=14%  Similarity=0.044  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC---CHHHHHHHHHH
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP---GIGFWKALLGG  418 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~  418 (521)
                      .+..+...+...|++++|...++++....+  .+...+..+..++...|++++|.+.+++. ...|   +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            444555566666677777777766654443  34556666777777777777777777653 2223   46677777777


Q ss_pred             HHhc-CCHHHHHHHHHHHHhcCCCCc
Q 009967          419 CQIH-SNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       419 ~~~~-g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      +... |++++|++.+++++...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            8888 888888888888888877543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.29  E-value=4.3e-06  Score=79.00  Aligned_cols=138  Identities=9%  Similarity=0.005  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL  386 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (521)
                      ..+..+...+.+.|++++|...|++..+.  .|...          .....+       ......+  .+..+|..+..+
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~~~~--~~~~~~~nla~~  282 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAKLQP--VALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGGGHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHHHHH--HHHHHHHHHHHH
Confidence            34666667777777777777777766541  01000          000111       1100111  234578889999


Q ss_pred             HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 009967          387 LSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN  464 (521)
Q Consensus       387 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  464 (521)
                      |.+.|++++|++.+++. ...| +...+..+..++...|++++|+..|+++++++|+++.++..+..++...++.+++.+
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999874 3344 567889999999999999999999999999999999999999999999988887765


Q ss_pred             H
Q 009967          465 I  465 (521)
Q Consensus       465 ~  465 (521)
                      .
T Consensus       363 ~  363 (370)
T 1ihg_A          363 A  363 (370)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.29  E-value=5.1e-06  Score=64.48  Aligned_cols=97  Identities=14%  Similarity=0.043  Sum_probs=62.8

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhc
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIH  422 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~  422 (521)
                      ..+...+...|++++|...|+++....+  .+...+..+..++.+.|++++|+..+++. ...| +...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3444556677777777777777765544  35556777777777777777777777663 2233 455777777777788


Q ss_pred             CCHHHHHHHHHHHHhcCCCCc
Q 009967          423 SNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      |++++|+..++++++.+|++.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            888888888888888777543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.28  E-value=4.6e-06  Score=81.83  Aligned_cols=118  Identities=10%  Similarity=-0.016  Sum_probs=77.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH
Q 009967          281 LISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV  357 (521)
Q Consensus       281 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  357 (521)
                      +...+.+.|++++|.+.|++..+   .+..+|..+..+|.+.|++++|...+++..+.. +.+..++..+..++...|++
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            34456677788888888877653   345677777778888888888888888777753 23455777777777788888


Q ss_pred             HHHHHHHHHchHhCCCCCChhHHHHHHHH--HHhcCCHHHHHHHHh
Q 009967          358 EKGYSYFSQAKLEDPGMLKPEHYACMVDL--LSRSGRFKEAKEFLY  401 (521)
Q Consensus       358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  401 (521)
                      ++|...|+++.+..+-.+  ..+..+..+  +.+.|++++|.+.++
T Consensus        91 ~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888887765554323  334444444  667777777777776

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.27  E-value=4.6e-06  Score=68.59  Aligned_cols=78  Identities=13%  Similarity=-0.006  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV-SSYVMLSNAL  453 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~  453 (521)
                      ...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++...|++++|+..|+++++++|+++ .+...+..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4578888899999999999999888742 2 44577899999999999999999999999999999887 4455554443


Q ss_pred             H
Q 009967          454 S  454 (521)
Q Consensus       454 ~  454 (521)
                      .
T Consensus       143 ~  143 (162)
T 3rkv_A          143 E  143 (162)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.27  E-value=3.2e-06  Score=69.06  Aligned_cols=93  Identities=17%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cch
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DVS  444 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~  444 (521)
                      ++..+...+...|++++|.+.+++..    ..++    ...+..+...+...|++++|.+.++++++..+.      ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            44455555556666666655555421    0111    235566667777888888888888887764221      245


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          445 SYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       445 ~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      ++..++.++...|++++|...+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            678888999999999999999888764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.22  E-value=8.1e-05  Score=72.05  Aligned_cols=25  Identities=12%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCC
Q 009967          211 MIGGYSQTGRNEEAVNLFIEMLREG  235 (521)
Q Consensus       211 l~~~~~~~~~~~~a~~~~~~m~~~~  235 (521)
                      -...+.+.|++++|++.|..+.+..
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~   34 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKD   34 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            3456778889999999998888754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=2.7e-05  Score=75.42  Aligned_cols=153  Identities=10%  Similarity=0.018  Sum_probs=87.1

Q ss_pred             HHHHHcCCCHHHHHHHHhhCCC--C---C---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC
Q 009967          181 ICGLLKRERFEDALKLFQEMPH--R---N---------------VVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPN  239 (521)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~~~~--~---~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~  239 (521)
                      ...+.+.|++++|++.|..+.+  +   +               ..++..+...|...|++++|.+.+..+...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4567889999999999988753  1   1               1247788899999999999999998876531 1122


Q ss_pred             hhhH----HHHHHHHHhhcchHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C--
Q 009967          240 HSTL----PCAIIAAANIAALGMGKSFHACAVKF----LGKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLTE----R--  304 (521)
Q Consensus       240 ~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~--  304 (521)
                      ..+.    ..+-..+...|+.+.+..++......    +..+ ...++..+...|...|++++|..+++.+..    .  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2111    11112223345566666665554432    1111 123445555566666666666655554431    0  


Q ss_pred             ---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009967          305 ---NIVTWNAVICGYAQNGRGEEAIEFFERMR  333 (521)
Q Consensus       305 ---~~~~~~~li~~~~~~~~~~~A~~~~~~m~  333 (521)
                         ...++..++..|...|++++|..++++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence               11345555555556666666666555543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.20  E-value=3.2e-06  Score=78.94  Aligned_cols=148  Identities=9%  Similarity=-0.060  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967          306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD  385 (521)
Q Consensus       306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  385 (521)
                      ...+..+...+.+.|++++|...|++....  .|+...       +...++.+++...+.           ...|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence            345677777788889999999999987764  355432       233444444443321           136888899


Q ss_pred             HHHhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH-HhcCChHHH
Q 009967          386 LLSRSGRFKEAKEFLYDLP-FD-PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL-SVAGKWDNV  462 (521)
Q Consensus       386 ~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A  462 (521)
                      +|.+.|++++|+..+++.. .. .+...|..+..++...|++++|+..|+++++++|+++.++..+..+. ...+..+.+
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998742 33 46778899999999999999999999999999999999988888874 455677888


Q ss_pred             HHHHHHHHhCC
Q 009967          463 SNIRREMKEKG  473 (521)
Q Consensus       463 ~~~~~~m~~~g  473 (521)
                      ...|++|.+..
T Consensus       319 ~~~~~~~l~~~  329 (338)
T 2if4_A          319 KEMYKGIFKGK  329 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHhhCCC
Confidence            88888876543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.15  E-value=1.3e-05  Score=59.60  Aligned_cols=66  Identities=17%  Similarity=0.075  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       407 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .+...+..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            456688888999999999999999999999999999999999999999999999999999987654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.15  E-value=1.2e-05  Score=78.46  Aligned_cols=64  Identities=9%  Similarity=0.023  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4578888999999999999999999999999999999999999999999999999999998764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.14  E-value=2.9e-05  Score=75.71  Aligned_cols=123  Identities=12%  Similarity=0.045  Sum_probs=96.0

Q ss_pred             HHhhccHHHHHHHHHHchHhCC--C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHH-HHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDP--G---MLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIG-FWKA  414 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~  414 (521)
                      +...|++++|+.++++......  +   .|+ ..+++.|..+|...|++++|+.++++..         ..|+.. +++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4577889999888887653321  1   122 3478889999999999999999887631         234433 7888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          415 LLGGCQIHSNVELGEFAARRILA-----LDPEDVSS---YVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       415 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      |...|...|++++|+.+++++++     .+|++|.+   ...+..++...|++++|..+++++.+..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987     57887765   4577888889999999999999998744

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.13  E-value=8.8e-06  Score=65.28  Aligned_cols=107  Identities=10%  Similarity=-0.046  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-----C-----hhHHHHHHHHHHhcCCHHHHHHHHhhC-CC-------
Q 009967          344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-----K-----PEHYACMVDLLSRSGRFKEAKEFLYDL-PF-------  405 (521)
Q Consensus       344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------  405 (521)
                      +......+...|++++|...|++.....+-.|     +     ...|..+..++.+.|++++|+..+++. ..       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            33444445566666666666666553333211     1     226777777788888888877777652 23       


Q ss_pred             CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          406 DPGI-GFW----KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       406 ~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                      .|+. ..|    .....++...|++++|+..|++++++.|++...+..+.
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~  143 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE  143 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            6764 477    88999999999999999999999999998776544443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.12  E-value=1.9e-05  Score=74.62  Aligned_cols=113  Identities=8%  Similarity=-0.005  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 009967          341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGGC  419 (521)
Q Consensus       341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~  419 (521)
                      ...+..+...+...|++++|...|+++....+   ..          ......+++..      ..| +...|..+..++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GS----------RAAAEDADGAK------LQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence            34566677777788888888888877753211   00          00011111111      122 345788899999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...|++++|+..++++++.+|+++.++..++.+|...|++++|+..|++..+.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.10  E-value=3.9e-06  Score=64.69  Aligned_cols=94  Identities=16%  Similarity=0.093  Sum_probs=62.2

Q ss_pred             hccHHHHHHHHHHchHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009967          354 TGLVEKGYSYFSQAKLEDP-GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEF  430 (521)
Q Consensus       354 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~  430 (521)
                      .|++++|...|+++..... -+.+...+..+..+|...|++++|...+++.. . +.+...+..+..++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            4666777777777652210 01234466777777777888888887777642 2 3345677778888888889999999


Q ss_pred             HHHHHHhcCCCCchHHH
Q 009967          431 AARRILALDPEDVSSYV  447 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~  447 (521)
                      .++++++..|+++....
T Consensus        83 ~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHhCCCcHHHHH
Confidence            99999888887776543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.08  E-value=2.5e-06  Score=64.83  Aligned_cols=93  Identities=12%  Similarity=-0.087  Sum_probs=74.6

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHH
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED------VSSYV  447 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~  447 (521)
                      +...+..+...+.+.|++++|.+.+++.. . +.+...+..+..++...|++++|+..++++++.+|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            45567777888888888888888887742 2 3456788888889999999999999999999999987      77888


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 009967          448 MLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       448 ~l~~~~~~~g~~~~A~~~~~~  468 (521)
                      .++.++...|++++|...+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            888888888887777665544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.06  E-value=1.3e-05  Score=74.85  Aligned_cols=152  Identities=9%  Similarity=-0.025  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT  354 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  354 (521)
                      ...+..+...+.+.|++++|...|++..+.+....     .+...++.+++...+.          ...+..+..++.+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~  243 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence            45677788889999999999999998765222111     1122233333332221          13677788888899


Q ss_pred             ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 009967          355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGI-GFWKALLGG-CQIHSNVELGEFA  431 (521)
Q Consensus       355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~-~~~~g~~~~A~~~  431 (521)
                      |++++|...++++....+  .+...|..+..+|...|++++|...|++.. ..|+. ..+..+... ....+..+.+...
T Consensus       244 g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998875554  466788889999999999999999998853 45543 355555544 3445778888899


Q ss_pred             HHHHHhcCCCCc
Q 009967          432 ARRILALDPEDV  443 (521)
Q Consensus       432 ~~~~~~~~p~~~  443 (521)
                      |++++...|.++
T Consensus       322 ~~~~l~~~p~~~  333 (338)
T 2if4_A          322 YKGIFKGKDEGG  333 (338)
T ss_dssp             ------------
T ss_pred             HHHhhCCCCCCC
Confidence            999999888654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.05  E-value=0.00021  Score=71.41  Aligned_cols=168  Identities=12%  Similarity=-0.012  Sum_probs=125.6

Q ss_pred             HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc--
Q 009967          291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGR----------GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG--  355 (521)
Q Consensus       291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--  355 (521)
                      .++|.+.++.+.+   .+..+|+.--.++...|+          ++++++.++.+.+.. +-+..+|..-..++.+.+  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence            4566777777764   234566666666666565          888888888888753 224557777667777778  


Q ss_pred             cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc----------
Q 009967          356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG-RFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIH----------  422 (521)
Q Consensus       356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~----------  422 (521)
                      +++++.+.++++.+..+  -+...|+.-..++.+.| .++++++.++++. ..| +..+|+.....+...          
T Consensus       124 ~~~~el~~~~k~l~~d~--~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence            67889999998886665  46667777777777888 8888888888753 333 566787777765552          


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967          423 ----SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN  461 (521)
Q Consensus       423 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  461 (521)
                          +.++++++.+++++..+|++..+|..+...+.+.++.++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                567999999999999999999999999999999888555

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.02  E-value=4.5e-05  Score=55.54  Aligned_cols=69  Identities=7%  Similarity=0.023  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          406 DPGIGFWKALLGGCQIHSN---VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       406 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      +++...+..+..++...++   .++|..+++++++.+|+++.+...++..+.+.|++++|+.+|+++.+...
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567778888888765544   79999999999999999999999999999999999999999999987654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.00  E-value=4e-05  Score=55.45  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967          377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS  454 (521)
Q Consensus       377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  454 (521)
                      ...+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|+..++++++.+|+++.++..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3456667777777777777777776632 2 3355677778888888888889999999988888888888888888876


Q ss_pred             hcC
Q 009967          455 VAG  457 (521)
Q Consensus       455 ~~g  457 (521)
                      +.|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.00  E-value=3.3e-05  Score=62.86  Aligned_cols=132  Identities=14%  Similarity=0.055  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF  284 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  284 (521)
                      .++..+...+...|++++|...+++....... ++...                               ...++..+...
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~   58 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-------------------------------ERIAYSNLGNA   58 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH-------------------------------HHHHHHHHHHH
Confidence            35666667777777777777777766542100 11000                               01233444555


Q ss_pred             HHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 009967          285 YAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRP-NGVTLLGLLWA  350 (521)
Q Consensus       285 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~  350 (521)
                      +...|++++|...+++..+     .+    ...+..+...+...|++++|...+++..+.    +..+ ...++..+...
T Consensus        59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  138 (164)
T 3ro3_A           59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA  138 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence            5555555555555554432     11    234555666666677777777776665431    1111 12355666667


Q ss_pred             HHhhccHHHHHHHHHHch
Q 009967          351 CNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~  368 (521)
                      +...|++++|...+++..
T Consensus       139 ~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A          139 YTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHH
Confidence            777778887777777664

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.99  E-value=9.7e-05  Score=55.73  Aligned_cols=65  Identities=9%  Similarity=0.023  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +...+..+...+...|++++|+..|+++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45678888889999999999999999999999999999999999999999999999999998764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.97  E-value=2.8e-05  Score=75.84  Aligned_cols=115  Identities=11%  Similarity=0.080  Sum_probs=89.6

Q ss_pred             HHHhcCCHHHHHHHHhhCC------C---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HHH
Q 009967          386 LLSRSGRFKEAKEFLYDLP------F---DPGI-GFWKALLGGCQIHSNVELGEFAARRILA-----LDPEDVS---SYV  447 (521)
Q Consensus       386 ~~~~~g~~~~A~~~~~~~~------~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~  447 (521)
                      .+...|++++|+.++++..      .   .|+. .+++.|+.+|...|++++|+.+++++++     .+|++|.   +++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            4567899999998887631      2   3333 3889999999999999999999999987     4676654   688


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 009967          448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE  518 (521)
Q Consensus       448 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  518 (521)
                      .|+..|...|++++|..++++..+--..                 .-| ..||.++++...+.+.+..++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THG-PSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999987643111                 112 4799999999988888866654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.95  E-value=2.8e-05  Score=62.21  Aligned_cols=97  Identities=12%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009967          353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA  432 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  432 (521)
                      +.+.+++|...+++..+..+  .+...|..+..++...++++.+...+                      +.+++|+..|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~l   69 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKF   69 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHH
Confidence            34456666666666654444  34455555555655555544333322                      1378999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCC
Q 009967          433 RRILALDPEDVSSYVMLSNALSVAG-----------KWDNVSNIRREMKEKG  473 (521)
Q Consensus       433 ~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~g  473 (521)
                      +++++++|++..+|..++.+|...|           ++++|++.|++..+..
T Consensus        70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            9999999999999999999999875           8999999999988653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.89  E-value=6.7e-05  Score=57.29  Aligned_cols=66  Identities=14%  Similarity=0.072  Sum_probs=54.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       407 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .+...+..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|...|++..+.
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            346677778888888888888888888888888888888888888888888888888888887653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.82  E-value=0.00029  Score=55.79  Aligned_cols=112  Identities=9%  Similarity=-0.054  Sum_probs=65.8

Q ss_pred             ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 009967          355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEF  430 (521)
Q Consensus       355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~  430 (521)
                      +++++|..+|++.. ..+ .+.  ..  |...|...+.+++|.+.|++.....+...+..|...|..    .+|+++|++
T Consensus         9 ~d~~~A~~~~~~aa-~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKAC-ELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHH-HTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHH-cCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            34555555555553 222 111  12  445555555555555555553323445555555555555    567777777


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 009967          431 AARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~  474 (521)
                      .|+++.+.  .++..+..++..|..    .+++++|...|++..+.|.
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            77777665  366777777777777    6777777777777776664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.79  E-value=0.00028  Score=50.78  Aligned_cols=64  Identities=19%  Similarity=0.246  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4577888888999999999999999999999999999999999999999999999999998764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.76  E-value=9.7e-05  Score=70.93  Aligned_cols=116  Identities=12%  Similarity=0.184  Sum_probs=86.9

Q ss_pred             HHHHHhcCCHHHHHHHHhhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---H
Q 009967          384 VDLLSRSGRFKEAKEFLYDLP------FDPG----IGFWKALLGGCQIHSNVELGEFAARRILA-----LDPEDVS---S  445 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~  445 (521)
                      +..+.+.|++++|+.++++..      ..|+    ..+++.++.+|...|++++|+.+++++++     .+|++|.   .
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556778888887776521      2333    23788888889999999999999999887     4566654   6


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 009967          446 YVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR  517 (521)
Q Consensus       446 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  517 (521)
                      ++.|+..|...|++++|..++++..+--..                 .-| ..||..++++..|++...+++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence            888999999999999999999987642110                 112 479999999999999888776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.68  E-value=0.00093  Score=66.74  Aligned_cols=149  Identities=11%  Similarity=-0.016  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhcc----------HHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967          320 GRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGL----------VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS  388 (521)
Q Consensus       320 ~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (521)
                      ...++|++.++++....  |+. ..|+.--.++...|+          ++++..+++.+....+  -+..+|..-..++.
T Consensus        43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~  118 (567)
T 1dce_A           43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLS  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence            34578899999998853  554 466665556666666          8999999999986665  46667887788888


Q ss_pred             hcC--CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-------
Q 009967          389 RSG--RFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHS-NVELGEFAARRILALDPEDVSSYVMLSNALSVA-------  456 (521)
Q Consensus       389 ~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------  456 (521)
                      +.|  +++++++.++++.  ...+..+|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+.       
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            889  7799999999863  2557778998888888888 999999999999999999999999999998874       


Q ss_pred             -------CChHHHHHHHHHHHhC
Q 009967          457 -------GKWDNVSNIRREMKEK  472 (521)
Q Consensus       457 -------g~~~~A~~~~~~m~~~  472 (521)
                             ++++++++.+++....
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHhh
Confidence                   5678999998887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.66  E-value=0.0001  Score=70.65  Aligned_cols=103  Identities=12%  Similarity=0.034  Sum_probs=76.2

Q ss_pred             cCCHHHHHHHHhhC-----C-CC---CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HHHHHHH
Q 009967          390 SGRFKEAKEFLYDL-----P-FD---PGI-GFWKALLGGCQIHSNVELGEFAARRILA-----LDPEDVS---SYVMLSN  451 (521)
Q Consensus       390 ~g~~~~A~~~~~~~-----~-~~---~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~  451 (521)
                      .|++++|+.++++.     . +.   |+. .+++.|..+|...|++++|+.+++++++     .+|++|.   +++.|+.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46777777776652     1 13   332 3788899999999999999999999887     4666654   6888999


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHH
Q 009967          452 ALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR  510 (521)
Q Consensus       452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  510 (521)
                      .|...|++++|..++++..+--..                 .-| ..||.++++...|+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEV-----------------AHG-KDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTCHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHH-----------------HcC-CCChHHHHHHHHHh
Confidence            999999999999999987643111                 112 47898888877765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.61  E-value=0.00031  Score=53.43  Aligned_cols=80  Identities=14%  Similarity=-0.075  Sum_probs=51.9

Q ss_pred             HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      |...|+++....+  .+...+..+..+|...|++++|...+++.. . +.+...|..+..++...|++++|+..|+++++
T Consensus         4 a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555543332  345566667777777777777777776632 2 33455777777777788888888888888877


Q ss_pred             cCCC
Q 009967          438 LDPE  441 (521)
Q Consensus       438 ~~p~  441 (521)
                      ..|.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            7663

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.58  E-value=0.0012  Score=52.22  Aligned_cols=112  Identities=13%  Similarity=0.001  Sum_probs=89.7

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHH
Q 009967          320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKE  395 (521)
Q Consensus       320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  395 (521)
                      +++++|...|++..+.| .|+..    +...|...+.+++|.++|++.. ..+   ++..+..|..+|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            46788999999988877 44444    6666777788888999999886 443   66778888888887    789999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 009967          396 AKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDP  440 (521)
Q Consensus       396 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p  440 (521)
                      |.+.|++.....+...+..|...|..    .+|.++|+..|+++.+.+.
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999886545677788888888888    8899999999999988753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.56  E-value=0.00087  Score=53.56  Aligned_cols=126  Identities=14%  Similarity=0.086  Sum_probs=83.5

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH----------HHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967          317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV----------EKGYSYFSQAKLEDPGMLKPEHYACMVDL  386 (521)
Q Consensus       317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (521)
                      .+.+.+++|.+.++...+.. +.+...|..+..++...+++          ++|+..|+++.+..+  .+...|..+..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence            34566888888888888753 33566777777777777654          578888887775554  345567777777


Q ss_pred             HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 009967          387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR  466 (521)
Q Consensus       387 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  466 (521)
                      |...|++            .|+..         ...|++++|++.|+++++++|++......+-.       .++|.++.
T Consensus        90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~  141 (158)
T 1zu2_A           90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLH  141 (158)
T ss_dssp             HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHH
T ss_pred             HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhcc
Confidence            7766643            34432         11378999999999999999977544333322       25556655


Q ss_pred             HHHHhCC
Q 009967          467 REMKEKG  473 (521)
Q Consensus       467 ~~m~~~g  473 (521)
                      -.+...+
T Consensus       142 ~~~~~~~  148 (158)
T 1zu2_A          142 AEAYKQG  148 (158)
T ss_dssp             HHHHHSS
T ss_pred             Ccccccc
Confidence            5555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.42  E-value=0.00053  Score=50.42  Aligned_cols=64  Identities=13%  Similarity=0.162  Sum_probs=44.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967          383 MVDLLSRSGRFKEAKEFLYDLP-FDP-GIG-FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY  446 (521)
Q Consensus       383 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  446 (521)
                      ....+.+.|++++|.+.+++.. ..| +.. .+..+..++...|++++|+..|+++++.+|+++.++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            4556667777777777777642 233 455 677777777777777777777777777777776665

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.39  E-value=1.8e-06  Score=80.56  Aligned_cols=250  Identities=10%  Similarity=0.095  Sum_probs=142.8

Q ss_pred             ChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH
Q 009967           57 KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK  136 (521)
Q Consensus        57 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  136 (521)
                      ++++|.+.-++...|  ..|+.|..+....+...+|++.|-+      .-|+..|..++.++.+.|.++.-.+++....+
T Consensus        40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk  111 (624)
T 3lvg_A           40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK  111 (624)
T ss_dssp             CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred             ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            344444444444333  5677777777777777777665532      13555667777777777777777777766655


Q ss_pred             hCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCC--------------
Q 009967          137 VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH--------------  202 (521)
Q Consensus       137 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------  202 (521)
                      ..-.|  .+=+.|+-+|++.|++.+-++++   ..||..-...+..-|...|.++.|.-+|..+..              
T Consensus       112 ~~ke~--~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y  186 (624)
T 3lvg_A          112 KARES--YVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY  186 (624)
T ss_dssp             TCCST--TTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred             Hhccc--ccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            43233  33346677777777755432222   125666666677777777777777777666541              


Q ss_pred             ----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967          203 ----------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK  272 (521)
Q Consensus       203 ----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  272 (521)
                                .++.||..+-.+|...+.+.-|.-.--.+.-   .||  .+..++..|-..|.+++...+++...... .
T Consensus       187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-r  260 (624)
T 3lvg_A          187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-R  260 (624)
T ss_dssp             GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred             HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence                      3667788888888877777655332222221   111  22234445556666666666666555321 2


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHHHHHHHHcCChHHHH
Q 009967          273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----------RNIVTWNAVICGYAQNGRGEEAI  326 (521)
Q Consensus       273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~  326 (521)
                      ....+|+-|.-.|++- ++++..+.++..-.           .....|.-++-.|.+-.++|.|.
T Consensus       261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            3566667666666654 34444444443321           23345666776677666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.31  E-value=0.00081  Score=64.40  Aligned_cols=95  Identities=9%  Similarity=-0.020  Sum_probs=70.4

Q ss_pred             hhccHHHHHHHHHHchHhCC--CC---CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHH-HHHHHH
Q 009967          353 HTGLVEKGYSYFSQAKLEDP--GM---LK-PEHYACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIG-FWKALL  416 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~l~  416 (521)
                      ..|++++|..++++......  +.   |+ ..+++.|..+|...|++++|+.++++..         ..|+.. +++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            34678888888877653211  11   22 2468888999999999999998887731         244443 788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-----cCCCCchHHH
Q 009967          417 GGCQIHSNVELGEFAARRILA-----LDPEDVSSYV  447 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~  447 (521)
                      ..|...|++++|+.+++++++     .+|++|.+-.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            999999999999999999988     5788887644

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.30  E-value=0.0027  Score=60.86  Aligned_cols=101  Identities=10%  Similarity=-0.137  Sum_probs=75.7

Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHH-H
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDP--GMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIG-F  411 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~  411 (521)
                      +..+...|++++|..++++......  +.|+    ..+++.|+.+|...|++++|+.++++..         ..|+.. +
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            4446677889999998888763322  1122    2468888999999999999999888631         234433 7


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchHHHH
Q 009967          412 WKALLGGCQIHSNVELGEFAARRILA-----LDPEDVSSYVM  448 (521)
Q Consensus       412 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~  448 (521)
                      ++.|...|...|++++|+.+++++++     .+|++|.+-..
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            88899999999999999999999987     58888876544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.29  E-value=0.024  Score=59.58  Aligned_cols=137  Identities=17%  Similarity=0.110  Sum_probs=82.1

Q ss_pred             HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHH
Q 009967          284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY  363 (521)
Q Consensus       284 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  363 (521)
                      .....|+++.|.++.+.+.  +...|..+...+.+.++++.|.+.|.++..         |..+...+...|+.+...++
T Consensus       661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            3456788888888776663  556788888888888888888888887643         22333444446666665555


Q ss_pred             HHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 009967          364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED-  442 (521)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-  442 (521)
                      -+... ..+   +   ++.-..+|.+.|++++|++++.++.                   ++++|..+.+.   .+|.. 
T Consensus       730 ~~~a~-~~~---~---~~~A~~~~~~~g~~~~a~~~~~~~~-------------------~~~~A~~lA~~---~~~~~~  780 (814)
T 3mkq_A          730 AKDAE-TTG---K---FNLAFNAYWIAGDIQGAKDLLIKSQ-------------------RFSEAAFLGST---YGLGDN  780 (814)
T ss_dssp             HHHHH-HTT---C---HHHHHHHHHHHTCHHHHHHHHHHTT-------------------CHHHHHHHHHH---TTCCHH
T ss_pred             HHHHH-HcC---c---hHHHHHHHHHcCCHHHHHHHHHHcC-------------------ChHHHHHHHHH---hCCChH
Confidence            54443 322   1   3444455666777777777766553                   56666665543   33322 


Q ss_pred             --chHHHHHHHHHHhcCChH
Q 009967          443 --VSSYVMLSNALSVAGKWD  460 (521)
Q Consensus       443 --~~~~~~l~~~~~~~g~~~  460 (521)
                        +.....+...+...|+.+
T Consensus       781 ~i~~~~~~~~~~L~~~~~~~  800 (814)
T 3mkq_A          781 EVNDIVTKWKENLILNGKNT  800 (814)
T ss_dssp             HHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHHhccchh
Confidence              134444555555556543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.28  E-value=0.00085  Score=49.54  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA  367 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  367 (521)
                      .+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444444444444444444444444422 112234444444444444444444444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.24  E-value=0.0018  Score=51.12  Aligned_cols=88  Identities=16%  Similarity=0.030  Sum_probs=51.9

Q ss_pred             cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhCC-CC-C--CHHHHHHHHHHHHhcCCHHHH
Q 009967          356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG---RFKEAKEFLYDLP-FD-P--GIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      ....+++-|.+.....+  ++..+...+..++++.+   +.++++.+++++- .. |  +...+-.|.-++.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            34455555555432222  56666666777777766   4456666666532 12 3  233455555666777777777


Q ss_pred             HHHHHHHHhcCCCCchH
Q 009967          429 EFAARRILALDPEDVSS  445 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~  445 (521)
                      .+.++.+++.+|++..+
T Consensus        91 ~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHhcCCCCHHH
Confidence            77777777777766544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.21  E-value=0.22  Score=49.80  Aligned_cols=114  Identities=9%  Similarity=0.024  Sum_probs=62.0

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          320 GRGEEAIEFFERMRINGIRPNGVTL----LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       320 ~~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                      .+.+.|...|....... ..+....    ..+.......+...++...+.... ...  .+.....-.+....+.|+++.
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MRS--QSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-ccC--CChHHHHHHHHHHHHCCCHHH
Confidence            36788888887775432 2233222    222222333442345555555543 222  333334444455557788888


Q ss_pred             HHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967          396 AKEFLYDLPFDP--GIGFWKALLGGCQIHSNVELGEFAARRILA  437 (521)
Q Consensus       396 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  437 (521)
                      |...|+.|...+  .....-=+..++...|+.++|..+|+++.+
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            888888876322  222222344456677888888888888764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.20  E-value=0.023  Score=52.24  Aligned_cols=136  Identities=8%  Similarity=-0.125  Sum_probs=72.6

Q ss_pred             CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---hc-----cHHHHHHHHHHchH
Q 009967          304 RNIVTWNAVICGYA--QNG---RGEEAIEFFERMRINGIRPNG-VTLLGLLWACNH---TG-----LVEKGYSYFSQAKL  369 (521)
Q Consensus       304 ~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---~~-----~~~~a~~~~~~~~~  369 (521)
                      .+...|...+++..  ..+   +..+|..+|++..+.  .|+- ..+..+..++..   .+     ........++....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            45666777665543  233   357888888888874  4653 344433333321   00     11111111111110


Q ss_pred             hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       370 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      ......++.+|..+...+...|++++|...+++.. ..|+...|..+...+...|++++|.+.|+++..++|.
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            11112455566666666666677777777766632 3466656656666666677777777777777777763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.16  E-value=0.0026  Score=46.49  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=24.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          419 CQIHSNVELGEFAARRILALDPEDVS-SYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +...|++++|+..|+++++.+|+++. ++..++.+|...|++++|...|++..
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33444444444444444444444444 44444444444444444444444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.12  E-value=0.0095  Score=54.79  Aligned_cols=134  Identities=10%  Similarity=0.005  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHH--Hh---hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh---cC-----C---HHHHHHHHh
Q 009967          338 RPNGVTLLGLLWAC--NH---TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR---SG-----R---FKEAKEFLY  401 (521)
Q Consensus       338 ~p~~~~~~~ll~~~--~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-----~---~~~A~~~~~  401 (521)
                      +.+...|...+++.  ..   ..+..+|..+|+++.+..|  -....|..+..+|.-   .+     .   ...+.+...
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP--~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP--EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            44556676666653  32   3446889999999986664  233445544444421   11     1   112222222


Q ss_pred             hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          402 DLPF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       402 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                      .+.. +.+..++..+...+...|++++|+..+++++.++| +...|..++..+.-.|++++|.+.+++......
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            2322 55677888888888888999999999999999997 677888999999999999999999999876543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.85  E-value=0.0049  Score=54.30  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             HHHHHHHhh-CCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHhc-CChHHH
Q 009967          394 KEAKEFLYD-LPFDPG---IGFWKALLGGCQI-----HSNVELGEFAARRILALDPED-VSSYVMLSNALSVA-GKWDNV  462 (521)
Q Consensus       394 ~~A~~~~~~-~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A  462 (521)
                      ..|...+++ +...|+   -..|..+...|..     -|+.++|.++|+++++++|+. ..++..++..+++. |+.+++
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            344444444 234666   3366777777777     489999999999999999974 99999999999885 999999


Q ss_pred             HHHHHHHHhCCCccCC
Q 009967          463 SNIRREMKEKGMTRVP  478 (521)
Q Consensus       463 ~~~~~~m~~~g~~~~~  478 (521)
                      .+.+++......+..|
T Consensus       260 ~~~L~kAL~a~p~~~P  275 (301)
T 3u64_A          260 DEALDRALAIDPESVP  275 (301)
T ss_dssp             HHHHHHHHHCCGGGCS
T ss_pred             HHHHHHHHcCCCCCCC
Confidence            9999998877665434

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.85  E-value=0.097  Score=39.77  Aligned_cols=147  Identities=13%  Similarity=0.022  Sum_probs=103.6

Q ss_pred             HHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967          310 NAVICG--YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL  387 (521)
Q Consensus       310 ~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (521)
                      ..|+.+  +.-.|..++..++..+....   .+..-++.++--....-+-+-..+.++.+-+-+.+              
T Consensus         9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------   71 (172)
T 1wy6_A            9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------   71 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------
Confidence            344443  44568888888888887764   35666777776666666767777777766322322              


Q ss_pred             HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967          388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR  467 (521)
Q Consensus       388 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  467 (521)
                      ..+|+.......+-.+.  .+...++..+.....+|+-+.-.+++..++...|.+|..+..++.+|.+.|+..+|.++++
T Consensus        72 s~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~  149 (172)
T 1wy6_A           72 DKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI  149 (172)
T ss_dssp             GGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence            13344444444444432  3344455667778889999999999999777667799999999999999999999999999


Q ss_pred             HHHhCCCc
Q 009967          468 EMKEKGMT  475 (521)
Q Consensus       468 ~m~~~g~~  475 (521)
                      +..+.|+.
T Consensus       150 ~AC~kG~k  157 (172)
T 1wy6_A          150 EACKKGEK  157 (172)
T ss_dssp             HHHHTTCH
T ss_pred             HHHHhhhH
Confidence            99999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.79  E-value=0.014  Score=61.28  Aligned_cols=153  Identities=14%  Similarity=0.071  Sum_probs=81.4

Q ss_pred             HHHhcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967          284 FYAKCGSMEDSLL-VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS  362 (521)
Q Consensus       284 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  362 (521)
                      .....+++++|.+ ++..+.  +......++..+.+.|.++.|.++.+.       |. .-    .......|+++.|.+
T Consensus       608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~  673 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARD  673 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHH
Confidence            3345677777766 443332  012225566666677777777655431       11 11    122345677777777


Q ss_pred             HHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967          363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED  442 (521)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  442 (521)
                      +.+.+       .++..|..+...+.+.|+++.|++.|.++. .     |..+...+...|+.+...++.+.+...+.  
T Consensus       674 ~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--  738 (814)
T 3mkq_A          674 LLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH-D-----LESLFLLHSSFNNKEGLVTLAKDAETTGK--  738 (814)
T ss_dssp             HHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred             HHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence            76544       355677777777777777777777777764 1     23333334445555544444443333221  


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHH
Q 009967          443 VSSYVMLSNALSVAGKWDNVSNIRRE  468 (521)
Q Consensus       443 ~~~~~~l~~~~~~~g~~~~A~~~~~~  468 (521)
                         +.....+|.+.|++++|.+++.+
T Consensus       739 ---~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          739 ---FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             ---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHcCCHHHHHHHHHH
Confidence               22233334445555555555444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.62  E-value=0.00046  Score=64.80  Aligned_cols=251  Identities=9%  Similarity=0.027  Sum_probs=153.6

Q ss_pred             chHHHHHHHhhcCC-Cchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC
Q 009967           30 ETQKASVQKLETPA-IRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS  107 (521)
Q Consensus        30 ~~~~~~~~~~~~g~-~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~  107 (521)
                      ++.+..+...+.+. --++ |.++....|.+.+|++.|=+.  .|+..|..++....+.|.+++-++.+...++..  -+
T Consensus        40 ~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke  115 (624)
T 3lvg_A           40 NLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE  115 (624)
T ss_dssp             CSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CS
T ss_pred             ccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cc
Confidence            34555555444330 1122 889999999999998776444  466788899999999999999999988766543  34


Q ss_pred             hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----------------
Q 009967          108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----------------  171 (521)
Q Consensus       108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------  171 (521)
                      +..=+.++-+|++.++..+.++++.       .||..-...+.+-|...|.++.|.-+|..+..                
T Consensus       116 ~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~  188 (624)
T 3lvg_A          116 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA  188 (624)
T ss_dssp             TTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred             cccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            4455678899999998877655542       46666667788888888998888888876642                


Q ss_pred             --------CCchhHHHHHHHHHcCCCHHHHHHHHhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 009967          172 --------PNVVSYTTMICGLLKRERFEDALKLFQEMP-HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST  242 (521)
Q Consensus       172 --------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  242 (521)
                              .++.+|-.+-.+|...+.+.-|.-.--.+. .+|  -...++..|-..|.+++-+.+++.-... -+.....
T Consensus       189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm  265 (624)
T 3lvg_A          189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGM  265 (624)
T ss_dssp             STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred             HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence                    577899999999998887765543322211 111  0112334455666666666666655421 1234445


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHH-cCCC------CChhHHHHHHHHHHhcCCHHHHH
Q 009967          243 LPCAIIAAANIAALGMGKSFHACAVK-FLGK------LDVFVGNSLISFYAKCGSMEDSL  295 (521)
Q Consensus       243 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~A~  295 (521)
                      |+-+.-.|++- .+++..+.++..-. .+++      -....|.-++-.|.+-.+++.|.
T Consensus       266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            55555444443 22222222221111 1111      03445666666666666666554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.59  E-value=0.0086  Score=47.27  Aligned_cols=65  Identities=8%  Similarity=-0.039  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          407 PGIGFWKALLGGCQIHS---NVELGEFAARRILALD-P-EDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       407 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      ++..+...+..++++.+   +.++++.++++..+.+ | ++...++.++-+|.+.|++++|+++++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            45555555555555554   4445666666665555 4 2455555556666666666666666555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.24  Score=40.12  Aligned_cols=46  Identities=20%  Similarity=0.322  Sum_probs=24.9

Q ss_pred             HHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 009967          285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM  332 (521)
Q Consensus       285 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m  332 (521)
                      ..+.|+++.|.++.+.+  .+...|..|.......|+++-|.+.|.+.
T Consensus        15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            34455555555555544  24445555555555555555555555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.50  E-value=0.031  Score=41.28  Aligned_cols=71  Identities=10%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS  450 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  450 (521)
                      ...+...+.+.|+++.|...++...         ..+....+..|..++.+.|+++.|+..+++++...|+++.+...+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            4445555555555555555554421         0234557888888999999999999999999999999887755554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.36  E-value=0.026  Score=42.82  Aligned_cols=98  Identities=14%  Similarity=-0.013  Sum_probs=59.9

Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH---HHHHHhhCCC-C-C--CHHHHHHHHHHH
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE---AKEFLYDLPF-D-P--GIGFWKALLGGC  419 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-~--~~~~~~~l~~~~  419 (521)
                      ++..-.....+..+.+-|........  ++..+-..+..++.+..+..+   ++.+++++-. . |  .....-.|.-++
T Consensus         7 ~l~~~~~~~~l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~   84 (126)
T 1nzn_A            7 VLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            33444455566666766666543322  666666777777777776655   6666666431 2 2  122444455567


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967          420 QIHSNVELGEFAARRILALDPEDVSSY  446 (521)
Q Consensus       420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~  446 (521)
                      .+.|++++|.+.++.+++..|++..+.
T Consensus        85 yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           85 YRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            777777777777777777777765543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.2  Score=40.61  Aligned_cols=129  Identities=9%  Similarity=0.012  Sum_probs=90.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCH
Q 009967          314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF  393 (521)
Q Consensus       314 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  393 (521)
                      ......|+++.|.++.+++      .+...|..|.......|+++-|.+.|.+..       |   +..+.-.|.-.|+.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCH
Confidence            4456789999999987765      578899999999999999999999998873       2   56677777788888


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       394 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      +...++-+....+.+   ++.-...+...|++++++++|.+.-+.    +    .........|-.+.|.++.+++
T Consensus        77 e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r~----~----eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           77 NKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGSL----P----LAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTCH----H----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCCh----H----HHHHHHHHcCcHHHHHHHHHHh
Confidence            776665443221222   333444566789999999998765331    1    1111222356778888888775

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.02  E-value=0.055  Score=38.92  Aligned_cols=68  Identities=10%  Similarity=0.021  Sum_probs=51.3

Q ss_pred             CChhHHHHHHHHHHhcCC---HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967          375 LKPEHYACMVDLLSRSGR---FKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPED  442 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  442 (521)
                      .++..+..+..++...++   .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|++
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            566677777777765544   68888888774 2344 46677777888889999999999999999988873

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.98  E-value=0.045  Score=40.37  Aligned_cols=65  Identities=17%  Similarity=0.013  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          408 GIGFWKALLGGCQIHSNVELGEFAARRILALD-------PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +......+...+...|+++.|..-|+++++..       +..+.++..++.++.+.|++++|..++++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34455678888999999999999999998842       346778999999999999999999999998754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.88  E-value=0.31  Score=37.61  Aligned_cols=71  Identities=10%  Similarity=-0.025  Sum_probs=36.3

Q ss_pred             CCChhHHHHHHHHHHhcCCHH---HHHHHHhhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          374 MLKPEHYACMVDLLSRSGRFK---EAKEFLYDLP-FDP-G-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       374 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                      .|++.+--.+..++.+..+.+   +++.+++++- ..| + ....-.|.-++.+.|++++|.++.+.+++..|+|..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            355555555666666655443   3444444421 122 1 223333444566666666666666666666665544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.71  E-value=0.22  Score=37.71  Aligned_cols=21  Identities=10%  Similarity=0.102  Sum_probs=10.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHhh
Q 009967          382 CMVDLLSRSGRFKEAKEFLYD  402 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~~~  402 (521)
                      .|.-++.+.|++++|.+.++.
T Consensus        79 ~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           79 YLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHH
Confidence            344444555555555555444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.49  E-value=0.049  Score=42.36  Aligned_cols=108  Identities=12%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHhhccH------HHHHHHHHHchHhCCCCCChh-HHHHHHHH------HHhcCCHHHHHHHHhhCC--
Q 009967          340 NGVTLLGLLWACNHTGLV------EKGYSYFSQAKLEDPGMLKPE-HYACMVDL------LSRSGRFKEAKEFLYDLP--  404 (521)
Q Consensus       340 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~--  404 (521)
                      |..+|-..+....+.|+.      ++.+++|+++...-+  |+.. .+...+..      +...++.++|.++|+.+.  
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            556777777777777887      788888888764443  4321 12221111      123466667777666541  


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967          405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML  449 (521)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  449 (521)
                      .+.=...|...+..-.++|+.+.|.+++.+++...|.+...+...
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a  134 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA  134 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            111155666666666777777777777777777776555444433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.45  E-value=0.02  Score=50.45  Aligned_cols=85  Identities=18%  Similarity=0.148  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHHh-cCCHHH
Q 009967          357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS-----GRFKEAKEFLYDL-PFDPG--IGFWKALLGGCQI-HSNVEL  427 (521)
Q Consensus       357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~-~g~~~~  427 (521)
                      ...|...++++.+..+--.+...|..+...|.+.     |+.++|.+.|++. .+.|+  ..++..+...++. .|+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            4455556666554443222344566666666663     6777777777662 23442  5556666666655 377777


Q ss_pred             HHHHHHHHHhcCCC
Q 009967          428 GEFAARRILALDPE  441 (521)
Q Consensus       428 A~~~~~~~~~~~p~  441 (521)
                      +.+.++++++..|.
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            77777777776664

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.41  E-value=0.19  Score=38.29  Aligned_cols=65  Identities=12%  Similarity=-0.000  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          407 PGIGFWKALLGGCQIHS---NVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       407 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      |...+-..+++++.+..   +..+++.+++.+...+|. ....+..++-++.+.|++++|+++.+.+.+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44444444444444433   334566666666665553 345566666666666666666666666553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.16  E-value=0.12  Score=52.73  Aligned_cols=55  Identities=11%  Similarity=0.004  Sum_probs=51.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK  470 (521)
Q Consensus       416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  470 (521)
                      +..|...|+++.|+.+.++++...|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            4457789999999999999999999999999999999999999999999999874

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.57  E-value=0.34  Score=37.71  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=20.8

Q ss_pred             ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967          355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD  402 (521)
Q Consensus       355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  402 (521)
                      ++.++|.++|+.++..+. .- ..+|-.....-.++|++..|.+++..
T Consensus        74 ~D~d~aR~vy~~a~~~hK-kF-AKiwi~~AqFEiRqgnl~kARkILg~  119 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCK-KF-AFVHISFAQFELSQGNVKKSKQLLQK  119 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCT-TB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhH-HH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            444555555555542211 11 33444444444455555555555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.25  E-value=1.3  Score=46.08  Aligned_cols=13  Identities=0%  Similarity=0.181  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHhC
Q 009967          460 DNVSNIRREMKEK  472 (521)
Q Consensus       460 ~~A~~~~~~m~~~  472 (521)
                      .+|+.++..+...
T Consensus       646 ~~aid~L~~L~~D  658 (963)
T 4ady_A          646 QSAIDVLDPLTKD  658 (963)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHccC
Confidence            5677777777643

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.84  E-value=5.9  Score=39.55  Aligned_cols=389  Identities=10%  Similarity=-0.070  Sum_probs=190.5

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG  127 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  127 (521)
                      -+..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+-..| ..                ..+.+
T Consensus        78 ~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~----------------~p~~c  139 (618)
T 1qsa_A           78 FVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS----------------QPNAC  139 (618)
T ss_dssp             HHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC----------------CCTHH
T ss_pred             HHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC----------------CcHHH
Confidence            34455556666666665555 22233333344555566666665655555544333 11                22333


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCC--h
Q 009967          128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN--V  205 (521)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~  205 (521)
                      -.+|....+.|.-.+..++ .-+......|+...|..+...+..........++..+..   ...+...........  .
T Consensus       140 ~~l~~~~~~~g~lt~~~~~-~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~~~~~~~  215 (618)
T 1qsa_A          140 DKLFSVWRASGKQDPLAYL-ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTGATDFTR  215 (618)
T ss_dssp             HHHHHHHHHTTCSCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccCCChhhH
Confidence            4445555544422222222 233555567777777777766632211122333333322   223333333322211  1


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HhhcchHHHHHHHHHHHHcCCCCChhHHHHH
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA----ANIAALGMGKSFHACAVKFLGKLDVFVGNSL  281 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  281 (521)
                      ..+...+.-+.+ .+.+.|...+....... ..+......+-...    ...+....+...+.......  .+.....-.
T Consensus       216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~  291 (618)
T 1qsa_A          216 QMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR  291 (618)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHH
Confidence            122222333333 37888999988886543 23333332222222    22332334444555443332  233334444


Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH
Q 009967          282 ISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE  358 (521)
Q Consensus       282 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  358 (521)
                      +....+.|+++.|...|..|....   ....-=+..++...|+.++|..+|+.+...    .  +|..++.+ .+.|...
T Consensus       292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~  364 (618)
T 1qsa_A          292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEY  364 (618)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCC
T ss_pred             HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCC
Confidence            555567899999999999998632   222333455677889999999999998742    2  34333322 2222210


Q ss_pred             HHHHHHHHchHhCCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009967          359 KGYSYFSQAKLEDPGMLK-PE-----HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA  432 (521)
Q Consensus       359 ~a~~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  432 (521)
                      .       . ......+. ..     .-..-+..+.+.|....|...+..+....+......+.......|.++.++...
T Consensus       365 ~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~  436 (618)
T 1qsa_A          365 E-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQAT  436 (618)
T ss_dssp             C-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             C-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            0       0 00011110 00     111234557788999999888776532344444444555556678888777665


Q ss_pred             HHHHhcCC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 009967          433 RRILALDP---EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV  477 (521)
Q Consensus       433 ~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~  477 (521)
                      .+....+.   .-|..|...+.-+.+.-.++.++-.---..+.++.|.
T Consensus       437 ~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~  484 (618)
T 1qsa_A          437 IAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK  484 (618)
T ss_dssp             HHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence            44332210   0122344555555555445544433233345555543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.45  E-value=5.9  Score=41.40  Aligned_cols=37  Identities=14%  Similarity=0.100  Sum_probs=24.6

Q ss_pred             hHHHHHHHhhcCCCchh---hhhhcccCCChhHHHHHhccCC
Q 009967           31 TQKASVQKLETPAIRTD---SVSCGSESDKFSSVHQVFDEVP   69 (521)
Q Consensus        31 ~~~~~~~~~~~g~~~~~---l~~~~~~~g~~~~A~~~~~~~~   69 (521)
                      |+.++....+..  .++   ++++..+.++.+.+.++|.++.
T Consensus       218 Lr~l~~Iy~k~~--~~dy~~a~~~ai~LnD~~li~~if~~l~  257 (963)
T 4ady_A          218 LRKSFDFLMNMP--NCDYLTLNKVVVNLNDAGLALQLFKKLK  257 (963)
T ss_dssp             HHHHHHHHHHSS--SCCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--chhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445555444433  233   7788888888888888888753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.41  E-value=0.25  Score=46.54  Aligned_cols=68  Identities=12%  Similarity=0.045  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCCc
Q 009967          412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-----EKGMTRVPG  479 (521)
Q Consensus       412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~  479 (521)
                      ...++..+...|++++|+..++.+...+|-+...+..++.++.+.|+..+|++.|+++.     +.|+.|.|.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            34456677888999999999999999999999999999999999999999999998874     358877665

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.54  E-value=6  Score=37.76  Aligned_cols=50  Identities=10%  Similarity=-0.114  Sum_probs=30.0

Q ss_pred             cchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 009967          254 AALGMGKSFHACAVKF-----LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE  303 (521)
Q Consensus       254 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  303 (521)
                      |+++.|.+.+-.+.+.     ...........++..|...|+|+...+.+..+.+
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk   84 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK   84 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            6677776665555442     2233455566677777777777776665555443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=91.67  E-value=3.5  Score=31.45  Aligned_cols=139  Identities=12%  Similarity=0.050  Sum_probs=77.3

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 009967          215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS  294 (521)
Q Consensus       215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  294 (521)
                      +.-.|..++..++..+....   .+..-|+.++=-....-+-+-..++++.+-+   -.|.          ..+|++...
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHH
Confidence            34567777777777776653   2333444444333333333333333333221   1111          123444444


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967          295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP  372 (521)
Q Consensus       295 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  372 (521)
                      ...+-.+.. +....+..+.....+|.-++-.+++.++... .+|+......+..+|.+.|+..++.+++.++- +.|
T Consensus        81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG  155 (172)
T 1wy6_A           81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC-KKG  155 (172)
T ss_dssp             HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-Hhh
Confidence            444443332 3344555667777778777777777775442 46777777777778888888888888777775 555

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.50  E-value=8.9  Score=35.72  Aligned_cols=55  Identities=15%  Similarity=-0.030  Sum_probs=23.4

Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHh
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLY  401 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~  401 (521)
                      ++..|...|++.+|..++.++.....-..+    ..++..-++.|...|++.++...+.
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~  163 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT  163 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            444455555555555554444332211111    1123334444555555555554443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.45  E-value=12  Score=40.83  Aligned_cols=145  Identities=10%  Similarity=0.011  Sum_probs=93.9

Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C----------------
Q 009967          245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----R----------------  304 (521)
Q Consensus       245 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------------  304 (521)
                      .++..+...+..+.+.++....     +.++..--.+..+|...|++++|.+.|.+...    .                
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            4445556666666655544332     22444445567788899999999999988752    0                


Q ss_pred             ------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967          305 ------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG--V--TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM  374 (521)
Q Consensus       305 ------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  374 (521)
                            -..-|..++..+-+.+.++.+.++-+...+..-.-+.  .  .|..+.+.+...|++++|...+-.+. ...  
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~--  968 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTP--  968 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSS--
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHH--
Confidence                  0123667778888888888888887776653211121  1  46677788888889998888887664 322  


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHH
Q 009967          375 LKPEHYACMVDLLSRSGRFKEAK  397 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~~~~A~  397 (521)
                      ........|+..++..|..+.-.
T Consensus       969 ~r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          969 LKKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCChhhhh
Confidence            34556777777777777655543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.40  E-value=1.3  Score=31.73  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967          322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL  386 (521)
Q Consensus       322 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (521)
                      .=+..+-++.+....+.|+.......+++|.+.+++..|.++++-++.+.+.  ...+|..+++-
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lqE   88 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQE   88 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Confidence            3456667777777788899999999999999999999999999998777763  34567766643

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.19  E-value=9.6  Score=35.51  Aligned_cols=287  Identities=11%  Similarity=0.013  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHhhcCCC--------CCchhHHHHHHHHHcC-CCHHHHHHHHhhCCC---CChhHH---
Q 009967          144 FVGSAILDLYIKLSSIEEATRVFEDTHN--------PNVVSYTTMICGLLKR-ERFEDALKLFQEMPH---RNVVSW---  208 (521)
Q Consensus       144 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~---~~~~~~---  208 (521)
                      .....|...|.+.|+.++..+++.....        ........++..+... +..+.-.++..+..+   ..-.+|   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677888888888888888877765        1233445566666553 223333333332221   111222   


Q ss_pred             ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-----HHHHHHHHHhhcchHHHHHHHHHHHHcC--CCCChhHH
Q 009967          209 ---NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-----LPCAIIAAANIAALGMGKSFHACAVKFL--GKLDVFVG  278 (521)
Q Consensus       209 ---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~  278 (521)
                         .-++..|...|++.+|.+++..+.+.=-..|..+     +..-+..|...+++..+...+.......  +.+++.+.
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               2467778888888888888877766311122222     2233344445555555555554443221  11122111


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH-HcCChHHHHHHHHHHHH----CCCCCC---HHHHHHHHHH
Q 009967          279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA-QNGRGEEAIEFFERMRI----NGIRPN---GVTLLGLLWA  350 (521)
Q Consensus       279 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~----~~~~p~---~~~~~~ll~~  350 (521)
                      ..+ .                          ..-...+. ..++|..|...|-+..+    .+ .|.   ...|..+...
T Consensus       180 a~i-~--------------------------~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aL  231 (394)
T 3txn_A          180 GAL-D--------------------------LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKI  231 (394)
T ss_dssp             HHH-H--------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHH
T ss_pred             HHH-H--------------------------HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHH
Confidence            111 0                          01111223 34555555555444321    11 011   1123222222


Q ss_pred             HHhhccHHHHHHHHH-HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHH---HHHHHHHHhcCC
Q 009967          351 CNHTGLVEKGYSYFS-QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFW---KALLGGCQIHSN  424 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~---~~l~~~~~~~g~  424 (521)
                      . . ++..+...++. ...... ..|....+..++.+| ..+++.+...+++...  +..|....   ..+....     
T Consensus       232 l-~-~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I-----  302 (394)
T 3txn_A          232 M-L-GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM-----  302 (394)
T ss_dssp             H-T-TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH-----
T ss_pred             H-c-CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-----
Confidence            1 1 22111112221 111111 235555566666665 5667877777777643  23444321   1111110     


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967          425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM  474 (521)
Q Consensus       425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  474 (521)
                         -...+.++  ..|-....+..++..+.-  ..+++...+-+|+..|.
T Consensus       303 ---r~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~  345 (394)
T 3txn_A          303 ---LEQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK  345 (394)
T ss_dssp             ---HHHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred             ---HHHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence               01111112  245566677777777654  67899999999998885

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.01  E-value=1  Score=35.83  Aligned_cols=30  Identities=17%  Similarity=0.076  Sum_probs=21.0

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967          376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPF  405 (521)
Q Consensus       376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  405 (521)
                      +.+.--.+..+|.+.|++++|+.+++.++.
T Consensus       121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A          121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            334444577778888888888888887763

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.04  E-value=2.8  Score=33.29  Aligned_cols=121  Identities=11%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             CCCCCCHH--HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhC--
Q 009967          335 NGIRPNGV--TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-------EHYACMVDLLSRSGRFKEAKEFLYDL--  403 (521)
Q Consensus       335 ~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--  403 (521)
                      .|+.|...  ++..-+..+...|.++.|+-+.+.+....+..|+.       .++..+.+++...|++.+|...|++.  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            34455443  23334455667777777777666654332222331       14455666677777777777766652  


Q ss_pred             -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          404 -----PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       404 -----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                           ...+..  ...+. .   ......       -.. .+.+...-+.++.+|.+.|++++|+.+++.+
T Consensus        92 ~~k~l~k~~s~--~~~~~-~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           92 QKKALSKTSKV--RPSTG-N---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHhcCCCc--ccccc-c---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                 101111  00000 0   000000       000 1224467788999999999999999999864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.93  E-value=1.1  Score=45.68  Aligned_cols=121  Identities=14%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             HHHHHHhcCC-hHHHHHHHHHhHHCCCCCChhhH--HHHHHHHcCCCC-hHHHHHHHHHHHHh------CCCCc------
Q 009967           79 IIGRFAKQHH-YEEAIYLFSRMLLLNIRPSEFTF--GSVIPSSTALED-LNLGKQLHAWATKV------GLQSN------  142 (521)
Q Consensus        79 l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~~------  142 (521)
                      ++..+...|+ ++.|+++|+++.+..  |....+  ..++..+...++ --+|.+++.+.++.      ..++.      
T Consensus       254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            3444444556 578999999998864  433332  233433334332 22455555554431      11211      


Q ss_pred             -----HHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CC-chhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967          143 -----VFVGSAILDLYIKLSSIEEATRVFEDTHN--PN-VVSYTTMICGLLKRERFEDALKLFQEMP  201 (521)
Q Consensus       143 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~  201 (521)
                           ......-.+.+...|+++-|.++-++...  |+ -.+|..|..+|...|+++.|+-.+..++
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                 11233334567778999999999988875  55 5589999999999999999999999886

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.01  E-value=3.2  Score=31.55  Aligned_cols=75  Identities=9%  Similarity=-0.059  Sum_probs=51.3

Q ss_pred             CCCCChhHHHHHHHHHHhcCCHH---HHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967          372 PGMLKPEHYACMVDLLSRSGRFK---EAKEFLYDLP-FDP--GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS  445 (521)
Q Consensus       372 ~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  445 (521)
                      +..|++.+--.+..++.+..+.+   +++.+++++- ..|  ....+-.|.-++.+.|++++|.+..+.+++..|+|..+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            44466676666777777776553   4555555532 234  23356667777889999999999999999999987665


Q ss_pred             H
Q 009967          446 Y  446 (521)
Q Consensus       446 ~  446 (521)
                      -
T Consensus       115 ~  115 (134)
T 3o48_A          115 G  115 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.49  E-value=17  Score=34.55  Aligned_cols=184  Identities=11%  Similarity=0.127  Sum_probs=105.9

Q ss_pred             CChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhcC
Q 009967          219 GRNEEAVNLFIEMLRE-----GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI----SFYAKCG  289 (521)
Q Consensus       219 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g  289 (521)
                      |+++.|++.+-.+.+.     +..........++..|...++++...+.+..+.+..... ......++    .......
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            4455555555444431     223334445566666666666666655555444332221 11222222    2222223


Q ss_pred             --CHHHHHHHHhhcCC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCH---HHHHHHHHHHH
Q 009967          290 --SMEDSLLVFDKLTE---R-------NIVTWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNG---VTLLGLLWACN  352 (521)
Q Consensus       290 --~~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~---~~~~~ll~~~~  352 (521)
                        +.+.-..+.+.+..   .       .......|...+...|++.+|..++..+..  .|..+..   ..+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              22333344444332   1       112345678889999999999999999764  3322221   25666777899


Q ss_pred             hhccHHHHHHHHHHchH---hCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967          353 HTGLVEKGYSYFSQAKL---EDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       353 ~~~~~~~a~~~~~~~~~---~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      ..+++.+|..++.++..   ..+..|+.  ..+...+..+...+++.+|-+.|.++
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999998742   12212221  34667788888899999998877654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=88.03  E-value=15  Score=33.20  Aligned_cols=44  Identities=11%  Similarity=-0.079  Sum_probs=20.6

Q ss_pred             CchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 009967          173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS  216 (521)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~  216 (521)
                      ++.....+...|.+.+++.+|+..|-.-.++++..|..++.-+.
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~  178 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWY  178 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            34444455555555566666655553222222344444443333

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.82  E-value=15  Score=33.11  Aligned_cols=164  Identities=9%  Similarity=0.016  Sum_probs=84.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCChhhHHHHHHHHHhhc
Q 009967          179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL----FIEMLREGLVPNHSTLPCAIIAAANIA  254 (521)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~~  254 (521)
                      ++..-|.+.+++++|++++-.-           ...+.+.|+...|-++    ++.+.+.++++|......++..+....
T Consensus        40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~  108 (336)
T 3lpz_A           40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ  108 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            3445555566666665554322           2233334444333222    233444455566555555555544333


Q ss_pred             c-----hHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 009967          255 A-----LGMGKSFHACAVKFL--GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE  327 (521)
Q Consensus       255 ~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~  327 (521)
                      .     ..-..+...+-.+.|  ..-++.....+...|.+.+++.+|+..|-.-.++.+..|..++.-+...+...+   
T Consensus       109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e---  185 (336)
T 3lpz_A          109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT---  185 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred             CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence            2     111222333333333  333778888899999999999999998853222333566555544444332111   


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       328 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                                 ++.+.-..++ -|...++...|..+++...
T Consensus       186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence                       1222222333 2455677777777665554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.55  E-value=15  Score=32.82  Aligned_cols=165  Identities=8%  Similarity=0.024  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCChhhHHHHHHHHHhh
Q 009967          178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN----LFIEMLREGLVPNHSTLPCAIIAAANI  253 (521)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~  253 (521)
                      .++..-|.+.+++++|++++..-           ...+.+.|+...|-+    +.+.+.+.+++++......++..+...
T Consensus        37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~  105 (312)
T 2wpv_A           37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL  105 (312)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            34445555566666665554332           223344455444333    234444456666666555555554432


Q ss_pred             c-----chHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChH
Q 009967          254 A-----ALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN---GRGE  323 (521)
Q Consensus       254 ~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~~  323 (521)
                      .     ..+-..+...+..+.|.  .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...   |...
T Consensus       106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~  185 (312)
T 2wpv_A          106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS  185 (312)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence            2     11222333333333332  236778888999999999999999887633322455555554433333   3222


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967          324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK  368 (521)
Q Consensus       324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  368 (521)
                      ++              +...-..++ -|...++...|..+++...
T Consensus       186 e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          186 TV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred             hH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence            21              111112222 2445678888888877664

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.48  E-value=3.1  Score=31.52  Aligned_cols=62  Identities=13%  Similarity=0.069  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967          323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL  386 (521)
Q Consensus       323 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (521)
                      =+..+-++.+....+.|+.......+++|.+.+|+..|.++|+-++.+.+  +...+|..+++-
T Consensus        70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lqE  131 (152)
T 2y69_E           70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHHH
Confidence            35566667777778889999999999999999999999999999987776  445567776643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.32  E-value=3.5  Score=38.62  Aligned_cols=71  Identities=6%  Similarity=-0.081  Sum_probs=53.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH-----hCCCCcHHHHHHH
Q 009967           78 TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-----VGLQSNVFVGSAI  149 (521)
Q Consensus        78 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l  149 (521)
                      .++..+...|++.+|+..+..+.... +-+...+..+|.++...|+..+|.+.|+...+     .|+.|...+-...
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            34556677888888888888887654 55777888888888889999998888887654     4888887765433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=86.26  E-value=13  Score=30.77  Aligned_cols=17  Identities=18%  Similarity=0.118  Sum_probs=6.5

Q ss_pred             cHHHHHHHHHHHHcCCC
Q 009967          142 NVFVGSAILDLYIKLSS  158 (521)
Q Consensus       142 ~~~~~~~l~~~~~~~g~  158 (521)
                      +...-...+..+.+.|+
T Consensus        32 ~~~vR~~A~~~L~~~~~   48 (211)
T 3ltm_A           32 SYYVRRAAAYALGKIGD   48 (211)
T ss_dssp             SHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHhCC
Confidence            33333333334433333

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=86.05  E-value=5.6  Score=28.47  Aligned_cols=62  Identities=13%  Similarity=0.071  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      .-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-+....-. ...+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence            4455666666666677777777777777777777777777777766654322 2345555554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=86.04  E-value=14  Score=30.70  Aligned_cols=154  Identities=8%  Similarity=-0.001  Sum_probs=64.1

Q ss_pred             hHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC
Q 009967           59 SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG  138 (521)
Q Consensus        59 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  138 (521)
                      +....+.+.+..++...-...+..+.+.|..+ +...+..+..   .++...-...+.++...++.+. ...+..+.+  
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~--   91 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK--   91 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT--
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc--
Confidence            33333444444455444444555555555432 2333333332   2344444444444444443222 222222221  


Q ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 009967          139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT  218 (521)
Q Consensus       139 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~  218 (521)
                       .++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.
T Consensus        92 -~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  170 (211)
T 3ltm_A           92 -DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI  170 (211)
T ss_dssp             -CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence             3444445555555555555433333333333344444444444444444433333333333334444444444444444


Q ss_pred             CC
Q 009967          219 GR  220 (521)
Q Consensus       219 ~~  220 (521)
                      +.
T Consensus       171 ~~  172 (211)
T 3ltm_A          171 GG  172 (211)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=85.99  E-value=11  Score=30.96  Aligned_cols=54  Identities=13%  Similarity=0.034  Sum_probs=36.7

Q ss_pred             cCCHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967          422 HSNVELGEFAARRILA--LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       422 ~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  475 (521)
                      .++...+.++|..+..  ++-..+..|...+..+...|++.+|.++|+.-++.+-+
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~  147 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR  147 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence            3446677777777666  44556677777777777777777777777776555443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=85.95  E-value=13  Score=30.48  Aligned_cols=17  Identities=6%  Similarity=-0.031  Sum_probs=6.8

Q ss_pred             CChhHHHHHHHHHHHcC
Q 009967          304 RNIVTWNAVICGYAQNG  320 (521)
Q Consensus       304 ~~~~~~~~li~~~~~~~  320 (521)
                      ++..+-...+.++...|
T Consensus       150 ~~~~vr~~A~~aL~~~~  166 (201)
T 3ltj_A          150 EDGWVRQSAADALGEIG  166 (201)
T ss_dssp             SSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            33333333344444444

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.04  E-value=37  Score=36.96  Aligned_cols=144  Identities=8%  Similarity=-0.058  Sum_probs=69.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc
Q 009967          311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS  390 (521)
Q Consensus       311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  390 (521)
                      .++..+...+.++.+.++..-     .+-+...--.+..++...|++++|.+.|++..  .++..+....          
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~----------  879 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQF----------  879 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSC----------
T ss_pred             HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhh----------
Confidence            344555566666655554332     12233333344455667777777777776652  2221111000          


Q ss_pred             CCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hHHHHHHHHHHhcCChHHHHH
Q 009967          391 GRFKEAKEFLYDLP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DV----SSYVMLSNALSVAGKWDNVSN  464 (521)
Q Consensus       391 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~----~~~~~l~~~~~~~g~~~~A~~  464 (521)
                      ........+..... ...-...|..++..+.+.+-++.+.++.+.+++..+. +.    ..|..+..++...|++++|..
T Consensus       880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence            00000011111111 0112334555666666667777777776666664322 22    145566666777777777766


Q ss_pred             HHHHHHh
Q 009967          465 IRREMKE  471 (521)
Q Consensus       465 ~~~~m~~  471 (521)
                      .+-.+..
T Consensus       960 aL~~~pd  966 (1139)
T 4fhn_B          960 ALMVLST  966 (1139)
T ss_dssp             HHHHHHH
T ss_pred             HHHhCCC
Confidence            6655443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=82.88  E-value=26  Score=31.35  Aligned_cols=165  Identities=10%  Similarity=0.076  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967          278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF----FERMRINGIRPNGVTLLGLLWACNH  353 (521)
Q Consensus       278 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~~  353 (521)
                      |.++..=|.+.+++++|.+++..           -...+.+.|+...|-++    ++-..+.+++++......++..+..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            45566667788888888877543           23445666776655554    4555667888888888877777644


Q ss_pred             hc--c------HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---
Q 009967          354 TG--L------VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH---  422 (521)
Q Consensus       354 ~~--~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---  422 (521)
                      ..  .      ..+|...-.+.- . ...-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+...   
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g-~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~  181 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFS-E-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDD  181 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTS-S-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCchHHHHHHHHHHHHhhcC-C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCC
Confidence            22  1      223333322221 1 112377788899999999999999988775221 12344444444443332   


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 009967          423 SNVELGEFAARRILALDPEDVSSYV-MLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      |...               ....|. ..+--|.-.|+...|..+++...+
T Consensus       182 ~~~~---------------e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          182 IEDS---------------TVAEFFSRLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             CCHH---------------HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             CCcc---------------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            2222               222222 223345677899999999887654

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=82.56  E-value=11  Score=26.83  Aligned_cols=85  Identities=13%  Similarity=0.012  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009967          256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN  335 (521)
Q Consensus       256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  335 (521)
                      .++|..+-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|..+-.  .+.|-.+++...+.++..+
T Consensus        22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s   97 (115)
T 2uwj_G           22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS   97 (115)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence            4555555555555443  11112222345678999999999999999899998887754  5778888888888888877


Q ss_pred             CCCCCHHHHH
Q 009967          336 GIRPNGVTLL  345 (521)
Q Consensus       336 ~~~p~~~~~~  345 (521)
                      | .|....|.
T Consensus        98 g-~p~~q~Fa  106 (115)
T 2uwj_G           98 S-DPALADFA  106 (115)
T ss_dssp             S-SHHHHHHH
T ss_pred             C-CHHHHHHH
Confidence            6 45444443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=82.42  E-value=19  Score=29.48  Aligned_cols=150  Identities=7%  Similarity=-0.017  Sum_probs=64.6

Q ss_pred             HHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc
Q 009967           63 QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN  142 (521)
Q Consensus        63 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  142 (521)
                      .+++.+..+|...-...+..+.+.|.......+. .+..   .++...-...+.++...++.+.. ..+..+..   .++
T Consensus        18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~   89 (201)
T 3ltj_A           18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DED   89 (201)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSS
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCC
Confidence            3444444555555555555555555433332232 2222   23444433444444444433222 22222222   345


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 009967          143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR  220 (521)
Q Consensus       143 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~  220 (521)
                      ..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.++.+....+...+..++..+-...+.++.+.|.
T Consensus        90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  167 (201)
T 3ltj_A           90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG  167 (201)
T ss_dssp             HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence            555555555555555544333444444444444444444454444443333333333333444444444444444443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=81.84  E-value=12  Score=26.71  Aligned_cols=85  Identities=15%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009967          256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN  335 (521)
Q Consensus       256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  335 (521)
                      .++|..+-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|..|-.  .+.|-.+++...+.++...
T Consensus        23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s   98 (116)
T 2p58_C           23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS   98 (116)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence            4555555555555443  11112222345678899999999999999999998887754  4668888888888788777


Q ss_pred             CCCCCHHHHH
Q 009967          336 GIRPNGVTLL  345 (521)
Q Consensus       336 ~~~p~~~~~~  345 (521)
                      | .|....|.
T Consensus        99 g-~p~~q~Fa  107 (116)
T 2p58_C           99 Q-DPRIQTFV  107 (116)
T ss_dssp             C-CHHHHHHH
T ss_pred             C-CHHHHHHH
Confidence            6 45444443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.99  E-value=5  Score=34.85  Aligned_cols=56  Identities=18%  Similarity=0.248  Sum_probs=38.2

Q ss_pred             HHHhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          386 LLSRSGRFKEAKEFLYD-LPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       386 ~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      .+.+.|++++|++.+.. ++..| |...-..|+..++-.|++++|.+-++-..+++|.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            34567777777766654 43344 4555666677777778888888888888777775

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=80.92  E-value=13  Score=26.50  Aligned_cols=56  Identities=9%  Similarity=0.104  Sum_probs=26.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHH
Q 009967          123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM  180 (521)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l  180 (521)
                      ..++|..+-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|..|
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL   76 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFAL   76 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence            45555555555554432  222222223344455555555555555555555444433

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=80.46  E-value=13  Score=26.45  Aligned_cols=74  Identities=8%  Similarity=-0.014  Sum_probs=35.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhh
Q 009967          122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE  199 (521)
Q Consensus       122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  199 (521)
                      ...++|..+-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|..|...  +.|-.+++...+..
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~   94 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR   94 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence            345566666555555432  222222223344555666666666555555555555444322  33444444444433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.34  E-value=28  Score=30.17  Aligned_cols=122  Identities=14%  Similarity=0.069  Sum_probs=70.5

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC-CCChhHHHHHHHHHHhcCCH
Q 009967          315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG-MLKPEHYACMVDLLSRSGRF  393 (521)
Q Consensus       315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  393 (521)
                      ...+.|++++|++....-++.. +-|...-..++..+|-.|++++|..-++...+..+. .|....|..+|.+-      
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------   78 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------   78 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence            4556788888888888777753 345555566777788888888888877776533321 11222344444332      


Q ss_pred             HHHH-HHHhhC--C--CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967          394 KEAK-EFLYDL--P--FDPGIGFWKALLGG--CQIHSNVELGEFAARRILALDPEDVS  444 (521)
Q Consensus       394 ~~A~-~~~~~~--~--~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~  444 (521)
                       ... ++|..-  +  ......-...++.+  ....|+.+.|.++-.++.+.-|..+.
T Consensus        79 -~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G  135 (273)
T 1zbp_A           79 -QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  135 (273)
T ss_dssp             -HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             -HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence             222 223221  1  12223344445555  34458888888888888877665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	521
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 42/319 (13%), Positives = 97/319 (30%), Gaps = 14/319 (4%)

Query: 152 LYIKLSSIEEATRVFED--THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           ++ +   ++ +          NP +    + +  + K                R    + 
Sbjct: 42  IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI 101

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
                 +        +   ++     L  N             + ALG  +   AC +K 
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161

Query: 270 LGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEE 324
           +          ++L   +   G +  ++  F+K        +  +  +     +    + 
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221

Query: 325 AIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383
           A+  + R   ++         L  ++     GL++     + +A    P    P+ Y  +
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYY--EQGLIDLAIDTYRRAIELQPHF--PDAYCNL 277

Query: 384 VDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIH-SNVELGEFAARRILALDPE 441
            + L   G   EA++     L   P        L   +    N+E      R+ L + PE
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 442 DVSSYVMLSNALSVAGKWD 460
             +++  L++ L   GK  
Sbjct: 338 FAAAHSNLASVLQQQGKLQ 356

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 10/181 (5%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIV---TWNAVICGYAQNGRGEEAIEFFER-MRI 334
            +L +   +    + ++  + +    +         + C Y + G  + AI+ + R + +
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
               P+    L         G V +    ++ A    P     +    + ++    G  +
Sbjct: 267 QPHFPDAYCNLANAL--KEKGSVAEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIE 322

Query: 395 EAKEFLYD-LPFDPGIGFWKALLGGCQIHS-NVELGEFAARRILALDPEDVSSYVMLSNA 452
           EA       L   P      + L         ++      +  + + P    +Y  + N 
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 453 L 453
           L
Sbjct: 383 L 383

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 33/194 (17%), Positives = 70/194 (36%), Gaps = 23/194 (11%)

Query: 153 YIKLSSIEEATRVFED--THNPNVV-SYTTMICGLLKRERFEDALKLFQ---EMPHRNVV 206
           +     I  A   FE   T +PN + +Y  +   L +   F+ A+  +     +   + V
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
               +   Y + G  + A++ +   +   L P+         A  N+A     K   A A
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPD------AYCNLANALKEKGSVAEA 290

Query: 267 VKFLGKL------DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYA 317
                             N+L +   + G++E+++ ++ K  E         + +     
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 318 QNGRGEEAIEFFER 331
           Q G+ +EA+  ++ 
Sbjct: 351 QQGKLQEALMHYKE 364

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	521
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.32
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.2
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.18
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.18
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.12
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.11
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.01
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.7
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.66
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.65
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.5
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.49
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.4
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.29
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.26
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.19
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.15
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.07
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.05
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.94
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.64
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.62
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.58
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.53
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.27
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.97
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.93
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.64
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.3
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.32
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.15
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.05
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.97
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.51
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.16
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	83.55

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.2e-23  Score=196.52  Aligned_cols=373  Identities=12%  Similarity=0.085  Sum_probs=281.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967           79 IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS  158 (521)
Q Consensus        79 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  158 (521)
                      +...+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            3455667788888888888877653 3345667777777777888888888888877764 4456677777888888888


Q ss_pred             HHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967          159 IEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEM---PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML  232 (521)
Q Consensus       159 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  232 (521)
                      +++|...+.....   .+...+..........+....+.......   ..................+....+...+....
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            8888887777654   22223333333333333333333333222   22344555566666777778888888777776


Q ss_pred             HCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHH
Q 009967          233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTW  309 (521)
Q Consensus       233 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~  309 (521)
                      ... +-+...+..+...+...|+++.|...+..+.+..+. +...+..+..++...|++++|...|++..+   .+...+
T Consensus       163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  240 (388)
T d1w3ba_         163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence            643 223455666777788888888888888888877654 677888899999999999999999988764   556678


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967          310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR  389 (521)
Q Consensus       310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (521)
                      ..+...+.+.|++++|...|++..+.. +-+..++..+..++...|++++|...++......+  .+...+..+..++.+
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC--ccchhhhHHHHHHHH
Confidence            888999999999999999999988753 23466888889999999999999999999875554  566788899999999


Q ss_pred             cCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          390 SGRFKEAKEFLYD-LPFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       390 ~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      .|++++|++.+++ +...|+ ..++..+..++...|++++|+..|+++++++|+++.+|..++.+|.+.||
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999988 444554 66888899999999999999999999999999999999999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-22  Score=191.18  Aligned_cols=372  Identities=12%  Similarity=0.086  Sum_probs=306.4

Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCH
Q 009967          114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERF  190 (521)
Q Consensus       114 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~  190 (521)
                      +...+.+.|++++|.+.++++.+.. +-+...+..+..+|.+.|++++|...|+++.+  | +..+|..+...+.+.|++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence            3445667799999999999999864 55678899999999999999999999998865  4 456888999999999999


Q ss_pred             HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHH
Q 009967          191 EDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV  267 (521)
Q Consensus       191 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  267 (521)
                      ++|+..+....+   .+...+..........+....+........... .................+....+...+....
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence            999999988765   344555566666666777777766666655543 3444555556666777778888888888777


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009967          268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL  344 (521)
Q Consensus       268 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~  344 (521)
                      ...+. +...+..+...+...|++++|...+++..+   .+...|..+...+...|++++|...+++..... +.+...+
T Consensus       163 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  240 (388)
T d1w3ba_         163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH  240 (388)
T ss_dssp             HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred             ccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence            76644 667788889999999999999999998764   455688999999999999999999999988754 3566778


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIH  422 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~  422 (521)
                      ..+...+...|++++|...|+++.+..+  .++.++..+..++...|++++|.+.++...  .+.+...+..+...+...
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence            8888899999999999999999875554  456789999999999999999999998743  256677889999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCc
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMN  502 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (521)
                      |++++|+..|+++++..|+++.++..++.+|.+.|++++|+..|++..+                          .+|+.
T Consensus       319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------l~P~~  372 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF  372 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCC
Confidence            9999999999999999999999999999999999999999999999764                          34666


Q ss_pred             HHHHHHHHHHHHHHH
Q 009967          503 DEIYAVLRSCTEQIR  517 (521)
Q Consensus       503 ~~i~~~l~~~~~~~~  517 (521)
                      ...+..|+.++..++
T Consensus       373 ~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         373 ADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            778888888877654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.7e-15  Score=135.71  Aligned_cols=271  Identities=15%  Similarity=0.065  Sum_probs=172.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 009967          210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC  288 (521)
Q Consensus       210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  288 (521)
                      .....+.+.|++++|+..|+++.+..  |+ ...+..+..++...|+++.|...+..+.+..+. +...+..+..+|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence            45666777888888888888877743  44 334444455555555555555555555544333 344444444455555


Q ss_pred             CCHHHHHHHHhhcCC--CChhH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 009967          289 GSMEDSLLVFDKLTE--RNIVT-WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS  365 (521)
Q Consensus       289 g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  365 (521)
                      |++++|.+.++....  |+... +......                    ....+.......+..+...+...+|...+.
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEG--------------------AGGAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhh--------------------hhhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            555555544444332  11000 0000000                    000000011112223445567888888888


Q ss_pred             HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      ++....+..+++.++..+...+...|++++|+..+++.. ..| +...|..+...+...|++++|++.|+++++.+|+++
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            887666666677888999999999999999999998842 334 577899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 009967          444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE  518 (521)
Q Consensus       444 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  518 (521)
                      .++..++.+|.+.|++++|+..|++.++.  .|.....+.             ........++..++..+..+.+
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~-------------~~~~~~~~~~~~l~~al~~~~~  300 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRG-------------EGGAMSENIWSTLRLALSMLGQ  300 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC-------------------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhh-------------hhHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999998763  222211111             2334456677777766665543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.3e-14  Score=129.03  Aligned_cols=269  Identities=13%  Similarity=0.034  Sum_probs=196.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 009967          177 YTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI  253 (521)
Q Consensus       177 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  253 (521)
                      .-.....+.+.|++++|+..|+++.+   .+..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence            34567788999999999999999865   357789999999999999999999999998753 22456677888899999


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009967          254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR  333 (521)
Q Consensus       254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~  333 (521)
                      |+++.|...+..+........ ...........                ..+.......+..+...+.+.+|...+.+..
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYA-HLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchH-HHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999887654311 11100000000                0011111112223344566778888888776


Q ss_pred             HCC-CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHH
Q 009967          334 ING-IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIG  410 (521)
Q Consensus       334 ~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~  410 (521)
                      ... -.++...+..+...+...|++++|...++++....+  .+...|..+..+|.+.|++++|.+.+++. ...| +..
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc--ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            632 234567788888889999999999999999875554  35678889999999999999999999874 2344 566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-----------HHHHHHHHHHhcCChHHHHHH
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVS-----------SYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      +|..+..+|...|++++|+..|++++++.|++..           .|..+..++...|+.+.+...
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8999999999999999999999999998887554           456677777777777655443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=5.1e-10  Score=103.43  Aligned_cols=259  Identities=11%  Similarity=-0.035  Sum_probs=164.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-----ChhHHH
Q 009967          211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNH------STLPCAIIAAANIAALGMGKSFHACAVKFLGKL-----DVFVGN  279 (521)
Q Consensus       211 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~  279 (521)
                      ....+...|++++|++++++.....  |+.      ..+..+..++...|+++.|...+..+.+.....     ....+.
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            3455666677777777777666532  321      234445566666677777777766665432111     123445


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHH
Q 009967          280 SLISFYAKCGSMEDSLLVFDKLTE-------RN----IVTWNAVICGYAQNGRGEEAIEFFERMRING----IRPNGVTL  344 (521)
Q Consensus       280 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~  344 (521)
                      .+...+...|++..+...+....+       +.    ...+..+...+...|+++.+...+.......    ......++
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  175 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  175 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence            556677778888887777766532       11    1245556677788888888888888776532    11223455


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-----CHHHHH
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LK----PEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-----GIGFWK  413 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~  413 (521)
                      ......+...++...+...+.......... ..    ...+..+...+...|++++|...++... ..|     ....+.
T Consensus       176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  255 (366)
T d1hz4a_         176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  255 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            555566777788887777776654322111 11    1245566677788888888888887743 111     233556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          414 ALLGGCQIHSNVELGEFAARRILAL------DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       414 ~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      .+..++...|++++|...+++++..      .|....++..++.+|.+.|++++|.+.+++..+
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6777888889999999888888752      344566788888889999999999988887654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.5e-10  Score=100.41  Aligned_cols=222  Identities=14%  Similarity=0.136  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967          206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY  285 (521)
Q Consensus       206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  285 (521)
                      .+|+.+...+.+.+.+++|++.++++.+.  .|+                                  +...|+....++
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~----------------------------------~~~a~~~r~~~l   87 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLL   87 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCC----------------------------------ChHHHHHHHHHH
Confidence            46777777888888899999999998884  466                                  555566666666


Q ss_pred             HhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967          286 AKCG-SMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       286 ~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                      ...| ++++|...++...+   .+..+|..+...+.+.|++++|+..++++.+.. +-+...|..+...+...|++++|.
T Consensus        88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al  166 (315)
T d2h6fa1          88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL  166 (315)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHH
Confidence            6654 47777777776653   445677777777777888888888888877743 234667777777777888888888


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhcCC------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGR------FKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAAR  433 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  433 (521)
                      ..++++.+..+  .+...|+.+..++.+.+.      +++|.+.+.+. ...| +...|..+...+.. ...+++.+.++
T Consensus       167 ~~~~~al~~~p--~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~  243 (315)
T d2h6fa1         167 QYVDQLLKEDV--RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLN  243 (315)
T ss_dssp             HHHHHHHHHCT--TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHH
T ss_pred             HHHHHHHHHCC--ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHH
Confidence            88888775554  345566666666655554      46677666653 2344 56667766665544 44677888888


Q ss_pred             HHHhcCCC--CchHHHHHHHHHHhc--CChHHHHHHHH
Q 009967          434 RILALDPE--DVSSYVMLSNALSVA--GKWDNVSNIRR  467 (521)
Q Consensus       434 ~~~~~~p~--~~~~~~~l~~~~~~~--g~~~~A~~~~~  467 (521)
                      ++.++.|+  ++..+..++.+|...  +..+.+...++
T Consensus       244 ~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~  281 (315)
T d2h6fa1         244 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN  281 (315)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            88887775  445566677776543  33333443333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=4.6e-10  Score=98.93  Aligned_cols=197  Identities=10%  Similarity=-0.051  Sum_probs=119.7

Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC
Q 009967          245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGR  321 (521)
Q Consensus       245 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~  321 (521)
                      .+..++.+.|+++.|...|+.+++..+. ++.+++.+..+|.+.|++++|...|+++.+   .+..++..+..++...|+
T Consensus        42 ~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          42 ERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            3344444455555555555555544433 677888888889999999999999988874   345678888888899999


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC----HHHHH
Q 009967          322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR----FKEAK  397 (521)
Q Consensus       322 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~  397 (521)
                      +++|...|++..+.. +.+......+..++...+..+.+..+..... ...  +....+. ++..+.....    .+.+.
T Consensus       121 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~  195 (259)
T d1xnfa_         121 DKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-KSD--KEQWGWN-IVEFYLGNISEQTLMERLK  195 (259)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HSC--CCSTHHH-HHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccc--hhhhhhh-HHHHHHHHHHHHHHHHHHH
Confidence            999999999887753 2344444444444555555555555555443 222  2222222 2222222222    22222


Q ss_pred             HHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          398 EFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       398 ~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                      ..+.... ..|+ ..+|..+...+...|++++|+..|++++..+|++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            2221110 1222 236667788889999999999999999999997655444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.9e-09  Score=97.29  Aligned_cols=258  Identities=9%  Similarity=-0.063  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhhcchHHHHHHHHHHHHc----CCCC---C
Q 009967          207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPN----HSTLPCAIIAAANIAALGMGKSFHACAVKF----LGKL---D  274 (521)
Q Consensus       207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~  274 (521)
                      ++..+..+|...|++++|...|++...... .++    ...+..+...+...|++..+...+......    +...   .
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  132 (366)
T d1hz4a_          53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  132 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence            344445555555555555555555443210 011    112233344445555555555555544321    1111   1


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE--------RNIVTWNAVICGYAQNGRGEEAIEFFERMRIN--GIRPNG---  341 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~---  341 (521)
                      ...+..+...+...|+++.+...+....+        .....+......+...+++..+...+.+....  ......   
T Consensus       133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~  212 (366)
T d1hz4a_         133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI  212 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence            22445566777788888888887776642        12234555666777888888888888775441  111111   


Q ss_pred             -HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCC-HH
Q 009967          342 -VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK--PEHYACMVDLLSRSGRFKEAKEFLYDL-------PFDPG-IG  410 (521)
Q Consensus       342 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~  410 (521)
                       ..+..+...+...|+++.|...++......+..+.  ...+..+..++...|++++|...+++.       ...|+ ..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  292 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR  292 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence             23455566678889999999999887533332222  234566888899999999999988864       22333 33


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CchHHHHHHHHHHhcCChHHHHH
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPE---------DVSSYVMLSNALSVAGKWDNVSN  464 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~  464 (521)
                      .+..+...+...|++++|++.+++++++.+.         ....+..+...+...++.+++.+
T Consensus       293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            6777888899999999999999999885432         22234455566666677666644

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=4.4e-09  Score=95.09  Aligned_cols=179  Identities=8%  Similarity=0.022  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 009967          291 MEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ  366 (521)
Q Consensus       291 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  366 (521)
                      .++|..+|++..+    .+...|...+..+...|+++.|..+|+++.+.........|...+..+.+.|+.+.|+++|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3555556655432    233455556666666666777777766666533222233566666666666667777777766


Q ss_pred             chHhCCCCCChhHHHHHHHH-HHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          367 AKLEDPGMLKPEHYACMVDL-LSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       367 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      +....+  .+...|...+.. +...|+.+.|..+|+.+.  .+.+...|..++..+...|+++.|..+|++++...|.++
T Consensus       160 al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            653333  222333333332 223466666666666532  133455666666666677777777777777776555433


Q ss_pred             ----hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          444 ----SSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       444 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                          ..|..++..-...|+.+.+..+++++.+
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                2566666666666777777777776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=8.6e-09  Score=93.12  Aligned_cols=187  Identities=10%  Similarity=0.050  Sum_probs=149.8

Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C-hhHHHHHHHHHHHcCChHHHHHHH
Q 009967          254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-N-IVTWNAVICGYAQNGRGEEAIEFF  329 (521)
Q Consensus       254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~A~~~~  329 (521)
                      +..+.+..+++.+++...+.+...+...+..+.+.|+++.|..+|+++.+  | + ...|...+..+.+.|+++.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            35678888999988766566777888889999999999999999999865  3 3 247889999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH-HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC----C
Q 009967          330 ERMRINGIRPNGVTLLGLLWA-CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL----P  404 (521)
Q Consensus       330 ~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~  404 (521)
                      +++.+.+ +.+...|...... +...|+.+.|..+|+.+....+  .++..+...++.+.+.|++++|..+|++.    +
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p--~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            9998864 2233444433332 3456899999999999986654  56778999999999999999999999983    1


Q ss_pred             CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967          405 FDPG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDV  443 (521)
Q Consensus       405 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  443 (521)
                      ..|+  ...|...+..-...|+.+.+..+++++.+..|...
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            2332  45899999988899999999999999999888653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=7.4e-10  Score=97.55  Aligned_cols=195  Identities=12%  Similarity=-0.026  Sum_probs=140.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC  351 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  351 (521)
                      ..++..+..+|.+.|++++|...|++..+   .++.+|+.+..+|...|++++|...|+++.+.. +-+..++..+..++
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            45677788999999999999999999874   566799999999999999999999999999853 22456788888999


Q ss_pred             HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHH----hcCCHH
Q 009967          352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGGCQ----IHSNVE  426 (521)
Q Consensus       352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~----~~g~~~  426 (521)
                      ...|++++|...|++..+..+  .+......+...+.+.+..+.+..+..... ..+....+. ++..+.    ..+..+
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME  192 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHH
Confidence            999999999999999986654  344444445555566665555544443321 122222222 122221    223344


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       427 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                      .+...+.......|....+|..++..|...|++++|...|++..+..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            45555555555667677789999999999999999999999987653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.7e-09  Score=97.94  Aligned_cols=195  Identities=10%  Similarity=0.040  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967          275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNG-RGEEAIEFFERMRINGIRPNGVTLLGLLWA  350 (521)
Q Consensus       275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  350 (521)
                      ...++.+..++.+.+.+++|+++++++.+   .+...|+....++...| ++++|+..++...+.. +-+..+|..+...
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            34566677788899999999999999986   34568888888888876 5899999999988753 2356689999999


Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC----
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSN----  424 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~----  424 (521)
                      +...|++++|...++++.+..+  .+...|..+..++...|++++|++.+++.. ..| +...|+.+...+...+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp--~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhhh--cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence            9999999999999999986665  567789999999999999999999999853 344 57788887777665554    


Q ss_pred             --HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967          425 --VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG  473 (521)
Q Consensus       425 --~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  473 (521)
                        +++|+..+.++++.+|++..+|..++..+...| .+++.+.++...+..
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~  249 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQ  249 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHT
T ss_pred             hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhC
Confidence              689999999999999999999999988766544 688888888876643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=3.4e-10  Score=104.04  Aligned_cols=228  Identities=11%  Similarity=-0.035  Sum_probs=158.0

Q ss_pred             cCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhc--chHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHH
Q 009967          218 TGRNEEAVNLFIEMLREGLVP-NHSTLPCAIIAAANIA--ALGMGKSFHACAVKFLGKLDVFVG-NSLISFYAKCGSMED  293 (521)
Q Consensus       218 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~  293 (521)
                      .|++++|+..++...+.+  | +...+.....++...+  +++.+...+..+.+..++ +...+ ......+...+.+++
T Consensus        86 ~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          86 AALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence            344666777777766643  4 3334444444554444  366777777777766544 34433 445567778899999


Q ss_pred             HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHh
Q 009967          294 SLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE  370 (521)
Q Consensus       294 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  370 (521)
                      |...++.+.+   .+...|+.+..++.+.|++++|...++.....  .|+.   ..+...+...+..+.+...+......
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence            9999999886   34568888889999999988887666554432  1222   12223344556666777777776544


Q ss_pred             CCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 009967          371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM  448 (521)
Q Consensus       371 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  448 (521)
                      .+  ++...+..++..+...|+.++|...+.+.. ..|+ ..++..++..+...|++++|++.++++++++|.+...|..
T Consensus       238 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~  315 (334)
T d1dcea1         238 RA--EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  315 (334)
T ss_dssp             CC--CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             Cc--chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence            44  344456667778888899999999988754 3443 4477888888999999999999999999999998888888


Q ss_pred             HHHHHHh
Q 009967          449 LSNALSV  455 (521)
Q Consensus       449 l~~~~~~  455 (521)
                      +...+.-
T Consensus       316 L~~~~~~  322 (334)
T d1dcea1         316 LRSKFLL  322 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhH
Confidence            8777764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=2e-10  Score=105.62  Aligned_cols=252  Identities=10%  Similarity=-0.033  Sum_probs=179.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH-H---HHHH-------HHHhhcchHHHHHHHHHHHHcCCCCChhHHH
Q 009967          211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL-P---CAII-------AAANIAALGMGKSFHACAVKFLGKLDVFVGN  279 (521)
Q Consensus       211 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~---~ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  279 (521)
                      ++....+.+..++|+++++.....  .|+..+. +   .++.       .+...|.++.+..+++.+.+..++ +...+.
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~  111 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH  111 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHH
Confidence            333333444568999999998874  4776543 2   1222       233455678889999998887655 667777


Q ss_pred             HHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967          280 SLISFYAKCG--SMEDSLLVFDKLTE---RNIVTWNA-VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH  353 (521)
Q Consensus       280 ~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  353 (521)
                      .+..++...+  ++++|...+.++.+   ++...+.. ....+...+.+++|+..++.+.... +-+...|..+..++..
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            7777776655  58899999998864   34555543 4466677899999999999888754 2356688888888889


Q ss_pred             hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009967          354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFA  431 (521)
Q Consensus       354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  431 (521)
                      .|++++|...++......   |.   ...+...+...+..+++...+... .. +++...+..++..+...|+.++|...
T Consensus       191 ~~~~~~A~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  264 (334)
T d1dcea1         191 LHPQPDSGPQGRLPENVL---LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE  264 (334)
T ss_dssp             HSCCCCSSSCCSSCHHHH---HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhHHhH---HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence            998887766665543221   11   122334455566667777666652 11 33444556667777788999999999


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       432 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      +.+....+|.+..++..++.++.+.|++++|..++++..+.
T Consensus       265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.5e-08  Score=72.52  Aligned_cols=104  Identities=13%  Similarity=0.019  Sum_probs=70.2

Q ss_pred             HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCH
Q 009967          348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNV  425 (521)
Q Consensus       348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~  425 (521)
                      ...+...|++++|...|+++....+  .++..|..+..+|...|++++|+..+++.. . +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC--cchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            3456667777777777777765554  445567777777777777777777776632 2 34556777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967          426 ELGEFAARRILALDPEDVSSYVMLSNAL  453 (521)
Q Consensus       426 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~  453 (521)
                      ++|+..|+++++.+|+++.++..+..+-
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            7777777777777777777766666543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.4e-07  Score=70.92  Aligned_cols=91  Identities=9%  Similarity=0.054  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 009967          382 CMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW  459 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  459 (521)
                      .-...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..++++++++|+++..|..++.++...|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            34677889999999999999852 2 456778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 009967          460 DNVSNIRREMKEK  472 (521)
Q Consensus       460 ~~A~~~~~~m~~~  472 (521)
                      ++|+..+++..+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.8e-07  Score=75.37  Aligned_cols=141  Identities=12%  Similarity=-0.022  Sum_probs=99.6

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967          282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY  361 (521)
Q Consensus       282 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  361 (521)
                      ...+...|+++.|.+.|.++.+++..+|..+..+|...|++++|++.|++..+.. +-+...|..+..++...|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            4556778888999888888888888888888888888889999998888888753 234567788888888888888888


Q ss_pred             HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967          362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDP  440 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  440 (521)
                      ..|++.....+..+.. .       |...|.           ..+.+ ..++..+..++...|++++|.+.++++++..|
T Consensus        91 ~~~~kAl~~~~~n~~~-~-------~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLI-D-------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHTTTTCSEE-E-------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCccCchH-H-------HHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            8888875322211110 0       000000           00111 23455677778889999999999999999888


Q ss_pred             CC
Q 009967          441 ED  442 (521)
Q Consensus       441 ~~  442 (521)
                      ..
T Consensus       152 ~~  153 (192)
T d1hh8a_         152 EP  153 (192)
T ss_dssp             SG
T ss_pred             Cc
Confidence            54

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=7.6e-08  Score=80.58  Aligned_cols=118  Identities=11%  Similarity=-0.075  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 009967          339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALL  416 (521)
Q Consensus       339 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~  416 (521)
                      |+...+......+...|++++|...|+++....+  .++..|..+..+|.+.|++++|+..+++. ...| +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            6667777777778888888888888887765554  45667777888888888888888887763 3445 355777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      .++...|++++|+..|+++++++|++...+...+..+...++
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  121 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  121 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            778888888888888888877777655544444444444333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.6e-07  Score=73.90  Aligned_cols=117  Identities=10%  Similarity=-0.019  Sum_probs=95.4

Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCC
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSN  424 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~  424 (521)
                      -...|.+.|++++|...|+++....+  .+...|..+..+|...|++++|.+.|++. ...| +..+|..++.++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            34567889999999999999886665  46778899999999999999999999874 2344 56799999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHH--hcCChHHHHHH
Q 009967          425 VELGEFAARRILALDPEDVSSYVMLSNALS--VAGKWDNVSNI  465 (521)
Q Consensus       425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~  465 (521)
                      +++|+..+++++.++|+++.++..+..+..  ..+.+++|...
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999998888776643  44556666554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=5.4e-08  Score=81.56  Aligned_cols=97  Identities=10%  Similarity=-0.094  Sum_probs=75.7

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967          304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM  383 (521)
Q Consensus       304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  383 (521)
                      |+...+......+.+.|++++|+..|++..... +-+...|..+..+|...|++++|...|+++.+..+  -++.+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--CcHHHHHHH
Confidence            455666677888888899999999998887753 34566788888888889999999999988863332  346678888


Q ss_pred             HHHHHhcCCHHHHHHHHhhC
Q 009967          384 VDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~  403 (521)
                      ..+|.+.|++++|...|++.
T Consensus        79 g~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            88899999999998888763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.5e-06  Score=77.16  Aligned_cols=26  Identities=12%  Similarity=-0.027  Sum_probs=15.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967          208 WNAMIGGYSQTGRNEEAVNLFIEMLR  233 (521)
Q Consensus       208 ~~~l~~~~~~~~~~~~a~~~~~~m~~  233 (521)
                      |......|...|++++|.+.|.+...
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~   65 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAAD   65 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            33445666666777777766666544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.63  E-value=1e-07  Score=71.05  Aligned_cols=90  Identities=14%  Similarity=0.041  Sum_probs=80.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      ..+...+.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            346777889999999999998853 345 577999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 009967          459 WDNVSNIRREMK  470 (521)
Q Consensus       459 ~~~A~~~~~~m~  470 (521)
                      +++|.+.+++..
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999853

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.3e-07  Score=76.71  Aligned_cols=88  Identities=17%  Similarity=0.051  Sum_probs=82.3

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 009967          384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS  463 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  463 (521)
                      ...+...|+++.|++.|.++. +|+..+|..+..++...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence            566788999999999999986 7888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 009967          464 NIRREMKEK  472 (521)
Q Consensus       464 ~~~~~m~~~  472 (521)
                      ..|++..+.
T Consensus        91 ~~~~kAl~~   99 (192)
T d1hh8a_          91 KDLKEALIQ   99 (192)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.2e-07  Score=69.20  Aligned_cols=106  Identities=13%  Similarity=-0.019  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC---HHHHHHHHhhCC-CCCCH---HHHHHHHH
Q 009967          345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR---FKEAKEFLYDLP-FDPGI---GFWKALLG  417 (521)
Q Consensus       345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~~~---~~~~~l~~  417 (521)
                      ..++..+...+++++|++.|++.....+  .++.++..+..++.+.++   +++|+.+++++. ..|+.   .+|..+..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p--~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            3567778889999999999999986665  567788889999987555   456899998853 34443   26778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967          418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA  452 (521)
Q Consensus       418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  452 (521)
                      +|...|++++|++.|+++++++|++..+.......
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            99999999999999999999999988876665544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.2e-07  Score=72.09  Aligned_cols=92  Identities=10%  Similarity=0.041  Sum_probs=82.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK  458 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  458 (521)
                      ......|.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..|+++++++|+++.+|..++.++...|+
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            344567889999999999999843 3 44677999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 009967          459 WDNVSNIRREMKEK  472 (521)
Q Consensus       459 ~~~A~~~~~~m~~~  472 (521)
                      +++|...+++..+.
T Consensus        94 ~~eA~~~~~~a~~~  107 (159)
T d1a17a_          94 FRAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=7.8e-07  Score=79.07  Aligned_cols=157  Identities=7%  Similarity=-0.122  Sum_probs=76.1

Q ss_pred             HHHHHhhcchHHHHHHHHHHHHcC----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHH
Q 009967          247 IIAAANIAALGMGKSFHACAVKFL----GKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAV  312 (521)
Q Consensus       247 l~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l  312 (521)
                      ...|...++++.|...|..+.+..    .++ -..+|..+..+|.+.|++++|...+++..+     .+    ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            345666666777766666655431    111 123455566666666666666666665442     11    1234444


Q ss_pred             HHHHHH-cCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-----hHHH
Q 009967          313 ICGYAQ-NGRGEEAIEFFERMRI----NGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-----EHYA  381 (521)
Q Consensus       313 i~~~~~-~~~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~  381 (521)
                      ...|.. .|++++|.+.+++..+    .+..+. ..++..+...+...|++++|...|+++.......+..     ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            444433 3666666666655432    111111 1234455555566666666666666554322211110     1123


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhC
Q 009967          382 CMVDLLSRSGRFKEAKEFLYDL  403 (521)
Q Consensus       382 ~l~~~~~~~g~~~~A~~~~~~~  403 (521)
                      ..+.++...|+++.|...+++.
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHhccHHHHHHHHHHH
Confidence            3334444555566665555553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.55  E-value=3.8e-05  Score=66.67  Aligned_cols=225  Identities=9%  Similarity=-0.068  Sum_probs=135.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967          204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS  283 (521)
Q Consensus       204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  283 (521)
                      |+..+..+...+...+++++|+++|++..+.|                                      +...+..|..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--------------------------------------~~~A~~~Lg~   42 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV   42 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence            34556666667777777777777777776654                                      2223333333


Q ss_pred             HHHh----cCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 009967          284 FYAK----CGSMEDSLLVFDKLTER-NIVTWNAVICGYAQ----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN--  352 (521)
Q Consensus       284 ~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--  352 (521)
                      +|..    ..+...|...+....++ +......+...+..    .++.+.|...++...+.|.   ......+...+.  
T Consensus        43 ~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~  119 (265)
T d1ouva_          43 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDG  119 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHC
T ss_pred             HHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCC
Confidence            3333    33555555555554432 23333333333332    3456777777777766552   122222222222  


Q ss_pred             --hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 009967          353 --HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----H  422 (521)
Q Consensus       353 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~  422 (521)
                        .......+...+.... ..   .+...+..|...|..    ..+...+...++......+..+...+...+..    .
T Consensus       120 ~~~~~~~~~a~~~~~~~~-~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~  195 (265)
T d1ouva_         120 KVVTRDFKKAVEYFTKAC-DL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT  195 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             CcccchhHHHHHHhhhhh-cc---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccc
Confidence              2344566666666553 22   345556666666664    34566666666654434566666666666554    5


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~  475 (521)
                      .+++.|+..|+++.+.+  ++..+..|+.+|.+    ..+.++|.+.|++..+.|..
T Consensus       196 ~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         196 KNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             cchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            68999999999998875  67788889998886    44789999999998887754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.2e-06  Score=69.11  Aligned_cols=84  Identities=12%  Similarity=-0.014  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      +|..+..+|.+.|++++|+..++.. ...| ++.+|..+..++...|++++|+..|+++++++|+++.+...+..+..+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            5777889999999999999999874 3344 6779999999999999999999999999999999999999988887766


Q ss_pred             CChHHH
Q 009967          457 GKWDNV  462 (521)
Q Consensus       457 g~~~~A  462 (521)
                      +...+.
T Consensus       144 ~~~~~~  149 (170)
T d1p5qa1         144 RRQLAR  149 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.7e-06  Score=68.56  Aligned_cols=111  Identities=5%  Similarity=-0.136  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009967          343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH  422 (521)
Q Consensus       343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~  422 (521)
                      .+......+...|++++|...|+++....+..+.....            .......       ....+|..+..+|.+.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------~~~~~~~-------~~~~~~~nla~~y~k~   75 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------EAQKAQA-------LRLASHLNLAMCHLKL   75 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------HHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------HHhhhch-------hHHHHHHHHHHHHHhh
Confidence            34455556777888888888887776443322221100            0000000       0123567788889999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      |++++|+..+++++.++|+++.++..++.+|...|++++|+..|++..+.
T Consensus        76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=6.3e-07  Score=67.53  Aligned_cols=92  Identities=5%  Similarity=-0.033  Sum_probs=77.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC--chHHHHHHHHH
Q 009967          381 ACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH---SNVELGEFAARRILALDPED--VSSYVMLSNAL  453 (521)
Q Consensus       381 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~  453 (521)
                      ..++..+...+++++|++.|++.. . +.+..++..+..++.+.   +++++|+.+|++++..+|++  +.++..++.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            457788889999999999999843 3 55677888999998764   46667999999999988754  45899999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 009967          454 SVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       454 ~~~g~~~~A~~~~~~m~~~  472 (521)
                      .+.|++++|+++|+++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            9999999999999998864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.40  E-value=4.1e-06  Score=66.10  Aligned_cols=83  Identities=14%  Similarity=0.094  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEE
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH  490 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~  490 (521)
                      ++..+..+|.+.|++++|++.++++++.+|++..+|..++.++...|++++|+..|++..+.                  
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------------------  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL------------------  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence            55667777888888888888888888888888888888888888888888888888886643                  


Q ss_pred             EEecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 009967          491 VFVTGDRNHHMNDEIYAVLRSCTEQIREF  519 (521)
Q Consensus       491 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~  519 (521)
                              +|...++...++.+...+++.
T Consensus       131 --------~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1         131 --------NPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             --------STTCHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCCHHHHHHHHHHHHHHHHH
Confidence                    356667777777776666553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.33  E-value=6.4e-06  Score=66.14  Aligned_cols=93  Identities=8%  Similarity=0.005  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA  456 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  456 (521)
                      +|..+..+|.+.|++++|+..++... . +.+..+|..+..++...|++++|+..|+++++++|+++.+...+..+..+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            46678889999999999999998742 2 556779999999999999999999999999999999999999888887776


Q ss_pred             CChH-HHHHHHHHHHh
Q 009967          457 GKWD-NVSNIRREMKE  471 (521)
Q Consensus       457 g~~~-~A~~~~~~m~~  471 (521)
                      +... ...+++..|-+
T Consensus       146 ~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         146 KEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHh
Confidence            6554 35566665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4e-06  Score=63.83  Aligned_cols=92  Identities=7%  Similarity=0.043  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------HHHHHH
Q 009967          380 YACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS-------SYVMLS  450 (521)
Q Consensus       380 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~  450 (521)
                      +..+...+.+.|++++|++.|++.. . +.+...+..+..+|...|++++|++.++++++++|+++.       +|..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            4556777888888888888887742 2 445778888889999999999999999999998887654       556677


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 009967          451 NALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       451 ~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      ..+...+++++|+..+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            777888899999999988653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=4.1e-06  Score=67.43  Aligned_cols=64  Identities=9%  Similarity=0.009  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ...+..+..++...|++++|+..++++++++|+++.+|..++.+|.+.|++++|++.|++..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4467777888899999999999999999999999999999999999999999999999987753

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.26  E-value=0.001  Score=58.87  Aligned_cols=135  Identities=11%  Similarity=0.048  Sum_probs=67.1

Q ss_pred             CChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 009967          106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL  185 (521)
Q Consensus       106 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~  185 (521)
                      ||..-...+...|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+++.+.  .+..+|..+...+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~   80 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV   80 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence            5555555666667777777777777764332         556666777777777777766655  34456666666666


Q ss_pred             cCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 009967          186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI  253 (521)
Q Consensus       186 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  253 (521)
                      +.....-+.-+ ......+......++..|...|.++....+++..... -.++...++.++..+++.
T Consensus        81 ~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          81 DGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            66555443221 1111224444455666666677777766666655432 133444455555555543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.22  E-value=0.0012  Score=58.34  Aligned_cols=272  Identities=8%  Similarity=0.033  Sum_probs=165.8

Q ss_pred             hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHH
Q 009967           48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG  127 (521)
Q Consensus        48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  127 (521)
                      +.+.|-+.|.++.|..++..+.     -|..++..+.+.++++.|.+.+.+.      -+..+|..+...|.+......+
T Consensus        20 i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la   88 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA   88 (336)
T ss_dssp             ---------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH
Confidence            6777888899999999997655     5778888888899999988887654      2556788888888776655443


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC-C
Q 009967          128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPH-R  203 (521)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~  203 (521)
                           .+.......+......++..|-..|.+++...+++....   .+...++.++..|++.+. ++..+.+..... -
T Consensus        89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y  162 (336)
T d1b89a_          89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSRV  162 (336)
T ss_dssp             -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTS
T ss_pred             -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhccccC
Confidence                 222233345566667788889999999999999987643   556678888888888753 455555554322 1


Q ss_pred             ----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 009967          204 ----------NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL  273 (521)
Q Consensus       204 ----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  273 (521)
                                ....|..++..|.+.|+++.|..++   ..+  .++..-....+..+.+..+.+...++.....+.    
T Consensus       163 ~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----  233 (336)
T d1b89a_         163 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----  233 (336)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----
Confidence                      1223556666777777777766553   332  244444555666677777776666666655543    


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH  353 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  353 (521)
                      ++...+.++......-+..+..+.++                  +.++.......++.....+   +....+.+...|..
T Consensus       234 ~p~~i~~lL~~v~~~~d~~r~V~~~~------------------k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie  292 (336)
T d1b89a_         234 KPLLLNDLLMVLSPRLDHTRAVNYFS------------------KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFIT  292 (336)
T ss_dssp             CGGGHHHHHHHHGGGCCHHHHHHHHH------------------HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhccCCCHHHHHHHHH------------------hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhC
Confidence            23444555555555555555554443                  4455555555665544433   34566667777777


Q ss_pred             hccHHHHHHHHHH
Q 009967          354 TGLVEKGYSYFSQ  366 (521)
Q Consensus       354 ~~~~~~a~~~~~~  366 (521)
                      .++++.-++..+.
T Consensus       293 ~~d~~~l~~~i~~  305 (336)
T d1b89a_         293 EEDYQALRTSIDA  305 (336)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHH
Confidence            7776655555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.19  E-value=4.4e-05  Score=61.04  Aligned_cols=62  Identities=10%  Similarity=0.006  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      .|..+..+|...|++++|+..+++++.++|+++.+|..++.++...|++++|...|+++.+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56667788999999999999999999999999999999999999999999999999998754

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.16  E-value=5.5e-06  Score=66.64  Aligned_cols=133  Identities=11%  Similarity=0.041  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL  387 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (521)
                      .+......+...|++++|+..|+++.+.            .............      . ...+  .....|..+..+|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~-~~~~--~~~~~~~nla~~~   87 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A-KLQP--VALSCVLNIGACK   87 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G-GGHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H-HhCh--hhHHHHHHHHHHH
Confidence            3455566677888888888888776531            0000000111100      0 0011  2344677889999


Q ss_pred             HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967          388 SRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN  461 (521)
Q Consensus       388 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  461 (521)
                      .+.|++++|+..+++. ...| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+..+.....+
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999884 3444 567999999999999999999999999999999999998888887665544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.6e-07  Score=87.96  Aligned_cols=91  Identities=10%  Similarity=-0.113  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967          379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG  457 (521)
Q Consensus       379 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  457 (521)
                      .+..+...+.+.|+.++|...++... .++ ...+..+...+...|++++|+..|+++++++|++...|+.++..+...|
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             ---------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            34444445555555555544433321 111 1234444445555555555555555555555555555555555555555


Q ss_pred             ChHHHHHHHHHHH
Q 009967          458 KWDNVSNIRREMK  470 (521)
Q Consensus       458 ~~~~A~~~~~~m~  470 (521)
                      +..+|+..|.+..
T Consensus       201 ~~~~A~~~y~ral  213 (497)
T d1ya0a1         201 DHLTTIFYYCRSI  213 (497)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.15  E-value=0.00061  Score=58.69  Aligned_cols=227  Identities=12%  Similarity=-0.047  Sum_probs=109.1

Q ss_pred             chhHHHHHHHHHcCCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009967          174 VVSYTTMICGLLKRERFEDALKLFQEMPH-RNVVSWNAMIGGYSQ----TGRNEEAVNLFIEMLREGLVPNHSTLPCAII  248 (521)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  248 (521)
                      +..+..|...+.+.+++++|++.|++..+ .+..++..|...|..    ..++..|...+......+.   ......+..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~~   78 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhcccc
Confidence            44555566666667777777777776643 356666667777765    5577788888877766541   122222222


Q ss_pred             HHHh----hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 009967          249 AAAN----IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE  324 (521)
Q Consensus       249 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  324 (521)
                      .+..    ..+.+.+...+....+.|..   .....+...+....                           ........
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~---------------------------~~~~~~~~  128 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK---------------------------VVTRDFKK  128 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS---------------------------SSCCCHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC---------------------------cccchhHH
Confidence            2221    23445555555555554422   11222222222100                           01122333


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHHH
Q 009967          325 AIEFFERMRINGIRPNGVTLLGLLWACNH----TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKEA  396 (521)
Q Consensus       325 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  396 (521)
                      +...+......   .+...+..+...+..    ..+...+..+++... ..+   ++.....+...|..    ..++++|
T Consensus       129 a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~-~~g---~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         129 AVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-DLK---DSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccc-ccc---ccccccchhhhcccCcccccchhhh
Confidence            33333333332   133333333333332    233444444444442 222   33333344444433    3456666


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 009967          397 KEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDP  440 (521)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p  440 (521)
                      ...|++....-++..+..|...|..    ..|.++|.+.|+++.+.++
T Consensus       202 ~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         202 LARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            6666553323344455555555543    3367777777777777664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=1.1e-05  Score=65.20  Aligned_cols=118  Identities=15%  Similarity=0.077  Sum_probs=82.0

Q ss_pred             HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009967          349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG  428 (521)
Q Consensus       349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  428 (521)
                      ......|++++|.+.|.+.....+..+-...         ..+.+-  ...-..+. ......+..++..+...|++++|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~--~~~r~~l~-~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFV--EPFATALV-EDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTH--HHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHH--HHHHHHHH-HHHHHHHHHHHHHHHHCCCchHH
Confidence            4566778888888888877643322211100         001110  00000110 11234677788899999999999


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCC
Q 009967          429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-----EKGMTRVP  478 (521)
Q Consensus       429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~  478 (521)
                      +..++++++.+|.+...|..++.+|.+.|++++|++.|+++.     +.|+.|.+
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            999999999999999999999999999999999999999974     35777654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.07  E-value=7.6e-05  Score=58.49  Aligned_cols=123  Identities=8%  Similarity=-0.001  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967          308 TWNAVICGYAQNGRGEEAIEFFERMRINGI----RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM  383 (521)
Q Consensus       308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  383 (521)
                      .+......+.+.|++.+|...|.+....-.    .++....                 .....        ....+|..+
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~~~~~--------~~~~~~~Nl   73 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------DKKKN--------IEISCNLNL   73 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------HHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------Hhhhh--------HHHHHHhhH
Confidence            344455667778888888888887765210    0111110                 00000        112367778


Q ss_pred             HHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967          384 VDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV  455 (521)
Q Consensus       384 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  455 (521)
                      ..+|.+.|++++|++.+++. .. +.+..+|..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus        74 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            89999999999999999884 33 44678999999999999999999999999999999999888777666543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.05  E-value=2.5e-05  Score=57.60  Aligned_cols=84  Identities=14%  Similarity=-0.001  Sum_probs=36.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC
Q 009967          314 CGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR  392 (521)
Q Consensus       314 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  392 (521)
                      ..+.+.|++++|...|++.....  | +..+|..+..++...|++++|...|+++.+..+  .+...+..+..+|...|+
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHHHHHCCC
Confidence            33444444444444444444422  2 233444444444444444444444444443332  223344444444444444


Q ss_pred             HHHHHHHHh
Q 009967          393 FKEAKEFLY  401 (521)
Q Consensus       393 ~~~A~~~~~  401 (521)
                      +++|.+.++
T Consensus       100 ~~~A~~~l~  108 (112)
T d1hxia_         100 ANAALASLR  108 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=3.5e-05  Score=59.80  Aligned_cols=128  Identities=14%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh----------ccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT----------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVD  385 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  385 (521)
                      |-+.+.+++|...|+...+.. +.+..++..+..++...          +.+++|...|+++.+..+  .+..+|..+..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P--~~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hhhHHHhhHHH
Confidence            344556677777777766643 23444555555555432          334556666666554443  33445555555


Q ss_pred             HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 009967          386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI  465 (521)
Q Consensus       386 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  465 (521)
                      +|...|++            .++...         ..++++.|.+.|+++++++|++...+..|...       ..|.++
T Consensus        84 ~y~~~g~~------------~~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~  135 (145)
T d1zu2a1          84 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQL  135 (145)
T ss_dssp             HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHH
T ss_pred             HHHHcccc------------hhhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHH
Confidence            55444322            111111         12346889999999999999888777777666       466677


Q ss_pred             HHHHHhCCC
Q 009967          466 RREMKEKGM  474 (521)
Q Consensus       466 ~~~m~~~g~  474 (521)
                      +.+..+.|+
T Consensus       136 ~~e~~k~~~  144 (145)
T d1zu2a1         136 HAEAYKQGL  144 (145)
T ss_dssp             HHHHHHSSS
T ss_pred             HHHHHHHhc
Confidence            777766664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.0001  Score=55.67  Aligned_cols=99  Identities=9%  Similarity=0.003  Sum_probs=53.6

Q ss_pred             HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C---CCC-----HHHHHHHHH
Q 009967          347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F---DPG-----IGFWKALLG  417 (521)
Q Consensus       347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~-----~~~~~~l~~  417 (521)
                      +...+...|++++|...|+++....+  .+...+..+..+|.+.|++++|++.+++.. +   .+.     ..+|..+..
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34445555555555555555543333  234445555555555555555555554421 0   111     124555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 009967          418 GCQIHSNVELGEFAARRILALDPEDVSSYVM  448 (521)
Q Consensus       418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  448 (521)
                      .+...+++++|+..|++.+...| ++.....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~  117 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKK  117 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCC-CHHHHHH
Confidence            67777888888888888887766 4444333

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00018  Score=50.86  Aligned_cols=75  Identities=11%  Similarity=0.094  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 009967          378 EHYACMVDLLSRSGRFKEAKEFLYDLP--------FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM  448 (521)
Q Consensus       378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  448 (521)
                      ...-.+...+.+.|++++|...|++..        ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            334456666677777777776665521        1222 4578889999999999999999999999999999998888


Q ss_pred             HHHH
Q 009967          449 LSNA  452 (521)
Q Consensus       449 l~~~  452 (521)
                      +...
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.7e-06  Score=80.68  Aligned_cols=113  Identities=10%  Similarity=-0.054  Sum_probs=60.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI-VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWAC  351 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~  351 (521)
                      +...+..+...+.+.|+.+.|...+....+++. .++..+...+...|++++|...|++..+.  .|+ ...|+.+...+
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA  196 (497)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            444556666667777777777766665544332 35666777777788888888888887764  343 45777777777


Q ss_pred             HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc
Q 009967          352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS  390 (521)
Q Consensus       352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  390 (521)
                      ...|+..+|...|.+.....+  |-+.++..|...+.+.
T Consensus       197 ~~~~~~~~A~~~y~ral~~~~--~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVKF--PFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSSB--CCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHh
Confidence            788888888888877753333  5566677777766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.64  E-value=0.00038  Score=54.54  Aligned_cols=61  Identities=13%  Similarity=-0.009  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------C----CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDP-------E----DVSSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      .|+.+..+|...|++++|...+++++++.|       +    ...++..++.+|...|++++|+..|++..+
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555556666666666666666655322       1    123566778888888888888888887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.62  E-value=0.00017  Score=62.02  Aligned_cols=129  Identities=11%  Similarity=-0.088  Sum_probs=86.7

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                      ..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+..+  -+...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P--~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP--EYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhccccHH
Confidence            345788999999999988864 34567888888889999999999999998875543  234455555555555555544


Q ss_pred             HHHHHhh--CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          396 AKEFLYD--LPFDPGI-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       396 A~~~~~~--~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                      +..-...  ...+|+. ..+...+..+...|+.++|.++++++.+..|..+..++
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            4333222  1113322 23344455577889999999999999998887665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00028  Score=49.84  Aligned_cols=63  Identities=19%  Similarity=0.024  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967          410 GFWKALLGGCQIHSNVELGEFAARRILALDPED-------VSSYVMLSNALSVAGKWDNVSNIRREMKEK  472 (521)
Q Consensus       410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  472 (521)
                      ..+-.+...+...|+++.|+..|++++++.|.+       ..++..++.++.+.|++++|+..++++.+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            344567788999999999999999999865442       467999999999999999999999998764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.53  E-value=5.6e-05  Score=58.57  Aligned_cols=98  Identities=12%  Similarity=0.138  Sum_probs=71.2

Q ss_pred             HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009967          351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF  430 (521)
Q Consensus       351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  430 (521)
                      |.+.+.+++|...|+.+.+..|  .++..+..+..+|...+++..+.+                      ..+.+++|+.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P--~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~   62 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT   62 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence            4556677777777777765554  455566666666665554443333                      2245678999


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHhcCC-----------hHHHHHHHHHHHhC
Q 009967          431 AARRILALDPEDVSSYVMLSNALSVAGK-----------WDNVSNIRREMKEK  472 (521)
Q Consensus       431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~  472 (521)
                      .|+++++++|+++.+|..++.+|...|+           +++|.+.|++..+.
T Consensus        63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            9999999999999999999999987654           67888888887643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.27  E-value=0.0019  Score=51.57  Aligned_cols=72  Identities=13%  Similarity=0.017  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchH----hCCCCCChhH
Q 009967          307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL----EDPGMLKPEH  379 (521)
Q Consensus       307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~  379 (521)
                      ..+..+...+...|++++|...++++.... +-+...|..++.++...|+.++|.+.|+++..    ..|+.|.+.+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            345566666777777777777777776642 23555677777777777777777777776532    2466666543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.97  E-value=0.00039  Score=59.61  Aligned_cols=30  Identities=17%  Similarity=0.148  Sum_probs=17.3

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 009967          274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE  303 (521)
Q Consensus       274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  303 (521)
                      +...+..+...++..|++++|.+.|+...+
T Consensus        29 d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1          29 DASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            555555556666666666666655555543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.15  Score=46.93  Aligned_cols=51  Identities=10%  Similarity=-0.075  Sum_probs=24.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                      ....+++..+...+..+.......+...+-+++++...|+.++|...|...
T Consensus       295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~  345 (450)
T d1qsaa1         295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL  345 (450)
T ss_dssp             HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            334455555555555443222223334444555555555555555555554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.80  E-value=0.0026  Score=49.44  Aligned_cols=31  Identities=3%  Similarity=-0.220  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967          411 FWKALLGGCQIHSNVELGEFAARRILALDPE  441 (521)
Q Consensus       411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  441 (521)
                      .+..+..+|...|++++|+..|++++++.|.
T Consensus       102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1         102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4566677788888888888888888886543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0058  Score=44.34  Aligned_cols=65  Identities=12%  Similarity=-0.003  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967          407 PGIGFWKALLGGCQIH---SNVELGEFAARRILALDPEDV-SSYVMLSNALSVAGKWDNVSNIRREMKE  471 (521)
Q Consensus       407 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~  471 (521)
                      +.+.+-..++.++.+.   .+.++|+.+++++...+|.+. ..+..|+.+|.+.|++++|.++++.+.+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3334444444444433   345566666666666666543 5666666666677777777776666654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.30  E-value=0.039  Score=41.04  Aligned_cols=82  Identities=7%  Similarity=-0.080  Sum_probs=50.9

Q ss_pred             CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHH
Q 009967          392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVS  463 (521)
Q Consensus       392 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~  463 (521)
                      +.++|.+.+++....-++.....|...|..    ..|.++|.+.|+++.+.+  ++.....|+..|..    ..+.++|.
T Consensus        38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~  115 (133)
T d1klxa_          38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV  115 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence            444444444443212233333333333332    347788888888887754  56677778888776    46788888


Q ss_pred             HHHHHHHhCCCc
Q 009967          464 NIRREMKEKGMT  475 (521)
Q Consensus       464 ~~~~~m~~~g~~  475 (521)
                      ++|++..+.|..
T Consensus       116 ~~~~~Aa~~G~~  127 (133)
T d1klxa_         116 KTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCH
Confidence            888888877753

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.32  E-value=0.29  Score=34.84  Aligned_cols=141  Identities=13%  Similarity=0.011  Sum_probs=99.8

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967          316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE  395 (521)
Q Consensus       316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  395 (521)
                      +.-.|..++..+++.+....   .+..-|+.++--....-+-+...+.++.+-+-..+.|-. -...++.++...+    
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n----   83 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINN----   83 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTT----
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhc----
Confidence            45578888888888887764   366677777766666677777777777764333322211 1233444444443    


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967          396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT  475 (521)
Q Consensus       396 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  475 (521)
                                 .+...++..+.....+|+-+.-.++++.+...+..+|..+..++.+|.+.|...++-+++.+..+.|+.
T Consensus        84 -----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          84 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence                       233345555667788899999999999987766669999999999999999999999999999999874

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.15  E-value=0.15  Score=36.31  Aligned_cols=140  Identities=11%  Similarity=-0.061  Sum_probs=89.1

Q ss_pred             HcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-CCchhHHHHHHHHHcCCCHHHHHHH
Q 009967          118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDALKL  196 (521)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~  196 (521)
                      +...|..++..++..+..++.   +..-||-.+.-....-+-+-..++++.+-+ -|.          ...+++......
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl----------s~C~Nlk~vv~C   78 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVEC   78 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCc----------hhhhcHHHHHHH
Confidence            445677777777777777643   344455555555555565666666655533 111          123333333333


Q ss_pred             HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967          197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK  272 (521)
Q Consensus       197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  272 (521)
                      +-.+-. +....+..++...++|.-++-.++++.+.+. -.|++.....+..+|.+.|+..++.+++.++-+.|.+
T Consensus        79 ~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          79 GVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            333332 3445566678888889888888888887664 3677888888888899999988888888888877754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.05  E-value=0.17  Score=37.35  Aligned_cols=111  Identities=14%  Similarity=-0.006  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHHH
Q 009967          321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKEA  396 (521)
Q Consensus       321 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  396 (521)
                      |+++|.++|++..+.|. |.  ....+.  .....+.++|..++++.. ..+   ++.....|...|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa-~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhh-ccc---chhhhhhHHHhhhhccccchhhHHH
Confidence            56677777777766652 22  222222  233456777777777764 443   44555556665543    3467778


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 009967          397 KEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDP  440 (521)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p  440 (521)
                      .++|++....-++.....|...|..    ..|.++|.+.|+++.+.+.
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8877775434455555556655554    4588888888888887664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.25  Score=35.44  Aligned_cols=73  Identities=10%  Similarity=-0.053  Sum_probs=52.6

Q ss_pred             CChhHHHHHHHHHHhcCC---HHHHHHHHhhCC-CCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967          375 LKPEHYACMVDLLSRSGR---FKEAKEFLYDLP-FDP-GI-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV  447 (521)
Q Consensus       375 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  447 (521)
                      +++.+--....++.+..+   .++++.+++++- ..| +. ..+-.|.-+|.+.|++++|.+.++++++++|++..+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            555566666677776544   456777777642 233 33 46677888899999999999999999999998876643

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.51  E-value=4.7  Score=36.30  Aligned_cols=267  Identities=10%  Similarity=-0.072  Sum_probs=143.3

Q ss_pred             HHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--hcchHH
Q 009967          181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN--IAALGM  258 (521)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~  258 (521)
                      +......|+...|..+...+...........+.....   ...+....   ..  ..++......+..++.+  ..+.+.
T Consensus       161 ~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~--~~~~~~~~~~~~~~l~rla~~d~~~  232 (450)
T d1qsaa1         161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RT--TGATDFTRQMAAVAFASVARQDAEN  232 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HH--SCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hc--CCCChhhhHHHHHHHHHHhccChhH
Confidence            3344455666666666666654444444444444332   22222211   11  12333333333333333  245666


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHH----HHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 009967          259 GKSFHACAVKFLGKLDVFVGNSLI----SFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERM  332 (521)
Q Consensus       259 a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m  332 (521)
                      +..++.......... ..-...+-    ......+..+.+...+.....  .+.....-.+......+++..+...++.|
T Consensus       233 a~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l  311 (450)
T d1qsaa1         233 ARLMIPSLAQAQQLN-EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARL  311 (450)
T ss_dssp             HHHHHHHHHHHTTCC-HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHhhhhccccc-HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhc
Confidence            666666665543322 22222222    222234555666666554432  33433344455556778888888888876


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-HHH
Q 009967          333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG-IGF  411 (521)
Q Consensus       333 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~  411 (521)
                      ... ......-..-+..++...|+.+.|..+|..+. ..   ++  .|..|...  +.|..-.. . ....+..+. ...
T Consensus       312 ~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a-~~---~~--fYG~LAa~--~Lg~~~~~-~-~~~~~~~~~~~~~  380 (450)
T d1qsaa1         312 PME-AKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQ---RG--FYPMVAAQ--RIGEEYEL-K-IDKAPQNVDSALT  380 (450)
T ss_dssp             CTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TS---CS--HHHHHHHH--HTTCCCCC-C-CCCCCSCCCCHHH
T ss_pred             Ccc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh-cC---CC--hHHHHHHH--HcCCCCCC-C-cCCCCccHHHhhh
Confidence            542 22234455667788888999999999998874 22   33  34433322  22221000 0 000111111 111


Q ss_pred             ---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967          412 ---WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM  469 (521)
Q Consensus       412 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  469 (521)
                         -..-+..+...|....|.+.+..+.+..  ++.-...++....+.|.++.|+....+.
T Consensus       381 ~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         381 QGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence               1122445778899999999999887643  5667778899999999999999887764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.16  E-value=0.67  Score=31.16  Aligned_cols=63  Identities=13%  Similarity=0.083  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967          321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD  385 (521)
Q Consensus       321 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  385 (521)
                      +.=++.+-++.+....+.|+.......+++|.+.+++..|.++++-++.+.+  ++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            3445666677777778889999999999999999999999999998876766  34556766654

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.55  E-value=2.6  Score=28.24  Aligned_cols=61  Identities=7%  Similarity=0.035  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 009967           89 YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL  150 (521)
Q Consensus        89 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  150 (521)
                      .-++.+-++.+......|++....+.+++|.+.+++..|.++++-.+... .++...|..++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            34555666666666667777777777777777777777777777666542 23344554443